BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027403
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OPX|A Chain A, Crystal Structure Of Pyrimidine 5 -Nucleotidase Sdt1 From
Saccharomyces Cerevisiae Complexed With Uridine
5'-Monophosphate
Length = 263
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 27/162 (16%)
Query: 20 YREHGTTMAGLKAVGYEFDNDEFHAFVHGKLPYEK-LKPDPVLRNLLLSMPQ-----RKI 73
Y+E+G + GL + ++ + E++ V LP + LKPD LRN+LL + Q +
Sbjct: 79 YKEYGLAIRGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLW 137
Query: 74 IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKP 133
+FTNA + HA+ L LG+ D F DG+ +S ++CKP
Sbjct: 138 LFTNAYKNHAIRCLRLLGIADLF-------------------DGLTYCDYSRTDTLVCKP 178
Query: 134 SLEAIETAIRIANVDPKKTIFF-DDSARNIASAKAAGLHTVI 174
++A E A++ + + + +F DDS +NI + G+ T I
Sbjct: 179 HVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 220
>pdb|3NUQ|A Chain A, Structure Of A Putative Nucleotide Phosphatase From
Saccharomyces Cerevisiae
Length = 282
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 27/178 (15%)
Query: 4 HLHIDESEVPRMCLELYREHGTTMAGLKAVGYEFDNDEFHAFVHGKLPYEK-LKPDPVLR 62
HL + + + Y+E+G + GL + ++ + E++ V LP + LKPD LR
Sbjct: 90 HLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLR 148
Query: 63 NLLLSMPQ-----RKIIFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRLQPADNTDG 117
N+LL + Q + +FTNA + HA+ L LG+ D F DG
Sbjct: 149 NMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLF-------------------DG 189
Query: 118 IENNSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFF-DDSARNIASAKAAGLHTVI 174
+ +S ++CKP ++A E A++ + + + +F DDS +NI + G+ T I
Sbjct: 190 LTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 247
>pdb|3ONN|A Chain A, Crystal Structure Of 5'-Nucleotidase Sdt1 From
Saccharomyces Cerevisiae
Length = 263
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 27/162 (16%)
Query: 20 YREHGTTMAGLKAVGYEFDNDEFHAFVHGKLPYEK-LKPDPVLRNLLLSMPQ-----RKI 73
Y+E+G + GL + ++ + E++ V LP + LKPD LRN+LL + Q +
Sbjct: 79 YKEYGLAIRGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLW 137
Query: 74 IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKP 133
+FTNA + HA+ L LG+ D F DG+ +S ++CKP
Sbjct: 138 LFTNAYKNHAIRCLRLLGIADLF-------------------DGLTYCDYSRTDTLVCKP 178
Query: 134 SLEAIETAIRIANVDPKKTIFF-DDSARNIASAKAAGLHTVI 174
++A E A++ + + + +F DDS +NI + G+ T I
Sbjct: 179 HVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 220
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 26/124 (20%)
Query: 53 EKLKPDPVLRNLLLSMPQRKI---IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRL 109
E LK +P +R L + ++I + T+ Q+ A+E L RL LE F+ + F
Sbjct: 81 ELLKENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLEKYFD-VXVF------- 132
Query: 110 QPADNTDGIENNSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAG 169
D ++N KP E + NV P+K + F+DS + +AK+AG
Sbjct: 133 -----GDQVKNG----------KPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAG 177
Query: 170 LHTV 173
+ +
Sbjct: 178 IERI 181
>pdb|2I6X|A Chain A, The Structure Of A Predicted Had-like Family Hydrolase
From Porphyromonas Gingivalis
Length = 211
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 106 NPRLQPADNT-DGIENNSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIAS 164
+PR P+ T D + ++S Q KP+ + I + P++T+F DD N+A+
Sbjct: 123 SPRFLPSGRTLDSFFDKVYASCQXGKYKPNEDIFLEXIADSGXKPEETLFIDDGPANVAT 182
