Query 027405
Match_columns 224
No_of_seqs 144 out of 1194
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:28:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 6.1E-56 1.3E-60 373.3 25.4 213 10-224 3-217 (300)
2 PLN02565 cysteine synthase 100.0 2E-55 4.4E-60 380.3 27.3 218 7-224 4-221 (322)
3 PLN03013 cysteine synthase 100.0 2E-55 4.4E-60 388.7 27.0 217 8-224 113-329 (429)
4 PLN02556 cysteine synthase/L-3 100.0 6.1E-54 1.3E-58 376.4 26.1 219 6-224 47-265 (368)
5 PRK11761 cysM cysteine synthas 100.0 1E-53 2.2E-58 366.1 25.4 209 8-218 2-210 (296)
6 PLN00011 cysteine synthase 100.0 3.9E-53 8.4E-58 366.6 28.1 221 3-223 2-222 (323)
7 TIGR01136 cysKM cysteine synth 100.0 1.1E-52 2.3E-57 360.6 27.3 209 13-222 2-210 (299)
8 COG1171 IlvA Threonine dehydra 100.0 1.5E-53 3.3E-58 364.7 19.6 209 4-219 11-219 (347)
9 TIGR01138 cysM cysteine syntha 100.0 2.4E-52 5.1E-57 356.8 26.1 205 12-218 2-206 (290)
10 TIGR01139 cysK cysteine syntha 100.0 5.9E-52 1.3E-56 355.8 27.0 208 13-222 2-210 (298)
11 PRK08526 threonine dehydratase 100.0 1.5E-51 3.2E-56 365.4 22.1 206 3-217 5-210 (403)
12 PRK10717 cysteine synthase A; 100.0 1.4E-50 3.1E-55 351.8 26.1 208 7-215 2-216 (330)
13 PRK07476 eutB threonine dehydr 100.0 3.7E-51 8.1E-56 354.2 22.1 206 3-217 4-209 (322)
14 PRK08638 threonine dehydratase 100.0 6.2E-51 1.3E-55 353.8 22.2 206 3-217 12-217 (333)
15 PRK08198 threonine dehydratase 100.0 6.3E-51 1.4E-55 362.8 22.8 205 4-217 8-212 (404)
16 KOG1252 Cystathionine beta-syn 100.0 2.2E-51 4.7E-56 344.9 17.9 216 8-223 42-260 (362)
17 PLN02970 serine racemase 100.0 1.2E-50 2.6E-55 351.7 22.9 205 4-217 13-217 (328)
18 PRK12483 threonine dehydratase 100.0 1.5E-50 3.2E-55 367.1 23.7 202 9-218 28-229 (521)
19 PRK06382 threonine dehydratase 100.0 1.4E-50 3E-55 360.4 22.4 204 4-216 11-214 (406)
20 cd01561 CBS_like CBS_like: Thi 100.0 1.5E-49 3.2E-54 339.9 27.3 202 17-219 1-204 (291)
21 TIGR02991 ectoine_eutB ectoine 100.0 5.3E-50 1.1E-54 346.1 23.1 205 4-217 5-209 (317)
22 PRK06110 hypothetical protein; 100.0 3.7E-50 8.1E-55 348.0 22.0 205 4-217 7-211 (322)
23 PLN02356 phosphateglycerate ki 100.0 1.3E-49 2.9E-54 351.5 25.6 207 8-215 43-290 (423)
24 PRK07048 serine/threonine dehy 100.0 4.7E-50 1E-54 347.3 21.8 204 4-216 10-213 (321)
25 PRK08639 threonine dehydratase 100.0 6E-50 1.3E-54 357.6 20.7 206 4-217 11-221 (420)
26 PLN02550 threonine dehydratase 100.0 1.4E-49 3E-54 363.0 22.9 200 10-217 101-300 (591)
27 TIGR02079 THD1 threonine dehyd 100.0 1.2E-49 2.6E-54 354.3 22.0 207 4-218 2-211 (409)
28 PRK06608 threonine dehydratase 100.0 1.6E-49 3.5E-54 345.5 22.2 205 3-216 8-212 (338)
29 cd06447 D-Ser-dehyd D-Serine d 100.0 2.1E-49 4.6E-54 350.0 23.1 198 16-216 50-286 (404)
30 PRK07334 threonine dehydratase 100.0 1.5E-49 3.4E-54 353.5 20.9 206 4-218 9-214 (403)
31 TIGR01137 cysta_beta cystathio 100.0 5.2E-49 1.1E-53 355.2 24.4 208 9-218 2-212 (454)
32 TIGR01124 ilvA_2Cterm threonin 100.0 3.5E-49 7.5E-54 357.9 23.2 202 9-218 8-209 (499)
33 TIGR01127 ilvA_1Cterm threonin 100.0 3.7E-49 8E-54 348.9 21.6 190 19-217 1-190 (380)
34 PRK06815 hypothetical protein; 100.0 5E-49 1.1E-53 340.3 21.8 207 3-218 5-211 (317)
35 cd01562 Thr-dehyd Threonine de 100.0 6.1E-49 1.3E-53 337.8 22.0 206 3-217 2-207 (304)
36 PRK06352 threonine synthase; V 100.0 4.8E-49 1E-53 344.4 21.5 202 9-220 19-226 (351)
37 PRK08813 threonine dehydratase 100.0 1.4E-48 3.1E-53 339.1 23.3 194 4-216 25-218 (349)
38 PRK09224 threonine dehydratase 100.0 9.2E-49 2E-53 356.2 23.1 202 9-218 11-212 (504)
39 PRK02991 D-serine dehydratase; 100.0 1.2E-48 2.6E-53 348.9 23.4 199 16-217 73-310 (441)
