Query 027404
Match_columns 224
No_of_seqs 167 out of 1193
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.5 7.3E-14 1.6E-18 112.9 11.9 89 133-223 37-125 (144)
2 PLN03088 SGT1, suppressor of 99.4 5.6E-12 1.2E-16 116.1 13.1 89 133-223 15-103 (356)
3 TIGR02552 LcrH_SycD type III s 99.4 8E-12 1.7E-16 97.2 11.8 88 134-223 31-118 (135)
4 PRK11189 lipoprotein NlpI; Pro 99.4 8.8E-12 1.9E-16 111.5 13.1 89 133-223 77-165 (296)
5 KOG0553 TPR repeat-containing 99.4 2.9E-12 6.3E-17 115.4 9.4 89 133-223 94-182 (304)
6 PRK10370 formate-dependent nit 99.3 1.3E-11 2.9E-16 105.0 12.6 89 134-223 87-177 (198)
7 PF13414 TPR_11: TPR repeat; P 99.3 7.2E-12 1.6E-16 87.7 8.3 68 152-221 1-69 (69)
8 PRK10370 formate-dependent nit 99.3 2.6E-11 5.7E-16 103.2 12.7 90 133-223 52-143 (198)
9 PRK12370 invasion protein regu 99.3 2.6E-11 5.7E-16 117.1 12.3 90 132-223 316-405 (553)
10 PRK15363 pathogenicity island 99.3 4E-11 8.7E-16 99.6 11.5 87 132-220 47-133 (157)
11 COG3063 PilF Tfp pilus assembl 99.3 3E-11 6.4E-16 105.9 10.6 83 134-218 49-131 (250)
12 COG3063 PilF Tfp pilus assembl 99.2 3.7E-11 8.1E-16 105.3 9.6 87 134-223 83-172 (250)
13 KOG4626 O-linked N-acetylgluco 99.2 4.9E-11 1.1E-15 116.2 11.0 87 134-222 300-386 (966)
14 cd00189 TPR Tetratricopeptide 99.2 1.5E-10 3.3E-15 79.3 10.2 88 133-222 13-100 (100)
15 KOG4626 O-linked N-acetylgluco 99.2 3.9E-11 8.5E-16 116.9 8.8 88 134-223 402-489 (966)
16 PRK15359 type III secretion sy 99.2 1.1E-10 2.3E-15 94.4 9.6 80 139-223 12-91 (144)
17 TIGR02795 tol_pal_ybgF tol-pal 99.2 1E-09 2.2E-14 82.3 12.4 89 133-223 15-109 (119)
18 PRK09782 bacteriophage N4 rece 99.1 4.1E-10 8.9E-15 116.0 12.9 88 134-223 623-710 (987)
19 TIGR00990 3a0801s09 mitochondr 99.1 5.5E-10 1.2E-14 108.7 12.7 88 134-223 345-432 (615)
20 PF13432 TPR_16: Tetratricopep 99.1 2.8E-10 6E-15 78.9 7.3 64 158-223 1-64 (65)
21 TIGR00990 3a0801s09 mitochondr 99.1 9.5E-10 2.1E-14 107.0 13.0 88 134-223 379-466 (615)
22 TIGR02552 LcrH_SycD type III s 99.1 6.7E-10 1.5E-14 86.3 9.5 81 141-223 4-84 (135)
23 KOG1126 DNA-binding cell divis 99.1 6.1E-11 1.3E-15 115.5 4.2 87 134-222 435-521 (638)
24 PRK12370 invasion protein regu 99.1 1.2E-09 2.7E-14 105.6 12.6 88 133-222 351-439 (553)
25 TIGR02521 type_IV_pilW type IV 99.1 3E-09 6.4E-14 86.3 12.3 84 134-219 45-128 (234)
26 PRK09782 bacteriophage N4 rece 99.0 1.8E-09 3.9E-14 111.3 13.0 87 134-223 590-676 (987)
27 KOG1126 DNA-binding cell divis 99.0 3E-10 6.4E-15 110.7 6.7 89 134-224 469-557 (638)
28 PF12895 Apc3: Anaphase-promot 99.0 6.8E-10 1.5E-14 81.1 7.1 81 133-216 2-84 (84)
29 PRK02603 photosystem I assembl 99.0 2.9E-09 6.3E-14 87.6 11.4 88 134-223 49-153 (172)
30 TIGR02521 type_IV_pilW type IV 99.0 7E-09 1.5E-13 84.1 12.4 88 134-223 79-168 (234)
31 CHL00033 ycf3 photosystem I as 99.0 7.3E-09 1.6E-13 84.7 12.1 89 134-223 49-153 (168)
32 PRK15174 Vi polysaccharide exp 99.0 5.3E-09 1.1E-13 103.4 12.5 82 139-222 269-350 (656)
33 PRK15179 Vi polysaccharide bio 99.0 4.7E-09 1E-13 104.8 12.0 88 134-223 100-187 (694)
34 PF13432 TPR_16: Tetratricopep 99.0 1.4E-09 3.1E-14 75.3 5.9 56 133-189 10-65 (65)
35 PRK11189 lipoprotein NlpI; Pro 98.9 1.2E-08 2.5E-13 91.4 12.5 88 133-223 111-199 (296)
36 PF13429 TPR_15: Tetratricopep 98.9 1.8E-09 3.8E-14 94.7 6.9 89 134-224 160-248 (280)
37 PRK15174 Vi polysaccharide exp 98.9 9E-09 1.9E-13 101.8 12.6 88 134-223 226-317 (656)
38 PF14559 TPR_19: Tetratricopep 98.9 3.3E-09 7.2E-14 73.7 6.6 64 133-197 4-67 (68)
39 PF13414 TPR_11: TPR repeat; P 98.9 2.9E-09 6.2E-14 74.3 6.0 53 133-186 16-69 (69)
40 KOG1125 TPR repeat-containing 98.9 2E-09 4.3E-14 103.9 6.9 87 134-222 444-530 (579)
41 PRK15179 Vi polysaccharide bio 98.9 1.1E-08 2.3E-13 102.2 12.1 86 134-221 134-219 (694)
42 PRK11447 cellulose synthase su 98.9 2.2E-08 4.8E-13 104.4 13.3 90 133-223 364-494 (1157)
43 TIGR02917 PEP_TPR_lipo putativ 98.9 2.4E-08 5.2E-13 96.1 12.4 87 134-223 784-870 (899)
44 COG5010 TadD Flp pilus assembl 98.9 2.1E-08 4.5E-13 89.1 10.8 88 134-223 114-201 (257)
45 KOG1155 Anaphase-promoting com 98.9 1.1E-08 2.5E-13 97.1 9.7 88 134-223 344-431 (559)
46 PF06552 TOM20_plant: Plant sp 98.8 2.2E-08 4.7E-13 85.1 9.9 88 136-223 7-113 (186)
47 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.5E-08 3.2E-13 96.3 9.5 69 149-219 70-141 (453)
48 PRK10049 pgaA outer membrane p 98.8 4.7E-08 1E-12 98.1 13.0 87 134-223 63-149 (765)
49 TIGR03302 OM_YfiO outer membra 98.8 4.6E-08 1E-12 83.1 10.9 90 133-223 46-148 (235)
50 PRK11906 transcriptional regul 98.8 3.5E-08 7.7E-13 93.8 11.1 89 132-222 316-404 (458)
51 TIGR02917 PEP_TPR_lipo putativ 98.8 5.5E-08 1.2E-12 93.7 12.5 88 134-223 139-226 (899)
52 PRK10049 pgaA outer membrane p 98.8 6E-08 1.3E-12 97.3 12.9 89 133-223 372-460 (765)
53 PF13371 TPR_9: Tetratricopept 98.8 4.5E-08 9.8E-13 68.8 8.4 63 133-196 8-70 (73)
54 PRK10803 tol-pal system protei 98.8 1.2E-07 2.7E-12 84.5 13.0 89 133-223 156-250 (263)
55 COG4235 Cytochrome c biogenesi 98.8 9.3E-08 2E-12 86.3 12.0 89 134-223 170-260 (287)
56 PRK11788 tetratricopeptide rep 98.8 1.1E-07 2.4E-12 85.8 12.4 88 133-222 193-281 (389)
57 KOG1155 Anaphase-promoting com 98.8 5E-08 1.1E-12 92.8 10.4 86 134-221 378-463 (559)
58 PRK11447 cellulose synthase su 98.7 1E-07 2.3E-12 99.4 12.4 89 133-223 616-704 (1157)
59 KOG1125 TPR repeat-containing 98.7 7.1E-08 1.5E-12 93.3 9.5 88 134-223 408-497 (579)
60 PF13371 TPR_9: Tetratricopept 98.7 9.1E-08 2E-12 67.3 7.5 60 162-223 3-62 (73)
61 PRK15363 pathogenicity island 98.7 1.1E-07 2.4E-12 79.1 9.1 76 147-224 27-103 (157)
62 PRK11788 tetratricopeptide rep 98.7 2.4E-07 5.3E-12 83.6 11.5 87 134-222 155-246 (389)
63 cd05804 StaR_like StaR_like; a 98.7 1.9E-07 4.1E-12 83.4 10.7 87 133-221 127-217 (355)
64 KOG0548 Molecular co-chaperone 98.6 1.5E-07 3.3E-12 90.4 10.1 88 134-223 372-459 (539)
65 PRK15331 chaperone protein Sic 98.6 2.3E-07 4.9E-12 77.8 9.4 87 133-222 50-136 (165)
66 KOG0547 Translocase of outer m 98.6 1.3E-07 2.9E-12 90.4 8.5 87 134-222 408-494 (606)
67 PLN02789 farnesyltranstransfer 98.6 5.1E-07 1.1E-11 82.6 11.8 87 135-223 87-175 (320)
68 COG4235 Cytochrome c biogenesi 98.6 5.5E-07 1.2E-11 81.4 11.8 89 134-223 136-226 (287)
69 TIGR03302 OM_YfiO outer membra 98.6 4.8E-07 1E-11 76.8 10.8 89 133-223 83-199 (235)
70 PRK11906 transcriptional regul 98.6 3.3E-07 7.2E-12 87.3 10.8 89 134-223 272-371 (458)
71 PRK10153 DNA-binding transcrip 98.6 4.7E-07 1E-11 87.8 11.7 87 134-223 398-486 (517)
72 PLN02789 farnesyltranstransfer 98.6 6.5E-07 1.4E-11 81.9 11.8 88 136-224 124-217 (320)
73 KOG1173 Anaphase-promoting com 98.6 4.6E-07 1E-11 87.7 10.8 88 134-223 394-522 (611)
74 PF14559 TPR_19: Tetratricopep 98.6 1.4E-07 3.1E-12 65.4 5.4 56 167-223 3-58 (68)
75 TIGR00540 hemY_coli hemY prote 98.5 9.1E-07 2E-11 82.4 11.5 83 134-219 313-399 (409)
76 KOG2076 RNA polymerase III tra 98.5 8.5E-07 1.9E-11 89.3 11.9 89 134-224 153-241 (895)
77 PF13429 TPR_15: Tetratricopep 98.5 5.9E-07 1.3E-11 78.7 9.6 88 134-223 124-213 (280)
78 PF12688 TPR_5: Tetratrico pep 98.5 2.2E-06 4.8E-11 68.2 11.9 86 131-218 12-103 (120)
79 PF13424 TPR_12: Tetratricopep 98.5 1.5E-07 3.3E-12 67.1 4.7 68 151-220 2-76 (78)
80 KOG0547 Translocase of outer m 98.5 3.3E-07 7.2E-12 87.8 8.1 88 132-220 474-567 (606)
81 cd00189 TPR Tetratricopeptide 98.5 9.5E-07 2.1E-11 60.1 8.2 66 156-223 2-67 (100)
82 PRK10747 putative protoheme IX 98.4 2E-06 4.3E-11 80.1 11.6 84 134-220 308-391 (398)
83 cd05804 StaR_like StaR_like; a 98.4 1.3E-06 2.8E-11 78.1 9.9 87 134-222 94-180 (355)
84 COG5010 TadD Flp pilus assembl 98.4 1.3E-06 2.8E-11 77.7 9.6 88 134-223 80-167 (257)
85 KOG0543 FKBP-type peptidyl-pro 98.4 1.9E-06 4.2E-11 80.6 10.6 88 134-223 222-324 (397)
86 CHL00033 ycf3 photosystem I as 98.4 1.9E-06 4.1E-11 70.4 9.4 87 135-223 14-105 (168)
87 PLN03088 SGT1, suppressor of 98.4 2E-06 4.4E-11 79.4 10.3 67 134-201 50-116 (356)
88 KOG3060 Uncharacterized conser 98.4 2.8E-06 6E-11 75.9 10.5 89 134-223 134-224 (289)
89 KOG4162 Predicted calmodulin-b 98.4 2.2E-06 4.8E-11 85.4 10.5 89 133-223 697-787 (799)
90 PRK02603 photosystem I assembl 98.4 4.2E-06 9.2E-11 68.8 10.6 80 142-223 21-105 (172)
91 PRK14574 hmsH outer membrane p 98.4 3E-06 6.5E-11 86.3 11.5 88 134-223 48-135 (822)
92 PF13431 TPR_17: Tetratricopep 98.4 4.2E-07 9.2E-12 56.7 3.4 33 142-175 1-33 (34)
93 PF09976 TPR_21: Tetratricopep 98.3 4.1E-06 8.8E-11 67.1 9.7 82 133-217 61-145 (145)
94 TIGR02795 tol_pal_ybgF tol-pal 98.3 4.8E-06 1E-10 62.2 9.5 68 154-223 2-72 (119)
95 COG4783 Putative Zn-dependent 98.3 5.1E-06 1.1E-10 79.4 11.6 88 134-223 320-407 (484)
96 KOG0548 Molecular co-chaperone 98.3 2.1E-06 4.5E-11 82.7 9.0 90 132-223 14-103 (539)
97 PF13428 TPR_14: Tetratricopep 98.3 1.5E-06 3.2E-11 56.6 5.3 43 154-197 1-43 (44)
98 PRK10153 DNA-binding transcrip 98.3 4.9E-06 1.1E-10 80.7 10.5 89 133-222 355-452 (517)
99 COG4783 Putative Zn-dependent 98.2 1.1E-05 2.4E-10 77.1 11.3 85 134-219 354-454 (484)
100 KOG0553 TPR repeat-containing 98.2 3.1E-06 6.7E-11 76.8 7.1 65 134-199 129-193 (304)
101 KOG4648 Uncharacterized conser 98.2 3.7E-06 8.1E-11 78.2 6.7 89 133-223 110-198 (536)
102 KOG1128 Uncharacterized conser 98.2 8.8E-06 1.9E-10 80.9 9.3 91 132-224 497-587 (777)
103 PRK10747 putative protoheme IX 98.1 3.1E-05 6.6E-10 72.1 12.1 87 133-221 131-218 (398)
104 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 8.2E-06 1.8E-10 77.8 8.2 50 134-184 89-141 (453)
105 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 2.7E-05 5.8E-10 73.5 11.3 84 134-222 183-266 (395)
106 PRK10866 outer membrane biogen 98.1 5.4E-05 1.2E-09 66.6 12.3 89 134-223 46-157 (243)
107 PRK14574 hmsH outer membrane p 98.1 3.1E-05 6.7E-10 79.0 12.2 90 132-223 428-517 (822)
108 TIGR00540 hemY_coli hemY prote 98.1 4.5E-05 9.9E-10 71.1 12.4 84 134-219 132-216 (409)
109 KOG4642 Chaperone-dependent E3 98.1 1.6E-05 3.5E-10 70.6 8.6 87 131-219 21-107 (284)
110 KOG1840 Kinesin light chain [C 98.1 1.4E-05 3E-10 77.5 8.9 84 134-219 213-312 (508)
111 KOG2003 TPR repeat-containing 98.1 1.3E-05 2.8E-10 76.9 8.2 89 134-224 504-592 (840)
112 PF13431 TPR_17: Tetratricopep 98.1 4.2E-06 9E-11 52.2 3.3 34 177-211 1-34 (34)
113 PRK14720 transcript cleavage f 98.1 2.6E-05 5.6E-10 80.0 10.6 81 135-219 98-178 (906)
114 KOG0624 dsRNA-activated protei 98.1 1.2E-05 2.6E-10 74.9 7.4 88 134-223 52-139 (504)
115 KOG1174 Anaphase-promoting com 98.0 2.5E-05 5.4E-10 74.1 9.6 89 131-223 416-504 (564)
116 KOG1129 TPR repeat-containing 98.0 9.6E-06 2.1E-10 75.1 6.5 87 134-222 372-461 (478)
117 KOG4234 TPR repeat-containing 98.0 5.6E-05 1.2E-09 66.1 10.1 87 134-222 109-200 (271)
118 PF07719 TPR_2: Tetratricopept 98.0 1.9E-05 4.2E-10 47.5 5.1 34 154-188 1-34 (34)
119 KOG3060 Uncharacterized conser 98.0 5.3E-05 1.1E-09 67.9 9.9 88 134-223 100-187 (289)
120 KOG0550 Molecular chaperone (D 98.0 2E-05 4.3E-10 74.5 7.6 86 134-221 263-352 (486)
121 PF00515 TPR_1: Tetratricopept 98.0 1.7E-05 3.6E-10 48.2 4.5 34 154-188 1-34 (34)
122 COG1729 Uncharacterized protei 97.9 0.00014 3E-09 65.2 11.6 89 133-223 154-248 (262)
123 PF13525 YfiO: Outer membrane 97.9 0.00013 2.9E-09 61.9 11.1 90 133-223 18-123 (203)
124 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00012 2.6E-09 69.1 11.6 80 134-215 214-293 (395)
125 PF09976 TPR_21: Tetratricopep 97.9 0.00023 5E-09 56.9 11.6 81 133-215 24-110 (145)
126 PF12688 TPR_5: Tetratrico pep 97.9 8.5E-05 1.8E-09 59.1 8.9 68 154-223 1-71 (120)
127 PF13512 TPR_18: Tetratricopep 97.9 0.00017 3.6E-09 59.2 10.8 90 133-223 23-132 (142)
128 COG2956 Predicted N-acetylgluc 97.9 8.4E-05 1.8E-09 68.6 9.9 87 134-222 194-281 (389)
129 KOG1840 Kinesin light chain [C 97.9 5E-05 1.1E-09 73.7 8.7 86 132-219 253-354 (508)
130 KOG0543 FKBP-type peptidyl-pro 97.9 9.4E-05 2E-09 69.5 10.2 87 134-221 271-357 (397)
131 KOG4555 TPR repeat-containing 97.9 0.00022 4.9E-09 58.7 10.8 84 134-219 57-144 (175)
132 KOG1127 TPR repeat-containing 97.9 6.7E-05 1.4E-09 77.0 9.4 90 133-222 15-106 (1238)
133 PF04733 Coatomer_E: Coatomer 97.9 4E-05 8.7E-10 69.2 7.1 89 134-223 181-269 (290)
134 KOG4162 Predicted calmodulin-b 97.8 0.0001 2.2E-09 73.8 10.3 87 135-223 459-546 (799)
135 PRK15331 chaperone protein Sic 97.8 8.8E-05 1.9E-09 62.3 8.1 73 150-224 33-105 (165)
136 COG4785 NlpI Lipoprotein NlpI, 97.8 4.5E-05 9.8E-10 67.4 6.6 92 131-224 76-167 (297)
137 KOG2002 TPR-containing nuclear 97.8 7E-05 1.5E-09 76.5 8.9 89 133-223 283-375 (1018)
138 KOG2002 TPR-containing nuclear 97.8 8.2E-05 1.8E-09 76.0 9.2 89 134-223 321-413 (1018)
139 KOG0550 Molecular chaperone (D 97.8 4.8E-05 1E-09 71.9 6.5 88 134-223 217-320 (486)
140 PRK14720 transcript cleavage f 97.8 8.8E-05 1.9E-09 76.2 8.9 73 134-223 130-202 (906)
141 PF07719 TPR_2: Tetratricopept 97.8 7.1E-05 1.5E-09 45.0 5.1 34 189-223 1-34 (34)
142 KOG1173 Anaphase-promoting com 97.8 0.00013 2.8E-09 71.1 9.5 83 134-218 360-442 (611)
143 KOG1156 N-terminal acetyltrans 97.8 0.00011 2.3E-09 72.6 8.9 87 134-222 55-141 (700)
144 PF13424 TPR_12: Tetratricopep 97.8 3.6E-05 7.8E-10 54.8 4.3 51 133-184 18-75 (78)
145 PRK10803 tol-pal system protei 97.8 0.00028 6.2E-09 63.0 10.7 70 153-223 141-213 (263)
146 COG2956 Predicted N-acetylgluc 97.7 0.00018 3.9E-09 66.5 9.3 88 134-223 155-247 (389)
147 KOG1129 TPR repeat-containing 97.7 9.5E-05 2.1E-09 68.7 7.3 88 134-223 338-428 (478)
148 KOG2076 RNA polymerase III tra 97.7 0.00035 7.5E-09 71.0 11.7 86 134-221 187-272 (895)
149 PF00515 TPR_1: Tetratricopept 97.7 7.8E-05 1.7E-09 45.2 4.4 34 189-223 1-34 (34)
150 KOG1156 N-terminal acetyltrans 97.7 0.00013 2.9E-09 72.0 7.6 88 134-223 21-108 (700)
151 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0015 3.3E-08 49.5 11.7 86 134-221 181-267 (291)
152 PF05843 Suf: Suppressor of fo 97.6 0.0003 6.5E-09 62.9 8.7 85 136-221 17-101 (280)
153 KOG0376 Serine-threonine phosp 97.6 5.7E-05 1.2E-09 72.3 3.9 88 134-223 18-105 (476)
154 PF06552 TOM20_plant: Plant sp 97.5 0.00036 7.8E-09 59.6 7.9 62 134-196 49-121 (186)
155 COG3071 HemY Uncharacterized e 97.5 0.00099 2.1E-08 62.6 11.0 83 134-219 308-390 (400)
156 PRK10866 outer membrane biogen 97.5 0.0009 2E-08 58.9 10.3 69 153-223 31-102 (243)
157 KOG3824 Huntingtin interacting 97.5 0.00016 3.5E-09 66.8 5.4 65 132-197 128-192 (472)
158 COG4700 Uncharacterized protei 97.5 0.001 2.2E-08 57.8 9.5 87 134-222 103-192 (251)
159 PF12569 NARP1: NMDA receptor- 97.4 0.0011 2.3E-08 64.8 10.6 86 130-217 204-289 (517)
160 KOG1128 Uncharacterized conser 97.4 0.00033 7.1E-09 70.0 6.9 85 134-220 533-617 (777)
161 KOG0624 dsRNA-activated protei 97.4 0.0002 4.4E-09 66.8 5.1 89 134-223 283-374 (504)
162 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0038 8.2E-08 47.3 11.3 86 134-221 144-233 (291)
163 PF12895 Apc3: Anaphase-promot 97.4 0.00012 2.7E-09 53.0 2.8 52 168-221 2-55 (84)
164 KOG2003 TPR repeat-containing 97.4 0.0016 3.5E-08 62.9 10.6 65 134-199 538-602 (840)
165 KOG1127 TPR repeat-containing 97.3 0.00066 1.4E-08 70.0 7.9 85 133-219 575-659 (1238)
166 PF13181 TPR_8: Tetratricopept 97.3 0.00046 9.9E-09 41.6 4.3 31 155-186 2-32 (34)
167 PF12569 NARP1: NMDA receptor- 97.3 0.0012 2.6E-08 64.4 9.1 67 155-223 195-261 (517)
168 PF05843 Suf: Suppressor of fo 97.2 0.0034 7.3E-08 56.1 10.1 88 134-223 50-140 (280)
169 KOG1174 Anaphase-promoting com 97.2 0.0023 5E-08 61.0 9.2 62 134-196 314-375 (564)
170 KOG2396 HAT (Half-A-TPR) repea 97.2 0.0034 7.4E-08 60.9 10.4 86 137-223 88-173 (568)
171 PF14561 TPR_20: Tetratricopep 97.2 0.0073 1.6E-07 45.6 10.2 75 139-215 7-83 (90)
172 PF13428 TPR_14: Tetratricopep 97.1 0.00062 1.4E-08 44.1 3.8 30 133-162 14-43 (44)
173 PF13181 TPR_8: Tetratricopept 97.1 0.001 2.2E-08 40.0 4.3 34 189-223 1-34 (34)
174 PF13525 YfiO: Outer membrane 97.1 0.0048 1E-07 52.3 10.0 69 153-223 4-75 (203)
175 KOG0495 HAT repeat protein [RN 97.1 0.003 6.5E-08 63.1 9.4 98 124-223 654-752 (913)
176 KOG0545 Aryl-hydrocarbon recep 97.0 0.0051 1.1E-07 55.4 9.4 87 134-222 192-296 (329)
177 KOG1308 Hsp70-interacting prot 97.0 0.00022 4.9E-09 66.1 0.7 86 134-221 128-213 (377)
178 PF03704 BTAD: Bacterial trans 97.0 0.0079 1.7E-07 47.6 9.5 62 155-218 63-124 (146)
179 PF04733 Coatomer_E: Coatomer 97.0 0.0018 3.9E-08 58.5 6.5 88 134-223 145-234 (290)
180 KOG3824 Huntingtin interacting 97.0 0.0021 4.5E-08 59.6 6.8 56 167-223 128-183 (472)
181 PF14938 SNAP: Soluble NSF att 96.9 0.0042 9.1E-08 55.2 8.2 83 135-219 89-184 (282)
182 KOG3081 Vesicle coat complex C 96.9 0.011 2.4E-07 53.5 10.6 87 135-222 188-274 (299)
183 PF13512 TPR_18: Tetratricopep 96.8 0.015 3.2E-07 47.9 10.0 68 154-223 10-80 (142)
184 PF13176 TPR_7: Tetratricopept 96.8 0.0025 5.5E-08 39.6 4.2 27 156-183 1-27 (36)
185 smart00028 TPR Tetratricopepti 96.8 0.0023 5E-08 35.4 3.7 31 156-187 3-33 (34)
186 COG3071 HemY Uncharacterized e 96.7 0.013 2.8E-07 55.3 9.8 89 130-223 273-361 (400)
187 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.01 2.2E-07 40.8 6.6 41 155-196 2-42 (53)
188 PF10300 DUF3808: Protein of u 96.6 0.016 3.4E-07 55.8 10.3 87 132-220 245-335 (468)
189 PF14938 SNAP: Soluble NSF att 96.6 0.015 3.2E-07 51.8 9.2 88 134-222 129-228 (282)
190 PF13281 DUF4071: Domain of un 96.6 0.017 3.7E-07 54.3 9.9 90 134-224 155-260 (374)
191 KOG4555 TPR repeat-containing 96.5 0.011 2.4E-07 48.9 7.1 60 160-221 49-108 (175)
192 PF13174 TPR_6: Tetratricopept 96.5 0.006 1.3E-07 36.0 4.3 31 156-187 2-32 (33)
193 COG4105 ComL DNA uptake lipopr 96.5 0.029 6.3E-07 50.2 10.3 91 132-223 46-149 (254)
194 PRK04841 transcriptional regul 96.5 0.027 5.8E-07 56.9 11.3 85 133-219 465-560 (903)
195 KOG1070 rRNA processing protei 96.4 0.018 3.8E-07 61.5 9.7 87 134-222 1544-1632(1710)
196 KOG4648 Uncharacterized conser 96.4 0.0086 1.9E-07 56.3 6.4 61 159-221 102-162 (536)
197 COG3118 Thioredoxin domain-con 96.3 0.064 1.4E-06 49.1 11.4 88 132-221 146-267 (304)
198 KOG4507 Uncharacterized conser 96.3 0.016 3.4E-07 57.6 7.8 88 134-223 621-709 (886)
199 smart00028 TPR Tetratricopepti 96.2 0.0084 1.8E-07 33.0 3.7 33 190-223 2-34 (34)
200 KOG1310 WD40 repeat protein [G 96.2 0.018 3.9E-07 56.5 7.9 89 133-222 387-477 (758)
201 KOG0551 Hsp90 co-chaperone CNS 96.2 0.025 5.5E-07 52.7 8.4 85 134-220 95-183 (390)
202 KOG0495 HAT repeat protein [RN 96.2 0.062 1.3E-06 54.1 11.6 88 134-223 530-617 (913)
203 PF10300 DUF3808: Protein of u 96.2 0.03 6.5E-07 53.8 9.3 88 131-219 278-376 (468)
204 PF03704 BTAD: Bacterial trans 96.1 0.029 6.3E-07 44.3 7.7 49 134-183 76-124 (146)
205 COG4976 Predicted methyltransf 96.1 0.0074 1.6E-07 53.8 4.4 58 133-191 8-65 (287)
206 PLN03081 pentatricopeptide (PP 96.1 0.031 6.7E-07 55.5 9.2 81 134-218 476-556 (697)
207 PF04184 ST7: ST7 protein; In 96.1 0.029 6.4E-07 54.5 8.6 85 134-222 182-291 (539)
208 PRK10941 hypothetical protein; 96.0 0.048 1E-06 49.1 9.4 66 156-223 183-248 (269)
209 KOG1130 Predicted G-alpha GTPa 96.0 0.013 2.8E-07 56.2 6.0 85 134-220 209-305 (639)
210 PF04781 DUF627: Protein of un 96.0 0.048 1E-06 43.1 8.2 86 133-219 9-107 (111)
211 KOG2053 Mitochondrial inherita 96.0 0.048 1E-06 56.0 10.1 87 134-222 23-109 (932)
212 PF10373 EST1_DNA_bind: Est1 D 96.0 0.025 5.4E-07 49.0 7.1 62 139-201 1-62 (278)
213 KOG2796 Uncharacterized conser 96.0 0.025 5.4E-07 51.6 7.2 87 134-222 226-318 (366)
214 PF13374 TPR_10: Tetratricopep 95.9 0.02 4.4E-07 35.2 4.7 30 154-184 2-31 (42)
215 PF13176 TPR_7: Tetratricopept 95.9 0.015 3.4E-07 36.0 4.0 28 191-219 1-28 (36)
216 PF13281 DUF4071: Domain of un 95.9 0.075 1.6E-06 50.1 10.2 91 133-224 195-339 (374)
217 PLN03077 Protein ECB2; Provisi 95.9 0.059 1.3E-06 54.7 10.3 79 134-216 639-717 (857)
218 KOG1915 Cell cycle control pro 95.9 0.045 9.8E-07 53.3 8.8 95 126-222 78-173 (677)
219 COG1729 Uncharacterized protei 95.9 0.061 1.3E-06 48.4 9.1 65 157-223 144-211 (262)
220 PF08424 NRDE-2: NRDE-2, neces 95.8 0.13 2.8E-06 46.9 11.4 81 142-223 7-98 (321)
221 KOG2610 Uncharacterized conser 95.8 0.044 9.4E-07 51.5 8.2 76 137-214 154-233 (491)
222 PF14561 TPR_20: Tetratricopep 95.8 0.036 7.7E-07 41.8 6.3 50 173-223 6-55 (90)
223 PRK04841 transcriptional regul 95.6 0.061 1.3E-06 54.4 9.3 86 134-221 667-762 (903)
224 COG4976 Predicted methyltransf 95.6 0.02 4.3E-07 51.1 5.0 61 162-224 3-63 (287)
225 COG0790 FOG: TPR repeat, SEL1 95.6 0.21 4.6E-06 43.8 11.4 85 132-220 125-221 (292)
226 KOG1915 Cell cycle control pro 95.6 0.073 1.6E-06 51.9 9.0 87 134-222 451-539 (677)
227 PLN03077 Protein ECB2; Provisi 95.6 0.1 2.3E-06 53.0 10.7 86 134-223 603-690 (857)
228 COG4785 NlpI Lipoprotein NlpI, 95.6 0.035 7.5E-07 49.5 6.3 88 133-224 112-201 (297)
229 PF13174 TPR_6: Tetratricopept 95.5 0.03 6.6E-07 32.8 4.2 33 190-223 1-33 (33)
230 PLN03081 pentatricopeptide (PP 95.5 0.05 1.1E-06 54.1 7.8 50 134-185 304-355 (697)
231 PLN03218 maturation of RBCL 1; 95.4 0.19 4.2E-06 53.1 12.1 82 134-218 556-642 (1060)
232 KOG2796 Uncharacterized conser 95.3 0.11 2.4E-06 47.5 8.6 57 133-190 265-321 (366)
233 COG4105 ComL DNA uptake lipopr 95.2 0.16 3.4E-06 45.6 9.4 68 154-223 34-104 (254)
234 PLN03218 maturation of RBCL 1; 95.2 0.27 5.9E-06 52.0 12.6 83 134-220 521-609 (1060)
235 KOG1130 Predicted G-alpha GTPa 95.1 0.086 1.9E-06 50.8 7.8 84 134-219 249-344 (639)
236 COG4700 Uncharacterized protei 95.0 0.22 4.8E-06 43.5 9.5 78 134-214 138-217 (251)
237 COG3914 Spy Predicted O-linked 95.0 0.17 3.7E-06 50.1 9.7 89 134-223 81-175 (620)
238 PF09613 HrpB1_HrpK: Bacterial 95.0 0.61 1.3E-05 39.1 11.7 67 134-201 24-90 (160)
239 KOG4340 Uncharacterized conser 95.0 0.14 3E-06 47.7 8.4 81 134-216 24-104 (459)
240 PF08424 NRDE-2: NRDE-2, neces 94.8 0.62 1.3E-05 42.5 12.4 84 135-219 46-131 (321)
241 KOG3785 Uncharacterized conser 94.8 0.093 2E-06 49.7 6.9 83 132-216 34-117 (557)
242 COG5191 Uncharacterized conser 94.7 0.038 8.1E-07 51.4 4.2 62 135-196 122-183 (435)
243 PF13374 TPR_10: Tetratricopep 94.6 0.099 2.1E-06 32.0 4.7 30 189-219 2-31 (42)
244 KOG0530 Protein farnesyltransf 94.5 0.32 6.9E-06 44.3 9.5 89 134-223 57-146 (318)
245 KOG2376 Signal recognition par 94.5 0.3 6.5E-06 48.5 10.0 88 131-223 23-143 (652)
246 KOG4234 TPR repeat-containing 94.3 0.16 3.5E-06 44.8 7.0 62 134-196 148-209 (271)
247 COG2976 Uncharacterized protei 94.3 0.29 6.4E-06 42.5 8.5 88 132-222 101-191 (207)
248 KOG2396 HAT (Half-A-TPR) repea 94.3 0.45 9.7E-06 46.6 10.5 62 136-197 121-182 (568)
249 KOG1585 Protein required for f 94.3 0.44 9.5E-06 43.1 9.7 84 134-220 45-140 (308)
250 KOG1550 Extracellular protein 94.2 0.23 4.9E-06 48.7 8.7 84 133-218 262-356 (552)
251 KOG1941 Acetylcholine receptor 94.2 0.14 3.1E-06 48.6 6.8 85 134-220 136-236 (518)
252 PRK10941 hypothetical protein; 94.2 0.24 5.3E-06 44.5 8.1 59 134-193 195-253 (269)
253 KOG2376 Signal recognition par 94.1 0.46 9.9E-06 47.3 10.4 81 134-219 93-204 (652)
254 PF04184 ST7: ST7 protein; In 94.1 0.65 1.4E-05 45.5 11.2 88 134-222 273-378 (539)
255 smart00386 HAT HAT (Half-A-TPR 94.0 0.17 3.7E-06 29.1 4.7 29 135-163 2-30 (33)
256 KOG2047 mRNA splicing factor [ 94.0 0.29 6.3E-06 49.2 8.8 90 132-222 489-582 (835)
257 KOG2610 Uncharacterized conser 94.0 0.29 6.2E-06 46.2 8.3 88 134-223 117-208 (491)
258 PF09986 DUF2225: Uncharacteri 93.9 1.1 2.3E-05 39.0 11.4 84 134-219 91-194 (214)
259 KOG3785 Uncharacterized conser 93.9 0.28 6.1E-06 46.6 8.1 88 134-223 71-184 (557)
260 KOG3364 Membrane protein invol 93.7 0.54 1.2E-05 38.8 8.5 84 139-223 17-104 (149)
261 COG0790 FOG: TPR repeat, SEL1 93.6 0.8 1.7E-05 40.1 10.3 85 133-219 90-184 (292)
262 PF12968 DUF3856: Domain of Un 93.6 1.4 3.1E-05 35.8 10.6 84 134-219 23-129 (144)
263 KOG4642 Chaperone-dependent E3 93.5 0.077 1.7E-06 47.6 3.5 55 167-222 22-76 (284)
264 KOG1070 rRNA processing protei 93.2 0.66 1.4E-05 50.2 10.2 89 130-220 1574-1664(1710)
265 COG4455 ImpE Protein of avirul 93.1 1 2.2E-05 40.3 9.8 61 134-195 15-75 (273)
266 KOG4340 Uncharacterized conser 93.1 0.27 5.8E-06 45.8 6.4 68 147-216 135-204 (459)
267 PF12862 Apc5: Anaphase-promot 93.0 1 2.2E-05 33.6 8.5 56 134-190 12-76 (94)
268 PF07720 TPR_3: Tetratricopept 92.7 0.4 8.7E-06 30.2 5.1 33 155-188 2-36 (36)
269 KOG3364 Membrane protein invol 92.7 0.51 1.1E-05 39.0 7.0 63 131-194 46-110 (149)
270 KOG1550 Extracellular protein 92.7 0.98 2.1E-05 44.3 10.3 82 135-220 308-394 (552)
271 smart00386 HAT HAT (Half-A-TPR 92.5 0.4 8.6E-06 27.5 4.6 30 169-198 1-30 (33)
272 KOG3081 Vesicle coat complex C 92.4 0.84 1.8E-05 41.6 8.5 89 134-223 151-240 (299)
273 PF02259 FAT: FAT domain; Int 92.4 1.4 3E-05 39.1 10.0 89 134-223 160-291 (352)
274 KOG1586 Protein required for f 92.2 0.78 1.7E-05 41.3 8.0 83 134-218 48-142 (288)
275 PF12862 Apc5: Anaphase-promot 92.1 1.6 3.4E-05 32.6 8.6 31 189-220 41-71 (94)
276 PF14853 Fis1_TPR_C: Fis1 C-te 92.0 0.4 8.6E-06 32.9 4.7 32 191-223 3-34 (53)
277 KOG1586 Protein required for f 91.8 1.2 2.5E-05 40.2 8.6 87 134-221 87-185 (288)
278 PF00244 14-3-3: 14-3-3 protei 91.8 0.67 1.5E-05 40.7 7.2 48 136-183 142-197 (236)
279 PF04910 Tcf25: Transcriptiona 91.3 2.3 5E-05 39.7 10.6 75 147-223 33-137 (360)
280 COG5191 Uncharacterized conser 91.1 0.23 4.9E-06 46.4 3.6 81 142-223 95-175 (435)
281 KOG3617 WD40 and TPR repeat-co 91.1 1.3 2.8E-05 46.1 9.1 84 134-219 872-996 (1416)
282 PF07721 TPR_4: Tetratricopept 90.7 0.33 7.2E-06 27.9 2.8 24 155-179 2-25 (26)
283 KOG1308 Hsp70-interacting prot 90.6 0.14 3E-06 47.9 1.7 79 135-223 103-181 (377)
284 smart00101 14_3_3 14-3-3 homol 90.6 1 2.3E-05 40.0 7.2 48 136-183 144-199 (244)
285 COG2912 Uncharacterized conser 90.5 1.2 2.6E-05 40.3 7.6 56 167-223 193-248 (269)
286 KOG1941 Acetylcholine receptor 90.4 1 2.2E-05 42.9 7.3 84 134-219 176-275 (518)
287 PF08631 SPO22: Meiosis protei 90.4 3 6.6E-05 37.0 10.1 51 133-184 6-65 (278)
288 KOG1258 mRNA processing protei 90.2 2.8 6E-05 41.7 10.3 90 131-221 56-145 (577)
289 COG3914 Spy Predicted O-linked 90.0 1 2.3E-05 44.7 7.2 86 137-223 48-135 (620)
290 PF09986 DUF2225: Uncharacteri 89.6 2.4 5.1E-05 36.8 8.5 65 136-201 141-212 (214)
291 TIGR02561 HrpB1_HrpK type III 89.5 6.3 0.00014 32.9 10.5 67 134-201 24-90 (153)
292 PF11207 DUF2989: Protein of u 89.5 2.6 5.7E-05 36.7 8.6 72 137-211 123-199 (203)
293 KOG4014 Uncharacterized conser 89.3 2.1 4.6E-05 37.4 7.8 67 129-199 82-154 (248)
294 KOG0530 Protein farnesyltransf 88.9 1.8 3.9E-05 39.6 7.4 73 134-224 40-112 (318)
295 KOG0551 Hsp90 co-chaperone CNS 88.8 1.9 4.2E-05 40.4 7.7 67 155-223 82-152 (390)
296 KOG4507 Uncharacterized conser 88.4 0.54 1.2E-05 47.1 4.0 83 137-221 196-280 (886)
297 COG3898 Uncharacterized membra 88.4 3.7 8E-05 39.6 9.4 82 134-218 134-216 (531)
298 KOG0376 Serine-threonine phosp 88.2 0.69 1.5E-05 44.8 4.5 64 134-198 52-115 (476)
299 KOG1914 mRNA cleavage and poly 87.3 3.3 7.1E-05 41.2 8.6 72 144-218 10-81 (656)
300 KOG0529 Protein geranylgeranyl 87.2 4.6 0.0001 38.7 9.3 89 135-224 90-183 (421)
301 KOG2471 TPR repeat-containing 87.0 2.6 5.7E-05 41.6 7.7 67 134-201 297-381 (696)
302 COG3629 DnrI DNA-binding trans 86.9 4.3 9.3E-05 37.0 8.6 80 135-218 136-215 (280)
303 KOG2047 mRNA splicing factor [ 86.5 3.9 8.6E-05 41.5 8.8 87 135-223 83-171 (835)
304 PF07720 TPR_3: Tetratricopept 85.9 2.9 6.3E-05 26.3 5.1 33 190-223 2-36 (36)
305 PF07079 DUF1347: Protein of u 85.9 2.6 5.5E-05 41.2 7.0 50 163-215 471-520 (549)
306 KOG1258 mRNA processing protei 85.9 7.2 0.00016 38.9 10.2 89 132-222 309-398 (577)
307 PF11846 DUF3366: Domain of un 85.7 4 8.6E-05 34.0 7.4 52 134-187 125-176 (193)
308 PF07721 TPR_4: Tetratricopept 84.9 1.2 2.6E-05 25.5 2.8 25 190-215 2-26 (26)
309 TIGR02996 rpt_mate_G_obs repea 84.7 2.1 4.5E-05 28.3 4.0 33 141-174 3-35 (42)
310 PF10602 RPN7: 26S proteasome 84.3 11 0.00024 31.5 9.4 83 134-217 50-140 (177)
311 PF02259 FAT: FAT domain; Int 84.3 8.4 0.00018 34.0 9.2 67 150-218 142-212 (352)
312 COG3118 Thioredoxin domain-con 84.0 14 0.00031 34.0 10.6 71 143-215 225-297 (304)
313 PF08631 SPO22: Meiosis protei 83.7 4 8.6E-05 36.2 6.9 52 167-219 5-65 (278)
314 PF09613 HrpB1_HrpK: Bacterial 83.3 9.8 0.00021 31.9 8.6 64 157-222 13-76 (160)
315 COG2912 Uncharacterized conser 83.3 4.8 0.0001 36.5 7.1 59 134-193 195-253 (269)
316 KOG2053 Mitochondrial inherita 82.4 8.9 0.00019 40.0 9.4 57 134-192 57-113 (932)
317 KOG3617 WD40 and TPR repeat-co 82.3 7.3 0.00016 40.9 8.7 52 132-184 924-996 (1416)
318 KOG2300 Uncharacterized conser 82.0 11 0.00023 37.4 9.3 87 135-221 24-120 (629)
319 PF10345 Cohesin_load: Cohesin 81.8 21 0.00045 35.4 11.7 82 136-219 37-128 (608)
320 PF02184 HAT: HAT (Half-A-TPR) 81.5 3.1 6.8E-05 25.8 3.7 27 135-162 2-28 (32)
321 smart00101 14_3_3 14-3-3 homol 80.9 16 0.00034 32.6 9.5 48 171-218 144-199 (244)
322 KOG4014 Uncharacterized conser 80.7 4 8.6E-05 35.8 5.4 84 134-220 49-142 (248)
323 COG2976 Uncharacterized protei 80.4 17 0.00037 31.8 9.2 56 157-215 92-151 (207)
324 COG3898 Uncharacterized membra 80.3 22 0.00047 34.5 10.6 89 134-223 168-262 (531)
325 KOG4814 Uncharacterized conser 79.6 15 0.00033 37.5 9.7 57 134-191 368-430 (872)
326 PF10602 RPN7: 26S proteasome 79.1 16 0.00034 30.6 8.6 63 155-219 37-102 (177)
327 PF11846 DUF3366: Domain of un 79.0 9.9 0.00022 31.6 7.3 50 171-222 127-176 (193)
328 KOG2422 Uncharacterized conser 78.9 22 0.00047 35.8 10.5 91 130-221 352-450 (665)
329 PF04910 Tcf25: Transcriptiona 77.9 21 0.00046 33.3 9.8 89 130-221 113-224 (360)
330 PF04781 DUF627: Protein of un 77.8 8.8 0.00019 30.3 6.2 61 161-222 3-76 (111)
331 KOG3783 Uncharacterized conser 77.8 17 0.00036 36.1 9.3 72 150-222 444-523 (546)
332 PF00244 14-3-3: 14-3-3 protei 77.7 9.9 0.00021 33.4 7.2 48 171-218 142-197 (236)
333 PF10516 SHNi-TPR: SHNi-TPR; 77.4 4.4 9.5E-05 25.9 3.6 29 190-219 2-30 (38)
334 PF10579 Rapsyn_N: Rapsyn N-te 76.6 17 0.00036 27.2 7.0 54 164-219 16-72 (80)
335 smart00671 SEL1 Sel1-like repe 76.6 4.2 9E-05 23.9 3.2 14 170-183 20-33 (36)
336 KOG1585 Protein required for f 76.4 23 0.0005 32.3 9.1 82 136-219 9-100 (308)
337 KOG2300 Uncharacterized conser 75.0 27 0.00059 34.6 9.8 83 133-220 380-475 (629)
338 PF14863 Alkyl_sulf_dimr: Alky 74.3 26 0.00057 28.6 8.3 72 125-202 46-117 (141)
339 cd02681 MIT_calpain7_1 MIT: do 74.1 8.5 0.00018 28.2 4.9 31 137-183 4-34 (76)
340 KOG1914 mRNA cleavage and poly 74.0 35 0.00075 34.3 10.3 84 135-219 381-464 (656)
341 KOG2471 TPR repeat-containing 74.0 11 0.00023 37.5 6.8 61 155-217 620-682 (696)
342 PF04190 DUF410: Protein of un 74.0 38 0.00083 30.0 10.0 67 152-219 88-170 (260)
343 COG4455 ImpE Protein of avirul 73.6 13 0.00028 33.4 6.7 56 167-223 13-68 (273)
344 PF12968 DUF3856: Domain of Un 73.3 23 0.0005 28.9 7.6 62 156-218 9-83 (144)
345 PF04212 MIT: MIT (microtubule 72.3 13 0.00027 26.0 5.3 17 167-183 17-33 (69)
346 TIGR02996 rpt_mate_G_obs repea 71.8 8.5 0.00018 25.4 3.9 33 176-209 3-35 (42)
347 PF09670 Cas_Cas02710: CRISPR- 71.1 72 0.0016 29.9 11.6 50 134-183 145-197 (379)
348 PF08238 Sel1: Sel1 repeat; I 70.7 16 0.00035 21.8 4.9 14 171-184 24-37 (39)
349 PRK15180 Vi polysaccharide bio 70.4 34 0.00073 34.2 9.3 45 134-179 303-347 (831)
350 KOG3807 Predicted membrane pro 70.1 39 0.00084 32.3 9.3 83 135-221 199-306 (556)
351 KOG0529 Protein geranylgeranyl 69.8 48 0.001 31.9 10.0 88 137-224 46-145 (421)
352 COG2909 MalT ATP-dependent tra 68.6 41 0.00089 35.3 9.9 84 134-219 429-526 (894)
353 PF02184 HAT: HAT (Half-A-TPR) 68.5 11 0.00024 23.4 3.7 27 170-197 2-28 (32)
354 KOG0545 Aryl-hydrocarbon recep 68.1 17 0.00037 33.3 6.3 67 125-192 234-301 (329)
355 PF10516 SHNi-TPR: SHNi-TPR; 68.0 10 0.00022 24.2 3.6 30 155-185 2-31 (38)
356 PF10579 Rapsyn_N: Rapsyn N-te 67.8 27 0.00059 26.1 6.4 50 134-184 20-72 (80)
357 PHA02537 M terminase endonucle 67.7 33 0.00072 30.3 8.1 89 133-222 96-210 (230)
358 PF04212 MIT: MIT (microtubule 67.6 8.9 0.00019 26.8 3.7 14 172-185 3-16 (69)
359 COG3629 DnrI DNA-binding trans 67.5 17 0.00038 33.0 6.4 51 133-184 166-216 (280)
360 KOG4814 Uncharacterized conser 67.1 21 0.00045 36.6 7.2 66 155-223 356-427 (872)
361 cd02683 MIT_1 MIT: domain cont 66.8 14 0.00031 26.9 4.7 38 136-189 3-47 (77)
362 PRK13184 pknD serine/threonine 66.6 31 0.00066 36.5 8.7 86 135-222 534-623 (932)
363 PF10345 Cohesin_load: Cohesin 65.4 69 0.0015 31.7 10.7 85 134-220 74-169 (608)
364 PRK15490 Vi polysaccharide bio 64.6 29 0.00063 34.8 7.8 43 134-179 56-98 (578)
365 cd02680 MIT_calpain7_2 MIT: do 64.0 17 0.00036 26.7 4.6 34 135-184 2-35 (75)
366 COG4941 Predicted RNA polymera 63.4 36 0.00079 32.3 7.7 86 134-222 310-397 (415)
367 PF05053 Menin: Menin; InterP 62.0 40 0.00086 33.9 8.1 65 152-218 275-346 (618)
368 cd02677 MIT_SNX15 MIT: domain 61.8 12 0.00027 27.2 3.6 32 137-184 4-35 (75)
369 TIGR03504 FimV_Cterm FimV C-te 61.4 18 0.00039 23.8 3.9 26 157-183 2-27 (44)
370 cd02678 MIT_VPS4 MIT: domain c 61.2 25 0.00053 25.2 5.1 14 136-149 3-16 (75)
371 PRK13184 pknD serine/threonine 61.1 71 0.0015 33.9 10.2 88 134-223 489-585 (932)
372 cd02680 MIT_calpain7_2 MIT: do 61.1 19 0.00042 26.4 4.5 16 170-185 2-17 (75)
373 cd02678 MIT_VPS4 MIT: domain c 60.6 25 0.00054 25.2 5.0 26 157-183 9-34 (75)
374 smart00745 MIT Microtubule Int 60.3 18 0.00039 25.6 4.2 18 166-183 19-36 (77)
375 cd02683 MIT_1 MIT: domain cont 59.3 26 0.00057 25.5 5.0 41 171-222 3-45 (77)
376 PF11207 DUF2989: Protein of u 59.2 23 0.0005 30.9 5.3 41 134-175 154-198 (203)
377 PF15015 NYD-SP12_N: Spermatog 59.1 56 0.0012 32.0 8.3 78 134-213 190-285 (569)
378 cd02656 MIT MIT: domain contai 59.0 19 0.00042 25.5 4.2 18 166-183 17-34 (75)
379 KOG0546 HSP90 co-chaperone CPR 59.0 6.7 0.00014 37.0 2.1 66 156-223 277-342 (372)
