Query 027399
Match_columns 224
No_of_seqs 127 out of 293
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 15:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 73.5 4.4 0.00015 25.6 3.7 26 85-110 2-27 (33)
2 1zme_C Proline utilization tra 49.8 15 0.00051 24.5 3.3 26 84-109 43-68 (70)
3 2xdj_A Uncharacterized protein 49.5 21 0.00073 26.4 4.3 24 86-109 21-44 (83)
4 1am9_A Srebp-1A, protein (ster 48.3 25 0.00084 25.4 4.4 27 84-110 49-75 (82)
5 1hlo_A Protein (transcription 42.4 23 0.00078 25.2 3.4 24 84-107 56-79 (80)
6 1nkp_B MAX protein, MYC proto- 40.7 38 0.0013 24.0 4.4 27 84-110 46-72 (83)
7 4e61_A Protein BIM1; EB1-like 38.6 41 0.0014 26.3 4.5 29 82-110 1-29 (106)
8 2zvf_A Alanyl-tRNA synthetase; 37.7 1.1E+02 0.0037 23.7 7.0 46 66-111 13-58 (171)
9 3ra3_B P2F; coiled coil domain 35.4 41 0.0014 20.5 3.2 24 87-110 2-25 (28)
10 3myf_A Sensor protein; HPT, hi 34.4 97 0.0033 23.2 6.0 65 35-107 51-115 (119)
11 2gr7_A Adhesin; trimeric autot 31.9 42 0.0014 26.6 3.7 38 85-122 32-69 (129)
12 2yy0_A C-MYC-binding protein; 29.8 49 0.0017 22.5 3.3 22 87-108 21-42 (53)
13 3r4h_A Coiled coil helix CC-TE 27.5 81 0.0028 19.9 3.7 26 85-110 2-27 (34)
14 3pbf_A Pulmonary surfactant-as 26.3 49 0.0017 24.4 3.0 23 86-108 3-25 (148)
15 1uuj_A Platelet-activating fac 25.7 29 0.00098 26.3 1.6 24 87-110 60-83 (88)
16 3i00_A HIP-I, huntingtin-inter 25.5 90 0.0031 24.4 4.5 21 85-105 40-60 (120)
17 1dh3_A Transcription factor CR 24.5 1.1E+02 0.0037 20.6 4.3 26 85-110 22-47 (55)
18 3nmd_A CGMP dependent protein 23.8 98 0.0034 22.6 4.1 26 85-110 40-65 (72)
19 1a93_B MAX protein, coiled coi 23.3 1.1E+02 0.0038 19.5 3.8 24 86-109 8-31 (34)
20 2dgc_A Protein (GCN4); basic d 22.4 1.3E+02 0.0045 20.8 4.5 26 85-110 30-55 (63)
21 1ic2_A Tropomyosin alpha chain 22.3 1.1E+02 0.0039 21.7 4.3 47 60-110 20-66 (81)
22 3twe_A Alpha4H; unknown functi 22.1 1.1E+02 0.0037 18.5 3.4 22 88-109 4-25 (27)
23 1r8i_A TRAC; VIRB5, helical bu 21.9 2.4E+02 0.0083 23.1 6.8 25 86-110 16-40 (213)
24 1urf_A Protein kinase C-like 1 21.6 2.2E+02 0.0077 21.2 5.8 21 43-63 24-44 (81)
25 3trt_A Vimentin; cytoskeleton, 21.4 82 0.0028 21.8 3.3 20 86-105 57-76 (77)
26 1jcd_A Major outer membrane li 21.3 1.4E+02 0.0047 20.4 4.3 19 88-106 14-32 (52)
27 3u1c_A Tropomyosin alpha-1 cha 20.9 1.2E+02 0.0041 22.6 4.3 46 61-110 24-69 (101)
28 1dl0_A J-atracotoxin-HV1C; neu 20.8 25 0.00085 22.8 0.4 10 2-11 4-13 (37)
29 2er8_A Regulatory protein Leu3 20.3 51 0.0017 22.1 1.9 18 4-21 2-19 (72)
30 1t2k_D Cyclic-AMP-dependent tr 20.2 1.1E+02 0.0038 20.6 3.6 16 90-105 41-56 (61)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.47 E-value=4.4 Score=25.64 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
|.|..|+++|..++.|++.+|-+++.
