BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027405
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 358 bits (920), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/217 (79%), Positives = 188/217 (86%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGL
Sbjct: 1 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 60
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 61 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 120
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXX 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VS
Sbjct: 121 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 180
Query: 186 XXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
KYLKE N +KLYGVEPVESA+LSGGKPG
Sbjct: 181 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 217
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 358 bits (919), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/217 (79%), Positives = 188/217 (86%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 62
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXX 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VS
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 186 XXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
KYLKE N +KLYGVEPVESA+LSGGKPG
Sbjct: 183 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 357 bits (915), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 171/217 (78%), Positives = 187/217 (86%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSV DRIG+SMI+DAE+KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGL 62
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXX 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VS
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 186 XXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
KYLKE N +KLYGVEPVESA+LSGGKPG
Sbjct: 183 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 322 bits (824), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 149/215 (69%), Positives = 179/215 (83%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA +V++LIGKTP+VYLN I GCVA IAAKLE+MEPC SVKDRIGYSM+ DAE+KG I
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AFGAELVLTDPA+G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK+D V+
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+++KE NP+ ++ GVEP ES +LSGGKPG
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 126/215 (58%), Positives = 165/215 (76%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I K V++LIG+TPLVYLN++ +GC A +A K EMM+P +S+KDR Y+MI DAEEK LI
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLIT 84
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG++ LIEPTSGN GI +AFMAA KGY++++TMP+ SLERR+ + AFGAEL+LTDPA+G
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M G V+KA E+ + TPN+++LQQF NPAN ++H+ETTGPEIW+ T G++D V
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+YLK NP +K+YGVEP ES VL+GGKPG
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPG 239
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 276 bits (707), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 125/215 (58%), Positives = 164/215 (76%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I K V++LIG+TPLVYLN++ +GC A +A K EMM+P +S+ DR Y+MI DAEEK LI
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLIT 84
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG++ LIEPTSGN GI +AFMAA KGY++++TMP+ SLERR+ + AFGAEL+LTDPA+G
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M G V+KA E+ + TPN+++LQQF NPAN ++H+ETTGPEIW+ T G++D V
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+YLK NP +K+YGVEP ES VL+GGKPG
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPG 239
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 233 bits (594), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 149/215 (69%), Gaps = 1/215 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+D+T+LIG+TPLV L R+ DG VA I AKLE P +SVKDRIG +M+ AE+ GLI+
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P +++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+GAEL+LT A G
Sbjct: 66 P-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK+D +V+
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+ +KE P + VEP S VLSGG+ G
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 148/215 (68%), Gaps = 1/215 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+D+T+LIG+TPLV L R+ DG VA I AKLE P +SV DRIG +M+ AE+ GLI+
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLIK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P +++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+GAEL+LT A G
Sbjct: 66 P-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK+D +V+
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+ +KE P + VEP S VLSGG+ G
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 146/215 (67%), Gaps = 1/215 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+++T+LIG TPLV L R+ DG A + AKLE P S+KDRIG +MI AE+ GLI+
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P +++++EPTSGNTGI LA ++AA+GY+ ++TMP +MS+ERRM+L A+GAELVLT A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GA+ KAEE+ ++ QQFENPANP +H TT E+W+ T GK+D VS
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+ +K+ P + VEP S VLSGG+ G
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKG 220
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 220 bits (560), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 145/215 (67%), Gaps = 1/215 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+++ +LIG TPLV L R+ DG A + AKLE P S+KDRIG +MI AE+ GLI+