380 cd02682 MIT_AAA_Arch MIT: doma 58.8 18 0.00039 26.6 4.0 41 137-193 4-51 (75)
381 KOG1310 WD40 repeat protein [G 58.5 12 0.00027 37.4 4.0 57 134-191 425-481 (758)
382 TIGR02561 HrpB1_HrpK type III 58.3 63 0.0014 27.0 7.5 54 167-221 22-75 (153)
383 COG3947 Response regulator con 58.0 21 0.00046 33.3 5.1 58 157-216 282-339 (361)
384 PRK15490 Vi polysaccharide bio 57.9 28 0.0006 34.9 6.4 77 134-214 22-98 (578)
385 KOG0890 Protein kinase of the 57.9 42 0.0009 38.8 8.2 81 136-220 1645-1732(2382)
386 KOG4279 Serine/threonine prote 57.2 34 0.00074 35.8 6.9 90 134-224 301-400 (1226)
387 smart00745 MIT Microtubule Int 56.4 34 0.00074 24.1 5.1 45 135-188 4-48 (77)
388 cd02679 MIT_spastin MIT: domai 56.0 25 0.00054 26.0 4.4 34 134-183 3-36 (79)
389 COG5107 RNA14 Pre-mRNA 3'-end 56.0 45 0.00097 33.0 7.2 75 142-218 30-104 (660)
390 PF09670 Cas_Cas02710: CRISPR- 55.9 85 0.0018 29.4 9.0 59 159-219 136-198 (379)
391 PF08311 Mad3_BUB1_I: Mad3/BUB 55.9 61 0.0013 25.5 7.0 73 137-217 43-126 (126)
392 PF13226 DUF4034: Domain of un 55.8 72 0.0016 29.0 8.2 60 138-197 61-141 (277)
393 PF12854 PPR_1: PPR repeat 55.3 30 0.00065 20.9 4.0 25 155-180 8-32 (34)
394 cd02656 MIT MIT: domain contai 54.3 27 0.00059 24.7 4.3 44 136-188 3-46 (75)
395 PF04053 Coatomer_WDAD: Coatom 54.1 57 0.0012 31.4 7.7 31 186-217 344-374 (443)
396 PRK15326 type III secretion sy 54.1 90 0.002 23.3 7.2 32 168-199 20-51 (80)
397 COG4649 Uncharacterized protei 53.3 86 0.0019 27.4 7.8 82 134-218 108-195 (221)
398 KOG2422 Uncharacterized conser 52.8 1.9E+02 0.0042 29.4 11.1 88 134-222 252-374 (665)
399 PF09797 NatB_MDM20: N-acetylt 52.7 1.3E+02 0.0027 27.7 9.5 45 170-215 198-242 (365)
400 cd02679 MIT_spastin MIT: domai 52.7 28 0.00062 25.7 4.2 18 169-186 3-20 (79)
401 KOG4279 Serine/threonine prote 52.2 17 0.00036 37.9 3.8 89 131-220 254-351 (1226)
402 COG5107 RNA14 Pre-mRNA 3'-end 52.2 69 0.0015 31.8 7.8 81 136-217 413-493 (660)
403 smart00299 CLH Clathrin heavy 51.8 71 0.0015 24.6 6.7 44 134-179 21-64 (140)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 50.5 1.2E+02 0.0027 23.8 9.2 44 138-182 81-126 (126)
405 COG3947 Response regulator con 49.5 84 0.0018 29.4 7.6 19 203-221 292-310 (361)
406 cd02677 MIT_SNX15 MIT: domain 49.3 99 0.0022 22.4 8.5 14 134-147 20-33 (75)
407 PF07079 DUF1347: Protein of u 49.1 45 0.00098 32.9 6.0 45 134-180 476-520 (549)
408 PF10952 DUF2753: Protein of u 48.4 49 0.0011 27.1 5.3 55 134-189 15-88 (140)
409 cd02684 MIT_2 MIT: domain cont 48.3 48 0.001 23.9 4.8 19 166-184 17-35 (75)
410 KOG3783 Uncharacterized conser 48.2 77 0.0017 31.6 7.5 80 136-219 249-332 (546)
411 cd02684 MIT_2 MIT: domain cont 47.8 55 0.0012 23.6 5.1 46 135-189 2-47 (75)
412 PF12753 Nro1: Nuclear pore co 47.5 30 0.00065 33.1 4.5 48 171-220 334-392 (404)
413 KOG0546 HSP90 co-chaperone CPR 47.2 21 0.00046 33.7 3.4 62 135-197 290-351 (372)
414 KOG3540 Beta amyloid precursor 47.1 45 0.00098 32.9 5.7 59 134-192 326-385 (615)
415 KOG0128 RNA-binding protein SA 46.4 1.8E+02 0.0038 30.7 10.0 84 134-218 127-218 (881)
416 TIGR02710 CRISPR-associated pr 45.8 2.3E+02 0.0049 27.0 10.1 46 134-179 144-195 (380)
417 KOG2997 F-box protein FBX9 [Ge 45.1 31 0.00066 32.4 4.1 42 136-193 16-57 (366)
418 COG2015 Alkyl sulfatase and re 44.6 1.3E+02 0.0029 30.0 8.4 72 125-202 428-499 (655)
419 PF10255 Paf67: RNA polymerase 44.6 45 0.00098 32.0 5.3 26 156-182 166-191 (404)
420 PRK11619 lytic murein transgly 44.1 1.3E+02 0.0028 30.5 8.7 51 167-218 324-374 (644)
421 PF13226 DUF4034: Domain of un 43.9 1.6E+02 0.0034 26.8 8.4 91 133-223 13-132 (277)
422 KOG2581 26S proteasome regulat 43.4 56 0.0012 31.8 5.6 56 134-190 223-282 (493)
423 cd02681 MIT_calpain7_1 MIT: do 43.2 20 0.00044 26.2 2.2 20 130-149 16-35 (76)
424 COG2909 MalT ATP-dependent tra 43.0 2E+02 0.0042 30.5 9.8 55 133-188 471-530 (894)
425 PF10952 DUF2753: Protein of u 42.7 1.4E+02 0.0031 24.4 7.1 60 157-218 4-78 (140)
426 KOG0128 RNA-binding protein SA 41.6 2.4E+02 0.0052 29.8 10.1 81 137-218 96-178 (881)
427 PF09205 DUF1955: Domain of un 41.5 1.3E+02 0.0029 25.0 6.9 84 129-218 65-148 (161)
428 KOG3807 Predicted membrane pro 41.3 67 0.0015 30.8 5.7 49 168-219 197-245 (556)
429 PF12753 Nro1: Nuclear pore co 41.0 38 0.00083 32.4 4.2 30 134-165 332-361 (404)
430 cd02682 MIT_AAA_Arch MIT: doma 40.8 1.4E+02 0.0031 21.8 7.8 18 131-148 17-34 (75)
431 KOG0985 Vesicle coat protein c 40.8 1.9E+02 0.004 31.8 9.3 60 152-218 1102-1161(1666)
432 KOG0276 Vesicle coat complex C 40.7 1.8E+02 0.004 29.8 8.9 65 150-215 662-746 (794)
433 PF12583 TPPII_N: Tripeptidyl 39.9 90 0.002 25.6 5.6 31 168-198 89-119 (139)
434 PF09797 NatB_MDM20: N-acetylt 39.9 75 0.0016 29.2 5.9 46 134-180 197-242 (365)
435 KOG2581 26S proteasome regulat 39.5 65 0.0014 31.3 5.4 55 168-223 222-280 (493)
436 PF11817 Foie-gras_1: Foie gra 39.3 2.6E+02 0.0056 24.3 9.5 50 134-184 152-207 (247)
437 PF13041 PPR_2: PPR repeat fam 38.4 91 0.002 19.7 4.6 29 155-184 4-32 (50)
438 PF07219 HemY_N: HemY protein 37.6 1.8E+02 0.0039 22.0 7.0 27 167-193 71-97 (108)
439 PF13830 DUF4192: Domain of un 37.2 1.9E+02 0.0041 26.2 8.0 55 136-191 254-310 (324)
440 PF14852 Fis1_TPR_N: Fis1 N-te 36.8 19 0.00041 22.6 1.0 29 155-184 2-33 (35)
441 PF15015 NYD-SP12_N: Spermatog 36.1 1.7E+02 0.0038 28.8 7.7 75 134-211 242-319 (569)
442 PF09205 DUF1955: Domain of un 36.0 2.6E+02 0.0056 23.4 8.2 51 134-185 100-150 (161)
443 PF01535 PPR: PPR repeat; Int 35.8 66 0.0014 17.6 3.2 14 168-181 13-26 (31)
444 COG3107 LppC Putative lipoprot 34.8 1.7E+02 0.0037 29.4 7.6 81 136-216 44-125 (604)
445 KOG3616 Selective LIM binding 34.0 64 0.0014 34.0 4.7 76 135-213 978-1057(1636)
446 PF04053 Coatomer_WDAD: Coatom 34.0 74 0.0016 30.7 5.0 39 143-182 334-374 (443)
447 PRK15180 Vi polysaccharide bio 33.9 2E+02 0.0043 29.0 7.8 86 134-220 712-806 (831)
448 PF01239 PPTA: Protein prenylt 33.4 1E+02 0.0022 17.9 4.9 25 174-198 2-26 (31)
449 TIGR02710 CRISPR-associated pr 32.1 2.4E+02 0.0052 26.9 8.0 54 160-215 136-196 (380)
450 PF07219 HemY_N: HemY protein 32.1 1E+02 0.0023 23.4 4.7 36 134-170 73-108 (108)
451 COG4941 Predicted RNA polymera 30.7 1.9E+02 0.0041 27.6 6.9 41 155-196 366-406 (415)
452 KOG0276 Vesicle coat complex C 30.5 1.3E+02 0.0028 30.8 6.1 69 140-219 627-695 (794)
453 PF04090 RNA_pol_I_TF: RNA pol 30.1 2.5E+02 0.0053 24.4 7.1 52 167-218 53-104 (199)
454 PF14863 Alkyl_sulf_dimr: Alky 30.1 1.3E+02 0.0028 24.5 5.2 32 134-165 84-115 (141)
455 KOG0739 AAA+-type ATPase [Post 29.9 1.5E+02 0.0032 28.1 6.0 13 137-149 8-20 (439)
456 TIGR00756 PPR pentatricopeptid 29.4 1.1E+02 0.0023 16.9 4.0 15 168-182 13-27 (35)
457 PF02064 MAS20: MAS20 protein 29.1 1.3E+02 0.0029 24.0 4.9 36 159-195 68-103 (121)
458 KOG0889 Histone acetyltransfer 28.7 1.1E+02 0.0024 37.0 5.8 80 134-216 2826-2912(3550)
459 PF05053 Menin: Menin; InterP 26.4 1.6E+02 0.0035 29.7 5.9 49 134-183 293-346 (618)
460 KOG0739 AAA+-type ATPase [Post 26.1 4.1E+02 0.0089 25.3 8.1 18 131-148 21-38 (439)
461 KOG1464 COP9 signalosome, subu 26.0 2.4E+02 0.0051 26.5 6.5 54 129-183 36-93 (440)
462 KOG2758 Translation initiation 25.9 3E+02 0.0065 26.3 7.2 77 138-217 113-194 (432)
463 KOG2041 WD40 repeat protein [G 25.5 1.2E+02 0.0027 31.7 5.0 13 134-146 748-760 (1189)
464 KOG0890 Protein kinase of the 24.2 7.1E+02 0.015 29.6 10.8 86 133-222 1683-1787(2382)
465 KOG2067 Mitochondrial processi 24.2 1.6E+02 0.0034 28.7 5.2 53 170-223 370-423 (472)
466 KOG1811 Predicted Zn2+-binding 24.2 2.7E+02 0.0058 28.9 7.0 65 155-221 588-655 (1141)
467 KOG3973 Uncharacterized conser 23.2 1.2E+02 0.0026 28.9 4.2 11 84-94 332-343 (465)
468 PF12925 APP_E2: E2 domain of 23.2 1.1E+02 0.0024 26.5 3.7 56 136-191 113-169 (193)
469 PF12925 APP_E2: E2 domain of 22.6 1.7E+02 0.0036 25.4 4.7 53 169-221 111-164 (193)
470 KOG0292 Vesicle coat complex C 22.6 1.9E+02 0.004 31.1 5.7 43 134-182 657-699 (1202)
471 PHA02537 M terminase endonucle 22.5 1.2E+02 0.0026 26.8 3.9 20 169-188 192-211 (230)
472 KOG2908 26S proteasome regulat 22.4 5.8E+02 0.013 24.4 8.4 81 134-218 89-182 (380)
473 KOG0687 26S proteasome regulat 22.3 4E+02 0.0086 25.4 7.3 46 138-184 82-133 (393)
474 COG1747 Uncharacterized N-term 22.0 6.5E+02 0.014 25.6 9.1 42 140-183 118-159 (711)
475 KOG4563 Cell cycle-regulated h 21.5 1.9E+02 0.0041 27.7 5.1 42 160-202 47-96 (400)
476 KOG1839 Uncharacterized protei 21.2 1.7E+02 0.0037 32.1 5.3 81 137-219 955-1044(1236)
477 cd00280 TRFH Telomeric Repeat 21.1 5.6E+02 0.012 22.3 8.8 64 135-199 84-154 (200)
478 KOG2114 Vacuolar assembly/sort 21.0 1.1E+02 0.0025 32.1 3.9 28 155-183 369-396 (933)
479 KOG0985 Vesicle coat protein c 20.5 4.4E+02 0.0095 29.1 7.9 47 164-216 1084-1130(1666)
480 COG4649 Uncharacterized protei 20.4 3.2E+02 0.007 23.9 5.9 49 150-200 163-211 (221)
481 PF10607 CLTH: CTLH/CRA C-term 20.3 3.5E+02 0.0075 20.9 5.9 48 133-182 14-67 (145)
482 KOG3540 Beta amyloid precursor 20.0 5.2E+02 0.011 25.8 7.8 54 169-222 326-380 (615)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.54 E-value=7.3e-14 Score=112.93 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.+++++|..+|++++..+|.++.+++++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+..
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~ 114 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREA 114 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHH
Confidence 378999999999999999999999999999987 69999999999999999999999999999998865 6899999999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
|++|++++|++
T Consensus 115 ~~~Al~~~p~~ 125 (144)
T PRK15359 115 FQTAIKMSYAD 125 (144)
T ss_pred HHHHHHhCCCC
Confidence 99999999986
No 2
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.38 E-value=5.6e-12 Score=116.11 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.+++++|+.+|++||+++|+++.+++++|.++. ..|++++|+.+|++||.++|+++.+++.+|.+++. .|++++|+.+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHHH
Confidence 369999999999999999999999999999987 69999999999999999999999999999988876 5799999999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
|++|++++|++
T Consensus 93 ~~~al~l~P~~ 103 (356)
T PLN03088 93 LEKGASLAPGD 103 (356)
T ss_pred HHHHHHhCCCC
Confidence 99999999986
No 3
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.37 E-value=8e-12 Score=97.23 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|..+|++++..+|.++.++.++|.++. .+|++++|+.+|+++++.+|.++.++..+|.+++. .+++++|+.+|
T Consensus 31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 108 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPESALKAL 108 (135)
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 68999999999999999999999999999987 68999999999999999999999999999998876 57999999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+++++++|++
T Consensus 109 ~~al~~~p~~ 118 (135)
T TIGR02552 109 DLAIEICGEN 118 (135)
T ss_pred HHHHHhcccc
Confidence 9999999976
No 4
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=8.8e-12 Score=111.53 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.+++++|+..|++|++.+|+++.+++++|.++. ..|++++|++.|++|++++|++..++.++|.+++. .|++++|+..
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~ 154 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDD 154 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 368999999999999999999999999999887 69999999999999999999999999999988865 5799999999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
|+++++++|++
T Consensus 155 ~~~al~~~P~~ 165 (296)
T PRK11189 155 LLAFYQDDPND 165 (296)
T ss_pred HHHHHHhCCCC
Confidence 99999999986
No 5
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=2.9e-12 Score=115.41 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.++|.+|+..|.+||+++|.|+.+|-|-|.+|. ..|.++.|++-+++||.+||++..+|..||.+++. .|++++|++.
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~a 171 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEA 171 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHH
Confidence 379999999999999999999999999999987 69999999999999999999999999999999876 5789999999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
|++||.++|++
T Consensus 172 ykKaLeldP~N 182 (304)
T KOG0553|consen 172 YKKALELDPDN 182 (304)
T ss_pred HHhhhccCCCc
Confidence 99999999986
No 6
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.35 E-value=1.3e-11 Score=105.01 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD--FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd--~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
++++.|+.+|++|++++|+++.++.++|.+++...|+ +++|+++|++|++.+|++..+++++|..++. .|++++|+.
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~ 165 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADYAQAIE 165 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHH
Confidence 5777777777777777777777777777765334555 4777777777777777777777777776654 567777777
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
+|+++++++|.+
T Consensus 166 ~~~~aL~l~~~~ 177 (198)
T PRK10370 166 LWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHhhCCCC
Confidence 777777777653
No 7
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.33 E-value=7.2e-12 Score=87.68 Aligned_cols=68 Identities=25% Similarity=0.296 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 027404 152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK-DAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 152 ~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g-d~eeA~~~ferAL~l~P 221 (224)
.++.+|..+|.++. ..+++++|+.+|++||+++|+++.++.++|.+++.+ + ++++|+.+|++|++++|
T Consensus 1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHcCc
Confidence 46899999999998 699999999999999999999999999999998764 6 79999999999999998
No 8
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.32 E-value=2.6e-11 Score=103.23 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--hHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD--APRAK 210 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd--~eeA~ 210 (224)
.++.++++..|+++|+.+|+|++.|..+|.++. ..|++++|+.+|++|++++|+++.++..+|.+++...++ +++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 467899999999999999999999999999887 799999999999999999999999999999987555566 59999
Q ss_pred HHHHHHHHhCCCC
Q 027404 211 SYFDRAVHSAPDD 223 (224)
Q Consensus 211 ~~ferAL~l~P~d 223 (224)
..|+++++++|++
T Consensus 131 ~~l~~al~~dP~~ 143 (198)
T PRK10370 131 EMIDKALALDANE 143 (198)
T ss_pred HHHHHHHHhCCCC
Confidence 9999999999986
No 9
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=2.6e-11 Score=117.14 Aligned_cols=90 Identities=10% Similarity=0.097 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
..+++++|+.++++|++++|+++.++..+|.++. .+|++++|+++|++|++++|+++.++..+|.++.. .|++++|+.
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence 3457899999999999999999999999999887 69999999999999999999999999999988765 689999999
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
+|++|++++|++
T Consensus 394 ~~~~Al~l~P~~ 405 (553)
T PRK12370 394 TINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCC
Confidence 999999999985
No 10
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.28 E-value=4e-11 Score=99.57 Aligned_cols=87 Identities=11% Similarity=-0.066 Sum_probs=81.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
-.|++++|+..|+-++.+||.++..|++||.++. .+|++++|+.+|.+|+.++|+|+.++.++|.+++. .|+.+.|..
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~ 124 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIK 124 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHH
Confidence 3489999999999999999999999999999886 79999999999999999999999999999999876 578999999
Q ss_pred HHHHHHHhC
Q 027404 212 YFDRAVHSA 220 (224)
Q Consensus 212 ~ferAL~l~ 220 (224)
.|+.|+...
T Consensus 125 aF~~Ai~~~ 133 (157)
T PRK15363 125 ALKAVVRIC 133 (157)
T ss_pred HHHHHHHHh
Confidence 999999865
No 11
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=3e-11 Score=105.88 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++..|.+.+++||+.||++..+|..+|.++. ..|+.+.|.+.|++|+.++|++.++++|||.+++.+ |++++|..+|
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q-g~~~eA~q~F 126 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ-GRPEEAMQQF 126 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC-CChHHHHHHH
Confidence 68888888888888888888888888887664 788888888888888888888888888888888764 4777777777
Q ss_pred HHHHH
Q 027404 214 DRAVH 218 (224)
Q Consensus 214 erAL~ 218 (224)
++|+.
T Consensus 127 ~~Al~ 131 (250)
T COG3063 127 ERALA 131 (250)
T ss_pred HHHHh
Confidence 77775
No 12
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=3.7e-11 Score=105.25 Aligned_cols=87 Identities=25% Similarity=0.339 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~ 210 (224)
++.+.|.+.|++|+.++|++.++++|||.||+ .+|++++|.++|++|+. +|.+ +..+.|+|.|.+. .|+++.|.
T Consensus 83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~-~gq~~~A~ 159 (250)
T COG3063 83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALK-AGQFDQAE 159 (250)
T ss_pred CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhh-cCCchhHH
Confidence 78899999999999999999999999999999 69999999999999995 4654 5678899987765 57899999
Q ss_pred HHHHHHHHhCCCC
Q 027404 211 SYFDRAVHSAPDD 223 (224)
Q Consensus 211 ~~ferAL~l~P~d 223 (224)
++|+++++++|+.
T Consensus 160 ~~l~raL~~dp~~ 172 (250)
T COG3063 160 EYLKRALELDPQF 172 (250)
T ss_pred HHHHHHHHhCcCC
Confidence 9999999999985
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.23 E-value=4.9e-11 Score=116.24 Aligned_cols=87 Identities=16% Similarity=0.238 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
|.++.|+..|+|||+++|+.++++.|+|+++.+ .|+..+|+.||.+|+.+.|+++++++++|+++.++ +.+++|..+|
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~-~~~e~A~~ly 377 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ-GKIEEATRLY 377 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-ccchHHHHHH
Confidence 688999999999999999999999999999984 89999999999999999999999999999887664 5677777777
Q ss_pred HHHHHhCCC
Q 027404 214 DRAVHSAPD 222 (224)
Q Consensus 214 erAL~l~P~ 222 (224)
++|+++.|+
T Consensus 378 ~~al~v~p~ 386 (966)
T KOG4626|consen 378 LKALEVFPE 386 (966)
T ss_pred HHHHhhChh
Confidence 777777774
No 14
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.23 E-value=1.5e-10 Score=79.31 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.+++++|+.+|+++++.+|.+..++..+|.++. ..+++++|+.+|++++...|.+..++..++.++.. .+++++|..+
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~ 90 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEALEA 90 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHHHH
Confidence 368999999999999999999999999999987 68999999999999999999999999999988766 4789999999
Q ss_pred HHHHHHhCCC
Q 027404 213 FDRAVHSAPD 222 (224)
Q Consensus 213 ferAL~l~P~ 222 (224)
+++++++.|+
T Consensus 91 ~~~~~~~~~~ 100 (100)
T cd00189 91 YEKALELDPN 100 (100)
T ss_pred HHHHHccCCC
Confidence 9999999884
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.21 E-value=3.9e-11 Score=116.90 Aligned_cols=88 Identities=23% Similarity=0.222 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|+.||+++|..++++.|+|..+. .+|+..+|+++|.|||.++|..++++.++|.++.+ .|+..+|+..|
T Consensus 402 gnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-sGni~~AI~sY 479 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-SGNIPEAIQSY 479 (966)
T ss_pred ccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-cCCcHHHHHHH
Confidence 56677777777777777777777777777766 46777777777777777777777777777765544 46677777777
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+.|++++|+.
T Consensus 480 ~~aLklkPDf 489 (966)
T KOG4626|consen 480 RTALKLKPDF 489 (966)
T ss_pred HHHHccCCCC
Confidence 7777777763
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.20 E-value=1.1e-10 Score=94.38 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
-+.+|++||+++|++ ++++|.++. ..|++++|+.+|++++.++|.+..+|..+|.++.. .|++++|+.+|++|++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 467999999999986 567788887 69999999999999999999999999999998765 5789999999999999
Q ss_pred hCCCC
Q 027404 219 SAPDD 223 (224)
Q Consensus 219 l~P~d 223 (224)
++|++
T Consensus 87 l~p~~ 91 (144)
T PRK15359 87 LDASH 91 (144)
T ss_pred cCCCC
Confidence 99986
No 17
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=1e-09 Score=82.33 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCh
Q 027404 133 GKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDA 206 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~ 206 (224)
.+++++|+.+|+++++.+|++ +.+++.+|.++. ..|++++|+.+|++++...|++ +.++..+|.++.. .+++
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~ 92 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LGDK 92 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hCCh
Confidence 478999999999999999987 578999999987 6999999999999999999885 6788889988766 5789
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027404 207 PRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 207 eeA~~~ferAL~l~P~d 223 (224)
++|+.+|+++++..|++
T Consensus 93 ~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 93 EKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 99999999999999975
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.14 E-value=4.1e-10 Score=115.98 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|++|++++|+++.++.++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+.+|
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 57777777777777777777777777777766 47777777777777777777777777777776644 46777777777
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
++|++++|+.
T Consensus 701 ~~Al~l~P~~ 710 (987)
T PRK09782 701 RLVIDDIDNQ 710 (987)
T ss_pred HHHHhcCCCC
Confidence 7777777764
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.13 E-value=5.5e-10 Score=108.66 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|++||+++|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.+++. .|++++|+.+|
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~ 422 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDY 422 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 67888888888888888888888888887776 57888888888888888888888888888877655 46788888888
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+++++++|++
T Consensus 423 ~kal~l~P~~ 432 (615)
T TIGR00990 423 QKSIDLDPDF 432 (615)
T ss_pred HHHHHcCccC
Confidence 8888888864
No 20
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.12 E-value=2.8e-10 Score=78.93 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 158 ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 158 ~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+.+|..++ ..|++++|+++|+++++.+|+++.++..+|.+++. .|++++|+.+|+++++++|++
T Consensus 1 ~~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence 35677777 59999999999999999999999999999998875 678999999999999999986
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.10 E-value=9.5e-10 Score=106.99 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|++||+.+|+++.+++++|.++. ..|++++|+.+|++|++++|++..++..+|.++.. .|++++|+.+|
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~ 456 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMATF 456 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 57788888888888888888888888887776 57888888888888888888887777777776654 46777777777
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+++++..|++
T Consensus 457 ~~al~~~P~~ 466 (615)
T TIGR00990 457 RRCKKNFPEA 466 (615)
T ss_pred HHHHHhCCCC
Confidence 7777777764
No 22
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.09 E-value=6.7e-10 Score=86.34 Aligned_cols=81 Identities=15% Similarity=0.074 Sum_probs=75.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 027404 141 VYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 141 ~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~ 220 (224)
++|+++++.+|++..+.+.+|.++. ..|++++|+++|++++..+|+++.++..+|.++... +++++|+.+|+++++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999987 699999999999999999999999999999988764 78999999999999999
Q ss_pred CCC
Q 027404 221 PDD 223 (224)
Q Consensus 221 P~d 223 (224)
|++
T Consensus 82 p~~ 84 (135)
T TIGR02552 82 PDD 84 (135)
T ss_pred CCC
Confidence 976
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=6.1e-11 Score=115.47 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
++++.|+++|+|||++||+++.++..+|.=+. .+.++++|..||++||.++|.|..||+-+|.++.. .++++.|+-.|
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek~e~Ae~~f 512 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEKLEFAEFHF 512 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cchhhHHHHHH
Confidence 45555555555555555555555555544333 34455555555555555555555555555554433 23445555555
Q ss_pred HHHHHhCCC
Q 027404 214 DRAVHSAPD 222 (224)
Q Consensus 214 erAL~l~P~ 222 (224)
++|+.+||.
T Consensus 513 qkA~~INP~ 521 (638)
T KOG1126|consen 513 QKAVEINPS 521 (638)
T ss_pred HhhhcCCcc
Confidence 555555554
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=1.2e-09 Score=105.58 Aligned_cols=88 Identities=14% Similarity=0.031 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.+++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|++|++++|.++.++..++.+++. .+++++|+.+
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHHHH
Confidence 378999999999999999999999999999987 69999999999999999999998876666655554 5789999999
Q ss_pred HHHHHHhC-CC
Q 027404 213 FDRAVHSA-PD 222 (224)
Q Consensus 213 ferAL~l~-P~ 222 (224)
++++++.+ |+
T Consensus 429 ~~~~l~~~~p~ 439 (553)
T PRK12370 429 GDELRSQHLQD 439 (553)
T ss_pred HHHHHHhcccc
Confidence 99999875 44
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.06 E-value=3e-09 Score=86.28 Aligned_cols=84 Identities=24% Similarity=0.407 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|+++++.+|+++.++..+|.++. .+|++++|+++|+++++.+|++..++.+++.++.. .+++++|+.+|
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~ 122 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQF 122 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHHH
Confidence 67888888888888888888888888888776 58888888888888888888888888777776654 46777777777
Q ss_pred HHHHHh
Q 027404 214 DRAVHS 219 (224)
Q Consensus 214 erAL~l 219 (224)
++++..
T Consensus 123 ~~~~~~ 128 (234)
T TIGR02521 123 EQAIED 128 (234)
T ss_pred HHHHhc
Confidence 777764
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.05 E-value=1.8e-09 Score=111.29 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|++|++++|+ +.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+++|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 7999999999999999996 999999999887 69999999999999999999999999999988766 57899999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
++|++++|++
T Consensus 667 ~~AL~l~P~~ 676 (987)
T PRK09782 667 ERAHKGLPDD 676 (987)
T ss_pred HHHHHhCCCC
Confidence 9999999986
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=3e-10 Score=110.74 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
.+++.|..+|++||..||.|..+|+.+|.++. ++++++.|+-+|++|+++||.+...+..+|.++.. .|+.++|+.+|
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~ 546 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLY 546 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHH
Confidence 68999999999999999999999999999987 79999999999999999999999999999988755 57899999999
Q ss_pred HHHHHhCCCCC
Q 027404 214 DRAVHSAPDDW 224 (224)
Q Consensus 214 erAL~l~P~d~ 224 (224)
++|+.++|.|.
T Consensus 547 ~~A~~ld~kn~ 557 (638)
T KOG1126|consen 547 EKAIHLDPKNP 557 (638)
T ss_pred HHHHhcCCCCc
Confidence 99999999863
No 28
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.04 E-value=6.8e-10 Score=81.11 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~--na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
.++++.|+.+|+++++.+|. +..+++.+|.+++ ..|++++|+.++++ +..+|.+...+..+|.+++.+ +++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l-~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL-GKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT-T-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh-CCHHHHH
Confidence 36899999999999999995 5678888999998 69999999999999 889999989988999998875 7899999
Q ss_pred HHHHHH
Q 027404 211 SYFDRA 216 (224)
Q Consensus 211 ~~ferA 216 (224)
..|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999986
No 29
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.03 E-value=2.9e-09 Score=87.63 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----
Q 027404 134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD----- 205 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd----- 205 (224)
+++++|+.+|++|++++|+. +.+++++|.++. ..|++++|+.+|++|+..+|++..++..+|.++... ++
T Consensus 49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~a~ 126 (172)
T PRK02603 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR-GEKAEEA 126 (172)
T ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHhHh
Confidence 79999999999999988764 478999999887 699999999999999999999999999999887653 34
Q ss_pred ---------hHHHHHHHHHHHHhCCCC
Q 027404 206 ---------APRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 206 ---------~eeA~~~ferAL~l~P~d 223 (224)
+++|++++++++.++|++
T Consensus 127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 127 GDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 678889999999999975
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=7e-09 Score=84.05 Aligned_cols=88 Identities=25% Similarity=0.351 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld--P~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
+++++|+.+|+++++.+|.++.++.++|.++. .+|++++|+++|++++... |....++..+|.+++. .+++++|+.
T Consensus 79 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~ 156 (234)
T TIGR02521 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGDFDKAEK 156 (234)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCCHHHHHH
Confidence 46677777777777777777777777766665 4666666666666666543 3344555556655544 356666666
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
+|+++++.+|++
T Consensus 157 ~~~~~~~~~~~~ 168 (234)
T TIGR02521 157 YLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHhCcCC
Confidence 666666666643
No 31
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.99 E-value=7.3e-09 Score=84.66 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------HcC
Q 027404 134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI------NHK 204 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~------~~g 204 (224)
+++++|+.+|++|+.+.|++ +.++.++|.++. ..|++++|+++|++|+.++|.+...+.++|.++.. ..|
T Consensus 49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 68999999999999997764 468999999887 69999999999999999999999999999988762 235
Q ss_pred ChH-------HHHHHHHHHHHhCCCC
Q 027404 205 DAP-------RAKSYFDRAVHSAPDD 223 (224)
Q Consensus 205 d~e-------eA~~~ferAL~l~P~d 223 (224)
+++ +|+.+|++++..+|++
T Consensus 128 ~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 128 DSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 555 6677777788888854
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.97 E-value=5.3e-09 Score=103.38 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
|+.+|++|++++|+++.++.++|.++. .+|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+..|+++++
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 444444444444444444444444443 34444444444444444444444444444444433 3444555555544444
Q ss_pred hCCC
Q 027404 219 SAPD 222 (224)
Q Consensus 219 l~P~ 222 (224)
.+|+
T Consensus 347 ~~P~ 350 (656)
T PRK15174 347 EKGV 350 (656)
T ss_pred hCcc
Confidence 4443
No 33
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.97 E-value=4.7e-09 Score=104.75 Aligned_cols=88 Identities=8% Similarity=0.062 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+.+++|+.+++++++.+|++..++.+++.++. +++++++|+..+++++..+|+++.++..+|.++.+ .|++++|+++|
T Consensus 100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~~y 177 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADACF 177 (694)
T ss_pred CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHHHH
Confidence 67788888888888888888888888888887 57888888888888888888888888888877654 46788888888
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+++++.+|++
T Consensus 178 ~~~~~~~p~~ 187 (694)
T PRK15179 178 ERLSRQHPEF 187 (694)
T ss_pred HHHHhcCCCc
Confidence 8888877753
No 34
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.96 E-value=1.4e-09 Score=75.34 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG 189 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da 189 (224)
.+++++|+.+|+++++.+|+++.+++.+|.++. .+|++++|+.+|+++++++|+++
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 368999999999999999999999999999998 69999999999999999999986
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=1.2e-08 Score=91.43 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.+++++|+..|++||+++|+++.++.++|.+++ ..|++++|+++|+++++++|+++.....+ .+....+++++|+..
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~~~~~~--~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPYRALWL--YLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHccCCHHHHHHH
Confidence 379999999999999999999999999999987 69999999999999999999998532222 223345789999999
Q ss_pred HHHHHHh-CCCC
Q 027404 213 FDRAVHS-APDD 223 (224)
Q Consensus 213 ferAL~l-~P~d 223 (224)
|++++.. +|+.
