Query 027399
Match_columns 224
No_of_seqs 127 out of 293
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 15:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027399.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027399hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 55.4 9 0.00066 26.0 4.9 50 61-110 13-62 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 52.8 9.1 0.00066 24.5 4.3 27 84-110 32-58 (61)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 46.6 25 0.0018 23.5 6.0 26 84-109 51-76 (88)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 30.6 33 0.0024 22.6 4.4 28 83-110 48-75 (80)
5 d1urfa_ a.2.6.1 (A:) Protein k 29.3 45 0.0033 22.8 5.1 49 43-107 24-72 (81)
6 d1pyia1 g.38.1.1 (A:30-71) PPR 24.9 19 0.0014 21.5 2.1 18 4-21 1-18 (42)
7 d1zmec1 g.38.1.1 (C:31-66) PUT 24.3 19 0.0014 21.1 1.9 16 5-20 1-16 (36)
8 d3coqa1 g.38.1.1 (A:8-48) Gal4 23.6 19 0.0013 21.3 1.8 15 6-20 2-16 (41)
9 d1clda_ g.38.1.1 (A:) CD2-Lac9 19.7 24 0.0017 20.1 1.6 16 6-21 1-16 (33)
10 d1dl0a_ g.3.6.2 (A:) J-atracot 19.1 13 0.00098 22.4 0.4 10 2-11 4-13 (37)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.42 E-value=9 Score=26.04 Aligned_cols=50 Identities=6% Similarity=0.029 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 61 RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 61 R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
..+.+.+-+-|+..-+.+|++|-.+.|..+..+...++++|...+..+..
T Consensus 13 ~a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~ 62 (114)
T d1hcia4 13 QANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDK 62 (114)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888889999999999999999999999999988765553
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.81 E-value=9.1 Score=24.54 Aligned_cols=27 Identities=22% Similarity=0.130 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
+-.|..|+.++..+++|+..++.+...
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999887654
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.62 E-value=25 Score=23.46 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLKEQAA 109 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k~qla 109 (224)
+..|..|+.++..+..+++.++.+..
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~ 76 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888777777765543
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.59 E-value=33 Score=22.58 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 83 CVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 83 CvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.+-.|..|+.++..|..+++.++..+..
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~ 75 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999998888877654
No 5
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.33 E-value=45 Score=22.80 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=31.2
Q ss_pred HhchhhHHHHHhcCCCcCHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 43 VFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQ 107 (224)
Q Consensus 43 VFG~SNV~KmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~q 107 (224)
.=|+.||+++|..-...+|.... ||+. .+..-.++|..|+.+|..++..
T Consensus 24 keGaEnm~k~~~~~~~~DrK~l~-----eaq~-----------~l~eS~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 24 KQGAENMIQTYSNGSTKDRKLLL-----TAQQ-----------MLQDSKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHH-----HHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHHH-----HHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 35999999999986655664332 3332 3344456677777777766543
No 6
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.91 E-value=19 Score=21.45 Aligned_cols=18 Identities=28% Similarity=0.735 Sum_probs=14.0
Q ss_pred CCCCChhhhhhhcCCCCC
Q 027399 4 SGSPCGACKFLRRKCVKG 21 (224)
Q Consensus 4 ~~s~CAACK~lRRkC~~d 21 (224)
+..+|..||..+.||...
T Consensus 1 Sr~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 1 SRTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCCHHHHHHTCCCCCC
T ss_pred CcHHHHHHHHhCcCCCCc
Confidence 346899999988899753
No 7
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.30 E-value=19 Score=21.12 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=12.0
Q ss_pred CCCChhhhhhhcCCCC
Q 027399 5 GSPCGACKFLRRKCVK 20 (224)
Q Consensus 5 ~s~CAACK~lRRkC~~ 20 (224)
+.+|-.||..+.||..
T Consensus 1 S~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 1 SVACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCCHHHHHHTCCCCC
T ss_pred CccHHHHHHhCCcCCC
Confidence 3578888888888864
No 8
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.65 E-value=19 Score=21.28 Aligned_cols=15 Identities=33% Similarity=0.950 Sum_probs=12.5
Q ss_pred CCChhhhhhhcCCCC
Q 027399 6 SPCGACKFLRRKCVK 20 (224)
Q Consensus 6 s~CAACK~lRRkC~~ 20 (224)
.+|..||..+.||..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 588999998889965
No 9
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=19.73 E-value=24 Score=20.09 Aligned_cols=16 Identities=38% Similarity=0.837 Sum_probs=13.4
Q ss_pred CCChhhhhhhcCCCCC
Q 027399 6 SPCGACKFLRRKCVKG 21 (224)
Q Consensus 6 s~CAACK~lRRkC~~d 21 (224)
.+|-.||..+.||...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 4799999999999764
No 10
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=19.07 E-value=13 Score=22.37 Aligned_cols=10 Identities=60% Similarity=1.451 Sum_probs=8.1
Q ss_pred CCCCCCChhh
Q 027399 2 TGSGSPCGAC 11 (224)
Q Consensus 2 ~g~~s~CAAC 11 (224)
||...|||||
T Consensus 4 tgadrpcaac 13 (37)
T d1dl0a_ 4 TGADRPCAAC 13 (37)
T ss_dssp CCTTSBCCSS
T ss_pred cCCCCccccc
Confidence 6777888887
Done!