40 cd06448 L-Ser-dehyd Serine deh 100.0 1.2E-48 2.6E-53 337.6 21.9 197 18-218 1-200 (316)
41 PRK08246 threonine dehydratase 100.0 1.6E-48 3.5E-53 336.0 22.5 201 3-218 8-208 (310)
42 KOG1250 Threonine/serine dehyd 100.0 5.3E-49 1.1E-53 335.7 19.0 204 7-218 55-258 (457)
43 TIGR02035 D_Ser_am_lyase D-ser 100.0 3.3E-48 7.2E-53 344.9 23.9 200 15-217 67-305 (431)
44 PRK06381 threonine synthase; V 100.0 5.4E-48 1.2E-52 334.2 23.9 196 14-217 11-214 (319)
45 PRK07409 threonine synthase; V 100.0 9.6E-48 2.1E-52 336.8 22.8 202 9-220 22-230 (353)
46 PRK08197 threonine synthase; V 100.0 6.7E-48 1.4E-52 342.1 21.9 198 11-217 72-278 (394)
47 PRK07591 threonine synthase; V 100.0 1.3E-47 2.8E-52 342.4 22.5 200 11-218 82-290 (421)
48 cd01563 Thr-synth_1 Threonine 100.0 1.6E-47 3.4E-52 331.9 21.3 203 5-217 7-219 (324)
49 PRK06721 threonine synthase; R 100.0 5.7E-47 1.2E-51 331.5 23.0 201 9-219 19-225 (352)
50 PRK06260 threonine synthase; V 100.0 6.6E-47 1.4E-51 336.0 21.8 198 10-217 59-265 (397)
51 PRK05638 threonine synthase; V 100.0 8.7E-47 1.9E-51 339.3 22.4 195 11-217 59-259 (442)
52 PRK06450 threonine synthase; V 100.0 1.5E-46 3.2E-51 326.7 22.7 186 11-217 51-243 (338)
53 PLN02569 threonine synthase 100.0 2.9E-46 6.2E-51 337.0 23.2 202 11-217 126-337 (484)
54 cd00640 Trp-synth-beta_II Tryp 100.0 2.3E-45 5E-50 306.4 24.3 187 19-210 1-188 (244)
55 PRK08206 diaminopropionate amm 100.0 7.6E-46 1.7E-50 328.8 21.8 209 5-217 29-271 (399)
56 PRK08329 threonine synthase; V 100.0 1.4E-45 3E-50 322.2 22.7 190 12-218 58-253 (347)
57 KOG1251 Serine racemase [Signa 100.0 3.5E-46 7.6E-51 301.1 17.0 204 3-215 10-213 (323)
58 TIGR01747 diampropi_NH3ly diam 100.0 6.9E-44 1.5E-48 313.6 22.1 208 6-218 11-251 (376)
59 TIGR00260 thrC threonine synth 100.0 5.4E-44 1.2E-48 310.3 19.2 200 9-217 14-222 (328)
60 TIGR03528 2_3_DAP_am_ly diamin 100.0 3.3E-43 7.1E-48 311.2 21.7 207 8-218 32-270 (396)
61 PRK13028 tryptophan synthase s 100.0 1.4E-42 3.1E-47 306.4 24.4 207 10-221 53-283 (402)
62 TIGR01415 trpB_rel pyridoxal-p 100.0 3.6E-42 7.8E-47 306.0 24.7 203 8-219 58-292 (419)
63 PRK04346 tryptophan synthase s 100.0 3E-42 6.6E-47 303.9 22.8 199 10-213 49-263 (397)
64 PLN02618 tryptophan synthase, 100.0 6.4E-42 1.4E-46 302.5 23.5 201 8-213 55-276 (410)
65 TIGR01275 ACC_deam_rel pyridox 100.0 4.2E-42 9.2E-47 296.4 21.0 193 14-213 3-207 (311)
66 TIGR00263 trpB tryptophan synt 100.0 7.5E-42 1.6E-46 302.2 22.7 200 9-213 40-255 (385)
67 PRK13802 bifunctional indole-3 100.0 1.5E-41 3.3E-46 315.1 25.1 200 10-214 317-538 (695)
68 cd06446 Trp-synth_B Tryptophan 100.0 1.5E-41 3.2E-46 298.7 23.0 206 8-218 23-244 (365)
69 PRK03910 D-cysteine desulfhydr 100.0 7.8E-42 1.7E-46 297.1 20.5 202 9-216 6-224 (331)
70 PRK12391 tryptophan synthase s 100.0 2.8E-41 6.2E-46 300.7 24.2 201 13-219 72-301 (427)
71 PF00291 PALP: Pyridoxal-phosp 100.0 2E-41 4.3E-46 290.7 20.5 194 12-217 1-207 (306)
72 KOG1481 Cysteine synthase [Ami 100.0 6.6E-42 1.4E-46 280.9 15.3 204 10-214 41-253 (391)
73 PRK12390 1-aminocyclopropane-1 100.0 5.7E-41 1.2E-45 292.3 21.4 206 7-217 4-231 (337)
74 cd06449 ACCD Aminocyclopropane 100.0 4.5E-41 9.7E-46 289.6 20.4 192 19-216 1-215 (307)
75 PRK14045 1-aminocyclopropane-1 100.0 4E-41 8.7E-46 292.3 19.9 201 6-212 9-221 (329)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 8.6E-41 1.9E-45 291.1 21.8 204 7-216 3-229 (337)
77 TIGR03844 cysteate_syn cysteat 100.0 3.7E-41 8.1E-46 298.1 18.0 196 13-217 57-267 (398)
78 PRK13803 bifunctional phosphor 100.0 1.5E-39 3.3E-44 301.4 22.2 199 10-213 262-475 (610)
79 COG0498 ThrC Threonine synthas 100.0 2.6E-34 5.7E-39 252.9 17.2 199 11-218 69-278 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 3.3E-31 7.1E-36 221.4 16.0 207 12-223 49-278 (396)