T Consensus 188 l~~~~~~~~~~~ 199 (296)
T PRK11189 188 LKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHhhCCccc
Confidence 9877654 4443
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.94 E-value=1.8e-09 Score=94.72 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
|+.++|+.+|++||+.+|+|+.++..+++++. ..|++++|.+.+++..+..|.++..+..+|.++..+ |++++|+.+|
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~ 237 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYL 237 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-cccccccccc
Confidence 45666666666666666666666666666554 356666666666665555556656656666655543 6889999999
Q ss_pred HHHHHhCCCCC
Q 027404 214 DRAVHSAPDDW 224 (224)
Q Consensus 214 erAL~l~P~d~ 224 (224)
+++++.+|+|+
T Consensus 238 ~~~~~~~p~d~ 248 (280)
T PF13429_consen 238 EKALKLNPDDP 248 (280)
T ss_dssp HHHHHHSTT-H
T ss_pred ccccccccccc
Confidence 99999888763
No 37
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.93 E-value=9e-09 Score=101.76 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVK----AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~ee----Ae~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA 209 (224)
+++++|+..|+++++.+|+++.+++++|.++. ..|++++ |+.+|++|++++|+++.++..+|.++.. .|++++|
T Consensus 226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA 303 (656)
T PRK15174 226 GKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEKA 303 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 56677777777777777777777777776665 4666664 6777777777777777777777666544 4567777
Q ss_pred HHHHHHHHHhCCCC
Q 027404 210 KSYFDRAVHSAPDD 223 (224)
Q Consensus 210 ~~~ferAL~l~P~d 223 (224)
+.+|+++++++|++
T Consensus 304 ~~~l~~al~l~P~~ 317 (656)
T PRK15174 304 IPLLQQSLATHPDL 317 (656)
T ss_pred HHHHHHHHHhCCCC
Confidence 77777777776654
No 38
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.92 E-value=3.3e-09 Score=73.68 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ 197 (224)
.+++++|+.+|+++++.+|+++.+++.+|.++. .+|++++|++++++++..+|+++.++..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 368999999999999999999999999999998 6999999999999999999999888776654
No 39
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.92 E-value=2.9e-09 Score=74.35 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKP 186 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G-d~eeAe~~~erAL~ldP 186 (224)
.+++++|+.+|.+||+.+|+++.+++++|.++. .+| ++++|+++|++||+++|
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 378999999999999999999999999999987 688 79999999999999998
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=2e-09 Score=103.86 Aligned_cols=87 Identities=16% Similarity=0.059 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
++|++|+.+|+.||..+|+|...|+.||..+. .-.+.++|+..|.||+++.|++..++++||..+.. .|.|+||+.+|
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~ykEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHHHHHHHH
Confidence 67777777777777777777777777777665 45667777777777777777777777777766543 46777777777
Q ss_pred HHHHHhCCC
Q 027404 214 DRAVHSAPD 222 (224)
Q Consensus 214 erAL~l~P~ 222 (224)
=.||.+.+.
T Consensus 522 L~AL~mq~k 530 (579)
T KOG1125|consen 522 LEALSMQRK 530 (579)
T ss_pred HHHHHhhhc
Confidence 777776554
No 41
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=1.1e-08 Score=102.23 Aligned_cols=86 Identities=13% Similarity=-0.011 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+.+++|...++++++.+|+++.+++.+|.++. ..|++++|+++|+++++.+|+++.++..+|.++.. .|+.++|...|
T Consensus 134 ~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~~A~~~~ 211 (694)
T PRK15179 134 QGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALWRARDVL 211 (694)
T ss_pred ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 79999999999999999999999999999997 69999999999999999999999999999998765 68999999999
Q ss_pred HHHHHhCC
Q 027404 214 DRAVHSAP 221 (224)
Q Consensus 214 erAL~l~P 221 (224)
++|+++..
T Consensus 212 ~~a~~~~~ 219 (694)
T PRK15179 212 QAGLDAIG 219 (694)
T ss_pred HHHHHhhC
Confidence 99998754
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.87 E-value=2.2e-08 Score=104.39 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW------------ 200 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~------------ 200 (224)
.+++++|+.+|++|++++|+++.++.++|.++. .+|++++|+++|++|++++|++..++..++.++.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 478999999999999999999999999999987 6999999999999999999999988776665431
Q ss_pred -----------------------------HHcCChHHHHHHHHHHHHhCCCC
Q 027404 201 -----------------------------INHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 201 -----------------------------~~~gd~eeA~~~ferAL~l~P~d 223 (224)
...+++++|+++|++|++++|++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~ 494 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 12578999999999999999985
No 43
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.86 E-value=2.4e-08 Score=96.14 Aligned_cols=87 Identities=29% Similarity=0.374 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|+++++.+|+++.++.+++.++. ..|+ .+|+.+|++++.+.|+++.++..+|.+++. .|++++|+.+|
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~ 860 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRALPLL 860 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 56677777777777777777777777776665 4666 667777777777777777777777766654 46788888888
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+++++++|.+
T Consensus 861 ~~a~~~~~~~ 870 (899)
T TIGR02917 861 RKAVNIAPEA 870 (899)
T ss_pred HHHHhhCCCC
Confidence 8888877754
No 44
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=2.1e-08 Score=89.06 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++.+|+..+++|.+.+|+|+.+|..+|.+|. +.|+++.|..-|.+|+++.|+++.++.|+|..++ ..||++.|+.++
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~-L~gd~~~A~~ll 191 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLL-LRGDLEDAETLL 191 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHH-HcCCHHHHHHHH
Confidence 78999999999999999999999999999886 7999999999999999999999999999998765 578999999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
.+|...-+.|
T Consensus 192 l~a~l~~~ad 201 (257)
T COG5010 192 LPAYLSPAAD 201 (257)
T ss_pred HHHHhCCCCc
Confidence 9998776643
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.1e-08 Score=97.08 Aligned_cols=88 Identities=24% Similarity=0.210 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
.++++|+.+|++||++||....+|..+|.-+.+ +.+..+|++.|++||+++|.|..+|+.+|..+.. .+-+.=|+-||
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYf 421 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYF 421 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHH
Confidence 578889999999999999988888888887774 7888889999999999999888888888877644 45677788888
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
++|+++.|+|
T Consensus 422 qkA~~~kPnD 431 (559)
T KOG1155|consen 422 QKALELKPND 431 (559)
T ss_pred HHHHhcCCCc
Confidence 8888888876
No 46
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.84 E-value=2.2e-08 Score=85.07 Aligned_cols=88 Identities=22% Similarity=0.198 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--c-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEI--R-------GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH--- 203 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~--~-------Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~--- 203 (224)
|+.|.+.++.++..||.|++.+++.|.+|.+. . .-+++|+.-|+.||.++|+..++++++|+++..+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 68899999999999999999999999988752 1 22558999999999999999999999999876432
Q ss_pred -------CChHHHHHHHHHHHHhCCCC
Q 027404 204 -------KDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 204 -------gd~eeA~~~ferAL~l~P~d 223 (224)
..|++|..+|++|+.++|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34889999999999999986
No 47
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.83 E-value=1.5e-08 Score=96.30 Aligned_cols=69 Identities=14% Similarity=0.033 Sum_probs=58.4
Q ss_pred HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 149 AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 149 ~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a---l~~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
.+|+++++++|+|.+|+ .+|++++|+.+|++||+++|+++.+ |+++|.+|.. .|++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 57888999999998887 5899999999999999999988854 8888887765 47889999999999887
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.81 E-value=4.7e-08 Score=98.07 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|+++|+.+|+++.++..++.++. ..|++++|+.+++++++.+|+++. +..+|.++.. .+++++|+..|
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~l 139 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRAM 139 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHHH
Confidence 78899999999999999999999999998887 699999999999999999999999 8899987765 68899999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+++++++|++
T Consensus 140 ~~al~~~P~~ 149 (765)
T PRK10049 140 TQALPRAPQT 149 (765)
T ss_pred HHHHHhCCCC
Confidence 9999999986
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=4.6e-08 Score=83.07 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH----
Q 027404 133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWIN---- 202 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~---- 202 (224)
.+++++|+..|++++..+|.++ .+++.+|.++. .++++++|+..|+++++..|+++. +++.+|.++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence 3789999999999999999987 57899999887 699999999999999999998876 677888877653
Q ss_pred ---cCChHHHHHHHHHHHHhCCCC
Q 027404 203 ---HKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 203 ---~gd~eeA~~~ferAL~l~P~d 223 (224)
.+++++|+..|+++++.+|++
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCC
Confidence 157899999999999999975
No 50
>PRK11906 transcriptional regulator; Provisional
Probab=98.80 E-value=3.5e-08 Score=93.81 Aligned_cols=89 Identities=9% Similarity=0.051 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
...+..+|.++.++|+++||.|+.++..+|.++. ..++++.|...|+||+.++|+.+.+|+.+|.++.. .|+.++|++
T Consensus 316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~ 393 (458)
T PRK11906 316 LELAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARI 393 (458)
T ss_pred chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHH
Confidence 4467889999999999999999999999999887 58889999999999999999999999999977654 689999999
Q ss_pred HHHHHHHhCCC
Q 027404 212 YFDRAVHSAPD 222 (224)
Q Consensus 212 ~ferAL~l~P~ 222 (224)
.+++|++++|.
T Consensus 394 ~i~~alrLsP~ 404 (458)
T PRK11906 394 CIDKSLQLEPR 404 (458)
T ss_pred HHHHHhccCch
Confidence 99999999994
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.80 E-value=5.5e-08 Score=93.71 Aligned_cols=88 Identities=18% Similarity=0.285 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.++++++..+|.+..++..+|.+++. .|++++|+.+|
T Consensus 139 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~ 216 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIELALAAY 216 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 67888888888888888888888888888876 58888888888888888888888888888877654 57888888888
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
++++.++|++
T Consensus 217 ~~a~~~~p~~ 226 (899)
T TIGR02917 217 RKAIALRPNN 226 (899)
T ss_pred HHHHhhCCCC
Confidence 8888888865
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.79 E-value=6e-08 Score=97.32 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.+++++|+.+|+++++..|+++.++.++|.++. ..|++++|++.|++|++++|++..++..+|.++.. .+++++|+..
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~~~~A~~~ 449 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQEWRQMDVL 449 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCCHHHHHHH
Confidence 378999999999999999999999999999886 79999999999999999999999999999887655 5789999999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
++++++..|++
T Consensus 450 ~~~ll~~~Pd~ 460 (765)
T PRK10049 450 TDDVVAREPQD 460 (765)
T ss_pred HHHHHHhCCCC
Confidence 99999999987
No 53
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=4.5e-08 Score=68.83 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG 196 (224)
.+++++|..+++++++.+|+++.++..+|.++. .+|++++|.++|+++++..|++..+....+
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 367888888888888888888888888888877 588888888888888888888887765443
No 54
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.77 E-value=1.2e-07 Score=84.47 Aligned_cols=89 Identities=16% Similarity=0.257 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCh
Q 027404 133 GKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLSMYGDLIWINHKDA 206 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---da~al~~lG~ll~~~~gd~ 206 (224)
.+++++|+..|++.|+..|++ +.+++.+|.+++ ..|++++|+.+|++++...|+ .+++++.+|.++.. .+++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~ 233 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDT 233 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCH
Confidence 479999999999999999999 589999999998 699999999999999998887 47788888987765 6899
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027404 207 PRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 207 eeA~~~ferAL~l~P~d 223 (224)
++|+.+|+++++..|+.
T Consensus 234 ~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 99999999999999974
No 55
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=9.3e-08 Score=86.34 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
+++..|...|++|+++.|+|++++..||.+++...| +..+|...|++|+++||+|..+++.||..+++ .++|++|+.
T Consensus 170 ~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~~~~A~~ 248 (287)
T COG4235 170 GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGDYAEAAA 248 (287)
T ss_pred cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHH
Confidence 567777777777777777777777777777763222 34477777777777777777777777776655 467888888
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
.++..+++.|.+
T Consensus 249 ~Wq~lL~~lp~~ 260 (287)
T COG4235 249 AWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHhcCCCC
Confidence 888887777643
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.76 E-value=1.1e-07 Score=85.81 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCChHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~~gd~eeA~~ 211 (224)
.+++++|+.+|+++++.+|++..+++.+|.++. ..|++++|+++|++++..+|.+ ..++..++.++.. .+++++|+.
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~A~~ 270 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAEGLE 270 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHHHHH
Confidence 367888888888888888888888888887776 5788888888888888887766 3455566666654 467778888
Q ss_pred HHHHHHHhCCC
Q 027404 212 YFDRAVHSAPD 222 (224)
Q Consensus 212 ~ferAL~l~P~ 222 (224)
+|++++++.|+
T Consensus 271 ~l~~~~~~~p~ 281 (389)
T PRK11788 271 FLRRALEEYPG 281 (389)
T ss_pred HHHHHHHhCCC
Confidence 88777777775
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5e-08 Score=92.79 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
++...|++.|++||+++|.|-.+|+.+|.++. .++-+.=|+-||++|++..|+|...|..+|.++... ++.++|+.+|
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl-~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL-NRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 56789999999999999999999999999975 799999999999999999999999999999998664 6899999999
Q ss_pred HHHHHhCC
Q 027404 214 DRAVHSAP 221 (224)
Q Consensus 214 erAL~l~P 221 (224)
++|+...-
T Consensus 456 krai~~~d 463 (559)
T KOG1155|consen 456 KRAILLGD 463 (559)
T ss_pred HHHHhccc
Confidence 99998653
No 58
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.72 E-value=1e-07 Score=99.42 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.+++++|+.+|+++++.+|+++.++.+++.++. ..|++++|+++|+++++.+|+++.++..+|.++.. .|++++|+++
T Consensus 616 ~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~-~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~-~g~~~eA~~~ 693 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDI-AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA-LGDTAAAQRT 693 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh-CCCHHHHHHH
Confidence 379999999999999999999999999999987 69999999999999999999999999999987754 6899999999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
|++++...|++
T Consensus 694 ~~~al~~~~~~ 704 (1157)
T PRK11447 694 FNRLIPQAKSQ 704 (1157)
T ss_pred HHHHhhhCccC
Confidence 99999987653
No 59
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=7.1e-08 Score=93.28 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP--~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
..+..-.++|..|...+| .|+++...||.+++ ..|+|++|+.||+.||..+|+|...|+.||..+. ...+.++|+.
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIs 485 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAIS 485 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHH
Confidence 356677889999999999 89999999998887 6999999999999999999999999999998774 4678999999
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
.|.||+++.|++
T Consensus 486 AY~rALqLqP~y 497 (579)
T KOG1125|consen 486 AYNRALQLQPGY 497 (579)
T ss_pred HHHHHHhcCCCe
Confidence 999999999986
No 60
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.68 E-value=9.1e-08 Score=67.25 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=54.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 162 KFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 162 ~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
.++. .++++++|++++++++.++|+++.++..+|.+++. .|++++|+..|++++++.|++
T Consensus 3 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCc
Confidence 3454 58999999999999999999999999999998876 578999999999999999976
No 61
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.68 E-value=1.1e-07 Score=79.08 Aligned_cols=76 Identities=16% Similarity=0.023 Sum_probs=68.6
Q ss_pred HHHC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 027404 147 IKAY-PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW 224 (224)
Q Consensus 147 Le~d-P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d~ 224 (224)
..++ ++.-+.++.||..++ ..|++++|+..|+.++.+||.++..|++||.++. ..|++++|+..|.+|+.++|+|+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCc
Confidence 3456 777889999999988 5999999999999999999999999999998864 56899999999999999999974
No 62
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.66 E-value=2.4e-07 Score=83.59 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee 208 (224)
+++++|+.+|+++++.+|.+. .++.++|.++. .+|++++|+.+|+++++.+|++..++..+|.++.. .|++++
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~ 232 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA-QGDYAA 232 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCHHH
Confidence 677888888888888777653 24556776665 57888888888888888888888888888877654 577888
Q ss_pred HHHHHHHHHHhCCC
Q 027404 209 AKSYFDRAVHSAPD 222 (224)
Q Consensus 209 A~~~ferAL~l~P~ 222 (224)
|+.+|++++..+|.
T Consensus 233 A~~~~~~~~~~~p~ 246 (389)
T PRK11788 233 AIEALERVEEQDPE 246 (389)
T ss_pred HHHHHHHHHHHChh
Confidence 88888888887775
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=1.9e-07 Score=83.40 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCChHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGDLIWINHKDAPR 208 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~----al~~lG~ll~~~~gd~ee 208 (224)
.|++++|+..|+++++++|+++.++..+|.+++ ..|++++|+++|++++...|.++. .+..++.++.. .|++++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G~~~~ 204 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RGDYEA 204 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CCCHHH
Confidence 478999999999999999999999999999998 599999999999999999875433 34567877654 689999
Q ss_pred HHHHHHHHHHhCC
Q 027404 209 AKSYFDRAVHSAP 221 (224)
Q Consensus 209 A~~~ferAL~l~P 221 (224)
|+.+|++++...|
T Consensus 205 A~~~~~~~~~~~~ 217 (355)
T cd05804 205 ALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHhcccc
Confidence 9999999987766
No 64
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.5e-07 Score=90.36 Aligned_cols=88 Identities=22% Similarity=0.219 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
++|..|+.+|.+||..+|+|+.++.|-|.++. ..+.+..|++.++++|+++|+...+|..-|.++..+ ++|++|.+.|
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m-k~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM-KEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 79999999999999999999999999998776 799999999999999999999999999999888765 5799999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+.++.++|++
T Consensus 450 ~eale~dp~~ 459 (539)
T KOG0548|consen 450 QEALELDPSN 459 (539)
T ss_pred HHHHhcCchh
Confidence 9999999974
No 65
>PRK15331 chaperone protein SicA; Provisional
Probab=98.63 E-value=2.3e-07 Score=77.76 Aligned_cols=87 Identities=11% Similarity=0.121 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.|++++|+..|+-....||.|+..|..||.++. .++++++|+.+|-.|..++++|+...+..|.+++.+ ++.+.|...
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l-~~~~~A~~~ 127 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM-RKAAKARQC 127 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh-CCHHHHHHH
Confidence 379999999999999999999999999998875 799999999999999999999999999999998765 689999999
Q ss_pred HHHHHHhCCC
Q 027404 213 FDRAVHSAPD 222 (224)
Q Consensus 213 ferAL~l~P~ 222 (224)
|+.++. .|.
T Consensus 128 f~~a~~-~~~ 136 (165)
T PRK15331 128 FELVNE-RTE 136 (165)
T ss_pred HHHHHh-Ccc
Confidence 999987 443
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.3e-07 Score=90.43 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|..-|++|++++|.++..+..++.++| +++++++++..|+.+++.=|+.++++..+|.++.++ ++|++|+++|
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y-r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq-qqFd~A~k~Y 485 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALY-RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ-QQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH-HhHHHHHHHH
Confidence 68889999999999999999999999988888 688999999999999999999999999999988875 6899999999
Q ss_pred HHHHHhCCC
Q 027404 214 DRAVHSAPD 222 (224)
Q Consensus 214 erAL~l~P~ 222 (224)
++|+.+.|.
T Consensus 486 D~ai~LE~~ 494 (606)
T KOG0547|consen 486 DKAIELEPR 494 (606)
T ss_pred HHHHhhccc
Confidence 999999986
No 67
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=5.1e-07 Score=82.63 Aligned_cols=87 Identities=8% Similarity=0.032 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDF--VKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~--eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
++++|+.++.++|+.+|.+..+|+..+.++. ..++. ++++.+++++|+++|.+..+|.+.+.++.. .+++++|+++
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHH
Confidence 4677777777777777777777777776664 45553 567777777777777777777777766544 3567778888
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
++++|+++|.+
T Consensus 165 ~~~~I~~d~~N 175 (320)
T PLN02789 165 CHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHCCCc
Confidence 88888777765
No 68
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5.5e-07 Score=81.37 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--ChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK--DAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g--d~eeA~~ 211 (224)
.+.+.-+.-++.-|+.||+|++-|..+|.++. .+|++..|+..|.+|+++.|++++++..||.+++...+ +-.+|..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 45888899999999999999999999999997 79999999999999999999999999999998876543 4679999
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
.|++|++++|+|
T Consensus 215 ll~~al~~D~~~ 226 (287)
T COG4235 215 LLRQALALDPAN 226 (287)
T ss_pred HHHHHHhcCCcc
Confidence 999999999987
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=4.8e-07 Score=76.85 Aligned_cols=89 Identities=12% Similarity=-0.003 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH---------
Q 027404 133 GKESESMDVYYQEMIKAYPEDAL---VLANYAKFLKEIR--------GDFVKAEEYCGRAILAKPGDGNVL--------- 192 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~---~l~nlA~~l~e~~--------Gd~eeAe~~~erAL~ldP~da~al--------- 192 (224)
.+++++|+..|+++++.+|+++. +++.+|.++.. . +++++|+++|++++..+|++..++
T Consensus 83 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~ 161 (235)
T TIGR03302 83 SGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL 161 (235)
T ss_pred cCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence 36999999999999999999886 68888988763 3 789999999999999999987553
Q ss_pred --------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 193 --------SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 193 --------~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
..+|.+++. .|++++|+..|+++++..|++
T Consensus 162 ~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 162 RNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCC
Confidence 234555544 589999999999999998864
No 70
>PRK11906 transcriptional regulator; Provisional
Probab=98.59 E-value=3.3e-07 Score=87.25 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMI---KAYPEDALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202 (224)
Q Consensus 134 ~d~e~A~~~yerAL---e~dP~na~~l~nlA~~l~e~--------~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~ 202 (224)
...++|..+|.+|+ ++||+++.++..+|.++... ..+..+|.+..++|++++|+|+.++..+|.+++..
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 46678999999999 99999999999998876542 23455899999999999999999999999988875
Q ss_pred cCChHHHHHHHHHHHHhCCCC
Q 027404 203 HKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 203 ~gd~eeA~~~ferAL~l~P~d 223 (224)
++++.|+.+|++|+.++|+.
T Consensus 352 -~~~~~a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 352 -GQAKVSHILFEQAKIHSTDI 371 (458)
T ss_pred -cchhhHHHHHHHHhhcCCcc
Confidence 56999999999999999985
No 71
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.58 E-value=4.7e-07 Score=87.79 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~--dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
.++..|....++++.+ +|.++.++..+|..+. ..|++++|+.+|+||++++| ++.+|..+|.++.. .|++++|++
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~ 474 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAAD 474 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHH
Confidence 3466778888887775 8888999999987765 68999999999999999999 58899999988754 689999999
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
.|++|++++|.+
T Consensus 475 ~~~~A~~L~P~~ 486 (517)
T PRK10153 475 AYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHhcCCCC
Confidence 999999999975
No 72
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=6.5e-07 Score=81.94 Aligned_cols=88 Identities=10% Similarity=0.100 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CC----hHHH
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH--KD----APRA 209 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~--gd----~eeA 209 (224)
.+++..++.+||+.||.|..+|...+.++. ..+++++|++++.++|+.||.+..+|...+.++.... +. .+++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~-~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLR-TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 467899999999999999999999999987 6899999999999999999999999999987765430 12 3578
Q ss_pred HHHHHHHHHhCCCCC
Q 027404 210 KSYFDRAVHSAPDDW 224 (224)
Q Consensus 210 ~~~ferAL~l~P~d~ 224 (224)
++|..++|.++|+|.
T Consensus 203 l~y~~~aI~~~P~N~ 217 (320)
T PLN02789 203 LKYTIDAILANPRNE 217 (320)
T ss_pred HHHHHHHHHhCCCCc
Confidence 999999999999873
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.6e-07 Score=87.74 Aligned_cols=88 Identities=19% Similarity=0.368 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHH-----------------------------------------HHHHHcCCHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAK-----------------------------------------FLKEIRGDFV 172 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~-----------------------------------------~l~e~~Gd~e 172 (224)
++++.|..+|.+|+.+.|.||.+++.+|. ++. ..+.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhhHH
Confidence 67788888888888888888766554444 333 457778
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 173 KAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 173 eAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+|+.+|++||.+.|.++.++..+|.++.. .|+++.|+++|.+||.++|++
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCcc
Confidence 88888888888888888888888876644 577888888888888888876
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.55 E-value=1.4e-07 Score=65.38 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=51.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
..|++++|+++|++++..+|++..++..++.+++. .|++++|..++++++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCH
Confidence 47999999999999999999999999999999876 589999999999999999974
No 75
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.52 E-value=9.1e-07 Score=82.42 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA--LVLANYAKFLKEIRGDFVKAEEYCG--RAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na--~~l~nlA~~l~e~~Gd~eeAe~~~e--rAL~ldP~da~al~~lG~ll~~~~gd~eeA 209 (224)
++.+.+.+.++++++.+|+|+ .++..||++++ .+|++++|.+||+ ++++.+|++.. +..+|.+++. .|+.++|
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~-~g~~~~A 389 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM-KHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQ-AGDKAEA 389 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH-cCCHHHH
Confidence 567899999999999999999 88999999997 6999999999999 68888897766 4478998877 4789999
Q ss_pred HHHHHHHHHh
Q 027404 210 KSYFDRAVHS 219 (224)
Q Consensus 210 ~~~ferAL~l 219 (224)
.++|++++.+
T Consensus 390 ~~~~~~~l~~ 399 (409)
T TIGR00540 390 AAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.52 E-value=8.5e-07 Score=89.34 Aligned_cols=89 Identities=22% Similarity=0.350 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
|++++|+..+..+|+++|.++.+|+.+|.++. .+||.++|..+...|--++|++.+.|..++....+ .+.+.+|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHH
Confidence 79999999999999999999999999999875 69999999999999999999999999999886544 57899999999
Q ss_pred HHHHHhCCCCC
Q 027404 214 DRAVHSAPDDW 224 (224)
Q Consensus 214 erAL~l~P~d~ 224 (224)
.+||+++|.+|
T Consensus 231 ~rAI~~~p~n~ 241 (895)
T KOG2076|consen 231 SRAIQANPSNW 241 (895)
T ss_pred HHHHhcCCcch
Confidence 99999999886
No 77
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.52 E-value=5.9e-07 Score=78.75 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAY--PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~d--P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
++++++...++++.+.. |.++.+|..+|.++. ..|+.++|+++|++|++++|++..++..++.++.. .+++++|.+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~ 201 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEARE 201 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHH
Confidence 78999999999988765 778899999999886 69999999999999999999999999998887765 577888888
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
.++...+..|.+
T Consensus 202 ~l~~~~~~~~~~ 213 (280)
T PF13429_consen 202 ALKRLLKAAPDD 213 (280)
T ss_dssp HHHHHHHH-HTS
T ss_pred HHHHHHHHCcCH
Confidence 888777765543
No 78
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.51 E-value=2.2e-06 Score=68.19 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 027404 131 DSGKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLSMYGDLIWINHK 204 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---da~al~~lG~ll~~~~g 204 (224)
|..|+.++|+.+|++|++..+.. ..++..+|..+. ..|++++|+..+++++...|+ +..+...++.+++. .|
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g 89 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG 89 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC
Confidence 55689999999999999986665 468889999987 699999999999999999898 77777788887766 57
Q ss_pred ChHHHHHHHHHHHH
Q 027404 205 DAPRAKSYFDRAVH 218 (224)
Q Consensus 205 d~eeA~~~ferAL~ 218 (224)
+.++|+.++-.++.
T Consensus 90 r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 RPKEALEWLLEALA 103 (120)
T ss_pred CHHHHHHHHHHHHH
Confidence 89999999887765
No 79
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.51 E-value=1.5e-07 Score=67.15 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 027404 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA----KPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 151 P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l----dP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~ 220 (224)
|+-+.++.++|.++. .+|++++|+.+|++|+++ .+++ +.++.++|.++.. .|++++|+.+|++|+++.
T Consensus 2 ~~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 334578999999988 699999999999999965 2222 4567889988765 689999999999999863
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.3e-07 Score=87.80 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=71.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027404 132 SGKESESMDVYYQEMIKAYPE------DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD 205 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd 205 (224)
.+++|+.|++.|.+||++.|. ++..+.+-|.++.++.+|+..|+..+++||++||....++..||.+..+ +++
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ-~~~ 552 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ-RGK 552 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-Hhh
Confidence 346888888888888888888 7777777777766677888888888888888888888888888887765 467
Q ss_pred hHHHHHHHHHHHHhC
Q 027404 206 APRAKSYFDRAVHSA 220 (224)
Q Consensus 206 ~eeA~~~ferAL~l~ 220 (224)
.++|+++|++++.+.
T Consensus 553 i~eAielFEksa~lA 567 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887653
No 81
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.49 E-value=9.5e-07 Score=60.11 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+++++|.++. .+|++++|+.+|+++++..|.+..++..+|.++... +++++|+.+|++++++.|.+
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcc
Confidence 5788888887 599999999999999999999999999999888764 68999999999999998875
No 82
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.44 E-value=2e-06 Score=80.10 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
++.+++.+.+++.++.+|+|+..+..+|.++. ..+++++|+++|+++++.+|++.. +..++.++.. .|+.++|..+|
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~-~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~-~g~~~~A~~~~ 384 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM-KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDR-LHKPEEAAAMR 384 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH-cCCHHHHHHHH
Confidence 78899999999999999999999999999988 699999999999999999998766 3358887765 68899999999
Q ss_pred HHHHHhC
Q 027404 214 DRAVHSA 220 (224)
Q Consensus 214 erAL~l~ 220 (224)
++++.+.
T Consensus 385 ~~~l~~~ 391 (398)
T PRK10747 385 RDGLMLT 391 (398)
T ss_pred HHHHhhh
Confidence 9998764
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.44 E-value=1.3e-06 Score=78.07 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+....+...++.....+|....++..+|.++. .+|++++|++.|+++++++|+++.++..+|.+++. .|++++|+.++
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l 171 (355)
T cd05804 94 GMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFM 171 (355)
T ss_pred cCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 44455555555555666777777778887776 69999999999999999999999999999998876 57899999999
Q ss_pred HHHHHhCCC
Q 027404 214 DRAVHSAPD 222 (224)
Q Consensus 214 erAL~l~P~ 222 (224)
++++...|.
T Consensus 172 ~~~l~~~~~ 180 (355)
T cd05804 172 ESWRDTWDC 180 (355)
T ss_pred HhhhhccCC
Confidence 999998763
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=1.3e-06 Score=77.69 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
++-+.+..+..+++..+|.+.+++..+|..+. ..|++..|+..+++|..++|+|..+|..+|.+|. +.|++++|...|
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay 157 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAY 157 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHH
Confidence 45567778889999999999999999999887 7999999999999999999999999999998775 568999999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
.+|+++.|++
T Consensus 158 ~qAl~L~~~~ 167 (257)
T COG5010 158 RQALELAPNE 167 (257)
T ss_pred HHHHHhccCC
Confidence 9999999975
No 85
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.9e-06 Score=80.65 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHCC----CC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYP----ED-----------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL 198 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP----~n-----------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l 198 (224)
++|..|...|++|+..=. .+ -.++.|+|.++. ..++|.+|++++.++|.++|+|+.+++.-|.+
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A 300 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQA 300 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 789999999999987633 11 156789998776 79999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 199 IWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 199 l~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+.. .++|+.|+..|++|++++|+|
T Consensus 301 ~l~-~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 301 LLA-LGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHh-hccHHHHHHHHHHHHHhCCCc
Confidence 876 478999999999999999986
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.41 E-value=1.9e-06 Score=70.39 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHH
Q 027404 135 ESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~n--a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA 209 (224)
.+..+...+...++.++.+ +.+++++|.++. .+|++++|+.+|++|+.+.|++ +.++.++|.++.. .+++++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA 91 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKA 91 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHH
Confidence 3566667776666777777 577799998876 6999999999999999997764 4588999988765 6899999
Q ss_pred HHHHHHHHHhCCCC
Q 027404 210 KSYFDRAVHSAPDD 223 (224)
Q Consensus 210 ~~~ferAL~l~P~d 223 (224)
+.+|++|++++|.+
T Consensus 92 ~~~~~~Al~~~~~~ 105 (168)
T CHL00033 92 LEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHhCcCc
Confidence 99999999998864
No 87
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.40 E-value=2e-06 Score=79.36 Aligned_cols=67 Identities=10% Similarity=-0.011 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~ 201 (224)
+++++|+.+|++||+++|+++.+++++|.+++ ..|++++|+.+|++|++++|+++.+...++.+...
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999987 69999999999999999999999998888766433
No 88
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=2.8e-06 Score=75.90 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--ChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK--DAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g--d~eeA~~ 211 (224)
|..-+|++..-.-++..++|+++|..++.++. ..|+|++|.-||+..+-++|.++..+..||.+++-.+| +++-|..
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44457888888888888899999999999887 68999999999999999999999998899988876654 4778999
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
||.+|++++|.+
T Consensus 213 yy~~alkl~~~~ 224 (289)
T KOG3060|consen 213 YYERALKLNPKN 224 (289)
T ss_pred HHHHHHHhChHh
Confidence 999999999854
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.37 E-value=2.2e-06 Score=85.38 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEE--YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~--~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
++.+++|.+.|..|+.+||+++.....+|.++. ..|+..-|+. .+.-|+++||.++.+|+.+|.++. ..||.++|.
T Consensus 697 ~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k-~~Gd~~~Aa 774 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK-KLGDSKQAA 774 (799)
T ss_pred HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HccchHHHH
Confidence 378999999999999999999999999999987 5898877777 999999999999999999998875 578999999
Q ss_pred HHHHHHHHhCCCC
Q 027404 211 SYFDRAVHSAPDD 223 (224)
Q Consensus 211 ~~ferAL~l~P~d 223 (224)
++|..|+++++.+
T Consensus 775 ecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 775 ECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHhhccCC
Confidence 9999999998764
No 90
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.37 E-value=4.2e-06 Score=68.76 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=64.7
Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404 142 YYQEMIKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRA 216 (224)
Q Consensus 142 ~yerALe~dP--~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferA 216 (224)
.+.+.+..++ ..+.+++++|.++. ..|++++|+.+|++|+.+.|+. +.++..+|.++.. .|++++|+.+|++|
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 98 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQA 98 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 3444444443 45678899998886 6999999999999999988764 4688899988765 68999999999999
Q ss_pred HHhCCCC
Q 027404 217 VHSAPDD 223 (224)
Q Consensus 217 L~l~P~d 223 (224)
+++.|++
T Consensus 99 l~~~p~~ 105 (172)
T PRK02603 99 LELNPKQ 105 (172)
T ss_pred HHhCccc
Confidence 9999875
No 91
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.36 E-value=3e-06 Score=86.32 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
|+++.|+..|+++++.+|+++.+...++.++. ..|+.++|+.++++++...|.....+..+|.++. ..+++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 56677777777777777777533335555554 4566666666666666333333333333344443 345666666666
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+++++.+|++
T Consensus 126 ~kaL~~dP~n 135 (822)
T PRK14574 126 QSSLKKDPTN 135 (822)
T ss_pred HHHHhhCCCC
Confidence 6666666654
No 92
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.36 E-value=4.2e-07 Score=56.73 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=25.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027404 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAE 175 (224)
Q Consensus 142 ~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe 175 (224)
+|++||+++|+|+.+|++||.++. ..|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence 377888888888888888888776 578888776
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=4.1e-06 Score=67.12 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404 133 GKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA 209 (224)
.+++++|...|++++...|++ +.+...+|.++. .+|++++|+..++. +.-.+..+.++...|.++.. .|++++|
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~~A 137 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYDEA 137 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHHHH
Confidence 378899999999999887766 357778888887 58999999998866 44455566777788888765 5789999
Q ss_pred HHHHHHHH
Q 027404 210 KSYFDRAV 217 (224)
Q Consensus 210 ~~~ferAL 217 (224)
+..|++||
T Consensus 138 ~~~y~~Al 145 (145)
T PF09976_consen 138 RAAYQKAL 145 (145)
T ss_pred HHHHHHhC
Confidence 99998875
No 94
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=4.8e-06 Score=62.18 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+.+++..|..+. .+|++++|+.+|++++..+|++ +.++..+|.+++. .+++++|+.+|++++...|++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCC
Confidence 467888898887 6999999999999999999987 5688889988766 578999999999999998874
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=5.1e-06 Score=79.35 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+.+++|+..++..|...|+|+.++-..+.++. ..++..+|++.+++|+.++|+.+.++.+||..|+. .|++++|+.++
T Consensus 320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~L 397 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRIL 397 (484)
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHHH
Confidence 56677777777777777877777777777776 47777788888888888888777777777777655 46777888887
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
.+.+.-+|+|
T Consensus 398 ~~~~~~~p~d 407 (484)
T COG4783 398 NRYLFNDPED 407 (484)
T ss_pred HHHhhcCCCC
Confidence 7777777765
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.1e-06 Score=82.72 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
..++++.|+.+|-.||.++|.|...+.|-..++. ..|+|++|++--.++++++|+=+..|...|..++- .|+|++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHHHH
Confidence 4479999999999999999999999999877765 79999999999999999999999999999988765 579999999
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
.|...|+++|++
T Consensus 92 ay~~GL~~d~~n 103 (539)
T KOG0548|consen 92 AYSEGLEKDPSN 103 (539)
T ss_pred HHHHHhhcCCch
Confidence 999999999975
No 97
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.31 E-value=1.5e-06 Score=56.61 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (224)
Q Consensus 154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ 197 (224)
|.+++.+|.++. ..|++++|+++|+++|+.+|+|+.+|..||.
T Consensus 1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468899999987 6999999999999999999999999998874
No 98
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.28 E-value=4.9e-06 Score=80.73 Aligned_cols=89 Identities=9% Similarity=-0.014 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHc
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR-------GDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINH 203 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~-------Gd~eeAe~~~erAL~l--dP~da~al~~lG~ll~~~~ 203 (224)
.+++.+|+.+|++||++||+++.++..++.++.... .+..+|.+.+++++.+ +|.++.++..+|.+.. ..
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~ 433 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL-VK 433 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hc
Confidence 356889999999999999999999998887654221 2345777788887774 7888888888876654 46
Q ss_pred CChHHHHHHHHHHHHhCCC
Q 027404 204 KDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 204 gd~eeA~~~ferAL~l~P~ 222 (224)
+++++|..+|++|++++|+
T Consensus 434 g~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEMS 452 (517)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 8999999999999999994
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=1.1e-05 Score=77.11 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN----------- 202 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~----------- 202 (224)
++.++|++.|++|+.++|+.+.++.+||.++. ..|++++|+.++++.+..+|+|+..|..++..+-.+
T Consensus 354 nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 354 NKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 78999999999999999999999999999998 699999999999999999999999999999876442
Q ss_pred -----cCChHHHHHHHHHHHHh
Q 027404 203 -----HKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 203 -----~gd~eeA~~~ferAL~l 219 (224)
.|++++|+..+.+|.+.
T Consensus 433 E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 433 EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh
Confidence 35566666666666554
No 100
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=3.1e-06 Score=76.79 Aligned_cols=65 Identities=14% Similarity=0.034 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll 199 (224)
+.++.|++-++.||++||.+..+|..+|.+++ .+|++++|++.|+|||+++|++..+..+|..+-
T Consensus 129 g~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 129 GEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred cchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 78999999999999999999999999999988 699999999999999999999998888887553
No 101
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.18 E-value=3.7e-06 Score=78.24 Aligned_cols=89 Identities=20% Similarity=0.125 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
++.|++|+.||-++|.++|.|+..+.|-|.+|. ++..+..|+.-+..||.+|..+..+|...+.+-..+ |...||..-
T Consensus 110 QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L-g~~~EAKkD 187 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL-GNNMEAKKD 187 (536)
T ss_pred ccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH-hhHHHHHHh
Confidence 368899999999999999999999999998887 789999999999999999999999999888776654 578999999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
++.+|++.|+.
T Consensus 188 ~E~vL~LEP~~ 198 (536)
T KOG4648|consen 188 CETVLALEPKN 198 (536)
T ss_pred HHHHHhhCccc
Confidence 99999999974
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=8.8e-06 Score=80.89 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=81.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
+.++|++|..+++.+++++|-....|+++|.+.. ..++++.|.++|.+++.++|+++.+|++++..+... ++-.+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~-~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL-KKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH-hhhHHHHH
Confidence 3579999999999999999999999999998887 589999999999999999999999999999988764 56789999
Q ss_pred HHHHHHHhCCCCC
Q 027404 212 YFDRAVHSAPDDW 224 (224)
Q Consensus 212 ~ferAL~l~P~d~ 224 (224)
.+++|++-+-.+|
T Consensus 575 ~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 575 KLKEALKCNYQHW 587 (777)
T ss_pred HHHHHhhcCCCCC
Confidence 9999998764443
No 103
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.13 E-value=3.1e-05 Score=72.14 Aligned_cols=87 Identities=8% Similarity=0.023 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLA-NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~-nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
.++++.|..+|++|.+.+|++..+.. ..+.++. .+|++++|+++++++++.+|+++.++..++.++.. .|++++|++
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gdw~~a~~ 208 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGAWSSLLD 208 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhHHHHHH
Confidence 37889999999999999999865443 3366665 68999999999999999999999999988887765 478999998
Q ss_pred HHHHHHHhCC
Q 027404 212 YFDRAVHSAP 221 (224)
Q Consensus 212 ~ferAL~l~P 221 (224)
.+.+..+..+
T Consensus 209 ~l~~l~k~~~ 218 (398)
T PRK10747 209 ILPSMAKAHV 218 (398)
T ss_pred HHHHHHHcCC
Confidence 8888876544
No 104
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.13 E-value=8.2e-06 Score=77.82 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 134 KESESMDVYYQEMIKAYPEDALV---LANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~---l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
+++++|+.+|++||+++|+++++ |+|+|.+|. .+|++++|+++|++||++
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALel 141 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 79999999999999999999965 999999887 699999999999999998
No 105
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=2.7e-05 Score=73.48 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+.++.|+..|++..+.+|. +...+|.++. ..++-.+|++.+.++|..+|.++..+...+.++.. .++++.|+...
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 3455555555555555443 3333444443 24444455555555555555555555544444433 34455555555
Q ss_pred HHHHHhCCC
Q 027404 214 DRAVHSAPD 222 (224)
Q Consensus 214 erAL~l~P~ 222 (224)
++|+.+.|+
T Consensus 258 k~av~lsP~ 266 (395)
T PF09295_consen 258 KKAVELSPS 266 (395)
T ss_pred HHHHHhCch
Confidence 555555554
No 106
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.10 E-value=5.4e-05 Score=66.60 Aligned_cols=89 Identities=20% Similarity=0.148 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc----
Q 027404 134 KESESMDVYYQEMIKAYPEDALVL---ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINH---- 203 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l---~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~~---- 203 (224)
+++++|+..|++++...|..+.+. +.+|.+++ ..+++++|+.+|++.|+..|+++. +++.+|.+.....
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~ 124 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL 124 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence 799999999999999999998554 88999988 699999999999999999998755 5666665432111
Q ss_pred ----------CC---hHHHHHHHHHHHHhCCCC
Q 027404 204 ----------KD---APRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 204 ----------gd---~eeA~~~ferAL~l~P~d 223 (224)
.| ..+|+..|++.++.-|+.
T Consensus 125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred hhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 12 357889999999998863
No 107
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.10 E-value=3.1e-05 Score=79.03 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
..+++.+|++.+++.+...|.|+.++..+|.++. .+|++.+|++.+++++.++|++..+...++.+...+ +++++|..
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~-~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l-~e~~~A~~ 505 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL-ARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL-QEWHQMEL 505 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh-hhHHHHHH
Confidence 3479999999999999999999999999999987 799999999999999999999999999999887765 78999999
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
..+..++..|++
T Consensus 506 ~~~~l~~~~Pe~ 517 (822)
T PRK14574 506 LTDDVISRSPED 517 (822)
T ss_pred HHHHHHhhCCCc
Confidence 999999999987
No 108
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.10 E-value=4.5e-05 Score=71.08 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
+++++|..+|+++.+..|++. .+...++.++. ..|++++|.+.++++++.+|+++.++..++.++.. .+++++|++.
T Consensus 132 g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-~~d~~~a~~~ 209 (409)
T TIGR00540 132 GDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR-SGAWQALDDI 209 (409)
T ss_pred CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 566777777777777666664 35555566655 46777777777777777777777776666666544 3567777777
Q ss_pred HHHHHHh
Q 027404 213 FDRAVHS 219 (224)
Q Consensus 213 ferAL~l 219 (224)
+++.++.
T Consensus 210 l~~l~k~ 216 (409)
T TIGR00540 210 IDNMAKA 216 (409)
T ss_pred HHHHHHc
Confidence 7666654
No 109
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.6e-05 Score=70.65 Aligned_cols=87 Identities=20% Similarity=0.109 Sum_probs=78.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
+....|..|+.+|-+||.++|..+..+.|-|..+. ...+++.+++-.++|++++||-+.+++.+|.++.... .|++|+
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~-~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-GYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-cccHHH
Confidence 34468899999999999999999999999998877 5899999999999999999999999999999887654 599999
Q ss_pred HHHHHHHHh
Q 027404 211 SYFDRAVHS 219 (224)
Q Consensus 211 ~~ferAL~l 219 (224)
..+.+|..+
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 999999654
No 110
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.08 E-value=1.4e-05 Score=77.54 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGD 197 (224)
Q Consensus 134 ~d~e~A~~~yerALe~--------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--------dP~da~al~~lG~ 197 (224)
++++.|+..|++|++. .|.=+..+.++|.++. .++++.+|+..|++|+.+ +|.-+.++.+|+.