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P +++++EPTSGNTGI LA ++AA+GY+ ++TMP +MS+ERRM+L A+GAELVLT A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GA+ KAEE+ ++ QQFENPANP +H TT E+W+ T GK+D VS
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+ +K+ P + VEP S VLSGG+ G
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKG 220
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 213 bits (542), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 148/211 (70%), Gaps = 2/211 (0%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
+TELIG TP V LNRIVD A + KLE M P SSVKDRI +MI AE+ G ++PG++
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 131
+ +EPTSGNTGIGLA +AAAKGY+ ++ MP +MSLERR +L A+GAELVLT A+GM+GA
Sbjct: 68 I-VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 132 VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXX 191
+ KAEE+ + ++ QQF+N ANP+IH TTG EI + G ++DA V+
Sbjct: 127 IAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITG 185
Query: 192 XXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
K L+E P IK+Y VEP +S VLSGGKPG
Sbjct: 186 AGKVLREAYPNIKIYAVEPADSPVLSGGKPG 216
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 206 bits (524), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 145/208 (69%), Gaps = 2/208 (0%)
Query: 16 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGE-SVLI 74
IGKTP+V L ++V+ +A + KLE + P S+KDR + MI DAEE+G++RPG V++
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL AFGAELVLTDP R M A ++
Sbjct: 67 EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 135 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXXK 194
A ++++ +++ QF+NPAN + HYETTGPE+++ G+IDA V +
Sbjct: 127 ALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGR 185
Query: 195 YLKEHNPEIKLYGVEPVESAVLSGGKPG 222
YLKE P +K+ VEP S VLSGGK G
Sbjct: 186 YLKERIPHVKVIAVEPARSNVLSGGKMG 213
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 203 bits (517), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/215 (51%), Positives = 147/215 (68%), Gaps = 7/215 (3%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S I +D + IG TPLV LNRI +G RI AK+E P SVK RIG +MI DAE++G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG L+EPT+GNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A
Sbjct: 58 LKPGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 126 RGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXX 184
+GMKGA+QKAEEI P Y +LQQF NPANP+IH +TTGPEIW+ T G++D +S
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 185 XXXXXXXXXKYLKEHNPEIKL--YGVEPVESAVLS 217
+Y+K + L VEP +S V++
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIA 211
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 146/215 (67%), Gaps = 7/215 (3%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S I +D + IG TPLV LNRI +G RI AK+E P SV RIG +MI DAE++G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGV 57
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG L+EPT+GNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A
Sbjct: 58 LKPGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 126 RGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXX 184
+GMKGA+QKAEEI P Y +LQQF NPANP+IH +TTGPEIW+ T G++D +S
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 185 XXXXXXXXXKYLKEHNPEIKL--YGVEPVESAVLS 217
+Y+K + L VEP +S V++
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIA 211
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 142/215 (66%), Gaps = 1/215 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+A+ + +LIG+TP +YLN++ + A++ K+E P +SVKDR+G+++ AE++G +
Sbjct: 32 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 90
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SV++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L FGAE++LT A G
Sbjct: 91 PGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 150
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
MKGAV A++I PN+ + QF N IH ETTGPEIW+ T +D ++
Sbjct: 151 MKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 210
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+ LK+ ++ VEP+ES VLSGGKPG
Sbjct: 211 TLTGVARALKKMGSHARIVAVEPMESPVLSGGKPG 245
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 140/215 (65%), Gaps = 1/215 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+A+ + +LIG+TP +YLN++ + A++ K+E P +SV DR+G+++ AE++G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLI 69
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+S+++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L FGAE++LT A G
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
MKGAV A++I PN+ + QF N IH ETTGPEIW+ T +D ++
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+ LK+ ++ VEP ES VLSGGKPG
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPG 224
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 169 bits (429), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 126/205 (61%), Gaps = 2/205 (0%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPLV L R+ + + KLE P SV DR SMI +AE++G I+PG+ VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
A E+ ++ +L QF NP NPK HY TTGPEIW+ TGG+I VS
Sbjct: 125 LALEMANRGEGK-LLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSG 218
++++E + + + G++P E + + G
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPG 208
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 126/205 (61%), Gaps = 2/205 (0%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPLV L R+ + + KLE P SVKDR SMI +AE++G I+PG+ VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+I VS
Sbjct: 125 LALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSG 218
++++E + + + G++P E + + G
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG 208