81 COG2515 Acd 1-aminocyclopropan 100.0 1.3E-27 2.7E-32 199.3 17.5 204 6-215 3-220 (323)
82 COG1350 Predicted alternative 99.9 1.8E-26 3.8E-31 193.6 15.0 205 9-220 69-303 (432)
83 PRK09225 threonine synthase; V 99.9 4.8E-25 1E-29 198.0 18.9 178 18-209 88-279 (462)
84 cd01560 Thr-synth_2 Threonine 99.9 3.1E-24 6.7E-29 192.9 20.8 180 19-212 88-284 (460)
85 KOG1395 Tryptophan synthase be 99.9 3.1E-25 6.7E-30 187.6 12.4 194 14-212 118-327 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 1.8E-21 4E-26 162.3 12.8 208 14-224 74-321 (443)
87 PF03808 Glyco_tran_WecB: Glyc 92.5 1.4 3E-05 34.7 9.0 119 82-208 13-133 (172)
88 KOG0025 Zn2+-binding dehydroge 92.3 1.6 3.4E-05 37.6 9.5 88 34-124 124-217 (354)
89 PF04127 DFP: DNA / pantothena 91.2 2.1 4.5E-05 34.3 8.8 62 72-142 21-83 (185)
90 COG0604 Qor NADPH:quinone redu 90.7 3.2 7E-05 36.1 10.3 58 63-123 137-194 (326)
91 TIGR03201 dearomat_had 6-hydro 90.2 4.9 0.00011 34.9 11.1 59 60-122 158-216 (349)
92 cd08230 glucose_DH Glucose deh 90.0 2.8 6.1E-05 36.4 9.4 53 67-120 171-223 (355)
93 cd06533 Glyco_transf_WecG_TagA 89.5 5.4 0.00012 31.3 9.8 121 82-210 11-133 (171)
94 PF00107 ADH_zinc_N: Zinc-bind 89.2 4.9 0.00011 29.2 9.0 40 82-124 3-42 (130)
95 cd08294 leukotriene_B4_DH_like 89.0 8.4 0.00018 32.7 11.5 59 62-123 137-195 (329)
96 TIGR02819 fdhA_non_GSH formald 88.2 9 0.00019 34.1 11.4 58 61-121 178-235 (393)
97 TIGR01064 pyruv_kin pyruvate k 88.1 16 0.00035 33.6 13.2 122 85-212 262-406 (473)
98 PF00106 adh_short: short chai 86.8 11 0.00024 28.4 9.9 69 71-139 2-75 (167)
99 PF01041 DegT_DnrJ_EryC1: DegT 86.7 2.3 5E-05 37.4 6.7 86 71-156 41-128 (363)
100 KOG1201 Hydroxysteroid 17-beta 86.7 9.7 0.00021 32.8 10.1 74 69-143 38-113 (300)
101 PRK03659 glutathione-regulated 86.3 19 0.00042 34.1 13.0 51 71-124 401-451 (601)
102 cd08281 liver_ADH_like1 Zinc-d 86.3 10 0.00022 33.2 10.6 58 62-122 185-242 (371)
103 PRK03562 glutathione-regulated 86.3 19 0.00041 34.3 13.0 51 71-124 401-451 (621)
104 TIGR00670 asp_carb_tr aspartat 86.2 5.3 0.00011 34.5 8.5 45 79-123 162-208 (301)
105 KOG0023 Alcohol dehydrogenase, 85.9 6.2 0.00013 34.5 8.5 63 59-124 172-234 (360)
106 TIGR03366 HpnZ_proposed putati 85.8 7.6 0.00016 32.6 9.2 59 61-122 113-171 (280)
107 PRK09880 L-idonate 5-dehydroge 85.7 6.7 0.00015 33.9 9.1 59 61-122 162-220 (343)
108 TIGR02825 B4_12hDH leukotriene 85.6 14 0.0003 31.5 10.9 58 62-122 132-189 (325)
109 PRK12823 benD 1,6-dihydroxycyc 85.6 10 0.00022 31.0 9.8 71 71-141 10-81 (260)
110 PF00764 Arginosuc_synth: Argi 85.6 14 0.00031 33.1 11.0 129 73-207 1-138 (388)
111 TIGR03451 mycoS_dep_FDH mycoth 85.4 11 0.00024 32.7 10.4 57 62-121 170-226 (358)
112 cd08274 MDR9 Medium chain dehy 85.4 11 0.00023 32.3 10.2 58 61-122 170-227 (350)
113 PRK15408 autoinducer 2-binding 85.0 25 0.00054 30.6 17.2 44 164-210 199-243 (336)
114 PF05368 NmrA: NmrA-like famil 84.8 6.5 0.00014 31.9 8.2 50 73-123 2-51 (233)
115 PRK10669 putative cation:proto 84.7 27 0.00058 32.7 13.1 51 71-124 418-468 (558)
116 cd08256 Zn_ADH2 Alcohol dehydr 84.4 19 0.0004 31.1 11.3 59 62-123 168-226 (350)
117 cd08295 double_bond_reductase_ 84.4 19 0.00041 30.9 11.3 57 62-121 145-202 (338)
118 COG2130 Putative NADP-dependen 83.8 9.5 0.00021 33.1 8.7 67 60-129 142-209 (340)
119 PRK08703 short chain dehydroge 83.6 18 0.0004 29.1 10.4 32 70-101 7-38 (239)
120 PLN03154 putative allyl alcoho 83.0 23 0.0005 30.8 11.3 58 62-122 152-210 (348)
121 PF02826 2-Hacid_dh_C: D-isome 82.9 18 0.00038 28.4 9.6 114 71-209 37-152 (178)