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 8999999999999999 6666667777998887 799999999999999975 4555667889998
Q ss_pred HHHHHcCChHHHHHHHHHHHHh
Q 027404 198 LIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 198 ll~~~~gd~eeA~~~ferAL~l 219 (224)
+|.. .|+|++|..++++|+++
T Consensus 292 ly~~-~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 292 LYYK-QGKFAEAEEYCERALEI 312 (508)
T ss_pred HHhc-cCChHHHHHHHHHHHHH
Confidence 8765 68999999999999986
No 111
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=1.3e-05 Score=76.92 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
|++++|...|+.||..|....++++|+|..+. .+|++++|+.||-+.-.+--++++++..++.+|- ...+...|+++|
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence 69999999999999999999999999998775 7999999999999988888899999999998775 457899999999
Q ss_pred HHHHHhCCCCC
Q 027404 214 DRAVHSAPDDW 224 (224)
Q Consensus 214 erAL~l~P~d~ 224 (224)
-++..+-|+|.
T Consensus 582 ~q~~slip~dp 592 (840)
T KOG2003|consen 582 MQANSLIPNDP 592 (840)
T ss_pred HHhcccCCCCH
Confidence 99999999873
No 112
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.06 E-value=4.2e-06 Score=52.19 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 177 YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 177 ~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
+|+|||+++|+++.+|.+||.++.. .|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence 5899999999999999999998765 689999863
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=2.6e-05 Score=80.03 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe 214 (224)
++ .+.++|-+.|...+.+-.+++.+|.+|. .+|+.++|.+.|+++|+++|+|+.++.+||..+... ++++|++++.
T Consensus 98 ~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~ 173 (906)
T PRK14720 98 KW-AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLK 173 (906)
T ss_pred ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 45 7777888888889999999999998875 799999999999999999999999999999887664 8999999999
Q ss_pred HHHHh
Q 027404 215 RAVHS 219 (224)
Q Consensus 215 rAL~l 219 (224)
+|+..
T Consensus 174 KAV~~ 178 (906)
T PRK14720 174 KAIYR 178 (906)
T ss_pred HHHHH
Confidence 99875
No 114
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.05 E-value=1.2e-05 Score=74.87 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++..|..+|..||+.||++..+++.-|.++. .+|+-..|+.-+.++|++.|+...+....|.+++. .|.+++|+.-|
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~DF 129 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEADF 129 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHHH
Confidence 58899999999999999999999999999887 69999999999999999999999999989988876 57899999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
++.|+.+|.+
T Consensus 130 ~~vl~~~~s~ 139 (504)
T KOG0624|consen 130 DQVLQHEPSN 139 (504)
T ss_pred HHHHhcCCCc
Confidence 9999999964
No 115
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.5e-05 Score=74.07 Aligned_cols=89 Identities=16% Similarity=0.291 Sum_probs=77.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
|+. -.++|...|+++|.++|...-+...+|.++. +.|.++.++..+++++..-|+ ...+..+|.++.. .+.+++|.
T Consensus 416 dp~-~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A-~Ne~Q~am 491 (564)
T KOG1174|consen 416 DPR-MREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRA-QNEPQKAM 491 (564)
T ss_pred Cch-hHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHH-hhhHHHHH
Confidence 444 3489999999999999999999999999876 799999999999999988775 4667779998765 46799999
Q ss_pred HHHHHHHHhCCCC
Q 027404 211 SYFDRAVHSAPDD 223 (224)
Q Consensus 211 ~~ferAL~l~P~d 223 (224)
++|..|+++||++
T Consensus 492 ~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 492 EYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHhcCccc
Confidence 9999999999986
No 116
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=9.6e-06 Score=75.11 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 134 KESESMDVYYQEMIKAY--PE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 134 ~d~e~A~~~yerALe~d--P~-na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
++++-+...|++|+... |+ -+++|+|++.++. -.||+.-|.+||+-|+.-||+|.+++.++|. +..+.|+.++|.
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV-~iGD~nlA~rcfrlaL~~d~~h~ealnNLav-L~~r~G~i~~Ar 449 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV-TIGDFNLAKRCFRLALTSDAQHGEALNNLAV-LAARSGDILGAR 449 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEE-eccchHHHHHHHHHHhccCcchHHHHHhHHH-HHhhcCchHHHH
Confidence 44445555555554432 21 1345555555444 3578888888888888888888888888885 455678899999
Q ss_pred HHHHHHHHhCCC
Q 027404 211 SYFDRAVHSAPD 222 (224)
Q Consensus 211 ~~ferAL~l~P~ 222 (224)
.++..|-.++|+
T Consensus 450 sll~~A~s~~P~ 461 (478)
T KOG1129|consen 450 SLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhhhhCcc
Confidence 999988888885
No 117
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=5.6e-05 Score=66.08 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee 208 (224)
++|++|..-|+.||+.-|..+ -++.|-|.++. .++..+.|+.-+.+||+++|.+-.++...|.+|-. ...|++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek~ee 186 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEKYEE 186 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhhHHH
Confidence 689999999999999999875 35556676665 68999999999999999999999999888877755 467999
Q ss_pred HHHHHHHHHHhCCC
Q 027404 209 AKSYFDRAVHSAPD 222 (224)
Q Consensus 209 A~~~ferAL~l~P~ 222 (224)
|++-|++.+.++|.
T Consensus 187 aleDyKki~E~dPs 200 (271)
T KOG4234|consen 187 ALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999995
No 118
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.98 E-value=1.9e-05 Score=47.50 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027404 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (224)
Q Consensus 154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d 188 (224)
|.+++.+|.+++ .+|++++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 355666666665 4666666666666666666654
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=5.3e-05 Score=67.86 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+.+++|+++|+..|+-||.|..++----.++. .+|+.-+|++.+..-++.-++|+++|..++.+|+. .++|++|.-+|
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHHHHHHH
Confidence 68899999999999999999877765333454 68999999999999999999999999999998876 47899999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+..+-++|.+
T Consensus 178 EE~ll~~P~n 187 (289)
T KOG3060|consen 178 EELLLIQPFN 187 (289)
T ss_pred HHHHHcCCCc
Confidence 9999999975
No 120
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2e-05 Score=74.50 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA 209 (224)
|++..|.++|-.||.+||+|. .++.|.|.+.. +.|+..+|+.-++.|+.+||.+-.++...|.++..+ +++++|
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l-e~~e~A 340 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL-EKWEEA 340 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 688999999999999999974 67888888876 799999999999999999999999999999998775 579999
Q ss_pred HHHHHHHHHhCC
Q 027404 210 KSYFDRAVHSAP 221 (224)
Q Consensus 210 ~~~ferAL~l~P 221 (224)
++.|++|++..-
T Consensus 341 V~d~~~a~q~~~ 352 (486)
T KOG0550|consen 341 VEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHhhcc
Confidence 999999998754
No 121
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.95 E-value=1.7e-05 Score=48.24 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027404 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (224)
Q Consensus 154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d 188 (224)
+.+|+++|.++. .++++++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence 356666666665 4677777777777777776653
No 122
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=0.00014 Score=65.23 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCh
Q 027404 133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDA 206 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~ 206 (224)
.++|..|+..|+.-|..-|+.+ .++|.||..++ .+|+++.|..+|.++++-.|++ +++++.+|.++..+ ++.
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l-~~~ 231 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL-GNT 231 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh-cCH
Confidence 3689999999999999999985 89999999999 6999999999999999988865 57799999988764 679
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027404 207 PRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 207 eeA~~~ferAL~l~P~d 223 (224)
++|-..|++.++--|+.
T Consensus 232 d~A~atl~qv~k~YP~t 248 (262)
T COG1729 232 DEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 99999999999988863
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.93 E-value=0.00013 Score=61.94 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc---
Q 027404 133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINH--- 203 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~~--- 203 (224)
.+++.+|+..|++.+...|..+ .+++.+|.+++ ..+++++|+..|++.|+..|+++. +++.+|.+.+...
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~ 96 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI 96 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence 3789999999999999999874 78899999988 699999999999999999998754 6777776654432
Q ss_pred -------CChHHHHHHHHHHHHhCCCC
Q 027404 204 -------KDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 204 -------gd~eeA~~~ferAL~l~P~d 223 (224)
....+|+..|+..++.-|+.
T Consensus 97 ~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 97 LRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp H-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred hhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 12458999999999999874
No 124
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00012 Score=69.14 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
++..+|++.+.++|..+|++++++...|.++. ..++++.|++++++|+.+.|++-..|..|+.+|.. .+++++|+..+
T Consensus 214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALlaL 291 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLAL 291 (395)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 56789999999999999999999999999998 69999999999999999999999999999999876 57999999777
Q ss_pred HH
Q 027404 214 DR 215 (224)
Q Consensus 214 er 215 (224)
..
T Consensus 292 Ns 293 (395)
T PF09295_consen 292 NS 293 (395)
T ss_pred hc
Confidence 53
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.00023 Score=56.91 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCh
Q 027404 133 GKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDA 206 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~ 206 (224)
.++...+...+++.+..+|+. ..+.+.+|.+++ ..|++++|+..|++++...|++ ..+...++.+++. .+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence 467888999999999999999 477788999988 5999999999999999988766 3466778888776 5789
Q ss_pred HHHHHHHHH
Q 027404 207 PRAKSYFDR 215 (224)
Q Consensus 207 eeA~~~fer 215 (224)
++|+..++.
T Consensus 102 d~Al~~L~~ 110 (145)
T PF09976_consen 102 DEALATLQQ 110 (145)
T ss_pred HHHHHHHHh
Confidence 999999966
No 126
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.90 E-value=8.5e-05 Score=59.08 Aligned_cols=68 Identities=19% Similarity=0.093 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
|.+++++|+++. ..|+.++|+.+|++|++..+.. ..++..+|..+.. .|++++|+.+|++++...|++
T Consensus 1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCc
Confidence 357899999886 7999999999999999986655 4577788888865 589999999999999988873
No 127
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.90 E-value=0.00017 Score=59.24 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc---
Q 027404 133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINH--- 203 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~~--- 203 (224)
.+++++|++.|+......|..+ .+...++.+++ ..+++++|+..+++-|+++|+|+. |++..|...+.+.
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~ 101 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS 101 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence 3789999999999999999875 78888898888 699999999999999999999876 4555665554421
Q ss_pred -----------CChHHHHHHHHHHHHhCCCC
Q 027404 204 -----------KDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 204 -----------gd~eeA~~~ferAL~l~P~d 223 (224)
....+|...|++.|+.-|+.
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 11678999999999998874
No 128
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=8.4e-05 Score=68.63 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCChHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.++++|..++.+|++.||++.-+-.-+|.+.. ..|+|++|++.++++++.||++ ++++..+-.+|.+ .|+.++.+.+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHHHHHH
Confidence 45666666666666666666666666666655 4666666666666666666655 3344444445443 3556666666
Q ss_pred HHHHHHhCCC
Q 027404 213 FDRAVHSAPD 222 (224)
Q Consensus 213 ferAL~l~P~ 222 (224)
+.++++..++
T Consensus 272 L~~~~~~~~g 281 (389)
T COG2956 272 LRRAMETNTG 281 (389)
T ss_pred HHHHHHccCC
Confidence 6666665543
No 129
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.88 E-value=5e-05 Score=73.70 Aligned_cols=86 Identities=26% Similarity=0.345 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 027404 132 SGKESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-----PGDGN---VLSMY 195 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~--------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld-----P~da~---al~~l 195 (224)
..+++.+|+..|++|+.+ +|.-+.++.|||.+++ .+|++++|+.|+++|+++- .++++ .+.++
T Consensus 253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 337999999999999976 4444689999999887 7999999999999999762 23444 45566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh
Q 027404 196 GDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 196 G~ll~~~~gd~eeA~~~ferAL~l 219 (224)
+.++ ..++++++|+.+|++++++
T Consensus 332 ~~~~-~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 332 AAIL-QSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHH-HHhcchhHHHHHHHHHHHH
Confidence 6555 4467899999999999985
No 130
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=9.4e-05 Score=69.52 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++.+|+.++.++|+.+|+|.-++|--|.++. ..++++.|+..|++|++++|+|..+...+..+....+...+....+|
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999987 69999999999999999999999998887765443333344557788
Q ss_pred HHHHHhCC
Q 027404 214 DRAVHSAP 221 (224)
Q Consensus 214 erAL~l~P 221 (224)
.+++..-+
T Consensus 350 ~~mF~k~~ 357 (397)
T KOG0543|consen 350 ANMFAKLA 357 (397)
T ss_pred HHHhhccc
Confidence 88776543
No 131
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.86 E-value=0.00022 Score=58.69 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCChHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----GNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d----a~al~~lG~ll~~~~gd~eeA 209 (224)
++.+.|++.|.+||.+-|.++.+|+|-|.++. .+|+.++|+.-+++|+++.-.- +.++...|.++ .+.|+-++|
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly-Rl~g~dd~A 134 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY-RLLGNDDAA 134 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHhCchHHH
Confidence 58899999999999999999999999999987 7999999999999999986543 34555566554 556788999
Q ss_pred HHHHHHHHHh
Q 027404 210 KSYFDRAVHS 219 (224)
Q Consensus 210 ~~~ferAL~l 219 (224)
..-|+.|-++
T Consensus 135 R~DFe~AA~L 144 (175)
T KOG4555|consen 135 RADFEAAAQL 144 (175)
T ss_pred HHhHHHHHHh
Confidence 9999888765
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.86 E-value=6.7e-05 Score=77.00 Aligned_cols=90 Identities=22% Similarity=0.122 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCChHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN--HKDAPRAK 210 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~--~gd~eeA~ 210 (224)
..+|++|++..+++|+.||+|..++..+|.++....++.++|.++|..|++++|++..||-.++++|-.. --+++++-
T Consensus 15 nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~ 94 (1238)
T KOG1127|consen 15 NKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAA 94 (1238)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhH
Confidence 3689999999999999999999999999999986555699999999999999999999999999876431 13578899
Q ss_pred HHHHHHHHhCCC
Q 027404 211 SYFDRAVHSAPD 222 (224)
Q Consensus 211 ~~ferAL~l~P~ 222 (224)
.+|.+++-+.|+
T Consensus 95 ~~yq~~~l~le~ 106 (1238)
T KOG1127|consen 95 KCYQRAVLILEN 106 (1238)
T ss_pred HHHHHHHHhhhh
Confidence 999999887765
No 133
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.85 E-value=4e-05 Score=69.21 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
..+..|...|+...+..+..+.+++.+|.+.. .+|++++|++.++.|+..+|++++++.++..+....++..+.+.+++
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 45688999999988777888999999998877 69999999999999999999999999999877666544447788899
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
.+....+|++
T Consensus 260 ~qL~~~~p~h 269 (290)
T PF04733_consen 260 SQLKQSNPNH 269 (290)
T ss_dssp HHCHHHTTTS
T ss_pred HHHHHhCCCC
Confidence 8888888865
No 134
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.85 E-value=0.0001 Score=73.84 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP-GDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP-~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
.+.++.+.+++|++.+|+|+.+.+.+|..+. .+++.+.|..+.++++++++ +++.+|..++.++- ..+++.+|+...
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A-~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS-a~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYA-EQRQLTSALDYAREALALNRGDSAKAWHLLALVLS-AQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhhHHHHHHH
Confidence 4678999999999999999999999998776 68999999999999999955 56778999987765 467999999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+.|+.--|+|
T Consensus 537 d~al~E~~~N 546 (799)
T KOG4162|consen 537 DAALEEFGDN 546 (799)
T ss_pred HHHHHHhhhh
Confidence 9999887775
No 135
>PRK15331 chaperone protein SicA; Provisional
Probab=97.83 E-value=8.8e-05 Score=62.28 Aligned_cols=73 Identities=12% Similarity=-0.024 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 027404 150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW 224 (224)
Q Consensus 150 dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d~ 224 (224)
.++.-+..+.+|.-++ .+|++++|+..|+-+...+|.+++.|..||.++. +.++|++|+..|-.|..++++|+
T Consensus 33 s~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 33 PQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred CHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCC
Confidence 3444477788888888 5999999999999999999999999999998764 46789999999999999998874
No 136
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=4.5e-05 Score=67.38 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=81.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
|+-|-+.-|.--|.+++.++|.-|++++-+|..+. ..|+++.|.+.|...+++||.+..+..+.|..++. .|+++-|.
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LAq 153 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLAQ 153 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhhH
Confidence 44567889999999999999999999999998876 69999999999999999999999999888877654 78999999
Q ss_pred HHHHHHHHhCCCCC
Q 027404 211 SYFDRAVHSAPDDW 224 (224)
Q Consensus 211 ~~ferAL~l~P~d~ 224 (224)
.-|.+--+.+|+|.
T Consensus 154 ~d~~~fYQ~D~~DP 167 (297)
T COG4785 154 DDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHHhcCCCCh
Confidence 99998888888874
No 137
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.82 E-value=7e-05 Score=76.48 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCChHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPR 208 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~~gd~ee 208 (224)
.++|..+...+..|+...-+.+ +.+|.+|+.++ .+|++++|-.||.+|++.+|++ ...+.-+|..+.. .++++.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-~~dle~ 360 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-RGDLEE 360 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-hchHHH
Confidence 3466666666666665553333 34666666654 4666666666666666666655 3344445544433 355666
Q ss_pred HHHHHHHHHHhCCCC
Q 027404 209 AKSYFDRAVHSAPDD 223 (224)
Q Consensus 209 A~~~ferAL~l~P~d 223 (224)
|+.+|++.++..|++
T Consensus 361 s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 361 SKFCFEKVLKQLPNN 375 (1018)
T ss_pred HHHHHHHHHHhCcch
Confidence 666666666666654
No 138
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.82 E-value=8.2e-05 Score=76.00 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---CChHHH
Q 027404 134 KESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---KDAPRA 209 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~---gd~eeA 209 (224)
|++++|..||.++++.+|++ ...++.+|.++. ..|+++.|+.||++.++..|++..++..+|.++.... ...++|
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 45555555555555555555 444555555544 3555555555555555555555555555554443320 023455
Q ss_pred HHHHHHHHHhCCCC
Q 027404 210 KSYFDRAVHSAPDD 223 (224)
Q Consensus 210 ~~~ferAL~l~P~d 223 (224)
..++.++++..|.|
T Consensus 400 ~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVD 413 (1018)
T ss_pred HHHHHHHHhccccc
Confidence 55555555555543
No 139
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=4.8e-05 Score=71.95 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDAL------------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGD 197 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~------------~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~----al~~lG~ 197 (224)
.+.+.|+.+|+++|.++|++.. ++..-|.-++ ..|.+.+|.++|..||.++|++.. .|.+.+.
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f-k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF-KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh-hccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 6889999999999999999863 3344455555 589999999999999999998643 4566666
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 198 LIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 198 ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+... .|+..+|+.-.+.|++++|.+
T Consensus 296 v~~r-Lgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 296 VNIR-LGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred hhcc-cCCchhhhhhhhhhhhcCHHH
Confidence 6654 478999999999999999864
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.78 E-value=8.8e-05 Score=76.19 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|...|+++|++||+|+.++++||.++.+ . ++++|++++.+|++. +.. .+++.++.+++
T Consensus 130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~--------------~i~-~kq~~~~~e~W 192 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYR--------------FIK-KKQYVGIEEIW 192 (906)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHH--------------HHh-hhcchHHHHHH
Confidence 789999999999999999999999999999875 5 999999999999988 223 34688888999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
++.+..+|++
T Consensus 193 ~k~~~~~~~d 202 (906)
T PRK14720 193 SKLVHYNSDD 202 (906)
T ss_pred HHHHhcCccc
Confidence 9988888876
No 141
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.78 E-value=7.1e-05 Score=44.97 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+.+|..+|.+++. .+++++|+.+|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 4678899998876 579999999999999999986
No 142
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00013 Score=71.07 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++++|+.+|-+|-++-|....-..-+|.=+. +++.++-|+++|.+|+.+.|+|+-++..+|.+.+.. +.|.+|+.||
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~-~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f 437 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM-RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY-EEYPEALKYF 437 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHH-HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH-hhhHHHHHHH
Confidence 55666666666666666666555555554333 567777888888888888888888888888776653 5688888888
Q ss_pred HHHHH
Q 027404 214 DRAVH 218 (224)
Q Consensus 214 erAL~ 218 (224)
+.++.
T Consensus 438 ~~~l~ 442 (611)
T KOG1173|consen 438 QKALE 442 (611)
T ss_pred HHHHH
Confidence 87774
No 143
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.77 E-value=0.00011 Score=72.60 Aligned_cols=87 Identities=8% Similarity=-0.007 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
|+.++|..+.+.+++.|+.....|+.||.++. ...+|.+|++||+.|+++.|++-.+|..++.+..+ .++++-....-
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHHHHH
Confidence 56678888888888888888888888887665 57788888888888888888888888877765544 35666666666
Q ss_pred HHHHHhCCC
Q 027404 214 DRAVHSAPD 222 (224)
Q Consensus 214 erAL~l~P~ 222 (224)
.+.+++.|.
T Consensus 133 ~~LLql~~~ 141 (700)
T KOG1156|consen 133 NQLLQLRPS 141 (700)
T ss_pred HHHHHhhhh
Confidence 666666654
No 144
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.77 E-value=3.6e-05 Score=54.75 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHH---CC-CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 133 GKESESMDVYYQEMIKA---YP-ED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~---dP-~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
.+++++|+.+|++|+++ .+ .+ +.++.++|.++. .+|++++|+++|++|+++
T Consensus 18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 37999999999999965 22 22 578889999987 799999999999999986
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.75 E-value=0.00028 Score=62.99 Aligned_cols=70 Identities=21% Similarity=0.120 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+...++..|..+....|++++|+..|++.|...|+. +.+++.+|.+++. .+++++|+.+|+++++..|++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence 456666666655334799999999999999999998 5799999998876 579999999999999999875
No 146
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.00018 Score=66.45 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee 208 (224)
.+|++|+...++.+.+.+..- ..+..||..+. ...+.++|...+.||++.||+...+-..+|.+... .|+|+.
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~ 232 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQK 232 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHH
Confidence 578888888888888887763 34445555443 46789999999999999999999998899998765 689999
Q ss_pred HHHHHHHHHHhCCCC
Q 027404 209 AKSYFDRAVHSAPDD 223 (224)
Q Consensus 209 A~~~ferAL~l~P~d 223 (224)
|++.++++++.||++
T Consensus 233 AV~~~e~v~eQn~~y 247 (389)
T COG2956 233 AVEALERVLEQNPEY 247 (389)
T ss_pred HHHHHHHHHHhChHH
Confidence 999999999999975
No 147
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=9.5e-05 Score=68.65 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCChHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---da~al~~lG~ll~~~~gd~eeA~ 210 (224)
++.+.|..+|++.|+.-..+++.+.|+|.++. ..++++-++.+|+||+...-+ -+++|+++|.+... -||+.-|.
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA~ 415 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNLAK 415 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHHHH
Confidence 56677777777777777777777777776655 567777777777777765432 35677777766544 46777777
Q ss_pred HHHHHHHHhCCCC
Q 027404 211 SYFDRAVHSAPDD 223 (224)
Q Consensus 211 ~~ferAL~l~P~d 223 (224)
.+|+-|+..||++
T Consensus 416 rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 416 RCFRLALTSDAQH 428 (478)
T ss_pred HHHHHHhccCcch
Confidence 7787777777764
No 148
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.71 E-value=0.00035 Score=70.98 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
|+.++|...+..|-.++|.|.+.|.-++.... .+|.+.+|.-||.|||.++|.+-...+..+.++ +..|++.+|...|
T Consensus 187 Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~-~~~G~~~~Am~~f 264 (895)
T KOG2076|consen 187 GDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLY-QKTGDLKRAMETF 264 (895)
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHhChHHHHHHHH
Confidence 69999999999999999999999999999876 699999999999999999999998888888765 5578999999999
Q ss_pred HHHHHhCC
Q 027404 214 DRAVHSAP 221 (224)
Q Consensus 214 erAL~l~P 221 (224)
.+++.++|
T Consensus 265 ~~l~~~~p 272 (895)
T KOG2076|consen 265 LQLLQLDP 272 (895)
T ss_pred HHHHhhCC
Confidence 99999998
No 149
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.70 E-value=7.8e-05 Score=45.20 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+.+|.++|.++.. .+++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence 4688999998866 578999999999999999975
No 150
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.65 E-value=0.00013 Score=71.96 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
++|.......++.|...|.|++.+...|..++ ..|+.++|..+.+.++..|+...-.|.-+|.++. ..++|++|+.+|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHH
Confidence 46777888888899999999999999999887 7999999999999999999999999999997654 457899999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+.|+++.|+|
T Consensus 99 ~nAl~~~~dN 108 (700)
T KOG1156|consen 99 RNALKIEKDN 108 (700)
T ss_pred HHHHhcCCCc
Confidence 9999999987
No 151
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.63 E-value=0.0015 Score=49.50 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~-na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
++++.|...+.+++...+. ...++.+++..+. ..+++++|..++.+++...|.....+..++..+. ..+.+++|...
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 258 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEA 258 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHH
Confidence 3455555555555555555 4555555554443 3445555555555555555554444444444444 33445555555
Q ss_pred HHHHHHhCC
Q 027404 213 FDRAVHSAP 221 (224)
Q Consensus 213 ferAL~l~P 221 (224)
+.+++...|
T Consensus 259 ~~~~~~~~~ 267 (291)
T COG0457 259 LEKALELDP 267 (291)
T ss_pred HHHHHHhCc
Confidence 555555544
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0003 Score=62.85 Aligned_cols=85 Identities=22% Similarity=0.234 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fer 215 (224)
.+.|...|.+|++..+.+..+|..+|.+-+...++.+.|...|+++++.-|.+...|..|...+.. .++.+.|..+|++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lfer 95 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 677888888888655666778888887655335666668888888888888888888888777665 4678888888888
Q ss_pred HHHhCC
Q 027404 216 AVHSAP 221 (224)
Q Consensus 216 AL~l~P 221 (224)
++..-|
T Consensus 96 ~i~~l~ 101 (280)
T PF05843_consen 96 AISSLP 101 (280)
T ss_dssp HCCTSS
T ss_pred HHHhcC
Confidence 876544
No 153
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.58 E-value=5.7e-05 Score=72.26 Aligned_cols=88 Identities=20% Similarity=0.111 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+.++.|+..|-+||+++|+++..+.+-+.++. +.+++..|+.-+.+||+++|....+|..-|.+... .+.+.+|...|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHHH
Confidence 68999999999999999999988888876555 68999999999999999999999999988877654 56899999999
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
+....+.|++
T Consensus 96 ~~~~~l~Pnd 105 (476)
T KOG0376|consen 96 EKVKKLAPND 105 (476)
T ss_pred HHhhhcCcCc
Confidence 9999999986
No 154
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.55 E-value=0.00036 Score=59.55 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-----------DFVKAEEYCGRAILAKPGDGNVLSMYG 196 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G-----------d~eeAe~~~erAL~ldP~da~al~~lG 196 (224)
.-+++|+.=|++||.++|+...+++++|.++.. ++ -|++|..||++|.+.+|++......|-
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 357889999999999999999999999998763 32 267899999999999999987665543
No 155
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.51 E-value=0.00099 Score=62.62 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
++...=++..++.+..+|++|.++..+|..++ .++.+.+|..+|+.||+..|.. ..+..+|.++.. .|+.++|.+.+
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~-~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPSA-SDYAELADALDQ-LGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHH-cCChHHHHHHH
Confidence 56677788899999999999999999999887 7999999999999999998854 455568888755 57899999999
Q ss_pred HHHHHh
Q 027404 214 DRAVHS 219 (224)
Q Consensus 214 erAL~l 219 (224)
+.++.+
T Consensus 385 ~e~L~~ 390 (400)
T COG3071 385 REALLL 390 (400)
T ss_pred HHHHHH
Confidence 998854
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.0009 Score=58.85 Aligned_cols=69 Identities=14% Similarity=0.002 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL---SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al---~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
++..++..|.-+. ..|++++|++.|++++...|+.+.+. ..+|.+++. .+++++|+.+|++.+++.|++
T Consensus 31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCC
Confidence 5666777777776 58999999999999999999887664 678888776 578999999999999999986
No 157
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.49 E-value=0.00016 Score=66.75 Aligned_cols=65 Identities=15% Similarity=0.331 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ 197 (224)
..|+.++|...|+.|++++|.+++++..+|.|.. ...+..+|-+||-+|+.++|.+..++.+.++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3478899999999999999999999999999986 5789999999999999999999999877653
No 158
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.001 Score=57.79 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCChHHHH
Q 027404 134 KESESMDVYYQEMIK-AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--GNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 134 ~d~e~A~~~yerALe-~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d--a~al~~lG~ll~~~~gd~eeA~ 210 (224)
|++.+|..+|++++. +..+|+..+..+|.++. ..+++..|...+++..+.+|.. ++....+|+.+.. .|++++|+
T Consensus 103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Ae 180 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAE 180 (251)
T ss_pred hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHH
Confidence 688999999999986 78889999999999988 5899999999999999998863 4456667888754 67899999
Q ss_pred HHHHHHHHhCCC
Q 027404 211 SYFDRAVHSAPD 222 (224)
Q Consensus 211 ~~ferAL~l~P~ 222 (224)
..|+.|+.--|+
T Consensus 181 safe~a~~~ypg 192 (251)
T COG4700 181 SAFEVAISYYPG 192 (251)
T ss_pred HHHHHHHHhCCC
Confidence 999999987774
No 159
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.44 E-value=0.0011 Score=64.76 Aligned_cols=86 Identities=19% Similarity=0.089 Sum_probs=74.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404 130 GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 130 ~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA 209 (224)
-+..+++++|..+..+||+.+|..++.+..-|.++. ..|++++|.++++.|-.+|+.|..+-...+..++ +.+++++|
T Consensus 204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L-Ra~~~e~A 281 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLL-RAGRIEEA 281 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH-HCCCHHHH
Confidence 455689999999999999999999999999999997 6999999999999999999999877766665554 46889999
Q ss_pred HHHHHHHH
Q 027404 210 KSYFDRAV 217 (224)
Q Consensus 210 ~~~ferAL 217 (224)
+..+..-.
T Consensus 282 ~~~~~~Ft 289 (517)
T PF12569_consen 282 EKTASLFT 289 (517)
T ss_pred HHHHHhhc
Confidence 98876543
No 160
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.42 E-value=0.00033 Score=70.03 Aligned_cols=85 Identities=9% Similarity=-0.010 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
.++..|..+|.+++..+|+++++|+|++.++. +.++..+|...+++|++-+-++-.+|-||-.+..+ -+.+++|+..|
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi-~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd-vge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI-RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD-VGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH-HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh-cccHHHHHHHH
Confidence 68899999999999999999999999999887 79999999999999999999999999998777665 46899999999
Q ss_pred HHHHHhC
Q 027404 214 DRAVHSA 220 (224)
Q Consensus 214 erAL~l~ 220 (224)
.+.+.+.
T Consensus 611 ~rll~~~ 617 (777)
T KOG1128|consen 611 HRLLDLR 617 (777)
T ss_pred HHHHHhh
Confidence 9988764
No 161
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.41 E-value=0.0002 Score=66.84 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e---~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
++|.++.+.+++.++.+|.-+.+.++.-.+++. .-+++.+|++.+.++|.++|+|++++...+.+++. ...|++|+
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~-dE~YD~AI 361 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG-DEMYDDAI 361 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-hHHHHHHH
Confidence 688899999999999999988777765444332 35789999999999999999999999999888764 45799999
Q ss_pred HHHHHHHHhCCCC
Q 027404 211 SYFDRAVHSAPDD 223 (224)
Q Consensus 211 ~~ferAL~l~P~d 223 (224)
.-|++|..+++++
T Consensus 362 ~dye~A~e~n~sn 374 (504)
T KOG0624|consen 362 HDYEKALELNESN 374 (504)
T ss_pred HHHHHHHhcCccc
Confidence 9999999999976
No 162
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.40 E-value=0.0038 Score=47.31 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCChHHH
Q 027404 134 KESESMDVYYQEMIKAYP---EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-DGNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP---~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~-da~al~~lG~ll~~~~gd~eeA 209 (224)
++++.|..+|.+++..+| .....+..++..+. ..++++.|+..+.+++...+. ...++..++..+.. .+++++|
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a 221 (291)
T COG0457 144 GDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEA 221 (291)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHH
Confidence 566666666666666555 23344444444333 356666666666666666666 45555555555433 3456666
Q ss_pred HHHHHHHHHhCC
Q 027404 210 KSYFDRAVHSAP 221 (224)
Q Consensus 210 ~~~ferAL~l~P 221 (224)
+.++.+++...|
T Consensus 222 ~~~~~~~~~~~~ 233 (291)
T COG0457 222 LEYYEKALELDP 233 (291)
T ss_pred HHHHHHHHhhCc
Confidence 666666666655
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.00012 Score=53.05 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404 168 RGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 168 ~Gd~eeAe~~~erAL~ldP~--da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P 221 (224)
+++++.|+.+|+++++.+|. +..++..+|.+++. .+++++|+.++++ ++.+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~ 55 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDP 55 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCC
Confidence 68999999999999999995 46667778999887 5789999999988 65554
No 164
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0016 Score=62.89 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll 199 (224)
+++++|..+|-+.-.+--+++++++.+|.++. ...+...|+++|.+|..+-|+|+.++..+|.+|
T Consensus 538 ~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLY 602 (840)
T ss_pred cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence 78888888888877777788888888888764 688888888888888888888888888777653
No 165
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.32 E-value=0.00066 Score=69.98 Aligned_cols=85 Identities=11% Similarity=0.029 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
.+++..|+.+||.|++.+|.|...|..+|.+|. ..|++..|++.|.||..++|.+-.+.+.-+..... .|.|.+|+..
T Consensus 575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~-~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkYkeald~ 652 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP-ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKYKEALDA 652 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH-hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhHHHHHHH
Confidence 478999999999999999999999999999987 69999999999999999999998888878876666 4679999999
Q ss_pred HHHHHHh
Q 027404 213 FDRAVHS 219 (224)
Q Consensus 213 ferAL~l 219 (224)
+...+..
T Consensus 653 l~~ii~~ 659 (1238)
T KOG1127|consen 653 LGLIIYA 659 (1238)
T ss_pred HHHHHHH
Confidence 9887754
No 166
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.32 E-value=0.00046 Score=41.58 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKP 186 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP 186 (224)
.+|+.+|.++. ..|++++|+.+|++|++++|
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 35555665554 36666666666666666655
No 167
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.29 E-value=0.0012 Score=64.37 Aligned_cols=67 Identities=24% Similarity=0.197 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
.+++.+|..+. ..|++++|++++++||+..|..++.+..-|.++-+ .|++++|.++++.|..+|+.|
T Consensus 195 w~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 195 WTLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhh
Confidence 34566787765 79999999999999999999999999999998866 689999999999999999865
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.18 E-value=0.0034 Score=56.12 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCChHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da---~al~~lG~ll~~~~gd~eeA~ 210 (224)
++.+.|...|+++++..|.+..+|..|..++. ..+|.+.|...|+|++..-|.+. .+|..+..+- ...|+.+...
T Consensus 50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE-~~~Gdl~~v~ 127 (280)
T PF05843_consen 50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE-SKYGDLESVR 127 (280)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH-HHHS-HHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHcCCHHHHH
Confidence 56777999999999999999999999999997 69999999999999998877665 4565555543 3458999999
Q ss_pred HHHHHHHHhCCCC
Q 027404 211 SYFDRAVHSAPDD 223 (224)
Q Consensus 211 ~~ferAL~l~P~d 223 (224)
.+++++.++-|++
T Consensus 128 ~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 128 KVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHhhhh
Confidence 9999999988763
No 169
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0023 Score=61.04 Aligned_cols=62 Identities=15% Similarity=0.032 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG 196 (224)
++++.|..+-+++|+.||++..++..-|.++. ..++.++|+-.|+.|+.+.|.+-+.|.-+-
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~-~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLI-ALERHTQAVIAFRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHH-hccchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 67888888888889999988888888888887 588888888888888888887776654443
No 170
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.0034 Score=60.85 Aligned_cols=86 Identities=13% Similarity=0.255 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA 216 (224)
Q Consensus 137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferA 216 (224)
.+-...|++|+...+.|...|.+|..+.. ..+.+.+--..|.+++..+|+++++|..-|.-.+..+..++.|.+.|-++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 35567899999999999999999998775 46668899999999999999999999877766666655699999999999
Q ss_pred HHhCCCC
Q 027404 217 VHSAPDD 223 (224)
Q Consensus 217 L~l~P~d 223 (224)
|+.+|+.
T Consensus 167 LR~npds 173 (568)
T KOG2396|consen 167 LRFNPDS 173 (568)
T ss_pred hhcCCCC
Confidence 9999975
No 171
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.15 E-value=0.0073 Score=45.55 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404 139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--GNVLSMYGDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d--a~al~~lG~ll~~~~gd~eeA~~~fer 215 (224)
.+..++++++.+|+|..+.+.+|..+. ..|++++|++.+..+++.++++ ..+.-.+-.++-. .|.-+.-..-|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHHH
Confidence 456899999999999999999999887 6999999999999999999876 4444444334333 3443334444444
No 172
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.14 E-value=0.00062 Score=44.06 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAK 162 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~ 162 (224)
.|++++|+++|+++|+.+|+|+.++..||.
T Consensus 14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 14 LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 379999999999999999999999999885
No 173
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.11 E-value=0.001 Score=40.03 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+.+|..+|.++.. .+++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQ-LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence 4678899988866 689999999999999999954
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.11 E-value=0.0048 Score=52.34 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
++..++..|..++ ..|++.+|+..|++.+...|.. +.++..+|.+++. .+++++|+..|++.++..|++
T Consensus 4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence 4578888888887 6999999999999999998864 5577888888876 579999999999999999975
No 175
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.08 E-value=0.003 Score=63.11 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=72.2
Q ss_pred cCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404 124 LGGGGD-GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202 (224)
Q Consensus 124 ~~~~~~-~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~ 202 (224)
.+.+++ +-..++.++|++++++||+..|+.+.+|..+|.++. .+++.+.|...|..-++.=|+....|..++.+- ..
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek 731 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EK 731 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HH
Confidence 344543 333367888888888888888888888888888875 678888888888888888887777777777643 33
Q ss_pred cCChHHHHHHHHHHHHhCCCC
Q 027404 203 HKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 203 ~gd~eeA~~~ferAL~l~P~d 223 (224)
.+..-+|...|+++.-.||.+
T Consensus 732 ~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCc
Confidence 456777777777777777764
No 176
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0051 Score=55.41 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHH--------HCCCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404 134 KESESMDVYYQEMIK--------AYPEDAL----------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY 195 (224)
Q Consensus 134 ~d~e~A~~~yerALe--------~dP~na~----------~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l 195 (224)
+++.+|...|+.||. ..|.+++ .+.||+.++. ..++|-+++++....+...|.+..||+..
T Consensus 192 ~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~frR 270 (329)
T KOG0545|consen 192 GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYFRR 270 (329)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 688999999999964 2566654 5679999886 68999999999999999999999999988
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404 196 GDLIWINHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 196 G~ll~~~~gd~eeA~~~ferAL~l~P~ 222 (224)
|.+.... =+.++|.+-|.++++++|.
T Consensus 271 akAhaa~-Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 271 AKAHAAV-WNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHhh-cCHHHHHHHHHHHHhcChh
Confidence 8766443 2479999999999999984
No 177
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.98 E-value=0.00022 Score=66.08 Aligned_cols=86 Identities=16% Similarity=0.040 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+.++.|+++|-+||+++|..+..+..-+.++. ..++..+|++-|..||.++|+-+.-|-.-+.+.. +.+++++|..+|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r-llg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER-LLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHH-HhhchHHHHHHH
Confidence 57999999999999999999999999999987 5889999999999999999998876655554433 357899999999
Q ss_pred HHHHHhCC
Q 027404 214 DRAVHSAP 221 (224)
Q Consensus 214 erAL~l~P 221 (224)
+.|.+++-
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 99998764
No 178
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.98 E-value=0.0079 Score=47.59 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
.++..++.++. ..|++++|+.++++++.++|.+..++..+-.++.. .|+..+|+.+|++..+
T Consensus 63 ~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34445665555 58999999999999999999999999888777765 6889999999998754
No 179
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.98 E-value=0.0018 Score=58.50 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
++++.|.+.++++-+.+.+...+...-|++-. ..| .+.+|..+|+.....-+..+..+..++.+... .|++++|++
T Consensus 145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~ 222 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEE 222 (290)
T ss_dssp T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence 68899999999999998887776666676655 455 58899999999877767888888888877765 689999999
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
.+++|+..+|++
T Consensus 223 ~L~~al~~~~~~ 234 (290)
T PF04733_consen 223 LLEEALEKDPND 234 (290)
T ss_dssp HHHHHCCC-CCH
T ss_pred HHHHHHHhccCC
Confidence 999999999875
No 180
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.98 E-value=0.0021 Score=59.58 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=51.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+.|+.++|...|+.|++++|.+++++..+|.+. +..++.-+|..+|-+|+.++|.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~-E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFR-EMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHH-HhhhhhHhhhhhhheeeeeCCCc
Confidence 589999999999999999999999999999876 44678999999999999999975
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.91 E-value=0.0042 Score=55.23 Aligned_cols=83 Identities=20% Similarity=0.231 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHH--CCCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKA--YPED----ALVLANYAKFLKEIR-GDFVKAEEYCGRAILAKP--GD----GNVLSMYGDLIWI 201 (224)
Q Consensus 135 d~e~A~~~yerALe~--dP~n----a~~l~nlA~~l~e~~-Gd~eeAe~~~erAL~ldP--~d----a~al~~lG~ll~~ 201 (224)
++++|+.+|++|+++ .-++ +.++.++|.++. .. +++++|+++|++|+++-- +. ...+..++.++..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 888999999999986 3333 368889999875 56 899999999999998621 11 2345567777665
Q ss_pred HcCChHHHHHHHHHHHHh
Q 027404 202 NHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 202 ~~gd~eeA~~~ferAL~l 219 (224)
.++|++|++.|++....
T Consensus 168 -l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 168 -LGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp -TT-HHHHHHHHHHHHHT
T ss_pred -hCCHHHHHHHHHHHHHH
Confidence 57999999999998864
No 182
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.011 Score=53.53 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe 214 (224)
.+..|--+|+..-+.-|-.+..++..|.+.. .++++++|+..++.|+..++++++++.++-.+..+.+.+.+--..+..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 4778888899998878888999999998876 699999999999999999999999999987666555554444444555
Q ss_pred HHHHhCCC
Q 027404 215 RAVHSAPD 222 (224)
Q Consensus 215 rAL~l~P~ 222 (224)
+.....|+
T Consensus 267 QLk~~~p~ 274 (299)
T KOG3081|consen 267 QLKLSHPE 274 (299)
T ss_pred HHHhcCCc
Confidence 55555554
No 183
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.82 E-value=0.015 Score=47.87 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+..++.-|.-.. ..|+|++|++.|+.....-|.. ..+...++.+++. .+++++|++.+++-|+++|++
T Consensus 10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence 466777777666 5899999999999999987754 5577788888876 578999999999999999986
No 184
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.80 E-value=0.0025 Score=39.63 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 156 VLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
++.++|.++. .+|++++|+++|++|+.