Query: 165 AKAAGLHT 172
A+ G HT
Sbjct: 183 AERLGFHT 190
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 132 KPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTVIVGSSVPVP 182
KP + ++ P T+FFDD+A NI A G+ +++V +P
Sbjct: 148 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKTTIP 198
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 122 SFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHT 172
++ S + + KP E + A +DPK+T F DDS N A+ G+ T
Sbjct: 163 TYLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIST 213
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 122 SFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHT 172
++ S + + KP E + A +DPK+T F DDS N A+ G+ T
Sbjct: 163 TYLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIST 213
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 123 FSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTV 173
F+S+ + KP+ + +A V P++ + DD +N+ +A+A G H V
Sbjct: 132 FTSSALGVXKPNPAXYRLGLTLAQVRPEEAVXVDDRLQNVQAARAVGXHAV 182
>pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum
Length = 602
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 1 MSQHLHIDESEVPRMCLELYREHGTTMA---GLKAVGYEFDNDEFHAFVHGKLPYEKLKP 57
M ++ ID+ E+ M + R+HGT A G + G F +E + LP+ +P
Sbjct: 455 MKEYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP--RP 512
Query: 58 DPVLRNLL 65
D + R+L
Sbjct: 513 DAINRSLF 520
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 1 MSQHLHIDESEVPRMCLELYREHGTTMA---GLKAVGYEFDNDEFHAFVHGKLPYEKLKP 57
M ++ ID+ E+ M + R+HGT A G + G F +E + LP+ +P
Sbjct: 473 MKEYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP--RP 530
Query: 58 DPVLRNLL 65
D + R+L
Sbjct: 531 DAINRSLF 538
>pdb|1SGO|A Chain A, Nmr Structure Of The Human C14orf129 Gene Product,
Hspc210. Northeast Structural Genomics Target Hr969
Length = 139
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 4 HLHIDESEVPRMCLELYREHGTTMAGLKAVGYEFDNDEFH 43
+++++ E R CLEL T AGLK VGY FD + H
Sbjct: 65 YINVETKERNRYCLEL------TEAGLKVVGYAFDQVDDH 98
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 25/146 (17%)
Query: 59 PVLRNLLLSMPQRKI-IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRLQPADNTDG 117
P + +LL+ + I I ++ K+A+ VL LG+ D F+ I AD
Sbjct: 119 PGIESLLIDVKSNNIKIGLSSASKNAINVLNHLGISDKFDFI------------AD-AGK 165
Query: 118 IENNSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTVIVGS 177
+NN KP E + + NV+P+ I +D++ I + +A + +V VG+
Sbjct: 166 CKNN----------KPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANMFSVGVGN 215
Query: 178 SVPVPPADHALNSIHNIK-EAIPEIW 202
+ A+ ++S + +K E I E +
Sbjct: 216 YENLKKANLVVDSTNQLKFEYIQEKY 241
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 132 KPSLEAIETAIRIANVDPKKTIFF-DDSARNIASAKAAGLHTVIVGSS 178
KPS E + A+ N++P K +FF DS +I SA AG + GS+
Sbjct: 159 KPSPEPVLAALTNINIEPSKEVFFIGDSISDIQSAIEAGCLPIKYGST 206
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 28/155 (18%)
Query: 54 KLKPD---PVLRNLLLSMPQRKI-IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRL 109
KL P+ P + LL + I I + ++A ++L RL + D F I+
Sbjct: 87 KLTPEDLLPGIGRLLCQLKNENIKIGLASSSRNAPKILRRLAIIDDFHAIV--------- 137
Query: 110 QPADNTDGIENNSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAG 169
P G KP + TA +V P +D+ I++ K+AG
Sbjct: 138 DPTTLAKG--------------KPDPDIFLTAAAXLDVSPADCAAIEDAEAGISAIKSAG 183