122 PRK12743 oxidoreductase; Provi 82.5 11 0.00023 31.0 8.6 71 71-141 4-77 (256)
123 TIGR00696 wecB_tagA_cpsF bacte 82.3 19 0.00041 28.5 9.5 95 83-187 14-112 (177)
124 cd08293 PTGR2 Prostaglandin re 82.2 28 0.00061 29.7 11.5 59 62-123 146-208 (345)
125 cd08233 butanediol_DH_like (2R 81.7 18 0.00039 31.1 10.1 59 62-123 166-224 (351)
126 TIGR02822 adh_fam_2 zinc-bindi 80.9 9.2 0.0002 33.0 7.9 57 61-121 158-214 (329)
127 PRK12481 2-deoxy-D-gluconate 3 80.9 19 0.00041 29.5 9.5 71 70-141 9-80 (251)
128 KOG0024 Sorbitol dehydrogenase 80.7 20 0.00044 31.4 9.6 64 58-124 159-222 (354)
129 PRK06935 2-deoxy-D-gluconate 3 80.7 19 0.0004 29.5 9.4 72 70-141 16-88 (258)
130 PRK05993 short chain dehydroge 80.3 29 0.00063 28.9 10.6 64 71-138 6-69 (277)
131 cd08301 alcohol_DH_plants Plan 80.1 23 0.00051 30.8 10.4 58 62-122 181-238 (369)
132 PRK06182 short chain dehydroge 79.7 33 0.00072 28.3 10.8 67 71-141 5-71 (273)
133 PF00185 OTCace: Aspartate/orn 79.7 9.5 0.00021 29.5 6.9 46 78-123 12-65 (158)
134 PRK09424 pntA NAD(P) transhydr 79.6 24 0.00053 32.8 10.5 50 71-123 166-215 (509)
135 PLN02740 Alcohol dehydrogenase 79.6 24 0.00053 31.0 10.3 57 62-121 192-248 (381)
136 cd01075 NAD_bind_Leu_Phe_Val_D 79.5 30 0.00064 27.8 10.0 68 50-120 6-76 (200)
137 PRK08589 short chain dehydroge 79.3 21 0.00045 29.7 9.4 72 70-141 7-79 (272)
138 cd08287 FDH_like_ADH3 formalde 79.2 34 0.00074 29.2 11.0 56 63-121 163-218 (345)
139 PRK08993 2-deoxy-D-gluconate 3 79.2 29 0.00062 28.4 10.1 69 71-140 12-81 (253)
140 cd08239 THR_DH_like L-threonin 79.1 29 0.00064 29.6 10.5 59 61-122 156-214 (339)
141 PF09837 DUF2064: Uncharacteri 78.6 24 0.00052 26.1 9.1 98 85-188 2-100 (122)
142 PRK13394 3-hydroxybutyrate deh 78.5 23 0.00049 28.9 9.3 54 71-124 9-63 (262)
143 cd08297 CAD3 Cinnamyl alcohol 78.2 29 0.00062 29.7 10.2 53 65-120 162-214 (341)
144 TIGR02818 adh_III_F_hyde S-(hy 77.9 20 0.00044 31.4 9.3 57 62-121 179-235 (368)
145 cd08296 CAD_like Cinnamyl alco 77.9 33 0.00071 29.3 10.5 53 65-121 160-212 (333)
146 PF00070 Pyr_redox: Pyridine n 77.8 18 0.00039 24.1 7.4 49 73-121 2-59 (80)
147 PRK10309 galactitol-1-phosphat 77.7 30 0.00066 29.7 10.2 58 61-121 153-210 (347)
148 PRK08628 short chain dehydroge 77.7 25 0.00053 28.7 9.3 55 70-124 8-62 (258)
149 cd08292 ETR_like_2 2-enoyl thi 77.6 25 0.00053 29.6 9.5 55 62-119 133-187 (324)
150 cd08300 alcohol_DH_class_III c 77.3 17 0.00036 31.8 8.6 57 62-121 180-236 (368)
151 PRK07478 short chain dehydroge 77.2 23 0.00049 28.9 8.9 71 71-141 8-80 (254)
152 cd08277 liver_alcohol_DH_like 76.9 50 0.0011 28.8 14.1 57 62-121 178-234 (365)
153 PRK07109 short chain dehydroge 76.9 19 0.00042 31.1 8.8 71 71-141 10-82 (334)
154 cd08285 NADP_ADH NADP(H)-depen 76.6 35 0.00075 29.4 10.3 57 61-120 159-215 (351)
155 PRK05396 tdh L-threonine 3-deh 76.5 21 0.00046 30.5 8.9 52 67-121 162-213 (341)
156 PF01210 NAD_Gly3P_dh_N: NAD-d 76.4 5.6 0.00012 30.6 4.7 31 73-103 2-32 (157)
157 PRK13656 trans-2-enoyl-CoA red 76.4 59 0.0013 29.3 11.8 58 40-100 13-73 (398)
158 PRK07062 short chain dehydroge 76.3 41 0.00089 27.5 10.7 33 70-102 9-41 (265)
159 PRK08277 D-mannonate oxidoredu 76.1 32 0.0007 28.4 9.7 54 71-124 12-66 (278)
160 COG0078 ArgF Ornithine carbamo 76.0 17 0.00038 31.3 7.9 53 71-123 155-213 (310)
161 PRK12937 short chain dehydroge 76.0 39 0.00084 27.1 10.0 71 70-140 6-79 (245)
162 PF13561 adh_short_C2: Enoyl-( 76.0 20 0.00044 29.0 8.3 64 77-141 4-69 (241)
163 TIGR03590 PseG pseudaminic aci 75.9 39 0.00084 28.5 10.1 81 35-124 2-88 (279)
164 TIGR01832 kduD 2-deoxy-D-gluco 75.7 31 0.00068 27.8 9.3 70 70-140 6-76 (248)
165 PRK08226 short chain dehydroge 75.6 26 0.00055 28.7 8.8 53 71-123 8-60 (263)