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 4677787776 58888888888888543
No 185
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.79 E-value=0.0023 Score=35.38 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027404 156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPG 187 (224)
Q Consensus 156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~ 187 (224)
+++++|.++. ..+++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYL-KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence 4555555554 356666666666666665554
No 186
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.69 E-value=0.013 Score=55.31 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=73.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404 130 GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 130 ~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA 209 (224)
.--++++++|.+..++++...-+.- ....++. + .-++...=++..++.++..|+++..+..+|.+++. ++.+.+|
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~-l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA 347 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPR-L--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKA 347 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChh-HHHHHhh-c--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHH
Confidence 3344899999999999999866544 4444443 2 47899999999999999999999999999998765 6789999
Q ss_pred HHHHHHHHHhCCCC
Q 027404 210 KSYFDRAVHSAPDD 223 (224)
Q Consensus 210 ~~~ferAL~l~P~d 223 (224)
..+|+.|++..|..
T Consensus 348 ~~~leaAl~~~~s~ 361 (400)
T COG3071 348 SEALEAALKLRPSA 361 (400)
T ss_pred HHHHHHHHhcCCCh
Confidence 99999999998863
No 187
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.63 E-value=0.01 Score=40.79 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG 196 (224)
+.++.+|..++ +.|+|++|.++.+++|++.|++.++.....
T Consensus 2 d~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 46778888887 799999999999999999999999976543
No 188
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.016 Score=55.78 Aligned_cols=87 Identities=23% Similarity=0.267 Sum_probs=71.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCChH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGDLIWINHKDAP 207 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~----al~~lG~ll~~~~gd~e 207 (224)
...+.+.|++.++.+.+.-|+.+..++.-|+++. .+|+.++|+++|++|+.....-.+ .++.++.++.. ..+++
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~ 322 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWE 322 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHH
Confidence 4578999999999999999999999999999987 799999999999999964443332 34556665544 46899
Q ss_pred HHHHHHHHHHHhC
Q 027404 208 RAKSYFDRAVHSA 220 (224)
Q Consensus 208 eA~~~ferAL~l~ 220 (224)
+|..+|.+.++.+
T Consensus 323 ~A~~~f~~L~~~s 335 (468)
T PF10300_consen 323 EAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998764
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.58 E-value=0.015 Score=51.76 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH--HHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYP--ED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----GNV--LSMYGDLIWI 201 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP--~n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d----a~a--l~~lG~ll~~ 201 (224)
+++++|+.+|++|+++-- +. ..++.++|.++. ..++|++|+..|++.+...-+. ..+ ++..+.+++.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 689999999999998621 22 267778998887 6999999999999999753221 112 2222333344
Q ss_pred HcCChHHHHHHHHHHHHhCCC
Q 027404 202 NHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 202 ~~gd~eeA~~~ferAL~l~P~ 222 (224)
..+|+..|...|++...++|.
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTT
T ss_pred HcCCHHHHHHHHHHHHhhCCC
Confidence 468999999999999999885
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.58 E-value=0.017 Score=54.35 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH---
Q 027404 134 KESESMDVYYQEMIKA----YPEDALVLANYAKFLKEI---RGDFVKAEEYCGR-AILAKPGDGNVLSMYGDLIWIN--- 202 (224)
Q Consensus 134 ~d~e~A~~~yerALe~----dP~na~~l~nlA~~l~e~---~Gd~eeAe~~~er-AL~ldP~da~al~~lG~ll~~~--- 202 (224)
++|+.-+.+.+..-.+ -++.+.+.+.||.++. + .|+.++|+..+.. .....+.+++.+..+|.++-++
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~ 233 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE 233 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 6777777666665555 4556788889998876 6 8999999999999 5566778899999999887432
Q ss_pred -----cCChHHHHHHHHHHHHhCCCCC
Q 027404 203 -----HKDAPRAKSYFDRAVHSAPDDW 224 (224)
Q Consensus 203 -----~gd~eeA~~~ferAL~l~P~d~ 224 (224)
....++|+.+|+++..++|+.|
T Consensus 234 s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 234 SNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred cCccchHHHHHHHHHHHHHHcCCcccc
Confidence 1247899999999999998764
No 191
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.50 E-value=0.011 Score=48.89 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404 160 YAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 160 lA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P 221 (224)
-|.++.+ .|+++.|++.|.+||.+.|..+.+|++.+..+. +.++.++|+.-+.+|+.+.-
T Consensus 49 ~~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 49 KAIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcC
Confidence 3555664 899999999999999999999999999998764 57889999999999999864
No 192
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.50 E-value=0.006 Score=35.97 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027404 156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPG 187 (224)
Q Consensus 156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~ 187 (224)
+++++|.++. ..|++++|+++|+++++..|+
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcC
Confidence 5566666655 466666666666666666665
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.50 E-value=0.029 Score=50.22 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHH---
Q 027404 132 SGKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWIN--- 202 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a---l~~lG~ll~~~--- 202 (224)
..|++++|+.+|++.....|..+ .+...++.+++ ..++++.|+.++++-|.+.|+++.+ ++..|...+..
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 34799999999999999999987 67788888888 6999999999999999999988765 33334333211
Q ss_pred -cCC---hHHHHHHHHHHHHhCCCC
Q 027404 203 -HKD---APRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 203 -~gd---~eeA~~~ferAL~l~P~d 223 (224)
.+| ..+|+..|+..|.--|+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCC
Confidence 122 346777777888877763
No 194
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.48 E-value=0.027 Score=56.93 Aligned_cols=85 Identities=8% Similarity=0.050 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI 201 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~ 201 (224)
.+++++|..++++|++..|... .++..+|.++. ..|++++|+.++++++...... ..++.+++.+++.
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 4689999999999998655432 35567787776 6999999999999999764432 2345566766654
Q ss_pred HcCChHHHHHHHHHHHHh
Q 027404 202 NHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 202 ~~gd~eeA~~~ferAL~l 219 (224)
.|++++|..++++++.+
T Consensus 544 -~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 544 -QGFLQAAYETQEKAFQL 560 (903)
T ss_pred -CCCHHHHHHHHHHHHHH
Confidence 68999999999999875
No 195
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.41 E-value=0.018 Score=61.53 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
+.+++|.++|+++++..-+-..+|..||.++. ++.+.++|...+.|||..-|. |.....-.|.+-+. .||.+++..
T Consensus 1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRt 1621 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRT 1621 (1710)
T ss_pred hcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHH
Confidence 67889999999999998888899999999987 688889999999999999998 77788777776654 578888888
Q ss_pred HHHHHHHhCCC
Q 027404 212 YFDRAVHSAPD 222 (224)
Q Consensus 212 ~ferAL~l~P~ 222 (224)
+|+-.+...|.
T Consensus 1622 lfEgll~ayPK 1632 (1710)
T KOG1070|consen 1622 LFEGLLSAYPK 1632 (1710)
T ss_pred HHHHHHhhCcc
Confidence 88888887774
No 196
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.36 E-value=0.0086 Score=56.29 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404 159 NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 159 nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P 221 (224)
.-|+-++ .+|.|++|+.||.++|+++|.++-.+.+.+.+|+.+ ++|..|+.-+..|+.++-
T Consensus 102 E~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~-K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 102 ERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ-KSFAQAEEDCEAAIALDK 162 (536)
T ss_pred Hhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH-HHHHHHHHhHHHHHHhhH
Confidence 3455566 699999999999999999999999999999888875 579999999999998863
No 197
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.064 Score=49.10 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHH---------------------------------
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYC--------------------------------- 178 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~--------------------------------- 178 (224)
..+++..|...|..|++.+|.+.++...|+.++. ..|+.+.|...|
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4478999999999999999999999999999887 588886544333
Q ss_pred -HHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404 179 -GRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 179 -erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P 221 (224)
++.++.||+|.++.+.++..+. ..|+.++|.+.+-..++.+-
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc
Confidence 2334578999999999998765 46889999998877776543
No 198
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.25 E-value=0.016 Score=57.57 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
|+-..|.+++++|+-..|... ..+.++|.++. .-+-.-.|-.++.+++.++-..+..++.+|+.++.+ .+.+.|++.
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l-~~i~~a~~~ 698 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL-KNISGALEA 698 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH-hhhHHHHHH
Confidence 678899999999999999876 46778998887 467778999999999999988888888899988765 579999999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
|++|++++|++
T Consensus 699 ~~~a~~~~~~~ 709 (886)
T KOG4507|consen 699 FRQALKLTTKC 709 (886)
T ss_pred HHHHHhcCCCC
Confidence 99999999986
No 199
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.22 E-value=0.0084 Score=32.98 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 190 ~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
.++..+|.+++. .+++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence 467788888776 478999999999999999864
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.20 E-value=0.018 Score=56.53 Aligned_cols=89 Identities=20% Similarity=0.079 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e--~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
...+..|+.+|-+|++.-|.....+.|+|.++.. ..|+.-.|+.-+..|+++||....+++.|+.++..+ +++.+|+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el-~r~~eal 465 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL-TRYLEAL 465 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH-hhHHHhh
Confidence 3567789999999999999999999999988763 235666888889999999999999999999998876 5799999
Q ss_pred HHHHHHHHhCCC
Q 027404 211 SYFDRAVHSAPD 222 (224)
Q Consensus 211 ~~ferAL~l~P~ 222 (224)
++...+....|.
T Consensus 466 ~~~~alq~~~Pt 477 (758)
T KOG1310|consen 466 SCHWALQMSFPT 477 (758)
T ss_pred hhHHHHhhcCch
Confidence 998888777774
No 201
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.025 Score=52.68 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA 209 (224)
++|..|...|-++|+..-.|+ .+|.|-|.+.+ ..|+|-.|+.-+.+|+.++|.|..+++.-+.+++.+. ++++|
T Consensus 95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe-~~~~a 172 (390)
T KOG0551|consen 95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE-RFAEA 172 (390)
T ss_pred hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH-HHHHH
Confidence 688999999999999866654 56667777766 5899999999999999999999999998888888764 68999
Q ss_pred HHHHHHHHHhC
Q 027404 210 KSYFDRAVHSA 220 (224)
Q Consensus 210 ~~~ferAL~l~ 220 (224)
+.|.+..+.++
T Consensus 173 ~nw~ee~~~~d 183 (390)
T KOG0551|consen 173 VNWCEEGLQID 183 (390)
T ss_pred HHHHhhhhhhh
Confidence 99988777654
No 202
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.18 E-value=0.062 Score=54.07 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+.++-|...|..||+.+|..-.+|...+.+-. ..|..+.-+..|++|+..-|.-...|.+|+.-.|.. ||...|...+
T Consensus 530 ~~~~carAVya~alqvfp~k~slWlra~~~ek-~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv~~ar~il 607 (913)
T KOG0495|consen 530 PAIECARAVYAHALQVFPCKKSLWLRAAMFEK-SHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDVPAARVIL 607 (913)
T ss_pred chHHHHHHHHHHHHhhccchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCcHHHHHHH
Confidence 45677888888888888888888888777654 678888888888888888888888888888777764 7888888888
Q ss_pred HHHHHhCCCC
Q 027404 214 DRAVHSAPDD 223 (224)
Q Consensus 214 erAL~l~P~d 223 (224)
.+|++.+|+.
T Consensus 608 ~~af~~~pns 617 (913)
T KOG0495|consen 608 DQAFEANPNS 617 (913)
T ss_pred HHHHHhCCCc
Confidence 8888888864
No 203
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.17 E-value=0.03 Score=53.81 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=64.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCh
Q 027404 131 DSGKESESMDVYYQEMIKAYPE----DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA 206 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe~dP~----na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ 206 (224)
...++.++|+++|++|+..... +...++.+++.+. .+.++++|..+|.+.++.+..-...|.+++.+.+...++.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 3448999999999999853332 2367778898876 6999999999999999987765555544443433445667
Q ss_pred -------HHHHHHHHHHHHh
Q 027404 207 -------PRAKSYFDRAVHS 219 (224)
Q Consensus 207 -------eeA~~~ferAL~l 219 (224)
++|.++|+++-.+
T Consensus 357 ~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 357 EEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 8888888877554
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.14 E-value=0.029 Score=44.33 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
+++++|+.++++++..||.|-.++..+-.++. .+|+..+|+++|++...
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 78999999999999999999999999998887 79999999999998754
No 205
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.10 E-value=0.0074 Score=53.82 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV 191 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a 191 (224)
.++.+.|.++|.+|+++-|..+..|+.+|... ++.|+++.|.+.|++.++++|.|...
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCcccccc
Confidence 46889999999999999999999999999765 58999999999999999999987543
No 206
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.09 E-value=0.031 Score=55.53 Aligned_cols=81 Identities=9% Similarity=-0.050 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
|++++|.+.++++- ..| +..+|..+..++. ..|+++.|+..+++++.+.|++...|..+..+|.. .|++++|.+.+
T Consensus 476 G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-~G~~~~A~~v~ 551 (697)
T PLN03081 476 GLLDEAYAMIRRAP-FKP-TVNMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-SGRQAEAAKVV 551 (697)
T ss_pred CCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-CCCHHHHHHHH
Confidence 56666666665541 223 3455666655555 57777888888888888888777777777766544 56788888887
Q ss_pred HHHHH
Q 027404 214 DRAVH 218 (224)
Q Consensus 214 erAL~ 218 (224)
+...+
T Consensus 552 ~~m~~ 556 (697)
T PLN03081 552 ETLKR 556 (697)
T ss_pred HHHHH
Confidence 76554
No 207
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.07 E-value=0.029 Score=54.53 Aligned_cols=85 Identities=18% Similarity=0.094 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C----
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---------------------D---- 188 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---------------------d---- 188 (224)
.+..+-+++.++||+++|+.+.++.-+|. +...-..+|+++|+||++.... +
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 57778889999999999999999998884 2345578899999998864221 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~ 222 (224)
..+-..+|.+++.+ |+.+||++.|+..++.+|.
T Consensus 259 ~y~KrRLAmCarkl-Gr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 259 VYAKRRLAMCARKL-GRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hhhHHHHHHHHHHh-CChHHHHHHHHHHHhhCCc
Confidence 11234567777764 7899999999999998885
No 208
>PRK10941 hypothetical protein; Provisional
Probab=96.05 E-value=0.048 Score=49.08 Aligned_cols=66 Identities=17% Similarity=0.047 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
.+.|+=.++. ..+++++|+++.++.+.++|+++.-+...|.++.+ .+.+..|..-++..++..|++
T Consensus 183 ml~nLK~~~~-~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 183 LLDTLKAALM-EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHH-HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCc
Confidence 3445555554 68999999999999999999999999989987765 578999999999999999986
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.05 E-value=0.013 Score=56.18 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C--CHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKP----G--DGNVLSMYGDLIWI 201 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP----~--da~al~~lG~ll~~ 201 (224)
|+|+.|+.+-+.-|++.-... .++.|+|.++. ..|+++.|+++|++++.+.- . .++..+.+|+.|..
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 789999988888877654432 57788998876 68999999999998875532 2 23445567887765
Q ss_pred HcCChHHHHHHHHHHHHhC
Q 027404 202 NHKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 202 ~~gd~eeA~~~ferAL~l~ 220 (224)
. .++++|+.|+.+-+++.
T Consensus 288 l-~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 288 L-KEVQKAITYHQRHLAIA 305 (639)
T ss_pred H-HHHHHHHHHHHHHHHHH
Confidence 4 57999999999887763
No 210
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.03 E-value=0.048 Score=43.11 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHc---CCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIR---GDF-------VKAEEYCGRAILAKPGDGNVLSMYGDLI 199 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~---Gd~-------eeAe~~~erAL~ldP~da~al~~lG~ll 199 (224)
+|++-+|.+..+..|..++++. .++..-|.+++... .+. -.|+++|.+++.+.|+.+..++.+|.-+
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l 88 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQL 88 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHh
Confidence 3689999999999999999987 55666676665322 222 2799999999999999999998888764
Q ss_pred HHHcCChHHHHHHHHHHHHh
Q 027404 200 WINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 200 ~~~~gd~eeA~~~ferAL~l 219 (224)
-. ...|++++...+++|.+
T Consensus 89 ~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 89 GS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hh-HHHHHHHHHHHHHHhcc
Confidence 33 23588999999988864
No 211
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.00 E-value=0.048 Score=56.01 Aligned_cols=87 Identities=15% Similarity=0.020 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
+++.+|..-..+.++..|+-..+..--|..+. ++|+.++|..+++..-...++|...+..+..+|.++ +.+++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 58999999999999999999888877777776 799999999888877777888888888888887664 6799999999
Q ss_pred HHHHHhCCC
Q 027404 214 DRAVHSAPD 222 (224)
Q Consensus 214 erAL~l~P~ 222 (224)
++|+..+|.
T Consensus 101 e~~~~~~P~ 109 (932)
T KOG2053|consen 101 ERANQKYPS 109 (932)
T ss_pred HHHHhhCCc
Confidence 999999996
No 212
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.97 E-value=0.025 Score=48.98 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404 139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201 (224)
Q Consensus 139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~ 201 (224)
|+.||.+|+.+.|.+...++.+|.+.. ..++.-.|+-||-|++...--++.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999998876 68999999999999998765568888888776644
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.025 Score=51.58 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHH----HC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH
Q 027404 134 KESESMDVYYQEMIK----AY--PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP 207 (224)
Q Consensus 134 ~d~e~A~~~yerALe----~d--P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e 207 (224)
||.+.|..+|++.-+ ++ -++-.++.|.+.++. .+.++..|...|.+.+..||.++.+.++-|.++.. .|+..
T Consensus 226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY-lg~l~ 303 (366)
T KOG2796|consen 226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY-LGKLK 303 (366)
T ss_pred ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHH-HHHHH
Confidence 566666666663221 11 122345555555443 45666666666666666666666666666655443 34566
Q ss_pred HHHHHHHHHHHhCCC
Q 027404 208 RAKSYFDRAVHSAPD 222 (224)
Q Consensus 208 eA~~~ferAL~l~P~ 222 (224)
+|+...++++.+.|.
T Consensus 304 DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHhccCCc
Confidence 666666666666664
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.93 E-value=0.02 Score=35.19 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
+.++.++|.++. .+|++++|+.++++++++
T Consensus 2 a~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYR-AQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence 356788888877 588888888888888865
No 215
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.90 E-value=0.015 Score=36.00 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 191 al~~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
+|.++|.++.. .|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 47789988765 68999999999996654
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.88 E-value=0.075 Score=50.09 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----
Q 027404 133 GKESESMDVYYQEMI-KAYPEDALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI---- 199 (224)
Q Consensus 133 ~~d~e~A~~~yerAL-e~dP~na~~l~nlA~~l~e~--------~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll---- 199 (224)
.|+.++|...+..++ ..++.+++++.-.|.++... ....++|+.+|+++.+++|+..... |++.++
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI-N~AtLL~~~g 273 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI-NAATLLMLAG 273 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHcC
Confidence 468899999999844 56777889999999887541 1236689999999999988653322 122211
Q ss_pred --------------------------------H---------HHcCChHHHHHHHHHHHHhCCCCC
Q 027404 200 --------------------------------W---------INHKDAPRAKSYFDRAVHSAPDDW 224 (224)
Q Consensus 200 --------------------------------~---------~~~gd~eeA~~~ferAL~l~P~d~ 224 (224)
| ...+++++|++++++++++.|..|
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1 124789999999999999999876
No 217
>PLN03077 Protein ECB2; Provisional
Probab=95.87 E-value=0.059 Score=54.75 Aligned_cols=79 Identities=9% Similarity=-0.008 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
|++++|.+.++++ ...|+ +.+|..+-.++. ..++.+.|+...+++++++|++...|..++++|.. .|++++|....
T Consensus 639 G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~-~g~~~~a~~vr 714 (857)
T PLN03077 639 GKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD-AGKWDEVARVR 714 (857)
T ss_pred CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-CCChHHHHHHH
Confidence 3444444444443 12332 233333333332 34555555555555555555555555555554433 34555555555
Q ss_pred HHH
Q 027404 214 DRA 216 (224)
Q Consensus 214 erA 216 (224)
+..
T Consensus 715 ~~M 717 (857)
T PLN03077 715 KTM 717 (857)
T ss_pred HHH
Confidence 433
No 218
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.045 Score=53.31 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=81.8
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027404 126 GGGD-GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK 204 (224)
Q Consensus 126 ~~~~-~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g 204 (224)
.||+ .-+++++.+|...|++||..|-.+..+|..|+.+-+ ......-|...+.||+.+-|--...|+-|-.. -...|
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ym-EE~Lg 155 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYM-EEMLG 155 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhc
Confidence 4554 667789999999999999999999999999999876 57788899999999999999988888877543 34557
Q ss_pred ChHHHHHHHHHHHHhCCC
Q 027404 205 DAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 205 d~eeA~~~ferAL~l~P~ 222 (224)
+..-|.+.|++-+...|+
T Consensus 156 Ni~gaRqiferW~~w~P~ 173 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPD 173 (677)
T ss_pred ccHHHHHHHHHHHcCCCc
Confidence 899999999999998886
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.061 Score=48.41 Aligned_cols=65 Identities=28% Similarity=0.317 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
.|+.|.-++ ..|||..|+..|..-|+.-|+. ++++++||.+++. +|++++|..+|..+++-.|+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCC
Confidence 556565566 5899999999999999998875 6688999999887 578999999999999988764
No 220
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.82 E-value=0.13 Score=46.92 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 142 YYQEMIKAYPEDALVLANYAKFLKEIRG-----------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 142 ~yerALe~dP~na~~l~nlA~~l~e~~G-----------d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
-|.+.++.+|.|..+|..|..+...... -.+..+.+|+|||+.+|++...+..|=.+.... -+.++..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~-~~~~~l~ 85 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV-WDSEKLA 85 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHH
Confidence 4566666666666666666654432110 123555666666666666665554443333222 2445555
Q ss_pred HHHHHHHHhCCCC
Q 027404 211 SYFDRAVHSAPDD 223 (224)
Q Consensus 211 ~~ferAL~l~P~d 223 (224)
.-+++++..+|++
T Consensus 86 ~~we~~l~~~~~~ 98 (321)
T PF08424_consen 86 KKWEELLFKNPGS 98 (321)
T ss_pred HHHHHHHHHCCCC
Confidence 5666666666543
No 221
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.044 Score=51.52 Aligned_cols=76 Identities=16% Similarity=0.068 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHH-CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 137 ESMDVYYQEMIKA-YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 137 e~A~~~yerALe~-dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
..-...+++.|-. ||+-| .++..||--+. ..|-|.+|++..+||+++||.|+.+....+.++ ++.+++.++.++
T Consensus 154 ~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl-em~~r~Keg~eF 231 (491)
T KOG2610|consen 154 IGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVL-EMNGRHKEGKEF 231 (491)
T ss_pred hhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHH-HhcchhhhHHHH
Confidence 3334455555544 55543 33344554444 366777777777777777777777666666655 335566666665
Q ss_pred HH
Q 027404 213 FD 214 (224)
Q Consensus 213 fe 214 (224)
..
T Consensus 232 M~ 233 (491)
T KOG2610|consen 232 MY 233 (491)
T ss_pred HH
Confidence 54
No 222
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.77 E-value=0.036 Score=41.79 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 173 KAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 173 eAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
..+.-++++++.+|+|..+.+.++..+.. .|++++|++.+-.+++.++++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc
Confidence 34677889999999999999999987754 789999999999999988864
No 223
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.64 E-value=0.061 Score=54.37 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHc
Q 027404 134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKP------GDGNVLSMYGDLIWINH 203 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP------~da~al~~lG~ll~~~~ 203 (224)
++.+.|..++.+.....+... ..+.+++.++. .+|++++|+.+|++|+.... ..+.++..+|.+++. .
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~-~ 744 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI-LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ-Q 744 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-c
Confidence 566777777666654333322 22467888776 68999999999999998632 234467778877765 5
Q ss_pred CChHHHHHHHHHHHHhCC
Q 027404 204 KDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 204 gd~eeA~~~ferAL~l~P 221 (224)
|+.++|..++++|+++..
T Consensus 745 G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 745 GRKSEAQRVLLEALKLAN 762 (903)
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 789999999999998764
No 224
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.63 E-value=0.02 Score=51.14 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=53.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 027404 162 KFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW 224 (224)
Q Consensus 162 ~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d~ 224 (224)
..+. ..+|.+.|.+.|.+|+++.|....-|+.+|... ...|+++.|...|++.++++|.|.
T Consensus 3 ~~~~-~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLA-ESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhc-ccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCcccc
Confidence 3344 479999999999999999999999999999754 557899999999999999999873
No 225
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.58 E-value=0.21 Score=43.81 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRG--------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~n-a~~l~nlA~~l~e~~G--------d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~ 202 (224)
...+..+|..+|++|.+..-.. ..+.++++.++. .| +..+|..+|.+|.... ++.+...+|.++..-
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 3458899999999998884444 345777777654 44 3447999999988876 778888888766432
Q ss_pred ---cCChHHHHHHHHHHHHhC
Q 027404 203 ---HKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 203 ---~gd~eeA~~~ferAL~l~ 220 (224)
..++++|..||++|-+..
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 247899999999988754
No 226
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=0.073 Score=51.90 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS--MYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~--~lG~ll~~~~gd~eeA~~ 211 (224)
.++++...+|++-|+..|.|..+|..||.+-. ..||.+.|...|+-||....-+..-+. .|-.+-.. .+.++.|..
T Consensus 451 ~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E~ekaR~ 528 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGEFEKARA 528 (677)
T ss_pred hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cchHHHHHH
Confidence 78999999999999999999999999998754 799999999999999977554433322 23222222 467999999
Q ss_pred HHHHHHHhCCC
Q 027404 212 YFDRAVHSAPD 222 (224)
Q Consensus 212 ~ferAL~l~P~ 222 (224)
+|++.|...+.
T Consensus 529 LYerlL~rt~h 539 (677)
T KOG1915|consen 529 LYERLLDRTQH 539 (677)
T ss_pred HHHHHHHhccc
Confidence 99999987653
No 227
>PLN03077 Protein ECB2; Provisional
Probab=95.56 E-value=0.1 Score=52.97 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~n--a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
+.+++|..+|+++.+..+-. ...+..+..++. +.|++++|++.+++. .+.|+ +.+|..+-..+ ..+++.+.|+.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac-~~~~~~e~~e~ 678 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNAC-RIHRHVELGEL 678 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH-HHcCChHHHHH
Confidence 45666666666666432222 244555555554 466666666666653 34443 34444333333 33566677777
Q ss_pred HHHHHHHhCCCC
Q 027404 212 YFDRAVHSAPDD 223 (224)
Q Consensus 212 ~ferAL~l~P~d 223 (224)
..+++++++|++
T Consensus 679 ~a~~l~~l~p~~ 690 (857)
T PLN03077 679 AAQHIFELDPNS 690 (857)
T ss_pred HHHHHHhhCCCC
Confidence 777777777764
No 228
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.56 E-value=0.035 Score=49.46 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHcCChHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV-LSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a-l~~lG~ll~~~~gd~eeA~~ 211 (224)
.++++.|.+.|...+++||.+-.++.|-|..++ .-|++.-|.+-+.+--..||+||-- ++.| +.+..-+.++|..
T Consensus 112 a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY---l~E~k~dP~~A~t 187 (297)
T COG4785 112 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY---LNEQKLDPKQAKT 187 (297)
T ss_pred cccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHH---HHHhhCCHHHHHH
Confidence 379999999999999999999999999998887 6899999999999999999999853 2222 3344456777766
Q ss_pred HH-HHHHHhCCCCC
Q 027404 212 YF-DRAVHSAPDDW 224 (224)
Q Consensus 212 ~f-erAL~l~P~d~ 224 (224)
.+ +|+..++-+.|
T Consensus 188 nL~qR~~~~d~e~W 201 (297)
T COG4785 188 NLKQRAEKSDKEQW 201 (297)
T ss_pred HHHHHHHhccHhhh
Confidence 44 46666654443
No 229
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.53 E-value=0.03 Score=32.83 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 190 ~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
++++.+|.++.. .|++++|+.+|++.++..|+.
T Consensus 1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence 467889988876 579999999999999999973
No 230
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.46 E-value=0.05 Score=54.06 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027404 134 KESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK 185 (224)
Q Consensus 134 ~d~e~A~~~yerALe~--dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld 185 (224)
+++++|...|+++.+. .| |..++..+..++. ..|++++|++.+..+++..
T Consensus 304 g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~-~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFS-RLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH-hccchHHHHHHHHHHHHhC
Confidence 7788888888888764 33 3345555444444 3566666666665555543
No 231
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.38 E-value=0.19 Score=53.12 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCChHH
Q 027404 134 KESESMDVYYQEMIKA----YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-PGDGNVLSMYGDLIWINHKDAPR 208 (224)
Q Consensus 134 ~d~e~A~~~yerALe~----dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld-P~da~al~~lG~ll~~~~gd~ee 208 (224)
+++++|.+.|+++.+. .|+ ..++..+-.++. ..|++++|++.|++..+.+ +.+...|..+-..+.. .|++++
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~~de 632 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGDWDF 632 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHH
Confidence 5667777777776652 343 344444444444 4666666666666666654 2244444444444433 455666
Q ss_pred HHHHHHHHHH
Q 027404 209 AKSYFDRAVH 218 (224)
Q Consensus 209 A~~~ferAL~ 218 (224)
|+.+|++..+
T Consensus 633 Al~lf~eM~~ 642 (1060)
T PLN03218 633 ALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 232
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.11 Score=47.48 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~ 190 (224)
.+++..|...|.+.++.||.++.+.+|-|.++. ..|+...|++..+.++.+.|.+..
T Consensus 265 ~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll-Ylg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILRMDPRNAVANNNKALCLL-YLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred ccchHHHHHHHhhccccCCCchhhhchHHHHHH-HHHHHHHHHHHHHHHhccCCccch
Confidence 378999999999999999999999999998876 799999999999999999998654
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.22 E-value=0.16 Score=45.57 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da---~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+..|++-|.... ..|++++|+.+|+++....|..+ .++..++.+++. .+++++|+.+.++-+++.|++
T Consensus 34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCC
Confidence 466777776665 58999999999999999988764 466677766665 578999999999999999975
No 234
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.20 E-value=0.27 Score=52.00 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHcCChH
Q 027404 134 KESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL----AKPGDGNVLSMYGDLIWINHKDAP 207 (224)
Q Consensus 134 ~d~e~A~~~yerALe~--dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~----ldP~da~al~~lG~ll~~~~gd~e 207 (224)
+++++|...|+++.+. .| |..+|..+-..+. ..|++++|.+.|++... +.|+ ...|..+-..+.. .|+++
T Consensus 521 G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k-~G~ld 596 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKP-DRVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN-AGQVD 596 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH-CCCHH
Confidence 7899999999999775 44 3567777777776 68999999999998876 3554 3455555555544 67899
Q ss_pred HHHHHHHHHHHhC
Q 027404 208 RAKSYFDRAVHSA 220 (224)
Q Consensus 208 eA~~~ferAL~l~ 220 (224)
+|.++|+++.+.+
T Consensus 597 eA~elf~~M~e~g 609 (1060)
T PLN03218 597 RAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999888754
No 235
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.12 E-value=0.086 Score=50.75 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHC--CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAY--PED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP------GDGNVLSMYGDLIWI 201 (224)
Q Consensus 134 ~d~e~A~~~yerALe~d--P~n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP------~da~al~~lG~ll~~ 201 (224)
++++.|+++|.+++.+. -.+ +...|.+|..|. ...++++|+.|+.|-+++.. ....+++.+|+.+-.
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 78999999999986442 222 456778888887 68899999999999887765 345678889988766
Q ss_pred HcCChHHHHHHHHHHHHh
Q 027404 202 NHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 202 ~~gd~eeA~~~ferAL~l 219 (224)
+ +..++|+.+.++++++
T Consensus 328 l-g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 328 L-GEHRKALYFAELHLRS 344 (639)
T ss_pred h-hhHHHHHHHHHHHHHH
Confidence 5 5689999999988875
No 236
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.05 E-value=0.22 Score=43.52 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~n--a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
+++.+|...+++..+.+|.. |+....+|+.+. .+|.++.|+..|+.|+..-|+. .+...|+..+.. +|+..+|.+
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~-qgr~~ea~a 214 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADAESAFEVAISYYPGP-QARIYYAEMLAK-QGRLREANA 214 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHH-hcchhHHHH
Confidence 68899999999999999874 678888899987 6999999999999999999865 555568877765 466666655
Q ss_pred HHH
Q 027404 212 YFD 214 (224)
Q Consensus 212 ~fe 214 (224)
.+.
T Consensus 215 q~~ 217 (251)
T COG4700 215 QYV 217 (251)
T ss_pred HHH
Confidence 443
No 237
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.17 Score=50.12 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCChH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY------GDLIWINHKDAP 207 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l------G~ll~~~~gd~e 207 (224)
++...+....+.+|.+||.++.++.|++.++......+..++...+.|....|++..++..+ +.++.. .++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 159 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGRTA 159 (620)
T ss_pred ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hccHH
Confidence 56678888999999999999999999999886444455667777777999999999987776 555433 46789
Q ss_pred HHHHHHHHHHHhCCCC
Q 027404 208 RAKSYFDRAVHSAPDD 223 (224)
Q Consensus 208 eA~~~ferAL~l~P~d 223 (224)
+|..+.++++.+.|.+
T Consensus 160 ~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 160 EAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999999998864
No 238
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.98 E-value=0.61 Score=39.10 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~ 201 (224)
++.+.++..++..--+.|+.+++-..-|+++. ..|++.+|+..|+.+.+..|..+.+-..++.+++.
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 47889999999888899999999999999887 79999999999999999999999888888887754
No 239
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.14 Score=47.69 Aligned_cols=81 Identities=9% Similarity=-0.115 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
.+++.|+++..--.+.+|.+-..+..+|.+++ ...++..|..||++.-...|........++.-++.. +.+.+|+...
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A-~i~ADALrV~ 101 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA-CIYADALRVA 101 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh-cccHHHHHHH
Confidence 57888999999999999999999999999988 688999999999999999999988877777777653 5678887765
Q ss_pred HHH
Q 027404 214 DRA 216 (224)
Q Consensus 214 erA 216 (224)
...
T Consensus 102 ~~~ 104 (459)
T KOG4340|consen 102 FLL 104 (459)
T ss_pred HHh
Confidence 443
No 240
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.80 E-value=0.62 Score=42.51 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--ChHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK--DAPRAKSY 212 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g--d~eeA~~~ 212 (224)
-.+..+..|++||+.||++..++..|=.... ..-+.++..+-+++++..+|++...|..|-........ .+.+....
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4567888999999999999988888777665 46688899999999999999999999876554322111 36778888
Q ss_pred HHHHHHh
Q 027404 213 FDRAVHS 219 (224)
Q Consensus 213 ferAL~l 219 (224)
|.++|+.
T Consensus 125 y~~~l~~ 131 (321)
T PF08424_consen 125 YEKCLRA 131 (321)
T ss_pred HHHHHHH
Confidence 8877763
No 241
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.093 Score=49.73 Aligned_cols=83 Identities=12% Similarity=-0.020 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
+..+++.|+..++-++..+-..- .+...+|.+++ ..|||++|+..|+-+...+.-++.++.+++.+.+.+ |.|.+|.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL-g~Y~eA~ 111 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL-GQYIEAK 111 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH-HHHHHHH
Confidence 44789999999999886554433 34444555566 589999999999999987777888999999887765 6799998
Q ss_pred HHHHHH
Q 027404 211 SYFDRA 216 (224)
Q Consensus 211 ~~ferA 216 (224)
...++|
T Consensus 112 ~~~~ka 117 (557)
T KOG3785|consen 112 SIAEKA 117 (557)
T ss_pred HHHhhC
Confidence 877665
No 242
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.74 E-value=0.038 Score=51.41 Aligned_cols=62 Identities=8% Similarity=0.012 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG 196 (224)
-+.+--..|.+++..+|.|+++|..-+.+-+...++++.|.+.|.++|+.+|..+..|..|-
T Consensus 122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 34444555666677777777666654444334566777777777777777777777665543
No 243
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.56 E-value=0.099 Score=31.99 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
+.++.++|.++.. .|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 3578899988876 58999999999999975
No 244
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.32 Score=44.34 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH-HHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP-RAKSY 212 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e-eA~~~ 212 (224)
..-.+|..+-+.+|.+||.|-.+|..--.++.+.+.++.+-+.|+...++-+|.+.++|...- ++..+.+++. .-+++
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchHHH
Confidence 455789999999999999999888876667776677899999999999999999999998765 4456667777 77888
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
.+.++..+..+
T Consensus 136 ~~~~l~~DaKN 146 (318)
T KOG0530|consen 136 TKLMLDDDAKN 146 (318)
T ss_pred HHHHHhccccc
Confidence 88888876654
No 245
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=0.3 Score=48.51 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHH---------------------------------HHHHHHHcCCHHHHHHH
Q 027404 131 DSGKESESMDVYYQEMIKAYPEDALVLANY---------------------------------AKFLKEIRGDFVKAEEY 177 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe~dP~na~~l~nl---------------------------------A~~l~e~~Gd~eeAe~~ 177 (224)
+..++|++|.....+.|...|++..+++-- |.+.| +.+..++|+.+
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y-rlnk~Dealk~ 101 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY-RLNKLDEALKT 101 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH-HcccHHHHHHH
Confidence 445788999998888888888887665522 22233 35556666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 178 CGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 178 ~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
++ -+++.+..++...|.+++.+ ++|++|...|+..++-+-++
T Consensus 102 ~~---~~~~~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 102 LK---GLDRLDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred Hh---cccccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCch
Confidence 66 35666666777777777764 68999999999887765443
No 246
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.33 E-value=0.16 Score=44.79 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG 196 (224)
+.++.|+..+-+||+++|.+-.++..-|.+| +.+..+++|++-|++.++.+|...++.-...
T Consensus 148 ~k~e~aI~dcsKaiel~pty~kAl~RRAeay-ek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 148 RKWESAIEDCSKAIELNPTYEKALERRAEAY-EKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhHHHHHHHHHhhHhcCchhHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 6789999999999999999998888888766 4789999999999999999999887765444
No 247
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=0.29 Score=42.51 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404 132 SGKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee 208 (224)
-++++++|+..++.++...-+. +.+-..+|+++. .+|.+++|+..+.....-+ -.+.+....|.++.. .|+-++
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~-kg~k~~ 177 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEES-WAAIVAELRGDILLA-KGDKQE 177 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-cCchHH
Confidence 3478999999999998764443 256667899888 5899999988665433221 123344457888765 578999
Q ss_pred HHHHHHHHHHhCCC
Q 027404 209 AKSYFDRAVHSAPD 222 (224)
Q Consensus 209 A~~~ferAL~l~P~ 222 (224)
|...|++|+..++.
T Consensus 178 Ar~ay~kAl~~~~s 191 (207)
T COG2976 178 ARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHccCC
Confidence 99999999988653
No 248
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.29 E-value=0.45 Score=46.61 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ 197 (224)
+.+-...|.+||..+|++|++|..-|...++..-+.+.|.+.|.++|+.+|+.+..|..|-.
T Consensus 121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 66777899999999999999999999888876666999999999999999999999876544
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=0.44 Score=43.15 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-HHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLA------NYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDG-NVLSMYGDLIWI 201 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~------nlA~~l~e~~Gd~eeAe~~~erAL~l-----dP~da-~al~~lG~ll~~ 201 (224)
+++++|..++++|++..-+|...++ ..+.++. ....+.+++.+|+||..+ .|+-+ .++-.-|.++ +
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l-e 122 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL-E 122 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-h
Confidence 7899999999999976555543332 3344443 577888999999999976 34332 2333344443 3
Q ss_pred HcCChHHHHHHHHHHHHhC
Q 027404 202 NHKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 202 ~~gd~eeA~~~ferAL~l~ 220 (224)
..+.++|+.+|++++.+-
T Consensus 123 -nv~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 123 -NVKPDDALQLYQRALAVV 140 (308)
T ss_pred -cCCHHHHHHHHHHHHHHH
Confidence 357999999999998763
No 250
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.23 E-value=0.23 Score=48.73 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027404 133 GKESESMDVYYQEMIK-----AYPEDALVLANYAKFLKEI---RG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH 203 (224)
Q Consensus 133 ~~d~e~A~~~yerALe-----~dP~na~~l~nlA~~l~e~---~G-d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~ 203 (224)
..|++.|..+|+.|.+ ..-.++.+.+.+|.++.+. .. |.+.|..+|.+|.+... +++.+.+|.++..-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCC
Confidence 3689999999999977 1222566788888877631 12 67889999998888754 444556776664433
Q ss_pred --CChHHHHHHHHHHHH
Q 027404 204 --KDAPRAKSYFDRAVH 218 (224)
Q Consensus 204 --gd~eeA~~~ferAL~ 218 (224)
+++..|..||..|.+
T Consensus 340 ~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAK 356 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 356788888888764
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.22 E-value=0.14 Score=48.58 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHHCCC--CH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPE--DA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----------DGNVLSMYGD 197 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~--na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~----------da~al~~lG~ 197 (224)
..++++.++|++|+.+.-+ |+ .++..++.++- +..|+++|.-+..+|.++-.+ .+.+++.++.
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 4789999999999987444 33 57778898876 689999999999999987443 2345667776
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC
Q 027404 198 LIWINHKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 198 ll~~~~gd~eeA~~~ferAL~l~ 220 (224)
.+. +.|+.-+|.++.+.|.++.
T Consensus 215 alR-~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 215 ALR-LLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHH-HhcccccHHHHHHHHHHHH
Confidence 654 4678999999999998763
No 252
>PRK10941 hypothetical protein; Provisional
Probab=94.17 E-value=0.24 Score=44.54 Aligned_cols=59 Identities=14% Similarity=-0.054 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS 193 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~ 193 (224)
+++++|..+.++.+..+|+++.-+..-|.++. ..|.+..|..-|+.-|+..|+++.+-.
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 89999999999999999999999999998877 699999999999999999999998864
No 253
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=0.46 Score=47.26 Aligned_cols=81 Identities=10% Similarity=-0.009 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-------------------------- 187 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~-------------------------- 187 (224)
+..++|...+. -.|+.+..++...|.++| +.++|++|...|+..++-+-+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 46677777777 567777888889999999 799999999999988653332
Q ss_pred -----CHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 188 -----DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 188 -----da~al~~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
..+.++|.+.++.. .++|.+|++.++.|+++
T Consensus 169 ~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRI 204 (652)
T ss_pred CCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Confidence 23344555555544 47899999999999654
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.11 E-value=0.65 Score=45.47 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC-----
Q 027404 134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILA-KPGDGNVLSMYGDLIWINHKD----- 205 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~--na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-dP~da~al~~lG~ll~~~~gd----- 205 (224)
|+.++|++.|+..++.+|. +..++.|+-.++.+ .+.+.++...+.|==++ -|.-+...+.-+.+....-+|
T Consensus 273 Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e 351 (539)
T PF04184_consen 273 GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE 351 (539)
T ss_pred CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch
Confidence 8999999999999998887 45689999998874 89999999988874322 244555544433222111111
Q ss_pred ----------hHHHHHHHHHHHHhCCC
Q 027404 206 ----------APRAKSYFDRAVHSAPD 222 (224)
Q Consensus 206 ----------~eeA~~~ferAL~l~P~ 222 (224)
-..|++.++||++.||.