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999987764
No 2
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=49.81 E-value=15 Score=24.52 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLKEQAA 109 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k~qla 109 (224)
-+.|..|+.+|..|+.+|+.++..++
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999998887664
No 3
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.47 E-value=21 Score=26.41 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLKEQAA 109 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k~qla 109 (224)
.+..|++||..++.|++.+|.++.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 467788888888888888776544
No 4
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=48.34 E-value=25 Score=25.38 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
+-.|..|+.++..|+.|++.++.++.+
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999988875
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.41 E-value=23 Score=25.22 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLKEQ 107 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k~q 107 (224)
+..|..|+.++..++.+++.++.|
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888999999888888888764
No 6
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.72 E-value=38 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
+-.|..|+.++..++.|++.++.+...
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~ 72 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999998888888888888765543
No 7
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=38.65 E-value=41 Score=26.29 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 82 GCVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 82 GCvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
|..|.+..|+.++.+.+++++.++.++..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~e 29 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQ 29 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777766655543
No 8
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=37.71 E-value=1.1e+02 Score=23.66 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=33.3
Q ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 66 VTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQS 111 (224)
Q Consensus 66 ~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla~~ 111 (224)
..++-+....+.-|..--...|..|+.++..++.||+.++.+++..
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554555777888889999999999999888887753
No 9
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.41 E-value=41 Score=20.51 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 87 IFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
|..|+++...++.|++.+.-+++.
T Consensus 2 irrlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 567888888999999988877764
No 10
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=34.38 E-value=97 Score=23.23 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=41.9
Q ss_pred chHHHHHHHhchhhHHHHHhcCCCcCHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 35 THFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQ 107 (224)
Q Consensus 35 ~~F~~vHKVFG~SNV~KmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~q 107 (224)
.-...+||+-|++..+..- .-..-+...|..+|..+|+-..-..+..|..+|..+..++....++
T Consensus 51 ~l~~~aHkLkGaa~~~Ga~--------~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGVP--------TTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHHTTTTCH--------HHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHH--------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456688888877644321 1122234567778888887777777888888887777776655444
No 11
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=31.87 E-value=42 Score=26.55 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCC
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPN 122 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~~~~~~~~~~~~~ 122 (224)
.-|..+..+|.+|+.+|..++.++....+..-...++|
T Consensus 32 ~~v~~~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LP 69 (129)
T 2gr7_A 32 KGVTNLAGQVNNLEGKVNKVGKRADAGTASALAASQLP 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34456788888888888888877766555544444544
No 12
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.82 E-value=49 Score=22.49 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027399 87 IFALQHQVVNLQAQLASLKEQA 108 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~ql 108 (224)
+-.|+.++..|+++++.+++++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444433
No 13
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=27.53 E-value=81 Score=19.93 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
|.+..+++++...+.||+.+|-+++.
T Consensus 2 gelaaikqelaaikkelaaikfelaa 27 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAA 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888877775
No 14
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=26.26 E-value=49 Score=24.36 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLKEQA 108 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k~ql 108 (224)
++..|++++..|+.+|..++..+
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999998888
No 15
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=25.70 E-value=29 Score=26.26 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 87 IFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
|-.||.+|.+|+++++.+++++..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667999999999999999988875
No 16
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.49 E-value=90 Score=24.45 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLK 105 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k 105 (224)
.+|..|+.+|..|++||+..+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999998765
No 17
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.54 E-value=1.1e+02 Score=20.65 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
..|..|+.++..|+.|...++.++..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888887765
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.76 E-value=98 Score=22.64 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
..|..|+.+|.+..+++..++.++-.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888888888865
No 19
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.26 E-value=1.1e+02 Score=19.55 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLKEQAA 109 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k~qla 109 (224)
-+...|+.|++++.+-+.+..|+.