166 TIGR01751 crot-CoA-red crotony 75.6 24 0.00051 31.2 9.1 56 64-122 185-240 (398)
167 cd08289 MDR_yhfp_like Yhfp put 75.6 29 0.00063 29.2 9.4 49 69-120 147-195 (326)
168 PRK12828 short chain dehydroge 75.5 36 0.00078 27.0 9.6 55 70-124 8-63 (239)
169 PRK08340 glucose-1-dehydrogena 75.3 44 0.00095 27.3 11.7 31 71-101 2-32 (259)
170 PRK06139 short chain dehydroge 75.1 20 0.00044 31.1 8.4 71 70-140 8-80 (330)
171 COG1064 AdhP Zn-dependent alco 75.1 24 0.00053 31.0 8.7 62 59-124 157-218 (339)
172 PRK07097 gluconate 5-dehydroge 74.9 28 0.00061 28.6 8.9 71 71-141 12-84 (265)
173 PRK08261 fabG 3-ketoacyl-(acyl 74.6 43 0.00094 30.1 10.7 71 70-141 211-281 (450)
174 cd08258 Zn_ADH4 Alcohol dehydr 74.5 51 0.0011 27.8 10.6 54 63-118 159-212 (306)
175 PRK07454 short chain dehydroge 74.4 32 0.00069 27.7 9.0 71 71-141 8-80 (241)
176 cd08242 MDR_like Medium chain 74.3 22 0.00047 30.1 8.3 57 61-121 148-204 (319)
177 KOG2862 Alanine-glyoxylate ami 74.1 28 0.0006 30.5 8.5 84 71-154 69-154 (385)
178 PRK05786 fabG 3-ketoacyl-(acyl 74.1 29 0.00062 27.8 8.6 34 70-103 6-39 (238)
179 PRK06194 hypothetical protein; 74.1 43 0.00094 27.8 10.0 70 71-140 8-79 (287)
180 cd08231 MDR_TM0436_like Hypoth 74.0 58 0.0012 28.1 12.4 53 64-120 173-226 (361)
181 COG1751 Uncharacterized conser 73.7 39 0.00084 26.3 8.4 75 44-123 7-90 (186)
182 PRK08862 short chain dehydroge 73.5 30 0.00066 28.0 8.7 71 71-141 7-79 (227)
183 PRK08017 oxidoreductase; Provi 73.5 41 0.00088 27.2 9.5 51 71-124 4-54 (256)
184 PTZ00354 alcohol dehydrogenase 73.5 54 0.0012 27.5 11.2 56 64-122 136-191 (334)
185 PRK05557 fabG 3-ketoacyl-(acyl 73.1 42 0.00091 26.8 9.4 54 71-124 7-62 (248)
186 PF07279 DUF1442: Protein of u 73.1 25 0.00054 28.9 7.7 56 59-117 34-94 (218)
187 cd08288 MDR_yhdh Yhdh putative 73.1 31 0.00067 29.1 9.0 51 68-121 146-196 (324)
188 PRK10754 quinone oxidoreductas 73.0 56 0.0012 27.6 11.3 56 62-120 134-189 (327)
189 PRK12938 acetyacetyl-CoA reduc 73.0 43 0.00093 27.0 9.5 70 71-140 5-77 (246)
190 TIGR00692 tdh L-threonine 3-de 72.9 35 0.00076 29.2 9.4 53 66-121 159-211 (340)
191 PF02887 PK_C: Pyruvate kinase 72.8 33 0.00072 24.8 8.3 82 53-142 5-87 (117)
192 PRK08303 short chain dehydroge 72.7 39 0.00085 28.8 9.5 71 71-141 10-92 (305)
193 cd08243 quinone_oxidoreductase 72.7 54 0.0012 27.2 10.8 55 64-121 138-192 (320)
194 PRK07806 short chain dehydroge 72.7 47 0.001 26.7 9.7 70 70-139 7-79 (248)
195 PRK07523 gluconate 5-dehydroge 72.4 33 0.00071 27.9 8.7 53 71-123 12-65 (255)
196 PRK05867 short chain dehydroge 72.3 36 0.00078 27.7 8.9 70 71-140 11-82 (253)
197 PLN02827 Alcohol dehydrogenase 72.3 36 0.00078 30.0 9.4 57 62-121 187-243 (378)
198 COG0800 Eda 2-keto-3-deoxy-6-p 72.3 53 0.0011 26.9 11.3 91 53-155 27-117 (211)
199 COG0300 DltE Short-chain dehyd 72.3 33 0.00071 29.1 8.6 72 70-141 7-81 (265)
200 PRK06197 short chain dehydroge 72.2 57 0.0012 27.5 10.4 32 71-102 18-49 (306)
201 PRK10083 putative oxidoreducta 72.1 35 0.00075 29.1 9.1 58 61-121 153-211 (339)
202 PF08659 KR: KR domain; Inter 72.0 38 0.00082 26.4 8.6 71 71-141 2-78 (181)
203 PRK05826 pyruvate kinase; Prov 72.0 75 0.0016 29.3 11.5 123 85-212 264-406 (465)
204 PRK05876 short chain dehydroge 72.0 38 0.00083 28.2 9.1 72 70-141 7-80 (275)
205 PRK06114 short chain dehydroge 71.7 53 0.0012 26.7 9.9 53 71-123 10-64 (254)
206 cd08246 crotonyl_coA_red croto 71.6 19 0.00042 31.6 7.6 55 64-121 189-243 (393)
207 PRK05866 short chain dehydroge 71.4 42 0.00091 28.3 9.3 71 71-141 42-114 (293)
208 cd05282 ETR_like 2-enoyl thioe 71.4 42 0.00092 28.1 9.4 54 62-118 132-185 (323)
209 COG0623 FabI Enoyl-[acyl-carri 71.3 30 0.00064 29.0 7.8 29 70-98 7-37 (259)