T Consensus 352 ~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 352 AASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 13577899999999995
No 255
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.03 E-value=0.17 Score=29.10 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKF 163 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~ 163 (224)
+++.|...|++++...|.++.+|..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45566666666666666666666666544
No 256
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.99 E-value=0.29 Score=49.24 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-HHc-CChH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIW-INH-KDAP 207 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld--P~da~al~~lG~ll~-~~~-gd~e 207 (224)
+.|=++.....|.+.|.+----|....|||.+|. .+.-+++|-+.|+|-|.+- |+-.++|..|-.... ..+ ...+
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 3367888999999999999999999999999986 5788999999999999875 455667776544332 223 3589
Q ss_pred HHHHHHHHHHHhCCC
Q 027404 208 RAKSYFDRAVHSAPD 222 (224)
Q Consensus 208 eA~~~ferAL~l~P~ 222 (224)
.|..+|++||+..|-
T Consensus 568 raRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 568 RARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHHHhcCCH
Confidence 999999999998773
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.98 E-value=0.29 Score=46.19 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCChHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA-KPGD---GNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-dP~d---a~al~~lG~ll~~~~gd~eeA 209 (224)
|++-+|...+++.|+-.|.|-.++..-=.++. ..|+.+.-...++|.|-. +|+- ..+.-.|+-.+.+ .|-|++|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhH
Confidence 57778888999999999999877766555555 579999999999999977 6665 3344456655555 5789999
Q ss_pred HHHHHHHHHhCCCC
Q 027404 210 KSYFDRAVHSAPDD 223 (224)
Q Consensus 210 ~~~ferAL~l~P~d 223 (224)
++.-++|+++||.|
T Consensus 195 Ek~A~ralqiN~~D 208 (491)
T KOG2610|consen 195 EKQADRALQINRFD 208 (491)
T ss_pred HHHHHhhccCCCcc
Confidence 99999999999976
No 258
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.92 E-value=1.1 Score=38.97 Aligned_cols=84 Identities=21% Similarity=0.179 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHH----CCCC---HHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCCC------CHHHHH
Q 027404 134 KESESMDVYYQEMIKA----YPED---ALVLANYAKFLKEIRGDFV-------KAEEYCGRAILAKPG------DGNVLS 193 (224)
Q Consensus 134 ~d~e~A~~~yerALe~----dP~n---a~~l~nlA~~l~e~~Gd~e-------eAe~~~erAL~ldP~------da~al~ 193 (224)
-.++.|++.|.-||-. ...+ +.++..+|+++. .+++.+ +|..+|++|+..... ...+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4788999988888743 3233 467778899876 477744 677777777765432 245677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 194 MYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 194 ~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
.+|.+... .|++++|..+|.+.+..
T Consensus 170 LigeL~rr-lg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRR-LGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence 78876654 58999999999999864
No 259
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.86 E-value=0.28 Score=46.56 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------hCCCCHHHH---------
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL------------AKPGDGNVL--------- 192 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~------------ldP~da~al--------- 192 (224)
+++++|...|.-+.+.+--+++++.|+|.+.. ..|.|.+|...-.+|-+ ..-+|..-|
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD 149 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD 149 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 58899999999999988888999999998776 68999999886555421 011111111
Q ss_pred -----HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 193 -----SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 193 -----~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
..++.+.+.+ -.|++|+..|++.+.-+|++
T Consensus 150 ~~EdqLSLAsvhYmR-~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMR-MHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred hHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhcChhh
Confidence 1223333333 35999999999999988874
No 260
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.72 E-value=0.54 Score=38.83 Aligned_cols=84 Identities=13% Similarity=0.021 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-hCCCCHH-HHHHHHHHHHHHcCChHHHHHHHH
Q 027404 139 MDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAIL-AKPGDGN-VLSMYGDLIWINHKDAPRAKSYFD 214 (224)
Q Consensus 139 A~~~yerALe~dP~na~~l~nlA~~l~e--~~Gd~eeAe~~~erAL~-ldP~da~-al~~lG~ll~~~~gd~eeA~~~fe 214 (224)
..+-+++.-...--.....++||+++.. ...|..+.+.+++..++ ..|.... .+++++..++.. ++|++|+.|.+
T Consensus 17 ~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRl-keY~~s~~yvd 95 (149)
T KOG3364|consen 17 GQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRL-KEYSKSLRYVD 95 (149)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHH-hhHHHHHHHHH
Confidence 3333333333332335777888887752 12355578888888885 5565433 334455445443 56888888888
Q ss_pred HHHHhCCCC
Q 027404 215 RAVHSAPDD 223 (224)
Q Consensus 215 rAL~l~P~d 223 (224)
..++..|++
T Consensus 96 ~ll~~e~~n 104 (149)
T KOG3364|consen 96 ALLETEPNN 104 (149)
T ss_pred HHHhhCCCc
Confidence 888888875
No 261
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.63 E-value=0.8 Score=40.12 Aligned_cols=85 Identities=18% Similarity=0.118 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH----cC
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI---RGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWIN----HK 204 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~---~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~----~g 204 (224)
..+..+|..+|+ ...+..++.+.++||.++..- ..|+.+|..+|++|....-.. ..+...++..+..- .-
T Consensus 90 ~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 356899999999 556678899999999887631 238999999999999885444 23366676655331 01
Q ss_pred --ChHHHHHHHHHHHHh
Q 027404 205 --DAPRAKSYFDRAVHS 219 (224)
Q Consensus 205 --d~eeA~~~ferAL~l 219 (224)
+...|..+|++|-..
T Consensus 168 ~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 168 AYDDKKALYLYRKAAEL 184 (292)
T ss_pred cHHHHhHHHHHHHHHHh
Confidence 334788888887654
No 262
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.58 E-value=1.4 Score=35.84 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHH-
Q 027404 134 KESESMDVYYQEMIKAYPE------------DALVLANYAKFLKEIRGDFVKAEEYCGRAI-------LAKPGDGNVLS- 193 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~------------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL-------~ldP~da~al~- 193 (224)
+.|++|...|++|++..-. |+.++..|+.++. ..|+|++++...++|| +++.+....|.
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 5789999999999987332 3567778888887 6899987655555555 67877777664
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 194 ---MYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 194 ---~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
+.+..+ +-.|+.++|+..|+.|.++
T Consensus 102 aVfsra~Al-~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVAL-EGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHH-HHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhcCChHHHHHHHHHHHHH
Confidence 223333 3358999999999998753
No 263
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.077 Score=47.64 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=49.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~ 222 (224)
...+|..|+.+|.|||.++|..+..+.+-+.+++. ..+++.+.+-.++|++++|+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChH
Confidence 35678899999999999999999999999888877 46899999999999999997
No 264
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.17 E-value=0.66 Score=50.21 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=76.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH
Q 027404 130 GDSGKESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP 207 (224)
Q Consensus 130 ~~~~~d~e~A~~~yerALe~dP~--na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e 207 (224)
+..+.+-++|...+.+||+.-|. |.++....|.+-+ ..||.+++...|+-.+...|.--++|.-|...-. .+++.+
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei-k~~~~~ 1651 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI-KHGDIK 1651 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH-ccCCHH
Confidence 33445668899999999999999 8899999998887 6999999999999999999999999998877543 357789
Q ss_pred HHHHHHHHHHHhC
Q 027404 208 RAKSYFDRAVHSA 220 (224)
Q Consensus 208 eA~~~ferAL~l~ 220 (224)
.+...|+|++.+.
T Consensus 1652 ~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1652 YVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998763
No 265
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.12 E-value=1 Score=40.25 Aligned_cols=61 Identities=25% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY 195 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l 195 (224)
+.+.+|+...+.-++.+|.|+.....|-.+++ ..|++++|...++-+-.+.|++-.-...|
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~ly 75 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLY 75 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHH
Confidence 57889999999999999999999999999888 79999999999999999999885543333
No 266
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=0.27 Score=45.79 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=45.2
Q ss_pred HHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404 147 IKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA 216 (224)
Q Consensus 147 Le~dP--~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferA 216 (224)
++.-| +++.+..|.|.+++ ..|++++|++-|+.|++..--.+-+.++++.+.+. .++++.|+.+....
T Consensus 135 veQlp~en~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEI 204 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEI 204 (459)
T ss_pred HHhccCCCccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 44445 56677777777776 47777777777777777776666666666666654 45677777655433
No 267
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.98 E-value=1 Score=33.60 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHH----CCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 027404 134 KESESMDVYYQEMIKA----YPED-----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190 (224)
Q Consensus 134 ~d~e~A~~~yerALe~----dP~n-----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~ 190 (224)
+++.+|.+.+.+.+.. +... ..++.++|.+.. ..|++++|+..++.||++.....+
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHCC
Confidence 4566665555554433 2211 345555666554 466666777777666666655433
No 268
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.74 E-value=0.4 Score=30.25 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEY--CGRAILAKPGD 188 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~--~erAL~ldP~d 188 (224)
+.++.+|..++ .+|++++|+.+ |+-+..++|.|
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence 45666666665 47777777777 44666666653
No 269
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.73 E-value=0.51 Score=38.95 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHHH-HCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 027404 131 DSGKESESMDVYYQEMIK-AYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM 194 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe-~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~ 194 (224)
....+..+.+.+++..++ .+|..- +.++.+|..++ +.++|++|++|.+..++..|++.++...
T Consensus 46 ~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 46 RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 445688899999999997 566543 77778887777 7999999999999999999999998753
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.70 E-value=0.98 Score=44.33 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCChHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAPRA 209 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~--Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~eeA 209 (224)
+.+.|..+|.+|-+.. ++.+.+.+|.++..-. .|+.+|.+||.+|.+. .+..++..++.++..- ..+...|
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 8899999999998875 4566777776654322 3577999999999876 5778888888766431 2478999
Q ss_pred HHHHHHHHHhC
Q 027404 210 KSYFDRAVHSA 220 (224)
Q Consensus 210 ~~~ferAL~l~ 220 (224)
..||++|.+..
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 99999998876
No 271
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.49 E-value=0.4 Score=27.46 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404 169 GDFVKAEEYCGRAILAKPGDGNVLSMYGDL 198 (224)
Q Consensus 169 Gd~eeAe~~~erAL~ldP~da~al~~lG~l 198 (224)
|+.+.|...|++++...|.+..+|..|..+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567899999999999999999999887654
No 272
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=0.84 Score=41.58 Aligned_cols=89 Identities=11% Similarity=-0.045 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE-IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e-~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
..++-|+...+++.++|-+.......-|++-.. -...+..|.-+|+..-+.-|-.+..+...+.+... .+++++|+..
T Consensus 151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeAe~l 229 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHHHHH
Confidence 577888999999988876654332222322211 12367789999998888566677777777777655 5799999999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
++.|+..+++|
T Consensus 230 L~eaL~kd~~d 240 (299)
T KOG3081|consen 230 LEEALDKDAKD 240 (299)
T ss_pred HHHHHhccCCC
Confidence 99999998876
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.38 E-value=1.4 Score=39.12 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------
Q 027404 134 KESESMDVYYQEMIKAYP----EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---------------------- 187 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP----~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---------------------- 187 (224)
|.++.|..++.++...++ ..+.+.+.+|.++. .+|+..+|+..++..+.....
T Consensus 160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI 238 (352)
T ss_pred CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence 678889999999888652 25788888899988 589999999999888871111
Q ss_pred ------------CHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCC
Q 027404 188 ------------DGNVLSMYGDLIWIN-----HKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 188 ------------da~al~~lG~ll~~~-----~gd~eeA~~~ferAL~l~P~d 223 (224)
-+.++..+|..+... ...+++++.+|+.|++++|+.
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 122444555544332 256888999999999998853
No 274
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.18 E-value=0.78 Score=41.29 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHH----C-CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKA----Y-PED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN------VLSMYGDLIWI 201 (224)
Q Consensus 134 ~d~e~A~~~yerALe~----d-P~n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~------al~~lG~ll~~ 201 (224)
+++..|-..|.+|-+. + -+| +..+...+.++ +..+.++|+.|+++||++--+-.. .+..+|.++-.
T Consensus 48 K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy--kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs 125 (288)
T KOG1586|consen 48 KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY--KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES 125 (288)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh--hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Confidence 4455555555555432 1 112 23444445544 367999999999999987443222 22345555433
Q ss_pred HcCChHHHHHHHHHHHH
Q 027404 202 NHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 202 ~~gd~eeA~~~ferAL~ 218 (224)
-..++++|+.+|++|-.
T Consensus 126 dl~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 126 DLQDFEKAIAHYEQAAE 142 (288)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 22578888888888754
No 275
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.13 E-value=1.6 Score=32.56 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 027404 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~ 220 (224)
..++.+++.+... .|++++|+..++.|+++.
T Consensus 41 ~~all~lA~~~~~-~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 41 AYALLNLAELHRR-FGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 4566778877655 588999999999999874
No 276
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.00 E-value=0.4 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 191 al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
.++.+|..++. .++|++|..+.+++++++|++
T Consensus 3 ~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYK-LGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCc
Confidence 45566766665 579999999999999999986
No 277
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.83 E-value=1.2 Score=40.22 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-H-----HHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-V-----LSMYGDLIWI 201 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~-a-----l~~lG~ll~~ 201 (224)
.+.++|..++++||++--+-. ..+..+|.++.....++++|+.+|++|-+--..+-. . +.-.+. |..
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~-yaa 165 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ-YAA 165 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH-HHH
Confidence 466777888888888755433 233367776654447899999999999875443322 1 111222 222
Q ss_pred HcCChHHHHHHHHHHHHhCC
Q 027404 202 NHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 202 ~~gd~eeA~~~ferAL~l~P 221 (224)
+.++|.+|+..|++..+..-
T Consensus 166 ~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33679999999998876543
No 278
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.76 E-value=0.67 Score=40.72 Aligned_cols=48 Identities=29% Similarity=0.266 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 136 SESMDVYYQEMIK-----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 136 ~e~A~~~yerALe-----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
.+.|..+|++|++ +.|.|| .+..|++.|+++..++.++|.+..++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4689999999986 488888 45668999999999999999998888875
No 279
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.32 E-value=2.3 Score=39.70 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=55.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----CC------------CCHH---HHHHHHH
Q 027404 147 IKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL---------A-----KP------------GDGN---VLSMYGD 197 (224)
Q Consensus 147 Le~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~---------l-----dP------------~da~---al~~lG~ 197 (224)
|+.+|-|.+++..++.++. .+||++.|..+++|||= - ++ .|.. +++.+..
T Consensus 33 l~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 4678889999999999987 69999999999999872 1 11 1222 2222322
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-C
Q 027404 198 LIWINHKDAPRAKSYFDRAVHSAPD-D 223 (224)
Q Consensus 198 ll~~~~gd~eeA~~~ferAL~l~P~-d 223 (224)
.+ .++|.+..|.++.+-.+.+||. |
T Consensus 112 ~L-~~RG~~rTAlE~~KlLlsLdp~~D 137 (360)
T PF04910_consen 112 SL-GRRGCWRTALEWCKLLLSLDPDED 137 (360)
T ss_pred HH-HhcCcHHHHHHHHHHHHhcCCCCC
Confidence 33 3468999999999999999998 5
No 280
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.08 E-value=0.23 Score=46.36 Aligned_cols=81 Identities=6% Similarity=0.135 Sum_probs=67.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 142 ~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P 221 (224)
.|.++--..|+|+..|..|+.+.. ..+-+.+--..|-+++..+|.+++.|..-...-+...++++.|.+.|.+++++||
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 566777778999999999997665 6788999999999999999999999875333333446789999999999999999
Q ss_pred CC
Q 027404 222 DD 223 (224)
Q Consensus 222 ~d 223 (224)
+.
T Consensus 174 ~~ 175 (435)
T COG5191 174 RS 175 (435)
T ss_pred CC
Confidence 75
No 281
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.07 E-value=1.3 Score=46.13 Aligned_cols=84 Identities=24% Similarity=0.389 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHH----------HHHCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------
Q 027404 134 KESESMDVYYQEM----------IKAYPE----------DALVLANYAKFLKEIRGDFVKAEEYCGRAIL---------- 183 (224)
Q Consensus 134 ~d~e~A~~~yerA----------Le~dP~----------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~---------- 183 (224)
++.+.|++||+++ |.-+|. ++.+|...|.++ +..|+.+.|+.+|..|-+
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAKDYFSMVRIKCI 950 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhhhhhhheeeEee
Confidence 6789999999975 444554 445666677766 479999999999987743
Q ss_pred -----------hCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 184 -----------AKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 184 -----------ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
-...|..+-+.+|+.| +..|++.+|+.+|.+|-..
T Consensus 951 qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred ccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence 2335666677788765 4568899999999987653
No 282
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.65 E-value=0.33 Score=27.93 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCG 179 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~e 179 (224)
.+++++|.++. .+||+++|+..++
T Consensus 2 ~a~~~la~~~~-~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALL-AQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHh
Confidence 34566666665 4666666666654
No 283
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.62 E-value=0.14 Score=47.94 Aligned_cols=79 Identities=19% Similarity=0.136 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe 214 (224)
..+.+++.+++|-+..-. -..++ ..|.+++|++.|.+||.++|..+..+...+.+++.+ ++...|+.-+.
T Consensus 103 ~~e~Tee~~eqa~e~k~~-------A~eAl--n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl-~kp~~airD~d 172 (377)
T KOG1308|consen 103 NAEITEEMMDQANDKKVQ-------ASEAL--NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKL-KKPNAAIRDCD 172 (377)
T ss_pred hhhhhHHHHHHHHHHHHH-------HHHHh--cCcchhhhhcccccccccCCchhhhcccccceeeec-cCCchhhhhhh
Confidence 445667777777533322 22233 479999999999999999999999999999988775 46899999999
Q ss_pred HHHHhCCCC
Q 027404 215 RAVHSAPDD 223 (224)
Q Consensus 215 rAL~l~P~d 223 (224)
.|+.++|+.
T Consensus 173 ~A~ein~Ds 181 (377)
T KOG1308|consen 173 FAIEINPDS 181 (377)
T ss_pred hhhccCccc
Confidence 999999973
No 284
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.61 E-value=1 Score=40.02 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHH-----HCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 136 SESMDVYYQEMIK-----AYPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 136 ~e~A~~~yerALe-----~dP~na~---~l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
.+.|..+|++|++ +.|.||. +..|++.|+++..++.++|.+..++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5689999999986 4588884 5678999999999999999987777774
No 285
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.52 E-value=1.2 Score=40.28 Aligned_cols=56 Identities=18% Similarity=0.026 Sum_probs=49.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+.++++.|..+.++.+.++|+++.-+..-|.+|.+ .+.+.-|++-++..++.-|++
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCc
Confidence 57899999999999999999999888888887765 578899999999999999986
No 286
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.38 E-value=1 Score=42.91 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPE----------DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG------DGNVLSMYGD 197 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~----------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~------da~al~~lG~ 197 (224)
.|+++|.-+..+|+++--. ...+++.++.++. .+|++..|.+|++.|.++.-. ++.-+.-+|.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7899999999999886322 1367778888886 699999999999999887432 3444556788
Q ss_pred HHHHHcCChHHHHHHHHHHHHh
Q 027404 198 LIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 198 ll~~~~gd~eeA~~~ferAL~l 219 (224)
+|.. .++.+.|-.-|++|+..
T Consensus 255 IyR~-~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 255 IYRS-RGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHh-cccHhHHHHHHHHHHHH
Confidence 7754 68999999999999864
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.38 E-value=3 Score=37.01 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHHC----CCCH----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 027404 133 GKESESMDVYYQEMIKAY----PEDA----LVLANYAKFLKEIRG-DFVKAEEYCGRAILA 184 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~d----P~na----~~l~nlA~~l~e~~G-d~eeAe~~~erAL~l 184 (224)
+++++.|..+|.|+-... |+.. .++++.|.-++ ..+ +++.|..++++|+++
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH
Confidence 478899999999986654 3332 56777777776 477 999999999999887
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.16 E-value=2.8 Score=41.71 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=75.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
+...+.+.+...|...|..-|..-..|..||..-+ +.|..+++++.|+|++..-|-..+.|..|-.++....++.+.=.
T Consensus 56 ~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr 134 (577)
T KOG1258|consen 56 DSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLR 134 (577)
T ss_pred CchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHH
Confidence 34456688999999999999999999999998877 68999999999999999999888888888777666667777777
Q ss_pred HHHHHHHHhCC
Q 027404 211 SYFDRAVHSAP 221 (224)
Q Consensus 211 ~~ferAL~l~P 221 (224)
..|++|+...-
T Consensus 135 ~~fe~A~~~vG 145 (577)
T KOG1258|consen 135 DLFERAKSYVG 145 (577)
T ss_pred HHHHHHHHhcc
Confidence 78888877543
No 289
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.98 E-value=1 Score=44.73 Aligned_cols=86 Identities=10% Similarity=-0.068 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404 137 ESMDVYYQEMIKAYPEDALVLANY--AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (224)
Q Consensus 137 e~A~~~yerALe~dP~na~~l~nl--A~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe 214 (224)
..|+.++..-+..+|.++.++..+ ...+. ..++...|...+..++.++|+++.+..+++..+...+..+.-++.+.+
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLA-PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhcc-ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 447777888888999999875543 55444 578888999999999999999999999999887665555666667777
Q ss_pred HHHHhCCCC
Q 027404 215 RAVHSAPDD 223 (224)
Q Consensus 215 rAL~l~P~d 223 (224)
.|....|++
T Consensus 127 ~a~~~~~~~ 135 (620)
T COG3914 127 IAEWLSPDN 135 (620)
T ss_pred HHHhcCcch
Confidence 788888865
No 290
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.64 E-value=2.4 Score=36.82 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 027404 136 SESMDVYYQEMIKAYPE--D----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-NVLSMYGDLIWI 201 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~--n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da-~al~~lG~ll~~ 201 (224)
+..|...|++|++.... . ..+++.+|.+.+ +.|++++|.++|.++|...-... ..+..+|.=+|+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 45788888888876543 2 367777888776 79999999999999996533322 355556655443
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.54 E-value=6.3 Score=32.89 Aligned_cols=67 Identities=7% Similarity=-0.027 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~ 201 (224)
.+++.++..+...=-+-|+.+++...-|+++. ..|++.+|+..|+......+..+.+-..++.+++.
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 57788888888888889999999999998887 79999999999999999998888777777777654
No 292
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.52 E-value=2.6 Score=36.67 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCChHHHHH
Q 027404 137 ESMDVYYQEMIKA-YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----DGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 137 e~A~~~yerALe~-dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~----da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
+.|...|.++-.. .-++++..+.+|.++. .-|.++|+++|.+|+++.+. |++++..++.++.. .++++.|--
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhhh
Confidence 5666666655322 3357899999998764 68999999999999988554 48889899988765 567887753
No 293
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=89.32 E-value=2.1 Score=37.42 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404 129 DGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE----IRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199 (224)
Q Consensus 129 ~~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e----~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll 199 (224)
.++..++...|+++|..|.. .+.+.+..+++.++.. +.+ +.++|++|+.||.+++ +..+-++|...+
T Consensus 82 KgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 82 KGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMY 154 (248)
T ss_pred cCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHH
Confidence 34566789999999998877 5678888888866542 112 3679999999999774 666666665433
No 294
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=1.8 Score=39.57 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
.+|.++..||+..|.. ...-.+|.+.-+-+|.++|.+..+|...-.++.+++.+..+-..|+
T Consensus 40 e~fr~~m~YfRAI~~~------------------~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAK------------------NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred hhHHHHHHHHHHHHhc------------------cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5777777777655443 3345578888888999999999999887777777777888999999
Q ss_pred HHHHHhCCCCC
Q 027404 214 DRAVHSAPDDW 224 (224)
Q Consensus 214 erAL~l~P~d~ 224 (224)
...+.-+|.++
T Consensus 102 ~eI~e~npKNY 112 (318)
T KOG0530|consen 102 DEIIEDNPKNY 112 (318)
T ss_pred HHHHHhCccch
Confidence 99999999875
No 295
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=1.9 Score=40.44 Aligned_cols=67 Identities=10% Similarity=-0.032 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV----LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a----l~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
+-+-.-|+.++ ...+|..|+.+|...|+..-.|+.+ |.|.+.+.+.+ ++|..|+.-..+|+.++|.+
T Consensus 82 en~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 82 ENYKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcch
Confidence 34445588887 6899999999999999987766553 55666666554 67999999999999999976
No 296
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.43 E-value=0.54 Score=47.09 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHcCChHHHHHHHH
Q 027404 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN--VLSMYGDLIWINHKDAPRAKSYFD 214 (224)
Q Consensus 137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~--al~~lG~ll~~~~gd~eeA~~~fe 214 (224)
+..-...-.+++.+|.+...+ ++|.+|+..+|+.-+|..|+.+|+-..|.+.. ++..+|.++.. .|...+|.-++.
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILh 273 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILH 273 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheee
Confidence 344456667777777765444 44445555788888888888888877776543 56667777654 466677776666
Q ss_pred HHHHhCC
Q 027404 215 RAVHSAP 221 (224)
Q Consensus 215 rAL~l~P 221 (224)
.|+.-.|
T Consensus 274 AA~~dA~ 280 (886)
T KOG4507|consen 274 AALDDAD 280 (886)
T ss_pred hhccCCc
Confidence 6665444
No 297
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.36 E-value=3.7 Score=39.59 Aligned_cols=82 Identities=18% Similarity=0.059 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
|+++.|.+-|+.++. ||.-- .-+..|=.- .++.|+.+.|.+|.++|-...|.-+.++...-...+. .||.+.|+.+
T Consensus 134 G~~~~Ar~kfeAMl~-dPEtRllGLRgLyle-Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~AlkL 210 (531)
T COG3898 134 GDYEDARKKFEAMLD-DPETRLLGLRGLYLE-AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALKL 210 (531)
T ss_pred CchHHHHHHHHHHhc-ChHHHHHhHHHHHHH-HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHHH
Confidence 789999999988864 33222 122222111 2368999999999999999999998876643333444 5899999999
Q ss_pred HHHHHH
Q 027404 213 FDRAVH 218 (224)
Q Consensus 213 ferAL~ 218 (224)
.+....
T Consensus 211 vd~~~~ 216 (531)
T COG3898 211 VDAQRA 216 (531)
T ss_pred HHHHHH
Confidence 886553
No 298
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=88.20 E-value=0.69 Score=44.83 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL 198 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l 198 (224)
+++..|+.-+.+||+.+|....+++.-|.+.. ..+++.+|..-|++...+.|+++.+...+..+
T Consensus 52 e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 52 ESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred chhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 68889999999999999999998888887766 68999999999999999999999997766543
No 299
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=87.26 E-value=3.3 Score=41.19 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=60.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 144 QEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 144 erALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
++-|+.||.|.+.|+.+-.-+. ..-++++...|++.+..-|..+.+|..|..-.+. .++|+.-+..|.|.|.
T Consensus 10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence 7889999999999999877553 4589999999999999999999999887766544 4689999999988875
No 300
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=4.6 Score=38.66 Aligned_cols=89 Identities=9% Similarity=0.122 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---hHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD---APRA 209 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd---~eeA 209 (224)
-+++-+.+.+.||+.||....+|+-..+++. ... ++..-++.+++++++||.+-.+|.+--.++-..... ..+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~-~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQ-KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 4566778899999999999999999999886 344 467999999999999999888876443333222222 4566
Q ss_pred HHHHHHHHHhCCCCC
Q 027404 210 KSYFDRAVHSAPDDW 224 (224)
Q Consensus 210 ~~~ferAL~l~P~d~ 224 (224)
+++..++|.-++.||
T Consensus 169 l~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNY 183 (421)
T ss_pred HHHHHHHHhccchhh
Confidence 778888888777653
No 301
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.98 E-value=2.6 Score=41.58 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHH-----H----CC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404 134 KESESMDVYYQEMIK-----A----YP---------EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY 195 (224)
Q Consensus 134 ~d~e~A~~~yerALe-----~----dP---------~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l 195 (224)
+.|..+..+|++||+ + .| ..-+++||.|..+. ..|+...|.+||.+|+.+--.+|..|..+
T Consensus 297 ~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPrlWLRl 375 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPRLWLRL 375 (696)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 578999999999996 1 11 12489999998876 69999999999999999988999999999
Q ss_pred HHHHHH
Q 027404 196 GDLIWI 201 (224)
Q Consensus 196 G~ll~~ 201 (224)
+.+...
T Consensus 376 AEcCim 381 (696)
T KOG2471|consen 376 AECCIM 381 (696)
T ss_pred HHHHHH
Confidence 986543
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.88 E-value=4.3 Score=36.96 Aligned_cols=80 Identities=13% Similarity=0.002 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe 214 (224)
.+..=....+++++. ....++..++..+. ..++++.+++.+++.|..+|.+-.+|..+=.+++. .|+...|+..|+
T Consensus 136 ~f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~ 211 (280)
T COG3629 136 RFDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYR 211 (280)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHH
Confidence 355555555555554 34567777887776 68999999999999999999998888766555554 688999999999
Q ss_pred HHHH
Q 027404 215 RAVH 218 (224)
Q Consensus 215 rAL~ 218 (224)
+.-+
T Consensus 212 ~l~~ 215 (280)
T COG3629 212 QLKK 215 (280)
T ss_pred HHHH
Confidence 8765
No 303
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=86.52 E-value=3.9 Score=41.49 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP--GDGNVLSMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP--~da~al~~lG~ll~~~~gd~eeA~~~ 212 (224)
-|+.--.+|++++-.=-.-|.+|..|..++. .+++...-...|.+||..-| .|..+|-.|-.++ ..++-.+-++..
T Consensus 83 ~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv-~~~~lPets~rv 160 (835)
T KOG2047|consen 83 AYESVNNCFERCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFV-ESHGLPETSIRV 160 (835)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHH-HhCCChHHHHHH
Confidence 4666677888888876677889999999887 69999999999999998888 5777787765554 446667889999
Q ss_pred HHHHHHhCCCC
Q 027404 213 FDRAVHSAPDD 223 (224)
Q Consensus 213 ferAL~l~P~d 223 (224)
|+|-|+++|..
T Consensus 161 yrRYLk~~P~~ 171 (835)
T KOG2047|consen 161 YRRYLKVAPEA 171 (835)
T ss_pred HHHHHhcCHHH
Confidence 99999998853
No 304
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.95 E-value=2.9 Score=26.29 Aligned_cols=33 Identities=6% Similarity=-0.048 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHH--HHHHHHhCCCC
Q 027404 190 NVLSMYGDLIWINHKDAPRAKSY--FDRAVHSAPDD 223 (224)
Q Consensus 190 ~al~~lG~ll~~~~gd~eeA~~~--ferAL~l~P~d 223 (224)
+.+..+|..+.. .|++++|+.+ |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence 345667766654 6899999999 65888888875
No 305
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.94 E-value=2.6 Score=41.16 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=43.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404 163 FLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 163 ~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fer 215 (224)
+++ .+|+|.++.-|-.=..+++| .+.++..+|.+++.. ++|+||-.++..
T Consensus 471 yLy-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~-k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 471 YLY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMEN-KRYQEAWEYLQK 520 (549)
T ss_pred HHH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH-hhHHHHHHHHHh
Confidence 355 58999999999999999999 889999999998774 689999999864
No 306
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.89 E-value=7.2 Score=38.86 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCChHHHH
Q 027404 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~~gd~eeA~ 210 (224)
..|+++.....|++++---....++|..|+..+. ..|+..-|...+.+|.++.-.. +.....++ .+....|++..|.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a-~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEA-RFEESNGNFDDAK 386 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHH-HHHHhhccHHHHH
Confidence 3489999999999999999999999999999876 6899999999999998875444 44444444 4556678999999
Q ss_pred HHHHHHHHhCCC
Q 027404 211 SYFDRAVHSAPD 222 (224)
Q Consensus 211 ~~ferAL~l~P~ 222 (224)
..+++...--|+
T Consensus 387 ~~lq~i~~e~pg 398 (577)
T KOG1258|consen 387 VILQRIESEYPG 398 (577)
T ss_pred HHHHHHHhhCCc
Confidence 999988765554
No 307
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.65 E-value=4 Score=34.04 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG 187 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~ 187 (224)
...+..+++.++.++..| ++.++.+++.++. .+|+.++|.+..+++..+=|.
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCc
Confidence 456677788888888888 6888888888876 689999999999999999883
No 308
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.91 E-value=1.2 Score=25.50 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404 190 NVLSMYGDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 190 ~al~~lG~ll~~~~gd~eeA~~~fer 215 (224)
.++..+|.+++. .|++++|+..+++
T Consensus 2 ~a~~~la~~~~~-~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLA-QGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHhC
Confidence 466788988876 6899999998864
No 309
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=84.65 E-value=2.1 Score=28.26 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=22.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027404 141 VYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKA 174 (224)
Q Consensus 141 ~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeA 174 (224)
..|.+||..+|++...+..||..+. .+|+..+|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~-e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLD-EHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHH-HcCCHHHH
Confidence 3566777777777777777777665 46766554
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.30 E-value=11 Score=31.49 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH---HHHHHHHHHcCC
Q 027404 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLS---MYGDLIWINHKD 205 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld--P~da~al~---~lG~ll~~~~gd 205 (224)
|+++.|.++|.++.+..-... +.++++-.+.. ..+|+..+..++.+|-.+- +.+..... -+..++....++
T Consensus 50 Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~ 128 (177)
T PF10602_consen 50 GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRD 128 (177)
T ss_pred hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhch
Confidence 678888888888777644332 44555555554 4688888888888776542 22332221 111122233467
Q ss_pred hHHHHHHHHHHH
Q 027404 206 APRAKSYFDRAV 217 (224)
Q Consensus 206 ~eeA~~~ferAL 217 (224)
|.+|...|-.++
T Consensus 129 f~~AA~~fl~~~ 140 (177)
T PF10602_consen 129 FKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHccC
Confidence 888887775443
No 311
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.28 E-value=8.4 Score=34.03 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP----GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 150 dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP----~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
....+..|..++.++. ..|.++.|..++.++...++ ..+.+...++.++|.. |+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aR-k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~-g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLAR-KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ-GEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHH-HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 5566788899999887 69999999999999998763 2567777789999984 678999999998887
No 312
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.03 E-value=14 Score=34.01 Aligned_cols=71 Identities=21% Similarity=0.137 Sum_probs=49.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 143 yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--da~al~~lG~ll~~~~gd~eeA~~~fer 215 (224)
+++.+..||+|.++.+.+|..+. ..|+.++|.+++-..++.|-+ +..+.-.+-.++. ..|.-+.+...|+|
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~-~~g~~Dp~~~~~RR 297 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE-AFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH-hcCCCCHHHHHHHH
Confidence 44557789999999999999887 699999999999999988664 4445444434433 33422334444443
No 313
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.73 E-value=4 Score=36.25 Aligned_cols=52 Identities=23% Similarity=0.179 Sum_probs=39.0
Q ss_pred HcCCHHHHHHHHHHHHHhC-CCCHH-------HHHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Q 027404 167 IRGDFVKAEEYCGRAILAK-PGDGN-------VLSMYGDLIWINHK-DAPRAKSYFDRAVHS 219 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ld-P~da~-------al~~lG~ll~~~~g-d~eeA~~~ferAL~l 219 (224)
.+||++.|+.+|.|+=... .-++. .+++.|.-++. .+ ++++|..|+++|.++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH
Confidence 4799999999999998755 33333 34555555444 46 899999999999987
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.30 E-value=9.8 Score=31.91 Aligned_cols=64 Identities=19% Similarity=0.067 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404 157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~ 222 (224)
+.....+-. ..++.+.++..+...--+.|+.+.+-..-|.++.. .+++.+|+.+|+.+..-.|.
T Consensus 13 Lie~~~~al-~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 13 LIEVLSVAL-RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHHHHHHHH-ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCC
Confidence 334444443 47899999999999999999999998877776654 68999999999998776664
No 315
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.26 E-value=4.8 Score=36.49 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS 193 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~ 193 (224)
++++.|..+-++.|..+|.++.-+..-|.+|. +.|.+..|++-+...++.-|+++.+..
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 78999999999999999999999999898876 699999999999999999999988754
No 316
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=82.43 E-value=8.9 Score=40.02 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL 192 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al 192 (224)
+..++|..+++.--..-++|-..+-.+-.++. .++++++|..+|++|+..+|+ -..+
T Consensus 57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell 113 (932)
T KOG2053|consen 57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELL 113 (932)
T ss_pred cCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHH
Confidence 45577776666666667777777777777776 589999999999999999998 4443
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=82.26 E-value=7.3 Score=40.90 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHH---------------------HHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 132 SGKESESMDVYYQEM---------------------IKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 132 ~~~d~e~A~~~yerA---------------------Le~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
+.|+.+.|+.+|..| |+....|-.+.|.+|+.| +..|++.+|+.+|.||.+.
T Consensus 924 S~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred cccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence 447888888888876 455677788899999876 5899999999999987643
No 318
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.02 E-value=11 Score=37.38 Aligned_cols=87 Identities=14% Similarity=0.061 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHHHcC
Q 027404 135 ESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAK---PGDGN----VLSMYGDLIWINHK 204 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld---P~da~----al~~lG~ll~~~~g 204 (224)
+...++.+++..+...|.+- -.+..+|.+++....+++-|..++++|+.+- |+..+ ++..++.++.+...
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 67889999998888877763 4566678888878899999999999999753 44422 45567777666555
Q ss_pred ChHHHHHHHHHHHHhCC
Q 027404 205 DAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 205 d~eeA~~~ferAL~l~P 221 (224)
.+..|...+++|+++.-
T Consensus 104 s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELSQ 120 (629)
T ss_pred CCchHHHHHHHHHHHhc
Confidence 68899999999998754
No 319
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.80 E-value=21 Score=35.40 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHHcCC
Q 027404 136 SESMDVYYQEMIKAYPED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNV----LSMYGDLIWINHKD 205 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--da~a----l~~lG~ll~~~~gd 205 (224)
...|+.+++-+++..+-. +.+++.||.++.+.+.+++.|+.+++|++.+... ..+. ...++.++.. . +
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~-~ 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-T-N 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-c-C
Confidence 456788888888532222 3677889999988899999999999999887643 3322 2234444433 3 3
Q ss_pred hHHHHHHHHHHHHh
Q 027404 206 APRAKSYFDRAVHS 219 (224)
Q Consensus 206 ~eeA~~~ferAL~l 219 (224)
...|..+++++++.
T Consensus 115 ~~~a~~~l~~~I~~ 128 (608)
T PF10345_consen 115 PKAALKNLDKAIED 128 (608)
T ss_pred HHHHHHHHHHHHHH
Confidence 45588888887764
No 320
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=81.52 E-value=3.1 Score=25.82 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAK 162 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~ 162 (224)
+++.|...|++.+...|+ +..|..||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 455666666666666553 455555554
No 321
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=80.91 E-value=16 Score=32.58 Aligned_cols=48 Identities=13% Similarity=-0.048 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 171 FVKAEEYCGRAIL-----AKPGDGNVL---SMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 171 ~eeAe~~~erAL~-----ldP~da~al---~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
.++|.+.|+.|++ +.|.||..+ .+++.+++...++.++|....++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5589999999986 457887753 46788888888899999987777664
No 322
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=80.73 E-value=4 Score=35.76 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----C-
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE----IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH----K- 204 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e----~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~----g- 204 (224)
++|++|...|..-..-+ .++...+.||..... ..+++.+|+++|+.|.. -+++.+-.++|.++|.-. .
T Consensus 49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence 45555555554443332 357788888865432 13478899999999987 468888888998877422 2
Q ss_pred -ChHHHHHHHHHHHHhC
Q 027404 205 -DAPRAKSYFDRAVHSA 220 (224)
Q Consensus 205 -d~eeA~~~ferAL~l~ 220 (224)
+.++|+.|+.+|-.++
T Consensus 126 pd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDLE 142 (248)
T ss_pred CCcHHHHHHHHHhccCC
Confidence 3789999999987664
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.36 E-value=17 Score=31.77 Aligned_cols=56 Identities=23% Similarity=0.133 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 027404 157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~----al~~lG~ll~~~~gd~eeA~~~fer 215 (224)
...+|..+.+ .+++++|+..++.++... .|.. +-..++.+++.. +.+++|+..++.
T Consensus 92 aL~lAk~~ve-~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~-~k~D~AL~~L~t 151 (207)
T COG2976 92 ALELAKAEVE-ANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQ-KKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHh-hhHHHHHHHHhc
Confidence 3345666664 799999999999999653 3433 334678887764 679999988764
No 324
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.26 E-value=22 Score=34.52 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHH---HHHHHHHHHHHcCChH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA---KPGDGNV---LSMYGDLIWINHKDAP 207 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l---dP~da~a---l~~lG~ll~~~~gd~e 207 (224)
|+++.|..|-++|.+..|.-+.++...=...+ ..||++.|++..+...+. .++.++- -...+.......-|..
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 78899999999999999999987776544455 489999999999876643 3443331 1112222222335678
Q ss_pred HHHHHHHHHHHhCCCC
Q 027404 208 RAKSYFDRAVHSAPDD 223 (224)
Q Consensus 208 eA~~~ferAL~l~P~d 223 (224)
.|...-.+++++.|+.
T Consensus 247 ~Ar~~A~~a~KL~pdl 262 (531)
T COG3898 247 SARDDALEANKLAPDL 262 (531)
T ss_pred HHHHHHHHHhhcCCcc
Confidence 8888888999998863
No 325
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.64 E-value=15 Score=37.50 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 027404 134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV 191 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a 191 (224)
++|..++++|...+..-|.| +....+++.+|. ...++++|.++++.|=+.+|..+-.
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHHH
Confidence 34444555555554443333 223334443332 3444555555555555555544433
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.14 E-value=16 Score=30.56 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a---l~~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
.++..+|.+++ ..||+++|+++|.++.+..-..... +.++-.+.+. .+++..+..+..+|-.+
T Consensus 37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 67779999987 6999999999999988765443332 2222233333 46888888888887654
No 327
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.98 E-value=9.9 Score=31.61 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404 171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 171 ~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~ 222 (224)
.+..++..++.+...| ++.++..++.++. ..|+.++|..+.+++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCc
Confidence 4466777788888888 7788888887765 468999999999999999884
No 328
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.94 E-value=22 Score=35.83 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=61.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHHc
Q 027404 130 GDSGKESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRA-----ILAKPGDGNVLSMYGDLIWINH 203 (224)
Q Consensus 130 ~~~~~d~e~A~~~yerALe~dP~-na~~l~nlA~~l~e~~Gd~eeAe~~~erA-----L~ldP~da~al~~lG~ll~~~~ 203 (224)
...+|.+..|.+++.-.+.++|. ||.+...+-.++..+..+|+==++.++.. |.+-|+.+.... +|.++....
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~A-lA~f~l~~~ 430 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLA-LARFFLRKN 430 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHH-HHHHHHhcC
Confidence 44558999999999999999999 88766655444444555665444444433 556677665443 455555433
Q ss_pred C--ChHHHHHHHHHHHHhCC
Q 027404 204 K--DAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 204 g--d~eeA~~~ferAL~l~P 221 (224)
. +.+.|...+.+|+++-|
T Consensus 431 ~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 431 EEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ChhhHHHHHHHHHHHHHhCc
Confidence 3 25789999999999887
No 329
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.94 E-value=21 Score=33.32 Aligned_cols=89 Identities=9% Similarity=0.075 Sum_probs=59.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHH
Q 027404 130 GDSGKESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAIL--------AKPGDGNVLSMYGDLIW 200 (224)
Q Consensus 130 ~~~~~d~e~A~~~yerALe~dP~-na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~--------ldP~da~al~~lG~ll~ 200 (224)
...+|.+..|.++.+=.+.+||. ||.....+=.++..+.++++--+..++.... .-|+.+ +..+.+++
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a---~S~aLA~~ 189 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA---FSIALAYF 189 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH---HHHHHHHH
Confidence 45568999999999999999999 8854444333333356777766666665444 233333 23444455
Q ss_pred HHcCC--------------hHHHHHHHHHHHHhCC
Q 027404 201 INHKD--------------APRAKSYFDRAVHSAP 221 (224)
Q Consensus 201 ~~~gd--------------~eeA~~~ferAL~l~P 221 (224)
...+. .++|...+++|+..-|
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 44332 2899999999998776
No 330
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.80 E-value=8.8 Score=30.35 Aligned_cols=61 Identities=26% Similarity=0.280 Sum_probs=42.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCC
Q 027404 161 AKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWINH----------KDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 161 A~~l~e~~Gd~eeAe~~~erAL~ldP~da~a---l~~lG~ll~~~~----------gd~eeA~~~ferAL~l~P~ 222 (224)
|.-++ ..|++-+|++..+.+|...+++... +..-|.++..+. .-+-.|++.|.+++.+.|+
T Consensus 3 A~~~~-~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 3 AKDYF-ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred HHHHH-HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 33455 5899999999999999999988743 333454443321 1234678888888888775
No 331
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.80 E-value=17 Score=36.08 Aligned_cols=72 Identities=17% Similarity=0.005 Sum_probs=54.6
Q ss_pred CCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC-CHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404 150 YPEDAL-VLANYAKFLKEIRGDFVKAEEYCGRAILA------KPG-DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 150 dP~na~-~l~nlA~~l~e~~Gd~eeAe~~~erAL~l------dP~-da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P 221 (224)
|+++.- .+.-+|.++. ..|+.+.|..||..+++. ++. .|.+++.+|.++|..+|-+.+|.+++.+|-.-..