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 356778888888888888877764
No 20
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.42 E-value=1.3e+02 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
..|..|+.++..|+.+.+.++.++..
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766654
No 21
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.34 E-value=1.1e+02 Score=21.68 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 60 DRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 60 ~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
+|.+.+..-+=+++.|.. -.-.-|..|+..|..++.+|..+...+..
T Consensus 20 ~~~~~~e~~l~~~e~~~~----~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSK----QLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554431 12356788889999999988888877665
No 22
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.07 E-value=1.1e+02 Score=18.48 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027399 88 FALQHQVVNLQAQLASLKEQAA 109 (224)
Q Consensus 88 ~~Lq~Qi~~lqaELa~~k~qla 109 (224)
-.|..++..+|+.|.+++.++.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888899999998888765
No 23
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=21.88 E-value=2.4e+02 Score=23.11 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.|..+..||..++.+|..+|.++..
T Consensus 16 q~~q~~~Ql~~~k~Ql~q~k~qy~s 40 (213)
T 1r8i_A 16 QLEQMAQQLEQLKSQLETQKNMYES 40 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888876
No 24
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=21.58 E-value=2.2e+02 Score=21.21 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.0
Q ss_pred HhchhhHHHHHhcCCCcCHHH
Q 027399 43 VFGASNVSKLLAHLPVSDRCE 63 (224)
Q Consensus 43 VFG~SNV~KmLq~lp~~~R~d 63 (224)
-=|+.|+++++..-+..+|.-
T Consensus 24 K~GAENmi~~y~~g~~~drKl 44 (81)
T 1urf_A 24 KQGAENMIQTYSNGSTKDRKL 44 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHcCCchhHHH
Confidence 359999999999888777743
No 25
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.44 E-value=82 Score=21.84 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLK 105 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k 105 (224)
-|..|.++|..|+.||..+|
T Consensus 57 Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35666666666666666554
No 26
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.27 E-value=1.4e+02 Score=20.43 Aligned_cols=19 Identities=0% Similarity=-0.050 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027399 88 FALQHQVVNLQAQLASLKE 106 (224)
Q Consensus 88 ~~Lq~Qi~~lqaELa~~k~ 106 (224)
..|..++.+|+.++..++.
T Consensus 14 ~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 14 QTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 27
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.85 E-value=1.2e+02 Score=22.61 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 61 RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 61 R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
|.+.+..-+=+++.|... .=.-|..|+.+|..++.+|..++.++..
T Consensus 24 rae~~e~~~k~~e~~~~~----~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQ----LEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433322 3456788888888888888888776664
No 28
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=20.82 E-value=25 Score=22.77 Aligned_cols=10 Identities=60% Similarity=1.451 Sum_probs=8.2
Q ss_pred CCCCCCChhh
Q 027399 2 TGSGSPCGAC 11 (224)
Q Consensus 2 ~g~~s~CAAC 11 (224)
||...|||||
T Consensus 4 tgadrpcaac 13 (37)
T 1dl0_A 4 TGADRPCAAC 13 (37)
T ss_dssp CCTTSBCCSS
T ss_pred ccCCCccccc
Confidence 6778889887
No 29
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.27 E-value=51 Score=22.07 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=14.2
Q ss_pred CCCCChhhhhhhcCCCCC
Q 027399 4 SGSPCGACKFLRRKCVKG 21 (224)
Q Consensus 4 ~~s~CAACK~lRRkC~~d 21 (224)
...+|..|+-..-||...
T Consensus 2 ~~~AC~~Cr~rK~kCd~~ 19 (72)
T 2er8_A 2 RKFACVECRQQKSKCDAH 19 (72)
T ss_dssp CCCCCHHHHHTTCCCCSG
T ss_pred cCchhHHHHhcccCCCCC
Confidence 357899999888888764
No 30
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.17 E-value=1.1e+02 Score=20.60 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027399 90 LQHQVVNLQAQLASLK 105 (224)
Q Consensus 90 Lq~Qi~~lqaELa~~k 105 (224)
|+.+|..|+.|+..++
T Consensus 41 L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 41 LQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
Done!