210 PRK07791 short chain dehydroge 71.3 45 0.00097 28.0 9.5 72 70-141 7-89 (286)
211 cd08278 benzyl_alcohol_DH Benz 71.2 58 0.0013 28.3 10.4 57 63-122 181-237 (365)
212 PRK06128 oxidoreductase; Provi 71.1 56 0.0012 27.5 10.1 70 71-140 57-130 (300)
213 PRK12826 3-ketoacyl-(acyl-carr 71.1 46 0.001 26.7 9.3 53 71-123 8-61 (251)
214 PRK14030 glutamate dehydrogena 71.1 33 0.00071 31.4 8.8 51 49-99 207-257 (445)
215 PRK06841 short chain dehydroge 71.0 44 0.00095 27.1 9.2 32 71-102 17-48 (255)
216 PRK12939 short chain dehydroge 71.0 40 0.00087 27.1 8.9 54 70-123 8-62 (250)
217 PRK12745 3-ketoacyl-(acyl-carr 70.9 50 0.0011 26.7 9.5 70 71-140 4-76 (256)
218 PF13460 NAD_binding_10: NADH( 70.9 26 0.00056 26.9 7.4 46 73-123 2-47 (183)
219 PRK11706 TDP-4-oxo-6-deoxy-D-g 70.4 51 0.0011 28.9 10.0 55 71-125 47-101 (375)
220 cd08284 FDH_like_2 Glutathione 70.4 67 0.0015 27.3 10.6 53 64-119 163-215 (344)
221 PRK07904 short chain dehydroge 70.3 54 0.0012 26.9 9.6 69 70-139 9-83 (253)
222 PRK10538 malonic semialdehyde 70.3 47 0.001 26.9 9.2 67 71-140 2-70 (248)
223 PRK07035 short chain dehydroge 70.0 47 0.001 26.9 9.1 70 71-140 10-81 (252)
224 PRK08085 gluconate 5-dehydroge 70.0 46 0.001 27.0 9.1 71 71-141 11-83 (254)
225 PRK08217 fabG 3-ketoacyl-(acyl 69.8 42 0.00091 27.0 8.7 55 70-124 6-61 (253)
226 cd08269 Zn_ADH9 Alcohol dehydr 69.7 64 0.0014 26.8 11.3 56 62-121 123-179 (312)
227 PRK10490 sensor protein KdpD; 69.5 92 0.002 31.1 12.4 108 70-184 251-375 (895)
228 PRK07666 fabG 3-ketoacyl-(acyl 69.5 47 0.001 26.6 9.0 54 71-124 9-63 (239)
229 cd08244 MDR_enoyl_red Possible 69.3 61 0.0013 27.1 9.9 55 62-119 136-190 (324)
230 PRK06172 short chain dehydroge 69.2 43 0.00092 27.2 8.7 54 70-123 8-62 (253)
231 PRK02610 histidinol-phosphate 69.0 43 0.00092 29.4 9.1 53 72-124 93-145 (374)
232 COG2894 MinD Septum formation 68.9 37 0.00081 28.3 7.9 115 85-215 23-150 (272)
233 PRK08063 enoyl-(acyl carrier p 68.8 60 0.0013 26.1 9.6 55 70-124 5-61 (250)
234 PRK07832 short chain dehydroge 68.8 65 0.0014 26.5 11.1 31 71-101 2-32 (272)
235 PRK06138 short chain dehydroge 68.7 53 0.0011 26.4 9.1 69 71-140 7-77 (252)
236 cd08291 ETR_like_1 2-enoyl thi 68.7 49 0.0011 28.1 9.3 50 71-123 145-195 (324)
237 PRK12935 acetoacetyl-CoA reduc 68.6 49 0.0011 26.7 8.9 70 71-140 8-80 (247)
238 PLN02527 aspartate carbamoyltr 68.6 72 0.0016 27.6 10.2 45 79-123 163-210 (306)
239 PRK07231 fabG 3-ketoacyl-(acyl 68.5 60 0.0013 26.0 9.6 32 71-102 7-38 (251)
240 PRK11891 aspartate carbamoyltr 68.4 35 0.00075 31.1 8.4 45 79-123 253-300 (429)
241 PRK06483 dihydromonapterin red 68.0 61 0.0013 25.9 9.7 67 71-140 4-70 (236)
242 PRK08192 aspartate carbamoyltr 68.0 30 0.00065 30.4 7.8 45 79-123 171-218 (338)
243 TIGR02824 quinone_pig3 putativ 67.8 69 0.0015 26.5 11.1 56 62-120 133-188 (325)
244 PRK12771 putative glutamate sy 67.6 17 0.00036 34.1 6.5 52 71-122 138-207 (564)
245 PRK07792 fabG 3-ketoacyl-(acyl 67.5 55 0.0012 27.8 9.3 55 70-124 13-69 (306)
246 PRK05653 fabG 3-ketoacyl-(acyl 67.5 53 0.0011 26.2 8.8 53 71-123 7-60 (246)
247 PRK06181 short chain dehydroge 67.4 47 0.001 27.1 8.6 70 71-140 3-74 (263)
248 PRK08643 acetoin reductase; Va 67.4 56 0.0012 26.5 9.1 54 71-124 4-58 (256)
249 cd05281 TDH Threonine dehydrog 67.4 44 0.00095 28.6 8.8 51 67-120 162-212 (341)
250 cd08267 MDR1 Medium chain dehy 67.4 49 0.0011 27.5 8.9 51 64-118 139-189 (319)
251 cd08298 CAD2 Cinnamyl alcohol 67.3 43 0.00093 28.3 8.6 54 62-119 161-214 (329)
252 PRK12429 3-hydroxybutyrate deh 67.1 54 0.0012 26.4 8.9 54 71-124 6-60 (258)
253 PRK15454 ethanol dehydrogenase 67.1 35 0.00077 30.5 8.3 91 92-189 24-119 (395)