T Consensus 444 d~Dd~~lk~lL~g~~lR-~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILR-NLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 555543 3445677776 799999999999998832 221 4668899999999987769999999999987654
Q ss_pred C
Q 027404 222 D 222 (224)
Q Consensus 222 ~ 222 (224)
+
T Consensus 523 d 523 (546)
T KOG3783|consen 523 D 523 (546)
T ss_pred c
Confidence 3
No 332
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=77.74 E-value=9.9 Score=33.36 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 171 FVKAEEYCGRAIL-----AKPGDGNV---LSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 171 ~eeAe~~~erAL~-----ldP~da~a---l~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
.++|.++|++|+. +.|.||.. ..+++.+++...++.++|+...++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3589999999885 57888774 346788888888999999998888875
No 333
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=77.40 E-value=4.4 Score=25.88 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 190 ~al~~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
+++..+|.+-.. ..+|++|+.-|++|+++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 456667776554 45688888888887765
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.65 E-value=17 Score=27.24 Aligned_cols=54 Identities=7% Similarity=-0.039 Sum_probs=38.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHcCChHHHHHHHHHHHHh
Q 027404 164 LKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD---LIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 164 l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~---ll~~~~gd~eeA~~~ferAL~l 219 (224)
+| .+.+.++|+...++|+...++.+..+..+|. ++.++ |+|.++++|--+-+.+
T Consensus 16 LY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~-Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 16 LY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEW-GKYREMLAFALQQLEI 72 (80)
T ss_pred Hh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45 3677889999999999988887776665554 34443 6788888776655544
No 335
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=76.60 E-value=4.2 Score=23.93 Aligned_cols=14 Identities=43% Similarity=0.451 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHH
Q 027404 170 DFVKAEEYCGRAIL 183 (224)
Q Consensus 170 d~eeAe~~~erAL~ 183 (224)
|.++|..+|++|.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555544
No 336
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.39 E-value=23 Score=32.34 Aligned_cols=82 Identities=11% Similarity=-0.009 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHH-HCCCC--HH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCC
Q 027404 136 SESMDVYYQEMIK-AYPED--AL-VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN------VLSMYGDLIWINHKD 205 (224)
Q Consensus 136 ~e~A~~~yerALe-~dP~n--a~-~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~------al~~lG~ll~~~~gd 205 (224)
..+|.++..+.+. ..|+. +. .+..-+..+ ....++++|.-++++|++..-++.. ++-..+.++.+ ...
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvaf-RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake-~~k 86 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAF-RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE-LSK 86 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHH
Confidence 3445555444443 22332 22 222334344 4678999999999999954333322 22222322222 245
Q ss_pred hHHHHHHHHHHHHh
Q 027404 206 APRAKSYFDRAVHS 219 (224)
Q Consensus 206 ~eeA~~~ferAL~l 219 (224)
+.|++.+|++|..+
T Consensus 87 lsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 87 LSEVVDLYEKASEL 100 (308)
T ss_pred hHHHHHHHHHHHHH
Confidence 77888888888764
No 337
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.01 E-value=27 Score=34.65 Aligned_cols=83 Identities=23% Similarity=0.245 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHHCCC-C--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPE-D--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----------GNVLSMYGDLI 199 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~-n--a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d----------a~al~~lG~ll 199 (224)
.+.++.|+.+|..|++.--. + +.+..|+|..|. +++ +++.+|+-.=.+.|.+ +.+++.+|.+.
T Consensus 380 v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL-~~~---~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 380 VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL-RIG---DAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH-Hhc---cHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 37899999999999986433 3 345667888876 555 5666777666677763 33566667655
Q ss_pred HHHcCChHHHHHHHHHHHHhC
Q 027404 200 WINHKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 200 ~~~~gd~eeA~~~ferAL~l~ 220 (224)
+. .+++.||...+++.+++.
T Consensus 456 f~-qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 456 FK-QNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HH-hccHHHHHHHHHHHHhhc
Confidence 55 578999999999988765
No 338
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=74.35 E-value=26 Score=28.57 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404 125 GGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202 (224)
Q Consensus 125 ~~~~~~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~ 202 (224)
||.+++.+-...+.|.++-+-| .-.+.....|...+ ..|++.-|.+....++..+|++..+....+.++..+
T Consensus 46 gnP~~L~pl~p~~~A~~~v~l~-----GG~d~vl~~A~~~~-~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 46 GNPANLNPLPPEEEAKRYVELA-----GGADKVLERAQAAL-AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp S-GGGTS---HHHHHHHHHHHT-----TCHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CCccccCCCChHHHHHHHHHHc-----CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3444454444445444444333 55677777777766 599999999999999999999999988888877543
No 339
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.06 E-value=8.5 Score=28.25 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
..|+.+..+|++.| ..|++++|+.+|..||+
T Consensus 4 ~~Ai~~a~~Ave~D----------------~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 4 RDAVQFARLAVQRD----------------QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHH----------------HccCHHHHHHHHHHHHH
Confidence 35666666666543 45777777777777664
No 340
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=73.99 E-value=35 Score=34.28 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe 214 (224)
....|...|.+|=+.--.-..++..-|.+-+..++|.+-|...|+--++.-++.+..-..|..++...+ +-..|...|+
T Consensus 381 GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN-dd~N~R~LFE 459 (656)
T KOG1914|consen 381 GLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN-DDNNARALFE 459 (656)
T ss_pred hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-cchhHHHHHH
Confidence 345566666666443222223333333333335677777777777777777777766555555555543 3466777777
Q ss_pred HHHHh
Q 027404 215 RAVHS 219 (224)
Q Consensus 215 rAL~l 219 (224)
+++..
T Consensus 460 r~l~s 464 (656)
T KOG1914|consen 460 RVLTS 464 (656)
T ss_pred HHHhc
Confidence 77654
No 341
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.97 E-value=11 Score=37.53 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKP--GDGNVLSMYGDLIWINHKDAPRAKSYFDRAV 217 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP--~da~al~~lG~ll~~~~gd~eeA~~~ferAL 217 (224)
.+++|+|.++. .++++++|..++..|..+-| .++.+.. ++..+-.+.|+.+.|...+++.-
T Consensus 620 v~~~nLa~a~a-lq~~~dqAk~ll~~aatl~hs~v~~~A~~-lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 620 VLFANLAAALA-LQGHHDQAKSLLTHAATLLHSLVNVQATV-LAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHHHH-HhcccHHHHHHHHHHHHhhhccccHHHHH-HHHHHHHhcCCCcchHHHHHhcc
Confidence 57789998887 79999999999999998877 4445443 44444445688999999888753
No 342
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.96 E-value=38 Score=30.03 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404 152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAI----------------LAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 152 ~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL----------------~ldP~da~al~~lG~ll~~~~gd~eeA~~~fer 215 (224)
.||+.+..+|..++ ..+++.+|+.||-..- +..|.+.+.+...+.+.+...++...|...++.
T Consensus 88 Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 88 GDPELHHLLAEKLW-KEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp --HHHHHHHHHHHH-HTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 57899999999998 5899999988874321 234555666555555544455778888877665
Q ss_pred HHHh
Q 027404 216 AVHS 219 (224)
Q Consensus 216 AL~l 219 (224)
-++.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.64 E-value=13 Score=33.38 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=48.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
..+.+.+|+...+.-++.+|.++.....|-.+|+. .|++++|...++-+-.+.|++
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCccc
Confidence 36889999999999999999999887777666665 589999999999999999976
No 344
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=73.34 E-value=23 Score=28.94 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=40.0
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 156 VLANYAKFLKE-IRGDFVKAEEYCGRAILAKPG------------DGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 156 ~l~nlA~~l~e-~~Gd~eeAe~~~erAL~ldP~------------da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
+|..|+..-.+ ..|-|++|.+.|++|+++... |+-.+..|+.+++.+ |+|++++..-++||.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L-gry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL-GRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHH
Confidence 34444433221 358899999999999986432 233455666667664 789999888887774
No 345
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.27 E-value=13 Score=26.00 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=10.9
Q ss_pred HcCCHHHHHHHHHHHHH
Q 027404 167 IRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ 183 (224)
..|++++|+.+|..|+.
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 46677766666666654
No 346
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=71.82 E-value=8.5 Score=25.37 Aligned_cols=33 Identities=42% Similarity=0.472 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404 176 EYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (224)
Q Consensus 176 ~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA 209 (224)
..|.+||..+|++...+.-|+..+.. +|+.+.|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDE-HGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence 46889999999999999999997754 6776555
No 347
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.06 E-value=72 Score=29.91 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHH-CCCCH-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKA-YPEDA-LVLANYAKFLKE-IRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 134 ~d~e~A~~~yerALe~-dP~na-~~l~nlA~~l~e-~~Gd~eeAe~~~erAL~ 183 (224)
++|..|...|...++. .+... ..+..++..+.. ..-++++|..++++.+.
T Consensus 145 ~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 145 YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7899999999999985 44333 344454443322 36788999999987765
No 348
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=70.73 E-value=16 Score=21.76 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q 027404 171 FVKAEEYCGRAILA 184 (224)
Q Consensus 171 ~eeAe~~~erAL~l 184 (224)
.++|+.+|++|.+.
T Consensus 24 ~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 24 YEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHc
Confidence 44555555555443
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.40 E-value=34 Score=34.19 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCG 179 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~e 179 (224)
|+.-.|-+-...+|+..|++|......+.+.. ..|+|+.|.+.+.
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~-~lg~ye~~~~~~s 347 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFS-HLGYYEQAYQDIS 347 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHH-HhhhHHHHHHHhh
Confidence 67778888889999999999988888888775 5899987766553
No 350
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=70.12 E-value=39 Score=32.31 Aligned_cols=83 Identities=14% Similarity=-0.020 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C--HHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---------------------D--GNV 191 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---------------------d--a~a 191 (224)
+..+-++....||++||..+.++..+|.- ..--..+|++.|++|++..-. | ..+
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~ 275 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLV 275 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhh
Confidence 34456677888999999999998888742 234566888888888864211 1 111
Q ss_pred H--HHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404 192 L--SMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 192 l--~~lG~ll~~~~gd~eeA~~~ferAL~l~P 221 (224)
| ..++.+. ...|+..||+..|+...+-.|
T Consensus 276 YIKRRLAMCA-RklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 276 YIKRRLAMCA-RKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHH-HHhhhHHHHHHHHHHHhhhcc
Confidence 1 1233333 234789999999988776544
No 351
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.80 E-value=48 Score=31.95 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 027404 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKE-----------IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK- 204 (224)
Q Consensus 137 e~A~~~yerALe~dP~na~~l~nlA~~l~e-----------~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g- 204 (224)
+++...=.+.+..||....+|+-==.++.+ ++.-+++-+.+...+|+++|+...+|+...-++....-
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 567777888888999877666532111111 12234567888999999999999999987766643322
Q ss_pred ChHHHHHHHHHHHHhCCCCC
Q 027404 205 DAPRAKSYFDRAVHSAPDDW 224 (224)
Q Consensus 205 d~eeA~~~ferAL~l~P~d~ 224 (224)
++..=+++.++++++||.++
T Consensus 126 ~~~~EL~lcek~L~~D~RNf 145 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNF 145 (421)
T ss_pred hHHHHHHHHHHHHhcCcccc
Confidence 26778899999999999764
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.62 E-value=41 Score=35.28 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHHCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPE--D-------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-----VLSMYGDLI 199 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~--n-------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~-----al~~lG~ll 199 (224)
..+.+|..+..++-..=|. + +++..--|.+.. .++++++|+++.+.|+..-|.+.. ++...+.+.
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 6778888887777665333 2 122233344444 589999999999999988886543 344555554
Q ss_pred HHHcCChHHHHHHHHHHHHh
Q 027404 200 WINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 200 ~~~~gd~eeA~~~ferAL~l 219 (224)
+..|++++|..+.+++.++
T Consensus 508 -~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 508 -HIRGELTQALALMQQAEQM 526 (894)
T ss_pred -HHhchHHHHHHHHHHHHHH
Confidence 3468999999999888776
No 353
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=68.53 E-value=11 Score=23.40 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404 170 DFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (224)
Q Consensus 170 d~eeAe~~~erAL~ldP~da~al~~lG~ 197 (224)
+++.|...|+|.+...|+ +.+|..||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 578999999999999985 667776664
No 354
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.12 E-value=17 Score=33.25 Aligned_cols=67 Identities=12% Similarity=-0.038 Sum_probs=55.3
Q ss_pred CCCCC-CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 027404 125 GGGGD-GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL 192 (224)
Q Consensus 125 ~~~~~-~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al 192 (224)
-||.+ ....+++-+++++.-..|..+|.|..+++.-|.+.. .-=+.++|.+-|.++++++|.-+.+-
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 56654 334478999999999999999999999999888775 35578899999999999999876653
No 355
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=67.95 E-value=10 Score=24.16 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAK 185 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld 185 (224)
+++..+|.+-.+ ..+|++|+.-|++|+++.
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 567788888774 889999999999999763
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.81 E-value=27 Score=26.09 Aligned_cols=50 Identities=4% Similarity=0.018 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHh
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAK---FLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~---~l~e~~Gd~eeAe~~~erAL~l 184 (224)
++.++|+..+++||+..++.++.+..+|. ++. ..|++.+++++..+=+.+
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~-e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHM-EWGKYREMLAFALQQLEI 72 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 57889999999999999998876666554 344 468888888877665554
No 357
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=67.67 E-value=33 Score=30.34 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHH----------HcCCHHHHHHHHHHHHHh-----CCCCHHH--HHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLA-NYAKFLKE----------IRGDFVKAEEYCGRAILA-----KPGDGNV--LSM 194 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~-nlA~~l~e----------~~Gd~eeAe~~~erAL~l-----dP~da~a--l~~ 194 (224)
.|+++.|.++.+-||+.+-.-|+-+. +.+.++.+ ..|..-+ ..+++....+ =|+...+ +-.
T Consensus 96 ~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e-~~~~~~~~~l~~~~dmpd~vrAKl~K~ 174 (230)
T PHA02537 96 IGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVE-PYFLRVFLDLTTEWDMPDEVRAKLYKA 174 (230)
T ss_pred ccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 37999999999999998655443222 33322221 2232111 1112222222 1222222 333
Q ss_pred HHHHHHH--------HcCChHHHHHHHHHHHHhCCC
Q 027404 195 YGDLIWI--------NHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 195 lG~ll~~--------~~gd~eeA~~~ferAL~l~P~ 222 (224)
.|.+++. ..++.+.|+.+|++|+.++|+
T Consensus 175 ~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 175 AGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 4444421 124678999999999999986
No 358
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.56 E-value=8.9 Score=26.79 Aligned_cols=14 Identities=36% Similarity=0.233 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhC
Q 027404 172 VKAEEYCGRAILAK 185 (224)
Q Consensus 172 eeAe~~~erAL~ld 185 (224)
++|..+..+|+..+
T Consensus 3 ~~A~~~~~~Av~~D 16 (69)
T PF04212_consen 3 DKAIELIKKAVEAD 16 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666543
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=67.55 E-value=17 Score=33.04 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
+++++.++..+++.+..+|-+-..|..+=.+++ +.|+...|+..|++.-..
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred cccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 368899999999999999999887777666666 699999999999987763
No 360
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.11 E-value=21 Score=36.56 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
..|+.-+ -++ ...+|..++++|...+.-=|.| +....+++.+|+.+. +.+.|+++++.|-+.+|.+
T Consensus 356 iLWn~A~-~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~-QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 356 LLWNTAK-KLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE-QLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred HHHHhhH-HHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcccc
Confidence 3344433 344 4689999999999999876654 334556777776654 6999999999999999865
No 361
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.77 E-value=14 Score=26.92 Aligned_cols=38 Identities=5% Similarity=0.085 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCCCCH
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFV-------KAEEYCGRAILAKPGDG 189 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~e-------eAe~~~erAL~ldP~da 189 (224)
-..|..+..+|++.| ..|+++ +|+++|..++...|+..
T Consensus 3 ~~~a~~l~~~Ave~D----------------~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 3 ELAAKEVLKRAVELD----------------QEGRFQEALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred hHHHHHHHHHHHHHH----------------HhccHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 356777777776653 234444 55555555566676543
No 362
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=66.55 E-value=31 Score=36.53 Aligned_cols=86 Identities=13% Similarity=0.080 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CChHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH----KDAPRAK 210 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~----gd~eeA~ 210 (224)
.+++|..-|++. .-.|.-|.-+..-|.+|. +.+++++-+++|.-|++.-|++|..-..--.+.+.++ .+...|.
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666543 345666777777787765 8999999999999999999999875432222222211 2345676
Q ss_pred HHHHHHHHhCCC
Q 027404 211 SYFDRAVHSAPD 222 (224)
Q Consensus 211 ~~ferAL~l~P~ 222 (224)
.+.--|+.+.|.
T Consensus 612 ~~~~~~~~~~~~ 623 (932)
T PRK13184 612 VFMLLALWIAPE 623 (932)
T ss_pred HHHHHHHHhCcc
Confidence 777777777775
No 363
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.42 E-value=69 Score=31.73 Aligned_cols=85 Identities=13% Similarity=0.043 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHCCCC--HH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH-HHHHH-HHHH
Q 027404 134 KESESMDVYYQEMIKAYPED--AL----VLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLS-MYGDL-IWIN 202 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~n--a~----~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---da~al~-~lG~l-l~~~ 202 (224)
.+++.|+.+++||+.+.-.+ .+ +.+-++.++. ..+ ...|..+++++|+.--+ .+..|. .+-.+ +...
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~-~~~-~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYF-KTN-PKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-hcC-HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 68999999999998887443 32 2334566665 344 44599999999976544 222221 11111 1111
Q ss_pred cCChHHHHHHHHHHHHhC
Q 027404 203 HKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 203 ~gd~eeA~~~ferAL~l~ 220 (224)
.+|+..|++.++....+.
T Consensus 152 ~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLA 169 (608)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 268999999999887764
No 364
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=64.64 E-value=29 Score=34.79 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCG 179 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~e 179 (224)
+..++|.++|++.+.++|+ +.++.||.-++ +.|-...|...++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~ 98 (578)
T PRK15490 56 NETERAYALYETLIAQNND--EARYEYARRLY-NTGLAKDAQLILK 98 (578)
T ss_pred hhhHhHHHHHHHHHHhCCc--chHHHHHHHHH-hhhhhhHHHHHHH
Confidence 4555555666666666555 44455555554 4555555555444
No 365
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.01 E-value=17 Score=26.73 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
++++|+.+..+|+..| ..|++++|+.+|..||+.
T Consensus 2 ~l~kai~Lv~~A~~eD----------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED----------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh----------------HhhhHHHHHHHHHHHHHH
Confidence 3466777777775442 357777888888877753
No 366
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=63.39 E-value=36 Score=32.29 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--dP~da~al~~lG~ll~~~~gd~eeA~~ 211 (224)
.+|..-..+|+-...+.|. |.+-.|-|.++.+..| .+.++...+...+. --.+...+..-|.++.. .|+.++|.+
T Consensus 310 tDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~G-p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~eAr~ 386 (415)
T COG4941 310 TDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREG-PAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEEARA 386 (415)
T ss_pred CChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhh-HHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHHHHH
Confidence 4566666666655555554 3444444444443333 45666665555433 11233334445555544 578999999
Q ss_pred HHHHHHHhCCC
Q 027404 212 YFDRAVHSAPD 222 (224)
Q Consensus 212 ~ferAL~l~P~ 222 (224)
.|++|+.+.++
T Consensus 387 aydrAi~La~~ 397 (415)
T COG4941 387 AYDRAIALARN 397 (415)
T ss_pred HHHHHHHhcCC
Confidence 99999998775
No 367
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=62.05 E-value=40 Score=33.86 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 152 EDALVLANYAKFLKEI--RGDFVKAEEYCGRAILAK-----PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 152 ~na~~l~nlA~~l~e~--~Gd~eeAe~~~erAL~ld-----P~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
..|.++.+||.+- +. ..+-..+++.|.+||... -.|...|..+|..++. +++|.+|+.++-.|-.
T Consensus 275 ~YPmALg~LadLe-Ei~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 275 RYPMALGNLADLE-EIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAAD 346 (618)
T ss_dssp T-HHHHHHHHHHH-HHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHH-hhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHH
Confidence 3578888998753 32 223457899999999753 3455567777877655 6889999999887754
No 368
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=61.80 E-value=12 Score=27.18 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
.+|...+.+|++. +..|++++|..+|..+|+.
T Consensus 4 ~~A~~l~~~Ave~----------------d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEK----------------EEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHH----------------HHHhhHHHHHHHHHHHHHH
Confidence 4566666666443 3469999999999999863
No 369
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.37 E-value=18 Score=23.77 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 157 LANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
.+++|.+|. ..||.+.|.+.++..+.
T Consensus 2 kLdLA~ayi-e~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYI-EMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 367899888 59999999999999995
No 370
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=61.20 E-value=25 Score=25.19 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 027404 136 SESMDVYYQEMIKA 149 (224)
Q Consensus 136 ~e~A~~~yerALe~ 149 (224)
++.|+.++.+|++.
T Consensus 3 ~~~A~~l~~~Av~~ 16 (75)
T cd02678 3 LQKAIELVKKAIEE 16 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777554
No 371
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=61.10 E-value=71 Score=33.89 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH---cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027404 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEI---RG---DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK 204 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~---~G---d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g 204 (224)
+.|++|...|++.-...|+-. ++.+..|..+.+. ++ ++++|+.-|++.- -.|.-|.-|.--|.+| +..+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 566 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY-QRLG 566 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH-HHhh
Confidence 789999999999999999876 6777777776542 23 3556666666644 2344444444444454 4468
Q ss_pred ChHHHHHHHHHHHHhCCCC
Q 027404 205 DAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 205 d~eeA~~~ferAL~l~P~d 223 (224)
+++|-+..|.-|++--|++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred hHHHHHHHHHHHHHhcCCC
Confidence 9999999999999987764
No 372
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.08 E-value=19 Score=26.36 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHhC
Q 027404 170 DFVKAEEYCGRAILAK 185 (224)
Q Consensus 170 d~eeAe~~~erAL~ld 185 (224)
++++|+.++++|+..|
T Consensus 2 ~l~kai~Lv~~A~~eD 17 (75)
T cd02680 2 DLERAHFLVTQAFDED 17 (75)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 4578888888887654
No 373
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.55 E-value=25 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 157 LANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
+..-|.-. +..|++++|+.+|.+|++
T Consensus 9 l~~~Av~~-D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 9 LVKKAIEE-DNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHH
Confidence 33444333 478999999999998885
No 374
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=60.27 E-value=18 Score=25.63 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.2
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 027404 166 EIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 166 e~~Gd~eeAe~~~erAL~ 183 (224)
+..|++++|+.+|..|++
T Consensus 19 d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 19 DEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 458999999999988885
No 375
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=59.25 E-value=26 Score=25.50 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404 171 FVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 171 ~eeAe~~~erAL~ldP~--da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~ 222 (224)
-..|+.++.+|++.|-. +..|+. .|.+|+++|-.+++..|+
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~-----------~Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALV-----------CYQEGIDLLMQVLKGTKD 45 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHH-----------HHHHHHHHHHHHHhhCCC
Confidence 35788888888876532 222211 245566666666666654
No 376
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.18 E-value=23 Score=30.87 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHcCCHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPE----DALVLANYAKFLKEIRGDFVKAE 175 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~----na~~l~nlA~~l~e~~Gd~eeAe 175 (224)
.+.++|+.+|.++|++.+. |++++..+|.+++ .+++++.|-
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~-~~~~~e~AY 198 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ-KLKNYEQAY 198 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-Hhcchhhhh
Confidence 5789999999999998444 5899999999987 699998874
No 377
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=59.08 E-value=56 Score=32.02 Aligned_cols=78 Identities=10% Similarity=-0.064 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHH--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404 134 KESESMDVYYQEMIKA--------YPEDA----------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY 195 (224)
Q Consensus 134 ~d~e~A~~~yerALe~--------dP~na----------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l 195 (224)
+.|..|..-|+.||++ .|..+ .+-..+..+|. +.++.+.|+.+..|.|.++|.+...+..-
T Consensus 190 k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL-~~rkpdlALnh~hrsI~lnP~~frnHLrq 268 (569)
T PF15015_consen 190 KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYL-RMRKPDLALNHSHRSINLNPSYFRNHLRQ 268 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhh-hcCCCchHHHHHhhhhhcCcchhhHHHHH
Confidence 5777788888888775 22222 12224444444 78999999999999999999998877766
Q ss_pred HHHHHHHcCChHHHHHHH
Q 027404 196 GDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 196 G~ll~~~~gd~eeA~~~f 213 (224)
|.+... ..+|.+|...+
T Consensus 269 AavfR~-LeRy~eAarSa 285 (569)
T PF15015_consen 269 AAVFRR-LERYSEAARSA 285 (569)
T ss_pred HHHHHH-HHHHHHHHHHH
Confidence 665433 34677666544
No 378
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=59.03 E-value=19 Score=25.45 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.3
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 027404 166 EIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 166 e~~Gd~eeAe~~~erAL~ 183 (224)
+..|++++|+.+|..|++
T Consensus 17 D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 17 DEDGNYEEALELYKEALD 34 (75)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 467999999999998885
No 379
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=58.95 E-value=6.7 Score=37.01 Aligned_cols=66 Identities=17% Similarity=0.045 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
...|++.+.. ..+++..|+....-+++.++....+++..+..+.. ..++++|++.++.|...+|++
T Consensus 277 ~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 277 IRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKL-LKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred cccchHHhcc-cccCCCcceeccccccccChhhCcHHHHHHhHHHh-hhchhhhHHHHHHhhccCcch
Confidence 3445555544 45667777777777777777777777777766544 346788888888887777765
No 380
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=58.81 E-value=18 Score=26.57 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCCCCHHHHH
Q 027404 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFV-------KAEEYCGRAILAKPGDGNVLS 193 (224)
Q Consensus 137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~e-------eAe~~~erAL~ldP~da~al~ 193 (224)
+.|..+..+|++.|- .|+++ +|++.+.+++..-|++.....
T Consensus 4 ~~A~~~a~~AVe~D~----------------~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 4 EMARKYAINAVKAEK----------------EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 456667777766543 44444 455555555567787776543
No 381
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=58.52 E-value=12 Score=37.36 Aligned_cols=57 Identities=12% Similarity=-0.031 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV 191 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a 191 (224)
++.-.|..-...|+++||-...+|+.++.++. ..+++.+|+.+...+....|.+...
T Consensus 425 ~d~~~AlrDch~Alrln~s~~kah~~la~aL~-el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 425 GDSYLALRDCHVALRLNPSIQKAHFRLARALN-ELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred ccHHHHHHhHHhhccCChHHHHHHHHHHHHHH-HHhhHHHhhhhHHHHhhcCchhhhh
Confidence 56778888999999999999999999999998 5899999999999999999966543
No 382
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=58.30 E-value=63 Score=27.01 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=44.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P 221 (224)
...++++++..+...--+.|+.+.+-..-|.++.. .|++.+|+.+|+....-.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCC
Confidence 47899999999999889999999988777766654 6899999999998765543
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.95 E-value=21 Score=33.27 Aligned_cols=58 Identities=17% Similarity=0.033 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404 157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA 216 (224)
Q Consensus 157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferA 216 (224)
+.-.+..+. ..|.+.+|+++.+|++.++|=+-..+..+-.++.. .||-=.|+..|++.
T Consensus 282 lgkva~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHH
Confidence 344555555 58999999999999999999888887766666544 46655566555543
No 384
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=57.89 E-value=28 Score=34.90 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f 213 (224)
...++|....+.-+-.....+..++.-|.++. .-+..++|-++|++.+.++|++ .+..++.-+.. .|-..+|...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~ 97 (578)
T PRK15490 22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLH-DVNETERAYALYETLIAQNNDE--ARYEYARRLYN-TGLAKDAQLIL 97 (578)
T ss_pred hhHHHHHHHHHHhCCccchhHHHHHHHhhhhh-hhhhhHhHHHHHHHHHHhCCcc--hHHHHHHHHHh-hhhhhHHHHHH
Confidence 44566666666555555555666777788876 4789999999999999999984 44456655544 45566666655
Q ss_pred H
Q 027404 214 D 214 (224)
Q Consensus 214 e 214 (224)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 4
No 385
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.89 E-value=42 Score=38.79 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHH---CCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404 136 SESMDVYYQEMIKA---YPE----DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (224)
Q Consensus 136 ~e~A~~~yerALe~---dP~----na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee 208 (224)
..+-+-.++|++-. +|+ -+++|..+|++.. ..|+++.|..++..|.+.. -+.+....|..+|. .||...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHH
Confidence 45555666666532 332 3689999999986 6999999999999999988 56677788899998 578999
Q ss_pred HHHHHHHHHHhC
Q 027404 209 AKSYFDRAVHSA 220 (224)
Q Consensus 209 A~~~ferAL~l~ 220 (224)
|+.+++..+.++
T Consensus 1721 Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1721 ALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhh
Confidence 999999999553
No 386
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.16 E-value=34 Score=35.76 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHH---HHHHHHH--HHHc
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP-----GDGNVL---SMYGDLI--WINH 203 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP-----~da~al---~~lG~ll--~~~~ 203 (224)
+..+.|+.||++|.+..|.- ..-.|+|.++...-..++..++.-.-++.++. ....-+ +..|..+ -.+.
T Consensus 301 ~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLA 379 (1226)
T KOG4279|consen 301 ESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLA 379 (1226)
T ss_pred hhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhc
Confidence 56789999999999999974 33346666655322345555554444444432 222222 1222111 0124
Q ss_pred CChHHHHHHHHHHHHhCCCCC
Q 027404 204 KDAPRAKSYFDRAVHSAPDDW 224 (224)
Q Consensus 204 gd~eeA~~~ferAL~l~P~d~ 224 (224)
.|+.+|+..-++.+++.|-.|
T Consensus 380 nd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 380 NDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred cCHHHHHHHHHHHhccCCcee
Confidence 689999999999999998665
No 387
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=56.39 E-value=34 Score=24.13 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d 188 (224)
.+++|..+..+|++.|-. .++..++. -|..|+++|.+++...|+.
T Consensus 4 ~~~~A~~li~~Av~~d~~-----g~~~eAl~----~Y~~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 4 YLSKAKELISKALKADEA-----GDYEEALE----LYKKAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHc-----CCHHHHHH----HHHHHHHHHHHHhccCCCH
Confidence 467899999999888663 22332222 3668999999999998753
No 388
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=56.00 E-value=25 Score=26.03 Aligned_cols=34 Identities=12% Similarity=-0.035 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
+.|++|..+-.+||..|- .|+.+.|+.+|+++|.
T Consensus 3 ~~~~~A~~~I~kaL~~dE----------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRADE----------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhhh----------------cCCHHHHHHHHHHHHH
Confidence 346777777777766543 3555666666666554
No 389
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=55.96 E-value=45 Score=33.05 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=59.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 142 ~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
-++.-|+-||+|...|+.+-..+- .++.+++-.+.|++....-|-.+.||..|-.--+. .++|..-+..|-+.+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~-tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-~~df~svE~lf~rCL~ 104 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLE-TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA-RKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHh-hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh-hhhHHHHHHHHHHHHh
Confidence 678889999999999999988775 79999999999999999999888887654221112 3578877888887775
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.91 E-value=85 Score=29.43 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH-HHHHHH--HHHHHHHcCChHHHHHHHHHHHHh
Q 027404 159 NYAKFLKEIRGDFVKAEEYCGRAILA-KPGDG-NVLSMY--GDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 159 nlA~~l~e~~Gd~eeAe~~~erAL~l-dP~da-~al~~l--G~ll~~~~gd~eeA~~~ferAL~l 219 (224)
..+.-++ ..++|..|.+.|...+.. .++.. ..+..+ |...|+. -++++|..+++..+..
T Consensus 136 ~~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~-fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDR-FDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHH
Confidence 3444556 589999999999999985 44332 233333 3345775 4799999999987753
No 391
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.85 E-value=61 Score=25.52 Aligned_cols=73 Identities=8% Similarity=0.139 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCC
Q 027404 137 ESMDVYYQEMIKAYPEDA---------LVLANYAKFLKEIRGDFVKAEEYCGRAIL--AKPGDGNVLSMYGDLIWINHKD 205 (224)
Q Consensus 137 e~A~~~yerALe~dP~na---------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~--ldP~da~al~~lG~ll~~~~gd 205 (224)
..-...++++++.-.++. .+|..||.+ ...+...|..... +--..+..|..+|.++. ..++
T Consensus 43 ~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~-------~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le-~~~~ 114 (126)
T PF08311_consen 43 SGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL-------SSDPREIFKFLYSKGIGTKLALFYEEWAEFLE-KRGN 114 (126)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT-------BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHH-HTT-
T ss_pred hHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH-------ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHH-HcCC
Confidence 334557777777655542 334444431 2277788877665 55567888888887765 4689
Q ss_pred hHHHHHHHHHHH
Q 027404 206 APRAKSYFDRAV 217 (224)
Q Consensus 206 ~eeA~~~ferAL 217 (224)
+++|.+.|+++|
T Consensus 115 ~~~A~~I~~~Gi 126 (126)
T PF08311_consen 115 FKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC
Confidence 999999999886
No 392
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=55.79 E-value=72 Score=29.02 Aligned_cols=60 Identities=13% Similarity=0.007 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cC-----------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404 138 SMDVYYQEMIKAYPEDALVLANYAKFLKEI----RG-----------------DFVKAEEYCGRAILAKPGDGNVLSMYG 196 (224)
Q Consensus 138 ~A~~~yerALe~dP~na~~l~nlA~~l~e~----~G-----------------d~eeAe~~~erAL~ldP~da~al~~lG 196 (224)
.-...++.=++..|+..-++..+|.++... .| -.+.|..++.+||+++|....++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 356677778899999998888888776431 11 144799999999999999988876553
Q ss_pred H
Q 027404 197 D 197 (224)
Q Consensus 197 ~ 197 (224)
+
T Consensus 141 ~ 141 (277)
T PF13226_consen 141 N 141 (277)
T ss_pred H
Confidence 3
No 393
>PF12854 PPR_1: PPR repeat
Probab=55.29 E-value=30 Score=20.85 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGR 180 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~er 180 (224)
..|..+-..+. +.|+.++|++.|++
T Consensus 8 ~ty~~lI~~~C-k~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYC-KAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHH-HCCCHHHHHHHHHh
Confidence 44444444555 46777777776654
No 394
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=54.33 E-value=27 Score=24.67 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d 188 (224)
+..|..+..+|++.|-. .++..++. -|..|+++|.+++...|+.
T Consensus 3 ~~~a~~l~~~Av~~D~~-----g~~~~Al~----~Y~~a~e~l~~~~~~~~~~ 46 (75)
T cd02656 3 LQQAKELIKQAVKEDED-----GNYEEALE----LYKEALDYLLQALKAEKEP 46 (75)
T ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHHH----HHHHHHHHHHHHhccCCCH
Confidence 46788888899877654 33333332 3678999999999888763
No 395
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=54.11 E-value=57 Score=31.42 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027404 186 PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAV 217 (224)
Q Consensus 186 P~da~al~~lG~ll~~~~gd~eeA~~~ferAL 217 (224)
-+++..|..+|.+.+. .|+++-|+.+|+++-
T Consensus 344 ~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALR-QGNIELAEECYQKAK 374 (443)
T ss_dssp CSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT
T ss_pred cCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhc
Confidence 3577889999987655 689999999998753
No 396
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=54.06 E-value=90 Score=23.31 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199 (224)
Q Consensus 168 ~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll 199 (224)
-++...++.-...+++.+|+||.++..|...+
T Consensus 20 a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l 51 (80)
T PRK15326 20 VDNLQTQVTEALDKLAAKPSDPALLAAYQSKL 51 (80)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34555666666667788999999888776554
No 397
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.34 E-value=86 Score=27.36 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHcCChH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANY-----AKFLKEIRGDFVKAEEYCGRA-ILAKPGDGNVLSMYGDLIWINHKDAP 207 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nl-----A~~l~e~~Gd~eeAe~~~erA-L~ldP~da~al~~lG~ll~~~~gd~e 207 (224)
++...|..+|..+-.-.| -|.+..++ |.+|. ..|-|+.-..-.+.. -..+|--..+.-.||..-|+ .|+++
T Consensus 108 gdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLv-D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-agd~a 184 (221)
T COG4649 108 GDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLV-DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-AGDFA 184 (221)
T ss_pred ccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHh-ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-ccchH
Confidence 566777777766544433 23333333 22333 356666554444322 12233333344456655555 58999
Q ss_pred HHHHHHHHHHH
Q 027404 208 RAKSYFDRAVH 218 (224)
Q Consensus 208 eA~~~ferAL~ 218 (224)
+|..+|++...
T Consensus 185 ~A~~~F~qia~ 195 (221)
T COG4649 185 KAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHc
Confidence 99999998765
No 398
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.84 E-value=1.9e+02 Score=29.35 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHH-CCC-----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------Hh----------
Q 027404 134 KESESMDVYYQEMIKA-YPE-----------DALVLANYAKFLKEIRGDFVKAEEYCGRAI-------LA---------- 184 (224)
Q Consensus 134 ~d~e~A~~~yerALe~-dP~-----------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL-------~l---------- 184 (224)
..|++|+..|.-|++. +|+ |.+.+..+|.++. .+||.+-|....+|+| ..
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r-~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFR-FQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 5788999999988765 443 4567778888876 6899875555555544 31
Q ss_pred ----CCCCHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHhCCC
Q 027404 185 ----KPGDGNVLSMYGDL--IWINHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 185 ----dP~da~al~~lG~l--l~~~~gd~eeA~~~ferAL~l~P~ 222 (224)
.|.+...|..+-.. -+..+|...-|.++.+-.+.++|.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 22222222111111 113458899999999999999997
No 399
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=52.74 E-value=1.3e+02 Score=27.68 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404 170 DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 170 d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fer 215 (224)
..-+|+..++.++..+|.+......+-.+|.. -|-...|...|+.
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHh
Confidence 34489999999999999999998888777765 4788999888863
No 400
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.65 E-value=28 Score=25.71 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 027404 169 GDFVKAEEYCGRAILAKP 186 (224)
Q Consensus 169 Gd~eeAe~~~erAL~ldP 186 (224)
+-|++|.++..+||..+-
T Consensus 3 ~~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 3 GYYKQAFEEISKALRADE 20 (79)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 457788888888887753
No 401
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.24 E-value=17 Score=37.94 Aligned_cols=89 Identities=7% Similarity=0.004 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404 131 DSGKESESMDVYYQEMIKAYPE-DALVLANYAKFLKE--------IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe~dP~-na~~l~nlA~~l~e--------~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~ 201 (224)
-..|+.++|......+++.+-. .++.+..-|++|.. ..+..+.|+++|++|.+..|....-. +++.++..
T Consensus 254 Nr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGI-N~atLL~a 332 (1226)
T KOG4279|consen 254 NRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGI-NLATLLRA 332 (1226)
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccc-cHHHHHHH
Confidence 3447999999999999997654 45666666666542 12456689999999999999754433 45665555
Q ss_pred HcCChHHHHHHHHHHHHhC
Q 027404 202 NHKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 202 ~~gd~eeA~~~ferAL~l~ 220 (224)
.+..|+...+.-.-+++++
T Consensus 333 aG~~Fens~Elq~IgmkLn 351 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLN 351 (1226)
T ss_pred hhhhccchHHHHHHHHHHH
Confidence 5555666666655555543
No 402
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=52.23 E-value=69 Score=31.78 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fer 215 (224)
.+.|...|-++=..--.-+.++..-|.+-+..++|+.-|-..|+--+..-|+++..-..|-.++... +|-..|.+.|+.
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i-nde~naraLFet 491 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI-NDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 4455555555543332222333322323233466666666666666666666554433333333332 345566666665
Q ss_pred HH
Q 027404 216 AV 217 (224)
Q Consensus 216 AL 217 (224)
++
T Consensus 492 sv 493 (660)
T COG5107 492 SV 493 (660)
T ss_pred hH
Confidence 54
No 403
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=51.76 E-value=71 Score=24.62 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCG 179 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~e 179 (224)
+.......+++.++..++.++..+..|...+. .-+..+.+.+++
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~--~~~~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA--KYDPQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH--HHCHHHHHHHHH
Confidence 46788999999999999888888888887664 345667777766
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.47 E-value=1.2e+02 Score=23.79 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027404 138 SMDVYYQEMIKAY--PEDALVLANYAKFLKEIRGDFVKAEEYCGRAI 182 (224)
Q Consensus 138 ~A~~~yerALe~d--P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL 182 (224)
.+...|..+.... -..+..+..+|.++. ..|++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le-~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLE-KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhhC
Confidence 6677777777654 445788888898875 7999999999999886
No 405
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.55 E-value=84 Score=29.43 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=11.2
Q ss_pred cCChHHHHHHHHHHHHhCC
Q 027404 203 HKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 203 ~gd~eeA~~~ferAL~l~P 221 (224)
.|.+.+|+++.++++.++|
T Consensus 292 ~g~~neAi~l~qr~ltldp 310 (361)
T COG3947 292 AGKPNEAIQLHQRALTLDP 310 (361)
T ss_pred cCChHHHHHHHHHHhhcCh
Confidence 3456666666666666555
No 406
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=49.27 E-value=99 Score=22.38 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMI 147 (224)
Q Consensus 134 ~d~e~A~~~yerAL 147 (224)
+++++|..+|+++|
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444444
No 407
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=49.07 E-value=45 Score=32.85 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGR 180 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~er 180 (224)
|++.++.-+-.=..+++| .+.++..+|.++++ +.+|++|-.|+..
T Consensus 476 gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQK 520 (549)
T ss_pred ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHh
Confidence 677777777777789999 89999999999985 8999999999875
No 408
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=48.43 E-value=49 Score=27.07 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHCCC-----C----------HHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCCCH
Q 027404 134 KESESMDVYYQEMIKAYPE-----D----------ALVLANYAKFLKEIRGDFVKAEEYCGRA----ILAKPGDG 189 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~-----n----------a~~l~nlA~~l~e~~Gd~eeAe~~~erA----L~ldP~da 189 (224)
+++-.|+-+|++|+.+--+ . ....+|+|.|+. .+||.+=.++|++-| +.+-|+-+
T Consensus 15 ~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR-~~gd~~yELkYLqlASE~VltLiPQCp 88 (140)
T PF10952_consen 15 ADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWR-SQGDSDYELKYLQLASEKVLTLIPQCP 88 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHH-HcCChHHHHHHHHHHHHHHHHhccCCC
Confidence 5778899999999865211 1 123469999986 799999999999754 55666543
No 409
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=48.30 E-value=48 Score=23.94 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.7
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 027404 166 EIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 166 e~~Gd~eeAe~~~erAL~l 184 (224)
...|++++|..+|..||+.