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 123/205 (60%), Gaps = 2/205 (0%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPLV L RI + I KLE P SVKDR SMI +AE++G I+PG+ VL
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
A + ++ +L QF NP NP HY TTGPEIW+ T G+I VS
Sbjct: 125 LALAMSERGEGK-LLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSG 218
++L+E + + G++P E + + G
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPG 208
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 125/205 (60%), Gaps = 2/205 (0%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPLV L R+ + + KLE P SV DR SMI +AE++G I+PG+ VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+I VS
Sbjct: 125 LALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSG 218
++++E + + + G++P E + + G
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG 208
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 134/212 (63%), Gaps = 5/212 (2%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I D + IG TPLV L G + K+E P SV RIG +M+ AE+ G +
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTLT 60
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G+ + ++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L G LVLT+ A+G
Sbjct: 61 KGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 128 MKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXX 186
MKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T GK+D +V+
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 187 XXXXXXXKYLK-EHNPEIKLYGVEPVESAVLS 217
+ +K + +I VEPVES V+S
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVIS 211
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 129/209 (61%), Gaps = 9/209 (4%)
Query: 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
LIG TP+V L D +RI KLE P SVKDR MI DAE++GL++ G ++
Sbjct: 5 LIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---IV 57
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL GAELVLT GMKGAV+K
Sbjct: 58 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 117
Query: 135 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXXK 194
A EI +T +++L QFENP N H TTGPEI K +IDA V+ +
Sbjct: 118 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 176
Query: 195 YLKE-HNPEIKLYGVEPVESAVLSGGKPG 222
LK +K+ VEP +S VLSGG+PG
Sbjct: 177 VLKGFFGNGVKIVAVEPAKSPVLSGGQPG 205
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 129/209 (61%), Gaps = 9/209 (4%)
Query: 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
LIG TP+V L D +RI KLE P SVKDR MI DAE++GL++ G ++
Sbjct: 17 LIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---IV 69
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL GAELVLT GMKGAV+K
Sbjct: 70 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 129
Query: 135 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXXK 194
A EI +T +++L QFENP N H TTGPEI K +IDA V+ +
Sbjct: 130 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 188
Query: 195 YLKE-HNPEIKLYGVEPVESAVLSGGKPG 222
LK +K+ VEP +S VLSGG+PG
Sbjct: 189 VLKGFFGNGVKIVAVEPAKSPVLSGGQPG 217
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 124/218 (56%), Gaps = 8/218 (3%)
Query: 2 VEEKSVIAKDVTELIGKTPLVYLNRI--VDGCVARIAAKLEMMEPCSSVKDRIGYSMIAD 59
+ + I ++ E+IG TPLV LN I DG + AK E + P SVKDRIGY M+ D
Sbjct: 44 IAHRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQD 103
Query: 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
AEE+GL++PG ++ IEPTSGNTGIGLA A KGY+ II MP MS E+ L GA++
Sbjct: 104 AEEQGLLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKI 162
Query: 120 VLTDPARGM----KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 175
+ T P +G + A++++ +TPNS VL Q+ N NP HY+ T EI K
Sbjct: 163 IRT-PTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNK 221
Query: 176 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVES 213
+D +V + +KE P ++ GV+P S
Sbjct: 222 VDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGS 259
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 9/216 (4%)
Query: 8 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I D+ + IG TP+V +N+I G + AK E SVKDRI MI DAE G
Sbjct: 33 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 92
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG+++ IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A GAE+V T P
Sbjct: 93 LKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT-PT 150
Query: 126 RGM----KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVS 181
+ V A ++++ PNS++L Q+ N +NP HY+TT EI + GK+D LV+
Sbjct: 151 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 210
Query: 182 XXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLS 217
+ LKE P ++ GV+P E ++L+
Sbjct: 211 SVGTGGTITGIARKLKEKCPGCRIIGVDP-EGSILA 245
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 9/216 (4%)
Query: 8 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I D+ + IG TP+V +N+I G + AK E SVKDRI MI DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG+++ IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A GAE+V T P
Sbjct: 158 LKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT-PT 215
Query: 126 RGM----KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVS 181
+ V A ++++ PNS++L Q+ N +NP HY+TT EI + GK+D LV+
Sbjct: 216 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 275
Query: 182 XXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLS 217
+ LKE P ++ GV+P E ++L+
Sbjct: 276 SVGTGGTITGIARKLKEKCPGCRIIGVDP-EGSILA 310
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 131/222 (59%), Gaps = 11/222 (4%)
Query: 8 IAKDVTELIGKTPLVYLN------RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE 61
I ++ E IG TPLV L+ RI G RI KLE P SSVKDR+G++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGT--RILVKLEYFNPMSSVKDRVGFNIVYQAI 69