254 PRK06079 enoyl-(acyl carrier p 67.0 42 0.00092 27.4 8.3 31 71-101 9-41 (252)
255 cd05278 FDH_like Formaldehyde 67.0 54 0.0012 27.9 9.2 55 62-119 161-215 (347)
256 PRK12744 short chain dehydroge 67.0 52 0.0011 26.8 8.8 70 71-140 10-85 (257)
257 PRK12779 putative bifunctional 66.9 38 0.00082 34.1 9.1 32 70-101 306-337 (944)
258 PRK09134 short chain dehydroge 66.6 69 0.0015 26.0 9.8 53 71-123 11-65 (258)
259 COG0399 WecE Predicted pyridox 66.4 62 0.0013 28.9 9.5 115 40-165 28-145 (374)
260 PRK00779 ornithine carbamoyltr 66.2 42 0.0009 29.0 8.2 61 62-123 146-209 (304)
261 PLN02342 ornithine carbamoyltr 66.2 38 0.00083 29.9 8.1 61 62-123 188-251 (348)
262 COG1063 Tdh Threonine dehydrog 66.2 91 0.002 27.3 14.6 51 72-124 171-222 (350)
263 PRK07326 short chain dehydroge 66.2 66 0.0014 25.6 9.4 31 71-101 8-38 (237)
264 cd05286 QOR2 Quinone oxidoredu 66.1 74 0.0016 26.2 10.8 56 63-121 131-186 (320)
265 KOG1205 Predicted dehydrogenas 66.1 74 0.0016 27.3 9.6 71 71-141 14-88 (282)
266 cd05279 Zn_ADH1 Liver alcohol 66.0 82 0.0018 27.4 10.3 54 62-118 177-230 (365)
267 cd05188 MDR Medium chain reduc 66.0 69 0.0015 25.8 9.7 54 64-121 130-183 (271)
268 PRK12809 putative oxidoreducta 65.8 47 0.001 31.7 9.2 54 70-123 310-381 (639)
269 PRK08278 short chain dehydroge 65.8 76 0.0017 26.3 9.7 53 71-123 8-68 (273)
270 PRK07814 short chain dehydroge 65.8 53 0.0011 26.9 8.7 54 70-123 11-65 (263)
271 PRK06124 gluconate 5-dehydroge 65.8 54 0.0012 26.6 8.7 71 70-140 12-84 (256)
272 cd08299 alcohol_DH_class_I_II_ 65.8 85 0.0018 27.5 10.4 54 62-118 184-237 (373)
273 TIGR03206 benzo_BadH 2-hydroxy 65.6 54 0.0012 26.3 8.6 70 70-139 4-75 (250)
274 PRK07890 short chain dehydroge 65.6 53 0.0011 26.6 8.6 54 70-123 6-60 (258)
275 PRK06702 O-acetylhomoserine am 65.3 1.1E+02 0.0023 27.9 11.0 79 72-155 78-160 (432)
276 PRK08936 glucose-1-dehydrogena 65.3 74 0.0016 25.9 9.8 71 70-140 8-81 (261)
277 cd08185 Fe-ADH1 Iron-containin 65.2 53 0.0011 29.1 9.0 89 95-189 4-96 (380)
278 cd06324 PBP1_ABC_sugar_binding 65.2 83 0.0018 26.4 18.6 45 164-211 192-240 (305)
279 TIGR02379 ECA_wecE TDP-4-keto- 65.0 68 0.0015 28.4 9.6 55 71-125 47-101 (376)
280 PRK06200 2,3-dihydroxy-2,3-dih 64.9 62 0.0013 26.4 8.9 69 70-141 7-77 (263)
281 COG0159 TrpA Tryptophan syntha 64.9 87 0.0019 26.6 13.0 68 51-123 109-178 (265)
282 cd08253 zeta_crystallin Zeta-c 64.7 80 0.0017 26.1 10.9 54 64-120 140-193 (325)
283 KOG1177 Long chain fatty acid 64.6 91 0.002 29.1 10.2 90 34-124 68-157 (596)
284 PHA02542 41 41 helicase; Provi 64.5 1.2E+02 0.0026 28.0 11.6 144 64-208 185-350 (473)
285 PRK11658 UDP-4-amino-4-deoxy-L 64.5 79 0.0017 27.9 9.9 52 73-124 51-102 (379)
286 PRK07550 hypothetical protein; 64.4 99 0.0021 27.1 11.5 76 45-124 67-143 (386)
287 cd08249 enoyl_reductase_like e 64.4 51 0.0011 28.2 8.6 50 67-120 153-202 (339)
288 PRK09853 putative selenate red 64.2 1.7E+02 0.0036 29.9 12.8 51 71-121 540-608 (1019)
289 cd05211 NAD_bind_Glu_Leu_Phe_V 64.1 47 0.001 27.1 7.8 53 51-103 4-56 (217)
290 TIGR00658 orni_carb_tr ornithi 63.9 52 0.0011 28.4 8.4 61 62-123 142-208 (304)
291 PRK06949 short chain dehydroge 63.7 53 0.0012 26.6 8.2 33 70-102 10-42 (258)
292 PRK13982 bifunctional SbtC-lik 63.6 21 0.00046 32.9 6.2 27 76-102 279-305 (475)
293 PF12000 Glyco_trans_4_3: Gkyc 63.6 18 0.00039 28.6 5.0 43 161-209 53-95 (171)
294 PRK07067 sorbitol dehydrogenas 63.5 77 0.0017 25.7 9.2 32 71-102 8-39 (257)
295 PRK09422 ethanol-active dehydr 63.5 92 0.002 26.4 10.1 57 62-122 156-213 (338)
296 PTZ00079 NADP-specific glutama 63.5 58 0.0013 29.9 8.9 52 50-101 217-268 (454)