Query: 170 LHTVIVGSSVPVPPADHALNSIHNIK-EAIPEIWE 203
V VG P AD + ++ E + E WE
Sbjct: 184 XFAVGVGQGQPXLGADLVVRQTSDLTLELLHEEWE 218
>pdb|4FFD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 24/103 (23%)
Query: 74 IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKP 133
+ T++D + AM L LG++D F+ I +S + KP
Sbjct: 120 MITDSDTEQAMAFLDALGIKDLFDSIT-----------------------TSEEAGFFKP 156
Query: 134 SLEAIETAIRIANVDPKKTIFFDDS-ARNIASAKAAGLHTVIV 175
E A++ A V ++ ++ D+ ++ +K G+ ++++
Sbjct: 157 HPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILL 199
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 199 PEIWEGEGEQLEQVIQPAAVETAVL 223
P +W G GE E ++Q AAV L
Sbjct: 189 PRLWAGTGEMTETIMQGAAVSDIAL 213
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 125 SNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTVIVGSSVPVPPA 184
S Q + KP + + + P + +F DD N+ A+ G+ T++V +
Sbjct: 153 SCQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGMVTILVQDT------ 206
Query: 185 DHALNSIHNI 194
D AL + +
Sbjct: 207 DTALKELEKV 216
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 40 DEFHAFVHGKLPYEKLKPDPVLRNLLLSMPQRKIIFTNADQKHAMEVLGRLGLE 93
DE + HG +P +L DP L +M +R D+ H ++ LG E
Sbjct: 411 DEANIVTHGMVPMNRLTDDP---RWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 125 SNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTVIV 175
S Q + KP + + P + +F DD N+ A+ G+ T++V
Sbjct: 153 SCQVGMIKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMVTILV 203
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 40 DEFHAFVHGKLPYEKLKPDPVLRNLLLSMPQRKIIFTNADQKHAMEVLGRLGLE 93
DE + HG +P +L DP L +M +R D+ H ++ LG E
Sbjct: 411 DEANIETHGMVPMNRLTDDP---RWLPAMSERVTRMVQRDRNHPSVIIWSLGTE 461
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 40 DEFHAFVHGKLPYEKLKPDPVLRNLLLSMPQRKIIFTNADQKHAMEVLGRLGLE 93
DE + HG +P +L DP L +M +R D+ H ++ LG E
Sbjct: 440 DEANIETHGMVPMNRLTDDP---RWLPAMSERVTRMVQRDRNHPSVIIWSLGTE 490
>pdb|3VYR|B Chain B, Crystal Structure Of The Hypc-Hypd Complex
pdb|3VYS|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I)
pdb|3VYT|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I
Inward)
pdb|3VYU|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form Ii)
Length = 372
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 143 RIANVDPKKTIFFDDSARNIASAKAAGLHTVIVGSSVPVPPADHALNSIHNIKEAIPEIW 202
RIA +P KT+ +A AAG+ V + + + S+H + E+
Sbjct: 132 RIAKENPDKTVVHFSPGFETTTAPAAGMLNVAAQEEL----ENFKIYSVHRLTPPAVEVL 187
Query: 203 EGEGEQLEQVIQPAAVETAV 222
+G + +I P V T +
Sbjct: 188 LKQGTVFQGLIAPGHVSTII 207
>pdb|2Z1D|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation
Protein, Hypd From Thermococcus Kodakaraensis
pdb|2Z1D|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation
Protein, Hypd From Thermococcus Kodakaraensis
Length = 372
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 143 RIANVDPKKTIFFDDSARNIASAKAAGLHTVIVGSSVPVPPADHALNSIHNIKEAIPEIW 202
RIA +P KT+ +A AAG+ V + + + S+H + E+
Sbjct: 132 RIAKENPDKTVVHFSPGFETTTAPAAGMLNVAAQEEL----ENFKIYSVHRLTPPAVEVL 187
Query: 203 EGEGEQLEQVIQPAAVETAV 222
+G + +I P V T +
Sbjct: 188 LKQGTVFQGLIAPGHVSTII 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,762,621
Number of Sequences: 62578
Number of extensions: 270697
Number of successful extensions: 728
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 47
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)