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
+ G ++PG + IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AFGAEL+L
Sbjct: 70 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 128
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
T+ +GM GA+++ ++ + P Y V QF NP N H+ T EIW+ T G++D +V
Sbjct: 129 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVV 187
Query: 181 SXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
S + LKE IK+ VEP ESAVL G G
Sbjct: 188 SAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 229
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 131/222 (59%), Gaps = 11/222 (4%)
Query: 8 IAKDVTELIGKTPLVYLN------RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE 61
I ++ E IG TPLV L+ RI G RI KLE P SSVKDR+G++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGT--RILVKLEYFNPMSSVKDRVGFNIVYQAI 70
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
+ G ++PG + IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AFGAEL+L
Sbjct: 71 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 129
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
T+ +GM GA+++ ++ + P Y V QF NP N H+ T EIW+ T G++D +V
Sbjct: 130 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVV 188
Query: 181 SXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
S + LKE IK+ VEP ESAVL G G
Sbjct: 189 SAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 230
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 111/204 (54%), Gaps = 9/204 (4%)
Query: 14 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLI 66
+ +G TPLV L R+ DG R+ AKLE P S+KDR MI AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
RPG ++L EPTSGNTGI LA A KGYRLI MP + S+ERR +L +GA+++ +
Sbjct: 71 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 127 GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXX 186
G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +I V+
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 187 XXXXXXXKYLKEHNPEIKLYGVEP 210
++L+EH +K+ EP
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEP 212
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 14 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLI 66
+ +G TPLV L R+ DG R+ AKLE P S+KDR MI AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
RPG ++L EPTSGNTGI LA A KGYRLI MP + S+ERR +L +GA+++ +
Sbjct: 69 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 127 GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXX 186
G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +I V+
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 187 XXXXXXXKYLKEHNPEIKLYGVEP 210
++L+EH + + EP
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEP 210
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 14 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLI 66
+ +G TPLV L R+ DG R+ AKLE P S+ DR MI AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
RPG ++L EPTSGNTGI LA A KGYRLI MP + S+ERR +L +GA+++ +
Sbjct: 72 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 127 GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXX 186
G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +I V+
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 187 XXXXXXXKYLKEHNPEIKLYGVEP 210
++L+EH +K+ EP
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEP 213
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 17/216 (7%)
Query: 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAE---EKGLI 66
D E TPLV +R+ R+ KLE P S SVKDR +I+ EKG
Sbjct: 89 DFFERGKPTPLVR-SRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKG-- 145
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
S++ + TS N G+ L+ +A GYR + +P + +++ GA++++ A
Sbjct: 146 ----SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP 201
Query: 127 GMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIW---KGTGGKIDALVSX 182
+ + ++D +V + QF N AN + H T EI+ + G + +
Sbjct: 202 STVHLLPRV--MKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGS 259
Query: 183 XXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSG 218
YL+ +P I+ V+P + + G
Sbjct: 260 LGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG 295
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 17/216 (7%)
Query: 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAE---EKGLI 66
D E TPLV +R+ R+ KLE P S SV DR +I+ EKG
Sbjct: 89 DFFERGKPTPLVR-SRLQLPNGVRVWLKLEWYNPFSLSVADRPAVEIISRLSRRVEKG-- 145
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
S++ + TS N G+ L+ +A GYR + +P + +++ GA++++ A
Sbjct: 146 ----SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP 201
Query: 127 GMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIW---KGTGGKIDALVSX 182
+ + ++D +V + QF N AN + H T EI+ + G + +
Sbjct: 202 STVHLLPRV--MKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGS 259
Query: 183 XXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSG 218
YL+ +P I+ V+P + + G
Sbjct: 260 LGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG 295
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKG 64
++V+ V E TPL + ++ I K E +P S K R Y+M+A E+
Sbjct: 18 RAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEE- 76
Query: 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
+ V I ++GN G+AF +A G + +I MP + + + + FG E++L
Sbjct: 77 --QKAHGV-ITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
T GN G G+A+ A G +I P + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 47 SVKDRIG-YSMIADAE----EKGLIRPGE--SVLIEP--------------TSGNTGIGL 85
S+K R G Y ++ AE E GL+ + SVL+ P ++GN G+ +
Sbjct: 114 SIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSI 173