T Consensus 17 D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 17 DQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4689999999999988853
No 410
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.16 E-value=77 Score=31.56 Aligned_cols=80 Identities=24% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCChHHHHH
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV----LSMYGDLIWINHKDAPRAKS 211 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a----l~~lG~ll~~~~gd~eeA~~ 211 (224)
.+..++.......+.|.++.++.+.|..+. ..|+.+.|+.++..++. +.--++ ++..+.+.... .++.+|..
T Consensus 249 ~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~-~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~-~~~~~aad 324 (546)
T KOG3783|consen 249 GEECEKALKKYRKRYPKGALWLLMEARILS-IKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQ-HQYSRAAD 324 (546)
T ss_pred HHHHHHHhHHHHHhCCCCccHHHHHHHHHH-HcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 377778888888899999999999999886 68889999999999987 322222 22233332222 35788888
Q ss_pred HHHHHHHh
Q 027404 212 YFDRAVHS 219 (224)
Q Consensus 212 ~ferAL~l 219 (224)
++....+.
T Consensus 325 ~~~~L~de 332 (546)
T KOG3783|consen 325 SFDLLRDE 332 (546)
T ss_pred HHHHHHhh
Confidence 87776554
No 411
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=47.75 E-value=55 Score=23.63 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG 189 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da 189 (224)
.+++|+.+..+|++.|-. .+|..++. -|..|+++|..+++..++..
T Consensus 2 ~l~~Ai~lv~~Av~~D~~-----g~y~eA~~----lY~~ale~~~~~~k~e~~~~ 47 (75)
T cd02684 2 SLEKAIALVVQAVKKDQR-----GDAAAALS----LYCSALQYFVPALHYETDAQ 47 (75)
T ss_pred cHHHHHHHHHHHHHHHHh-----ccHHHHHH----HHHHHHHHHHHHHhhCCCHH
Confidence 357889999999876542 23332222 25689999999998876443
No 412
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=47.50 E-value=30 Score=33.14 Aligned_cols=48 Identities=19% Similarity=0.109 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------cCChHHHHHHHHHHHHhC
Q 027404 171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN-----------HKDAPRAKSYFDRAVHSA 220 (224)
Q Consensus 171 ~eeAe~~~erAL~ldP~da~al~~lG~ll~~~-----------~gd~eeA~~~ferAL~l~ 220 (224)
..+|+.|+++|.. -++|..|..+|.++..+ ..-|++|+..+++|-+.-
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 3478889988886 34556665555554432 234778888888886643
No 413
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=47.21 E-value=21 Score=33.74 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ 197 (224)
++..|.....-+++.++....+++-.+..+. ...++++|++.++.|...+|++......+..
T Consensus 290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~-~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 290 GRGGARFRTNEALRDERSKTKAHYRRGQAYK-LLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred CCCcceeccccccccChhhCcHHHHHHhHHH-hhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 3344444445555577777777777776665 5789999999999999999999987665543
No 414
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=47.06 E-value=45 Score=32.95 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDAL-VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL 192 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~-~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al 192 (224)
.+...|..-|..||+.+|.-|. ++..|-.++...++|---.+.+|+..+++||.-+..+
T Consensus 326 drrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAaqm 385 (615)
T KOG3540|consen 326 DRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAAQM 385 (615)
T ss_pred hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 3445688889999999998873 3333333332235555667889999999998766543
No 415
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=46.45 E-value=1.8e+02 Score=30.67 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------cCC
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN------HKD 205 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e--~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~------~gd 205 (224)
+++++-...-+++-++.|.++.+|.++..-..- ..++..+++..|++|+ .+=+....|..++..+... .++
T Consensus 127 ~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d 205 (881)
T KOG0128|consen 127 GDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSED 205 (881)
T ss_pred cchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhcccccccccc
Confidence 555555556666666666666666665433221 1244556666666666 3334555555554433221 134
Q ss_pred hHHHHHHHHHHHH
Q 027404 206 APRAKSYFDRAVH 218 (224)
Q Consensus 206 ~eeA~~~ferAL~ 218 (224)
++.-...|.+|+.
T Consensus 206 ~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 206 YKKERSVFERALR 218 (881)
T ss_pred chhhhHHHHHHHh
Confidence 5555556666654
No 416
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.79 E-value=2.3e+02 Score=27.02 Aligned_cols=46 Identities=7% Similarity=0.007 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPED-----ALVLANYAKFLKE-IRGDFVKAEEYCG 179 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~n-----a~~l~nlA~~l~e-~~Gd~eeAe~~~e 179 (224)
.+|..|...|+++++..+.. ...+..++..+.. ..-++++|..+++
T Consensus 144 ~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 144 FDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred cChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 78999999999999886532 2344555544432 3568899999998
No 417
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=45.14 E-value=31 Score=32.43 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS 193 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~ 193 (224)
.++|+.+|++|++ .++.|..-+|+..|+.|+++-|+---.+.
T Consensus 16 ~kkA~~l~~~av~----------------~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 16 AKKAIALYEKAVL----------------KEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHH----------------HhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 3567777777753 35678888999999999999876554544
No 418
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.65 E-value=1.3e+02 Score=30.04 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404 125 GGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202 (224)
Q Consensus 125 ~~~~~~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~ 202 (224)
+|.+++.+-.-.+.|.+|-+.+ .-++...++|.-.+ .+|+|-=+.+.+.+|+-.+|+|..+...++.++-++
T Consensus 428 ~NPa~L~P~~p~d~a~ryV~am-----GGadrVl~la~ea~-~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQL 499 (655)
T COG2015 428 GNPANLHPLPPVDSAKRYVEAM-----GGADRVLELAREAF-DKGDYRWAAELLNQAVFADPGNKAARELQADALEQL 499 (655)
T ss_pred CCccccCCCChhHhHHHHHHHh-----ccHHHHHHHHHHHH-hcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHh
Confidence 3444454444444444433322 22344455666566 589999999999999999999999999999887654
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.63 E-value=45 Score=31.95 Aligned_cols=26 Identities=4% Similarity=-0.073 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027404 156 VLANYAKFLKEIRGDFVKAEEYCGRAI 182 (224)
Q Consensus 156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL 182 (224)
+++.+|-++. ..++|.+|++.|...+
T Consensus 166 ~~YyvGFayl-MlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 166 TYYYVGFAYL-MLRRYADAIRTFSQIL 191 (404)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3344443333 3555555555555554
No 420
>PRK11619 lytic murein transglycosylase; Provisional
Probab=44.06 E-value=1.3e+02 Score=30.46 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=35.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
..+|.+.+..++...-....+....++.+|..+.. .|+.++|..+|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~-~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-QGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHH-cCCHHHHHHHHHHHhc
Confidence 35677666666666444344566677778887655 5789999999998744
No 421
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=43.86 E-value=1.6e+02 Score=26.84 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHH---HHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 027404 133 GKESESMDVYYQEMIKAYPE--DALVLANYAKFL---KEIRGDF---VKAEEYCGRAILAKPGDGNVLSMYGDLIWIN-- 202 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~--na~~l~nlA~~l---~e~~Gd~---eeAe~~~erAL~ldP~da~al~~lG~ll~~~-- 202 (224)
.++|++=.+.|.+..+...+ +.+..+.++... +...-.. ..-++.++.=++..|+...++..+|.++...
T Consensus 13 ~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw 92 (277)
T PF13226_consen 13 ARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVHRAW 92 (277)
T ss_pred hCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 36777777788887765443 222222222111 1000011 1356677777889999988888888654321
Q ss_pred -------------------cCChHHHHHHHHHHHHhCCCC
Q 027404 203 -------------------HKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 203 -------------------~gd~eeA~~~ferAL~l~P~d 223 (224)
+...+.|+.++.+|+.++|..
T Consensus 93 ~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~ 132 (277)
T PF13226_consen 93 DIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRP 132 (277)
T ss_pred HHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 124678999999999999974
No 422
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.37 E-value=56 Score=31.79 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHH--HHCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 027404 134 KESESMDVYYQEMI--KAYPEDAL--VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190 (224)
Q Consensus 134 ~d~e~A~~~yerAL--e~dP~na~--~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~ 190 (224)
+.+++|...--+.. +.+.++-+ .++.+|++-. .+.+|..|.+||-+|+...|++..
T Consensus 223 ~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIka-iqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 223 KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKA-IQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHH-hhcchhHHHHHHHHHHHhCcchhh
Confidence 45666666555554 22333433 4445677765 789999999999999999998644
No 423
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.23 E-value=20 Score=26.25 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 027404 130 GDSGKESESMDVYYQEMIKA 149 (224)
Q Consensus 130 ~~~~~d~e~A~~~yerALe~ 149 (224)
.|..+++++|..+|+.||+.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 46678899999999988875
No 424
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.00 E-value=2e+02 Score=30.51 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027404 133 GKESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d 188 (224)
.++.+.|+++.+.|+..=|.+. .++.+++.+.. ..|++++|..+..++.+.+-.+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~-~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH-IRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH-HhchHHHHHHHHHHHHHHHHHc
Confidence 3789999999999999988875 56667787776 7999999999999999885443
No 425
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=42.70 E-value=1.4e+02 Score=24.44 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H-H-------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-------G-N-------VLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-------a-~-------al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
+.++|.... ..+++-.|+-+|++|+.+.-+- . + ...++|.+ |...||.+=.+.|++-|-+
T Consensus 4 htllAd~a~-~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~F-WR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAF-KEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADF-WRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHh-hcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHH-HHHcCChHHHHHHHHHHHH
Confidence 455666655 5788889999999998653211 1 1 13466654 6778898989999986543
No 426
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=41.60 E-value=2.4e+02 Score=29.77 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHHcCChHHHHHHHH
Q 027404 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI--WINHKDAPRAKSYFD 214 (224)
Q Consensus 137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll--~~~~gd~eeA~~~fe 214 (224)
++-+.-++.-+.+++-+...+..|=.++. ..|++++-...-+++.++.|..+.+|.....-. ........+++..|+
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llr-k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLR-KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 44455677777778877777777766676 689999999999999999999999987654322 222356788999999
Q ss_pred HHHH
Q 027404 215 RAVH 218 (224)
Q Consensus 215 rAL~ 218 (224)
+|+.
T Consensus 175 kal~ 178 (881)
T KOG0128|consen 175 KALG 178 (881)
T ss_pred HHhc
Confidence 9874
No 427
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=41.46 E-value=1.3e+02 Score=25.05 Aligned_cols=84 Identities=10% Similarity=-0.020 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404 129 DGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (224)
Q Consensus 129 ~~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee 208 (224)
+...+++..+-..+|-+. +-.+-.+-..+.. +. .+|+-++-.+.+....+-+..+|..+..+|.+|-. -|+..+
T Consensus 65 Dis~C~NlKrVi~C~~~~---n~~se~vD~ALd~-lv-~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~ 138 (161)
T PF09205_consen 65 DISKCGNLKRVIECYAKR---NKLSEYVDLALDI-LV-KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTRE 138 (161)
T ss_dssp -GGG-S-THHHHHHHHHT---T---HHHHHHHHH-HH-HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHH
T ss_pred CchhhcchHHHHHHHHHh---cchHHHHHHHHHH-HH-HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhh
Confidence 334556777777776543 2223233333332 22 57777777777777776556678888888888765 467888
Q ss_pred HHHHHHHHHH
Q 027404 209 AKSYFDRAVH 218 (224)
Q Consensus 209 A~~~ferAL~ 218 (224)
|.+.+++|-+
T Consensus 139 ~~ell~~ACe 148 (161)
T PF09205_consen 139 ANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 428
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.34 E-value=67 Score=30.77 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 168 ~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
..+..+-++....|+++||..+.+|..++.-- ..-..+|+..|++|++.
T Consensus 197 ERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE---a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 197 ERNPPARIKAAYQALEINNECATAYVLLAEEE---ATTIVDAERLFKQALKA 245 (556)
T ss_pred hcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh---hhhHHHHHHHHHHHHHH
Confidence 34566677778889999999999988776432 12477899999999875
No 429
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=40.98 E-value=38 Score=32.44 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLK 165 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~ 165 (224)
.-+..|+.|+++|.. -.+|+.|.++|-++.
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I 361 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMI 361 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHh
Confidence 346678888888876 556777777776654
No 430
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=40.83 E-value=1.4e+02 Score=21.81 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027404 131 DSGKESESMDVYYQEMIK 148 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe 148 (224)
|..+++.+|+.+|+.||+
T Consensus 17 D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 17 EKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 344555555555555543
No 431
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.81 E-value=1.9e+02 Score=31.77 Aligned_cols=60 Identities=18% Similarity=0.012 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 152 ~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
+.+.+|..+|.+.. ..+...+|++.|-|| +|+..|...-.+. ...+.+++=+.|+..|.+
T Consensus 1102 n~p~vWsqlakAQL-~~~~v~dAieSyika-----dDps~y~eVi~~a-~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQL-QGGLVKDAIESYIKA-----DDPSNYLEVIDVA-SRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred CChHHHHHHHHHHH-hcCchHHHHHHHHhc-----CCcHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 45677777777765 467777777777554 3444444333322 234567777766666554
No 432
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.73 E-value=1.8e+02 Score=29.82 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH------------HHHHHcCChHHH
Q 027404 150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGD------------LIWINHKDAPRA 209 (224)
Q Consensus 150 dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--------dP~da~al~~lG~------------ll~~~~gd~eeA 209 (224)
..++..-|..||.+.. ..+++..|.+||.+|... .-++++.+..+|. +.+-+.|+++++
T Consensus 662 e~~s~~Kw~~Lg~~al-~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAAL-SAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hhcchHHHHHHHHHHh-hcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHH
Confidence 3455666777777765 578888899998888643 2345554433332 111234677777
Q ss_pred HHHHHH
Q 027404 210 KSYFDR 215 (224)
Q Consensus 210 ~~~fer 215 (224)
++.+..
T Consensus 741 ~~lLi~ 746 (794)
T KOG0276|consen 741 LELLIS 746 (794)
T ss_pred HHHHHh
Confidence 776654
No 433
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=39.94 E-value=90 Score=25.64 Aligned_cols=31 Identities=13% Similarity=-0.051 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDL 198 (224)
Q Consensus 168 ~Gd~eeAe~~~erAL~ldP~da~al~~lG~l 198 (224)
.-+.+.|++.|+..++..|+|..++..|-..
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~ 119 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQN 119 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHc
Confidence 4577899999999999999999987655433
No 434
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=39.90 E-value=75 Score=29.16 Aligned_cols=46 Identities=11% Similarity=-0.002 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGR 180 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~er 180 (224)
..+-+|+..++.++..+|.|..+...+..++. ..|-...|.+.|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~-~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYS-LLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHh
Confidence 46778999999999999999999999998886 68999999998864
No 435
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.49 E-value=65 Score=31.34 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHH--HhCCCC--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 168 RGDFVKAEEYCGRAI--LAKPGD--GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 168 ~Gd~eeAe~~~erAL--~ldP~d--a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
.+.|+.|.....++. +.+.++ +..++++|.+- ..+.+|..|.++|-+|++..|++
T Consensus 222 n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIk-aiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 222 NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIK-AIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHH-HhhcchhHHHHHHHHHHHhCcch
Confidence 456777777666665 222233 33455567654 44679999999999999999964
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.28 E-value=2.6e+02 Score=24.30 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
......++++.+|++.-... ..+...+|..++ ..|++++|+++|+++...
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASS 207 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Confidence 34456788888888764432 245567888887 699999999999999654
No 437
>PF13041 PPR_2: PPR repeat family
Probab=38.39 E-value=91 Score=19.74 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
..|..+=..+. +.|++++|.+.|++-.+.
T Consensus 4 ~~yn~li~~~~-~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYC-KAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHH-HCcCHHHHHHHHHHHHHc
Confidence 34444444455 588999999999988865
No 438
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=37.57 E-value=1.8e+02 Score=22.04 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=20.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 027404 167 IRGDFVKAEEYCGRAILAKPGDGNVLS 193 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ldP~da~al~ 193 (224)
..||+++|++.+.++-+..++.+..+.
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L 97 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYL 97 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 479999999999999777554444443
No 439
>PF13830 DUF4192: Domain of unknown function (DUF4192)
Probab=37.20 E-value=1.9e+02 Score=26.22 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 027404 136 SESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV 191 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~n--a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a 191 (224)
-..++..+....+.-|.. +.++.-+|.+.+ ..|+-..|-..+++|++.+|+|..+
T Consensus 254 a~~a~~lw~~~~r~~~~~~ra~~l~l~a~~a~-~~g~g~~A~~al~~a~~~~p~~~la 310 (324)
T PF13830_consen 254 AQAAERLWRALARRLPGPWRAAALALLAWAAW-LRGDGALAGVALDRALEADPDHSLA 310 (324)
T ss_pred chHHHHHHHHHHHhcCCccchHHHHHHHHHHH-hcCCchHHHHHHHHHHhhCCCCcHH
Confidence 345666666666665554 255555565565 4677777777777777777776544
No 440
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=36.82 E-value=19 Score=22.56 Aligned_cols=29 Identities=17% Similarity=-0.034 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Q 027404 155 LVLANYAKFLKEIRG---DFVKAEEYCGRAILA 184 (224)
Q Consensus 155 ~~l~nlA~~l~e~~G---d~eeAe~~~erAL~l 184 (224)
.+.++||+++.. .. |..+++..++..++.
T Consensus 2 qt~FnyAw~Lv~-S~~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 2 QTQFNYAWGLVK-SNNREDQQEGIALLEELYRD 33 (35)
T ss_dssp HHHHHHHHHHHH-SSSHHHHHHHHHHHHHHCCC
T ss_pred cchhHHHHHHhc-CCCHHHHHHHHHHHHHHHhc
Confidence 456677776652 32 334566666555443
No 441
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=36.07 E-value=1.7e+02 Score=28.76 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL---AKPGDGNVLSMYGDLIWINHKDAPRAK 210 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~---ldP~da~al~~lG~ll~~~~gd~eeA~ 210 (224)
++.+.|..+-.+.|-+||.+..-+.--|.+.. +..+|.+|.+.+.-|.- +.-.+..-...+-.+||... .++|+
T Consensus 242 rkpdlALnh~hrsI~lnP~~frnHLrqAavfR-~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqam--iEeAi 318 (569)
T PF15015_consen 242 RKPDLALNHSHRSINLNPSYFRNHLRQAAVFR-RLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAM--IEEAI 318 (569)
T ss_pred CCCchHHHHHhhhhhcCcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHH--HHHHH
Confidence 56678999999999999999887777776665 67889888887776653 33334444444555666543 55555
Q ss_pred H
Q 027404 211 S 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 319 T 319 (569)
T PF15015_consen 319 T 319 (569)
T ss_pred h
Confidence 4
No 442
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=35.97 E-value=2.6e+02 Score=23.39 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK 185 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld 185 (224)
+..++-.+.++....-+-.+|..+..+|.+|. ..|+..+|.+.+++|.+..
T Consensus 100 ~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~-klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKNEEINPEFLVKIANAYK-KLGNTREANELLKEACEKG 150 (161)
T ss_dssp T-HHHHHHHHHHH-----S-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-HhcchhhHHHHHHHHHHhc
Confidence 45566666666666666778999999999987 7999999999999998753
No 443
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=35.83 E-value=66 Score=17.64 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHHH
Q 027404 168 RGDFVKAEEYCGRA 181 (224)
Q Consensus 168 ~Gd~eeAe~~~erA 181 (224)
.|++++|++.|++-
T Consensus 13 ~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 13 MGQFEEALEVFDEM 26 (31)
T ss_pred cchHHHHHHHHHHH
Confidence 44455555544443
No 444
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=34.80 E-value=1.7e+02 Score=29.45 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAI-LAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL-~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe 214 (224)
.+.++-|+.+|-+..++...-|..+|.......++...|...+.+.- .++|.-..-+..+..-+....+++..|..+|.
T Consensus 44 ~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~ 123 (604)
T COG3107 44 NASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLA 123 (604)
T ss_pred chhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHh
Confidence 35677788888887777665555554433336899999999888876 34433222222222222233466788887776
Q ss_pred HH
Q 027404 215 RA 216 (224)
Q Consensus 215 rA 216 (224)
+.
T Consensus 124 ~~ 125 (604)
T COG3107 124 KL 125 (604)
T ss_pred hc
Confidence 43
No 445
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=33.99 E-value=64 Score=34.00 Aligned_cols=76 Identities=16% Similarity=0.009 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHHcCChHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS----MYGDLIWINHKDAPRAK 210 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~----~lG~ll~~~~gd~eeA~ 210 (224)
.++-|..+-+- .....-++++..||.++. ..|++++|-++|-.||+++..+-.... .+-.-....+...++|+
T Consensus 978 afd~afdlari--~~k~k~~~vhlk~a~~le-degk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av 1054 (1636)
T KOG3616|consen 978 AFDFAFDLARI--AAKDKMGEVHLKLAMFLE-DEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAV 1054 (1636)
T ss_pred chhhHHHHHHH--hhhccCccchhHHhhhhh-hccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHH
Confidence 34444444332 233445789999999886 699999999999999999875533211 01111123344677777
Q ss_pred HHH
Q 027404 211 SYF 213 (224)
Q Consensus 211 ~~f 213 (224)
..|
T Consensus 1055 ~mf 1057 (1636)
T KOG3616|consen 1055 EMF 1057 (1636)
T ss_pred HHh
Confidence 766
No 446
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=33.98 E-value=74 Score=30.69 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=30.4
Q ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027404 143 YQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAI 182 (224)
Q Consensus 143 yerALe~--dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL 182 (224)
++.|+++ ..+++..|..+|.... .+|+++-|++||+++=
T Consensus 334 L~~A~~~a~~~~~~~~W~~Lg~~AL-~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 334 LDIALEIAKELDDPEKWKQLGDEAL-RQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHCCCCSTHHHHHHHHHHHH-HTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH-HcCCHHHHHHHHHhhc
Confidence 4445443 3457889999999887 6999999999999863
No 447
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=33.95 E-value=2e+02 Score=29.01 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGD------FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK 204 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e---~~Gd------~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g 204 (224)
|..++|...+-..-++.|+-......|-.+... ...| .-+-+.|.++.+-.+..++.++-..+.-..++ .
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 790 (831)
T PRK15180 712 GRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL-R 790 (831)
T ss_pred ccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH-H
Confidence 677777777777777888877777666555431 1111 11456677777778888887775443333333 5
Q ss_pred ChHHHHHHHHHHHHhC
Q 027404 205 DAPRAKSYFDRAVHSA 220 (224)
Q Consensus 205 d~eeA~~~ferAL~l~ 220 (224)
+|..|++|+++.-+.+
T Consensus 791 ~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 791 DYTQALQYWQRLEKVN 806 (831)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8999999999987765
No 448
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=33.38 E-value=1e+02 Score=17.88 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404 174 AEEYCGRAILAKPGDGNVLSMYGDL 198 (224)
Q Consensus 174 Ae~~~erAL~ldP~da~al~~lG~l 198 (224)
.+++..++|..+|.+..+|...-.+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~l 26 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWL 26 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHH
Confidence 4566677777777777777654433
No 449
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.14 E-value=2.4e+02 Score=26.90 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH--HHHHHHHcCChHHHHHHHHH
Q 027404 160 YAKFLKEIRGDFVKAEEYCGRAILAKPGD-----GNVLSMY--GDLIWINHKDAPRAKSYFDR 215 (224)
Q Consensus 160 lA~~l~e~~Gd~eeAe~~~erAL~ldP~d-----a~al~~l--G~ll~~~~gd~eeA~~~fer 215 (224)
++..++ ..++|..|.+.|+.++...+.. ...+..+ |...|+.. ++++|..++++
T Consensus 136 ~~r~l~-n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAI-NAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRF-EHEEALDYLND 196 (380)
T ss_pred HHHHHH-HhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHcc-CHHHHHHHHhh
Confidence 444555 5899999999999999875422 2222333 33456654 79999999983
No 450
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.10 E-value=1e+02 Score=23.39 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD 170 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd 170 (224)
|++..|++...++-+..++.+..+..-|.+.. .+||
T Consensus 73 G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~-~~gd 108 (108)
T PF07219_consen 73 GDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQ-AQGD 108 (108)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCC
Confidence 79999999999997775555555555555543 4554
No 451
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.66 E-value=1.9e+02 Score=27.64 Aligned_cols=41 Identities=22% Similarity=0.116 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG 196 (224)
.++..-|.++. +.|+.++|...|++||.+.++.++..+...
T Consensus 366 ~~h~~RadlL~-rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 366 LYHAARADLLA-RLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ccHHHHHHHHH-HhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 45555677776 799999999999999999999988765443
No 452
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.45 E-value=1.3e+02 Score=30.84 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=43.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404 140 DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (224)
Q Consensus 140 ~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l 219 (224)
+.+.++||++.++ ++-.+.++ + ..|+++.|.... ..-++..-|..||.+... .+++..|.++|.+|..+
T Consensus 627 ~g~~e~AL~~s~D-~d~rFela--l--~lgrl~iA~~la-----~e~~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 627 QGMKEQALELSTD-PDQRFELA--L--KLGRLDIAFDLA-----VEANSEVKWRQLGDAALS-AGELPLASECFLRARDL 695 (794)
T ss_pred ccchHhhhhcCCC-hhhhhhhh--h--hcCcHHHHHHHH-----HhhcchHHHHHHHHHHhh-cccchhHHHHHHhhcch
Confidence 3355666666553 34445544 2 256666665532 233556667788887654 57899999999998653
No 453
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.15 E-value=2.5e+02 Score=24.38 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=36.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~ 218 (224)
.+||++.|-++|--.|...+=|...+..+|.-++...+.-....++|+....
T Consensus 53 lr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 53 LRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 4789999999999888887777777777887665544433333366665544
No 454
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.08 E-value=1.3e+02 Score=24.50 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLK 165 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~ 165 (224)
+++.-|..+...++..||+|.++....+.++.
T Consensus 84 gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 84 GDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 68899999999999999999998888887765
No 455
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.87 E-value=1.5e+02 Score=28.14 Aligned_cols=13 Identities=8% Similarity=-0.003 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 027404 137 ESMDVYYQEMIKA 149 (224)
Q Consensus 137 e~A~~~yerALe~ 149 (224)
.+|+.+..+|++.
T Consensus 8 ~kaI~lv~kA~~e 20 (439)
T KOG0739|consen 8 QKAIDLVKKAIDE 20 (439)
T ss_pred HHHHHHHHHHhhh
Confidence 4455555555443
No 456
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=29.37 E-value=1.1e+02 Score=16.90 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHHHHH
Q 027404 168 RGDFVKAEEYCGRAI 182 (224)
Q Consensus 168 ~Gd~eeAe~~~erAL 182 (224)
.|++++|++.|.+..
T Consensus 13 ~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 13 AGRVEEALELFKEML 27 (35)
T ss_pred CCCHHHHHHHHHHHH
Confidence 455555555555443
No 457
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=29.14 E-value=1.3e+02 Score=23.96 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404 159 NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY 195 (224)
Q Consensus 159 nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l 195 (224)
.+|..+. .+|++++|..+|-+||.+-|+..+.+..|
T Consensus 68 ~lGE~L~-~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 68 QLGEQLL-AQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHH-HTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4566665 58999999999999999999877665433
No 458
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.67 E-value=1.1e+02 Score=37.00 Aligned_cols=80 Identities=9% Similarity=0.089 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---cCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCh
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI---RGD----FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA 206 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~---~Gd----~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ 206 (224)
+..++|-..|..|++++-+-+.+|...|.++.++ +.. -..|+.||-+|+... +.-.+.-.++.++|.+. +
T Consensus 2826 ~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~skaRk~iakvLwLls--~ 2902 (3550)
T KOG0889|consen 2826 GKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSSKARKLIAKVLWLLS--F 2902 (3550)
T ss_pred cCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHH--h
Confidence 5778999999999999999999999998876532 111 236888888888664 34455566778888653 4
Q ss_pred HHHHHHHHHH
Q 027404 207 PRAKSYFDRA 216 (224)
Q Consensus 207 eeA~~~ferA 216 (224)
++|..-.-++
T Consensus 2903 dda~~~l~~~ 2912 (3550)
T KOG0889|consen 2903 DDSLGTLGDV 2912 (3550)
T ss_pred ccccchHHHH
Confidence 5554444333
No 459
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=26.37 E-value=1.6e+02 Score=29.70 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKA-----YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 134 ~d~e~A~~~yerALe~-----dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
.+...++.+|.+||.. +-.+..-|..+|.+++ +++++.+|+++.-.|-.
T Consensus 293 ~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~y-R~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 293 PGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYY-RHKRYREALRSWAEAAD 346 (618)
T ss_dssp TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHH-HHHHHHHHHHHHHHHHH
Confidence 3445678899999875 4444566777788888 79999999988877754
No 460
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.08 E-value=4.1e+02 Score=25.31 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=8.5
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027404 131 DSGKESESMDVYYQEMIK 148 (224)
Q Consensus 131 ~~~~d~e~A~~~yerALe 148 (224)
|..++|++|..+|+.|++
T Consensus 21 D~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 21 DNAKNYEEALRLYQNALE 38 (439)
T ss_pred cchhchHHHHHHHHHHHH
Confidence 344445555555544443
No 461
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.04 E-value=2.4e+02 Score=26.50 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 129 DGDSGKESESMDVYYQEMIKAYPEDALVLA----NYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 129 ~~~~~~d~e~A~~~yerALe~dP~na~~l~----nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
.+....+.++|+..|++.+++.|.-+++-+ .+-.+.+ +++++++-..+|++.+.
T Consensus 36 K~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f-~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 36 KGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINF-RLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHH
Confidence 445556899999999999999998875433 3444455 57888888888877763
No 462
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=25.91 E-value=3e+02 Score=26.29 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCC--CCHHHH-HHHHHHHHHHcCChHHHHHH
Q 027404 138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCG--RAILAKP--GDGNVL-SMYGDLIWINHKDAPRAKSY 212 (224)
Q Consensus 138 ~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~e--rAL~ldP--~da~al-~~lG~ll~~~~gd~eeA~~~ 212 (224)
.-..++++-...-|...++++.||.++++ .|+|..|-.|+= |++--+| ++..++ -.+|.-++. .+.+-|.+-
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqye-CGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~--qnWd~A~ed 189 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYE-CGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILT--QNWDGALED 189 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH--hhHHHHHHH
Confidence 33445555556677788999999999995 899998877654 5554333 233333 234433322 357777776
Q ss_pred HHHHH
Q 027404 213 FDRAV 217 (224)
Q Consensus 213 ferAL 217 (224)
+-+.-
T Consensus 190 L~rLr 194 (432)
T KOG2758|consen 190 LTRLR 194 (432)
T ss_pred HHHHH
Confidence 65543
No 463
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.53 E-value=1.2e+02 Score=31.67 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEM 146 (224)
Q Consensus 134 ~d~e~A~~~yerA 146 (224)
|++++|++.|..|
T Consensus 748 g~feeaek~yld~ 760 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDA 760 (1189)
T ss_pred cchhHhhhhhhcc
Confidence 6788888888655
No 464
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.24 E-value=7.1e+02 Score=29.58 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHH
Q 027404 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-----------------GNVLSMY 195 (224)
Q Consensus 133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-----------------a~al~~l 195 (224)
.|.++.|..+.-+|.+.. -+++....|..+. .+||...|+.+++.-+..+-.+ ..+...+
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~ 1759 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLW-QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKI 1759 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHH
Confidence 478999999999999887 5788889999998 5999999999999999654333 1122233
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHHhCCC
Q 027404 196 GDLIWINHKD--APRAKSYFDRAVHSAPD 222 (224)
Q Consensus 196 G~ll~~~~gd--~eeA~~~ferAL~l~P~ 222 (224)
+..+-+ .++ ..+-+.+|..|.++.|.
T Consensus 1760 ~~~~~e-s~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1760 TKYLEE-SGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHHHHH-hcchhHHHHHHHHHHHHHHccc
Confidence 332222 233 34566789999998884
No 465
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.20 E-value=1.6e+02 Score=28.73 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404 170 DFVKAEEYCGRAILAKPGDGNV-LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (224)
Q Consensus 170 d~eeAe~~~erAL~ldP~da~a-l~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d 223 (224)
..++|...++-+|..|-....+ +-.+|+.++. .|+...-.++.++.-++.|.|
T Consensus 370 el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~-~g~rk~p~e~~~~Ie~lt~~D 423 (472)
T KOG2067|consen 370 ELERAKTQLKSMLLMNLESRPVAFEDVGRQVLT-TGERKPPDEFIKKIEQLTPSD 423 (472)
T ss_pred HHHHHHHHHHHHHHhcccccchhHHHHhHHHHh-ccCcCCHHHHHHHHHhcCHHH
Confidence 5678888899888888776554 4467776654 355566666776666666654
No 466
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=24.15 E-value=2.7e+02 Score=28.91 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCC
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-DGNVLSMYGDLIWINH--KDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~-da~al~~lG~ll~~~~--gd~eeA~~~ferAL~l~P 221 (224)
-+|...|.++. +.+++..|..-|.+|+++.-. -+++...+-+.+ +-. .+.+.-.++|+...+-.|
T Consensus 588 ~aW~AWGlA~L-k~e~~aaAR~KFkqafklkgedipdvi~diin~i-eGgpp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 588 GAWHAWGLACL-KAENLAAAREKFKQAFKLKGEDIPDVIFDIINLI-EGGPPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred cHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhh-cCCCcchHHHHHHHHHHhccCCc
Confidence 46666676665 577888888888888876543 355555443322 211 245666666666655544
No 467
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=23.23 E-value=1.2e+02 Score=28.89 Aligned_cols=11 Identities=45% Similarity=0.978 Sum_probs=5.3
Q ss_pred CCCCCCC-Cccc
Q 027404 84 GGGEDGQ-GEFS 94 (224)
Q Consensus 84 ~~~~~~~-~~~~ 94 (224)
.|+.|++ +.|.
T Consensus 332 ~ggrgggkg~f~ 343 (465)
T KOG3973|consen 332 QGGRGGGKGTFD 343 (465)
T ss_pred CCCcCCCCCCCc
Confidence 3343444 5684
No 468
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=23.16 E-value=1.1e+02 Score=26.47 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 027404 136 SESMDVYYQEMIKAYPEDAL-VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV 191 (224)
Q Consensus 136 ~e~A~~~yerALe~dP~na~-~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a 191 (224)
...|...|.+||..+|-++. ++..+=.++...+.|---.+.+|+.+...+|..+..
T Consensus 113 kr~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~~A~~ 169 (193)
T PF12925_consen 113 KRAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPEEAAQ 169 (193)
T ss_dssp HHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHH
Confidence 34566777777777666653 222221222212344555667777777777755443
No 469
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=22.57 E-value=1.7e+02 Score=25.38 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404 169 GDFVKAEEYCGRAILAKPGDGNV-LSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (224)
Q Consensus 169 Gd~eeAe~~~erAL~ldP~da~a-l~~lG~ll~~~~gd~eeA~~~ferAL~l~P 221 (224)
.+...|..+|.+||..+|-++.- +..+-.++....+|---.+..|+.....+|
T Consensus 111 erkr~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp 164 (193)
T PF12925_consen 111 ERKRAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDP 164 (193)
T ss_dssp HHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCH
Confidence 34558999999999987766553 333323322223445556667776666665
No 470
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.57 E-value=1.9e+02 Score=31.06 Aligned_cols=43 Identities=16% Similarity=0.039 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAI 182 (224)
Q Consensus 134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL 182 (224)
++++.|.++..+. +++++|..||.... .+|+.+-|+.+|++.=
T Consensus 657 gnle~ale~akkl-----dd~d~w~rLge~Al-~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 657 GNLEVALEAAKKL-----DDKDVWERLGEEAL-RQGNHQIAEMCYQRTK 699 (1202)
T ss_pred CCHHHHHHHHHhc-----CcHHHHHHHHHHHH-HhcchHHHHHHHHHhh
Confidence 5666665555443 78899999998876 7999999999998753
No 471
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=22.53 E-value=1.2e+02 Score=26.81 Aligned_cols=20 Identities=15% Similarity=-0.067 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 027404 169 GDFVKAEEYCGRAILAKPGD 188 (224)
Q Consensus 169 Gd~eeAe~~~erAL~ldP~d 188 (224)
+++..|+.+|++|++++|+-
T Consensus 192 ~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred ccHHHHHHHHHHHHHhCCCC
Confidence 56778999999999999864
No 472
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=22.36 E-value=5.8e+02 Score=24.36 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHH----CCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Q 027404 134 KESESMDVYYQEMIKA----YPEDAL--VLANYAKFLKEIRGDFVKAEEYCGRAIL-------AKPGDGNVLSMYGDLIW 200 (224)
Q Consensus 134 ~d~e~A~~~yerALe~----dP~na~--~l~nlA~~l~e~~Gd~eeAe~~~erAL~-------ldP~da~al~~lG~ll~ 200 (224)
.+.++|.+++++.++. +--++. .....|.++. ..||.+++.+.+..+-. +.|+-..-++.++..|+
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L-~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYy 167 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKL-EINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYY 167 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHH
Confidence 4778999999998864 221343 3345677666 58999988888776544 34433334555666666
Q ss_pred HHcCChHHHHHHHHHHHH
Q 027404 201 INHKDAPRAKSYFDRAVH 218 (224)
Q Consensus 201 ~~~gd~eeA~~~ferAL~ 218 (224)
+..+++. .||+.|+.
T Consensus 168 k~~~d~a---~yYr~~L~ 182 (380)
T KOG2908|consen 168 KKIGDFA---SYYRHALL 182 (380)
T ss_pred HHHHhHH---HHHHHHHH
Confidence 5555544 45555543
No 473
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.27 E-value=4e+02 Score=25.42 Aligned_cols=46 Identities=17% Similarity=0.036 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404 138 SMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (224)
Q Consensus 138 ~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l 184 (224)
+-++-+.++|+-.-.| .+++.+.|.+++ +.||.+.|++.+++....
T Consensus 82 eki~eld~~iedaeenlGE~ev~ea~~~kaeYyc-qigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGESEVREAMLRKAEYYC-QIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence 3344455555433333 488999999888 699999999998877754
No 474
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=21.98 E-value=6.5e+02 Score=25.59 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 140 DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 140 ~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
-..+++.++.+=++...-..+|..+ + +.+.++|..+|.+|+.
T Consensus 118 ~~lWer~ve~dfnDvv~~ReLa~~y-E-kik~sk~a~~f~Ka~y 159 (711)
T COG1747 118 YSLWERLVEYDFNDVVIGRELADKY-E-KIKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHH-H-HhchhhHHHHHHHHHH
Confidence 3477888888888888888888765 3 5888899999998884
No 475
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.49 E-value=1.9e+02 Score=27.74 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHH
Q 027404 160 YAKFLKEIRGDFVKAEEYCGRAILAKP--------GDGNVLSMYGDLIWIN 202 (224)
Q Consensus 160 lA~~l~e~~Gd~eeAe~~~erAL~ldP--------~da~al~~lG~ll~~~ 202 (224)
.|+-.+ +++++++|...|..|..+.- +...+++.||..++..
T Consensus 47 ~G~~~~-~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLel 96 (400)
T KOG4563|consen 47 AGRRAL-CNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLEL 96 (400)
T ss_pred hhhHHH-hcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444 57788888887777775532 3456777777776654
No 476
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=21.20 E-value=1.7e+02 Score=32.08 Aligned_cols=81 Identities=19% Similarity=0.058 Sum_probs=57.2
Q ss_pred HHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCChH
Q 027404 137 ESMDVYYQ-EMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGDLIWINHKDAP 207 (224)
Q Consensus 137 e~A~~~ye-rALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--------dP~da~al~~lG~ll~~~~gd~e 207 (224)
.++.-++. ..-...|..+..+..+|.+++ ..+++++|+.+..+|.-+ .|+....+.+++.+.+. .+...
T Consensus 955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~-~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~~ 1032 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEVASKYRSLAKLSN-RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNLS 1032 (1236)
T ss_pred hhhhhHHHHhhhhcchhHHHHHHHHHHHHh-hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCcc
Confidence 34444666 555678899999999999887 699999999999888743 34555566666654443 34566
Q ss_pred HHHHHHHHHHHh
Q 027404 208 RAKSYFDRAVHS 219 (224)
Q Consensus 208 eA~~~ferAL~l 219 (224)
.|...+-+|..+
T Consensus 1033 ~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1033 GALKSLNRALKL 1044 (1236)
T ss_pred chhhhHHHHHHh
Confidence 677777777654
No 477
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.15 E-value=5.6e+02 Score=22.35 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404 135 ESESMDVYYQEMIKAYPEDA-------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199 (224)
Q Consensus 135 d~e~A~~~yerALe~dP~na-------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll 199 (224)
-++.|.-.++..-+-.|..- .+.--.|.+.+...|.+++|++.++|.+. +|+.......|..++
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 45667777766655444321 11222233333468999999999999998 888877776677655
No 478
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.00 E-value=1.1e+02 Score=32.11 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404 155 LVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (224)
Q Consensus 155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ 183 (224)
+++..||..++ .+|++++|..+|-++|.
T Consensus 369 ~i~~kYgd~Ly-~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 369 EIHRKYGDYLY-GKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHcc
Confidence 78889999999 69999999999999995
No 479
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.49 E-value=4.4e+02 Score=29.13 Aligned_cols=47 Identities=21% Similarity=0.148 Sum_probs=36.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404 164 LKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA 216 (224)
Q Consensus 164 l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferA 216 (224)
+.+.-+..++|.++.+|. +.+.+|..+|.+.++ ++...+|++.|=+|
T Consensus 1084 Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~-~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1084 LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQ-GGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHh-cCchHHHHHHHHhc
Confidence 334567788888777664 678999999998765 67899999988655
No 480
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.44 E-value=3.2e+02 Score=23.90 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027404 150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW 200 (224)
Q Consensus 150 dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~ 200 (224)
+|--..+.-.||...+ +.||+.+|...|.+... |.+-+....+.+.++.
T Consensus 163 n~mR~sArEALglAa~-kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 163 NPMRHSAREALGLAAY-KAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred ChhHHHHHHHHhHHHH-hccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 3333455556777777 58999999999999886 4455555445555443
No 481
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=20.30 E-value=3.5e+02 Score=20.95 Aligned_cols=48 Identities=15% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHH-HCCCCHHHHHH-----HHHHHHHHcCCHHHHHHHHHHHH
Q 027404 133 GKESESMDVYYQEMIK-AYPEDALVLAN-----YAKFLKEIRGDFVKAEEYCGRAI 182 (224)
Q Consensus 133 ~~d~e~A~~~yerALe-~dP~na~~l~n-----lA~~l~e~~Gd~eeAe~~~erAL 182 (224)
.|+++.|+++.++-.. +...+..+.+. +-.++ +.++..+|++|.++-+
T Consensus 14 ~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell--~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 14 NGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELL--REGDIMEAIEYARKHL 67 (145)
T ss_pred cCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHH--HHHhHHHHHHHHHHHh
Confidence 4788888888877631 12222222222 22222 3578889999999866
No 482
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=20.03 E-value=5.2e+02 Score=25.85 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404 169 GDFVKAEEYCGRAILAKPGDGN-VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (224)
Q Consensus 169 Gd~eeAe~~~erAL~ldP~da~-al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~ 222 (224)
.+--.|++-|..||+.+|.-+. ++..|-..+..-.++..--+.-|+..++.+|.
T Consensus 326 drrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpk 380 (615)
T KOG3540|consen 326 DRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPK 380 (615)
T ss_pred hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 4445799999999999998764 33333332222223334455566666666663
Done!