Query: 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145
M+A G+++ + M A ++ L + G +V + G+ AV++ + PN
Sbjct: 174 GIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNC 231
Query: 146 YVLQQFENPANPKIHYETTGPEI 168
+ + EN + Y G +
Sbjct: 232 FFIDD-ENSRTLFLGYAVAGQRL 253
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 38 KLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLI 97
K E+ + S K R + + L R ++V+ +SGN G L + A +G
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 98 ITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
I +P + +++ + A+GA +V +P+ + V K
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAK 140
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 55 SMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA 114
S++ DA E+ +P ++ +SGN G L + A +G I +P + +++ + A
Sbjct: 66 SLVPDALER---KP--KAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQA 120
Query: 115 FGAELVLTDPARGMKGAVQK 134
+GA +V +P+ + V K
Sbjct: 121 YGASIVYCEPSDESRENVAK 140
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 54 YSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL 113
YS++ +G ++PGESVLI SG G +A ++G R+ T+ S E+R L
Sbjct: 1657 YSLVV----RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVG---SAEKRAYLQ 1709
Query: 114 A 114
A
Sbjct: 1710 A 1710
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 47 SVKDRIG-YSMIADAE----EKGLIRPGE--SVLIEP--------------TSGNTGIGL 85
S+K R G Y ++A AE E GL+ + S L+ P ++GN G+ +
Sbjct: 116 SIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSI 175
Query: 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145
M+A G+++ + M A ++ L + G +V + G+ AV++ + PN
Sbjct: 176 GIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV--AVEEGRKAAQSDPNC 233
Query: 146 YVLQQFENPANPKIHYETTGPEI 168
+ + EN + Y G +
Sbjct: 234 FFIDD-ENSRTLFLGYSVAGQRL 255
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 18/87 (20%)
Query: 42 MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIIT 99
+ PC++ Y M+ D E+ ++PG+SV+ + N+G+G A +AAA G R I
Sbjct: 137 VNPCTA------YRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINV 185
Query: 100 M---PASMSLERRMVLLAFGAELVLTD 123
+ P L R L + GAE V+T+
Sbjct: 186 VRDRPDIQKLSDR--LKSLGAEHVITE 210
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 18/87 (20%)
Query: 42 MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIIT 99
+ PC++ Y M+ D E+ ++PG+SV+ + N+G+G A +AAA G R I
Sbjct: 150 VNPCTA------YRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINV 198
Query: 100 M---PASMSLERRMVLLAFGAELVLTD 123
+ P L R L + GAE V+T+
Sbjct: 199 VRDRPDIQKLSDR--LKSLGAEHVITE 223
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 38 KLEMMEPCSSVKDRIGYSMIADAEEKGLI------RPGESVLIEPTSGNTGIGLAFMAAA 91
K E+ + S K R + I +GLI +P ++ +SGN G L + A
Sbjct: 45 KCELFQKTGSFKIRGALNAI-----RGLIPDTLEGKP--KAVVTHSSGNHGQALTYAAKL 97
Query: 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
+G I +P + +++ + A+GA +V ++P+
Sbjct: 98 EGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPS 131
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 132
L+ +SGN G+A+ A G + ++ MP S ++ A+GAE+V D K
Sbjct: 68 LLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV--DRGVTAKNRE 125
Query: 133 QKAEEIRDKTPNSYVLQQFENP 154
+ A ++++T ++ F++P
Sbjct: 126 EVARALQEET-GYALIHPFDDP 146
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
VT L G TPL+ + I K+E + P S KDR + DA + G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA-----LAHGQR 86
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMP-ASMSLERRMVLLAFGAELVLTDPARGMKG 130
++ ++GNT A AA G + +P +++ + + GA+++ D G
Sbjct: 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID------G 140
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANP 157
E+ K + N NP
Sbjct: 141 NFDDCLELARKMAADFPTISLVNSVNP 167
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL 112
EKG +R G+ V+++ T G GL +A A G +I+T + L+R L
Sbjct: 183 EKGHLRAGDRVVVQGTGGVALFGLQ-IAKATGAEVIVTSSSREKLDRAFAL 232
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 47 SVKDRIG-YSMIADAE----EKGLIRPGE--SVLIEP--------------TSGNTGIGL 85
S+K R G Y ++ AE E GL+ + SVL+ P ++GN G+ +
Sbjct: 114 SIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSI 173
Query: 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145
+A G+++ + A ++ L + G +V + G+ AV++ + PN
Sbjct: 174 GIXSACIGFKVTVHXSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNC 231
Query: 146 YVLQQFENPANPKIHYETTGPEI 168
+ + EN + Y G +
Sbjct: 232 FFIDD-ENSRTLFLGYAVAGQRL 253
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL 112
++ GESVL+ SG G+GLA A+ Y L I A +++VL
Sbjct: 168 VKAGESVLVHGASG--GVGLAACQIARAYGLKILGTAGTEEGQKIVL 212
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
E G + PGE VLI +G G+ +A G R+ T + S +R +L G E V
Sbjct: 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTT---AGSDAKREMLSRLGVEYV- 87
Query: 122 TDPARGMKGAVQKAEEIRDKT 142
G +V A+EI + T
Sbjct: 88 -----GDSRSVDFADEILELT 103
>pdb|2Z1T|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
pdb|2Z1U|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
In Complex With Atp
Length = 343
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 52 IGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRL---IITMPASMSLER 108
IG ++ A RPG+++LI + G+ GL ++ +G + + AS++
Sbjct: 148 IGEILVDPAPSGDRARPGDAILISGSMGDH--GLTILSQRQGLNFAADVCSDSASLNRVV 205
Query: 109 RMVLLAFGAELVLTDPARG 127
++L G VL DP RG
Sbjct: 206 EKLVLEVGDIHVLRDPTRG 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,482,397
Number of Sequences: 62578
Number of extensions: 236446
Number of successful extensions: 495
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 63
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)