297 cd08264 Zn_ADH_like2 Alcohol d 63.4 53 0.0012 27.7 8.4 39 62-100 156-194 (325)
298 TIGR01831 fabG_rel 3-oxoacyl-( 63.4 76 0.0016 25.4 9.7 52 73-124 2-55 (239)
299 PLN02178 cinnamyl-alcohol dehy 63.4 35 0.00075 30.1 7.4 52 67-121 177-228 (375)
300 cd00401 AdoHcyase S-adenosyl-L 63.3 39 0.00084 30.6 7.7 53 64-120 197-249 (413)
301 cd08261 Zn_ADH7 Alcohol dehydr 63.2 94 0.002 26.4 10.7 53 62-118 153-205 (337)
302 cd08248 RTN4I1 Human Reticulon 63.1 54 0.0012 27.9 8.5 47 69-119 163-209 (350)
303 cd05288 PGDH Prostaglandin deh 63.1 91 0.002 26.2 11.0 53 64-119 141-194 (329)
304 PLN02702 L-idonate 5-dehydroge 63.0 57 0.0012 28.3 8.7 57 62-121 175-231 (364)
305 cd05313 NAD_bind_2_Glu_DH NAD( 62.9 51 0.0011 27.8 7.9 52 50-101 18-69 (254)
306 cd08250 Mgc45594_like Mgc45594 62.9 93 0.002 26.2 11.5 55 63-120 134-188 (329)
307 TIGR01316 gltA glutamate synth 62.7 38 0.00081 30.8 7.7 52 71-122 273-329 (449)
308 PRK05872 short chain dehydroge 62.6 68 0.0015 27.0 8.9 68 70-141 10-82 (296)
309 PRK06500 short chain dehydroge 62.6 79 0.0017 25.3 9.3 52 70-123 7-58 (249)
310 PRK08213 gluconate 5-dehydroge 62.5 72 0.0016 25.9 8.9 54 71-124 14-68 (259)
311 PRK08306 dipicolinate synthase 62.4 99 0.0021 26.5 9.8 47 71-120 153-199 (296)
312 PRK06947 glucose-1-dehydrogena 62.3 56 0.0012 26.3 8.1 70 71-140 4-76 (248)
313 PRK05693 short chain dehydroge 62.1 89 0.0019 25.7 10.6 66 71-140 3-68 (274)
314 cd08260 Zn_ADH6 Alcohol dehydr 62.0 96 0.0021 26.4 9.9 52 63-118 160-211 (345)
315 PRK09257 aromatic amino acid a 62.0 98 0.0021 27.3 10.1 81 41-123 65-148 (396)
316 PRK05717 oxidoreductase; Valid 62.0 85 0.0018 25.5 9.4 70 70-141 11-81 (255)
317 PRK08265 short chain dehydroge 62.0 81 0.0018 25.8 9.1 69 70-140 7-76 (261)
318 cd08259 Zn_ADH5 Alcohol dehydr 61.7 77 0.0017 26.6 9.1 52 64-118 158-209 (332)
319 PRK08177 short chain dehydroge 61.7 80 0.0017 25.1 9.6 65 71-138 3-67 (225)
320 PF02887 PK_C: Pyruvate kinase 61.6 24 0.00053 25.5 5.2 44 163-212 6-49 (117)
321 TIGR02817 adh_fam_1 zinc-bindi 61.6 79 0.0017 26.7 9.2 50 69-121 149-199 (336)
322 PRK13376 pyrB bifunctional asp 61.6 91 0.002 29.2 9.9 45 79-123 186-233 (525)
323 cd08290 ETR 2-enoyl thioester 61.5 66 0.0014 27.3 8.7 59 64-122 142-201 (341)
324 PRK09072 short chain dehydroge 61.5 69 0.0015 26.2 8.6 33 70-102 6-38 (263)
325 PF02310 B12-binding: B12 bind 61.5 56 0.0012 23.2 7.4 94 83-185 18-114 (121)
326 cd08550 GlyDH-like Glycerol_de 61.5 51 0.0011 28.8 8.1 33 175-210 77-109 (349)
327 PRK06720 hypothetical protein; 61.4 75 0.0016 24.7 9.3 71 71-141 18-90 (169)
328 cd08238 sorbose_phosphate_red 61.4 99 0.0021 27.5 10.1 51 63-115 170-222 (410)
329 PRK08264 short chain dehydroge 61.4 48 0.001 26.5 7.5 32 71-102 8-40 (238)
330 PRK06077 fabG 3-ketoacyl-(acyl 61.2 65 0.0014 25.9 8.3 53 71-123 8-62 (252)
331 TIGR02823 oxido_YhdH putative 61.1 78 0.0017 26.6 9.1 51 66-119 142-193 (323)
332 cd08282 PFDH_like Pseudomonas 61.1 72 0.0016 27.9 9.0 55 62-119 170-224 (375)
333 PRK06463 fabG 3-ketoacyl-(acyl 61.1 88 0.0019 25.4 10.7 68 71-141 9-76 (255)
334 PRK15438 erythronate-4-phospha 61.1 78 0.0017 28.3 9.2 129 46-198 89-223 (378)
335 PRK05650 short chain dehydroge 61.1 89 0.0019 25.6 9.2 70 71-140 2-73 (270)
336 PRK09423 gldA glycerol dehydro 60.9 65 0.0014 28.4 8.7 10 179-188 87-96 (366)
337 cd08240 6_hydroxyhexanoate_dh_ 60.9 1.1E+02 0.0023 26.2 10.5 52 67-121 174-225 (350)
338 PRK02255 putrescine carbamoylt 60.8 63 0.0014 28.4 8.4 50 74-123 159-214 (338)
339 cd00288 Pyruvate_Kinase Pyruva 60.8 76 0.0016 29.4 9.2 86 48-141 359-449 (480)
340 TIGR02415 23BDH acetoin reduct 60.7 87 0.0019 25.2 9.0 54 71-124 2-56 (254)
341 PRK07677 short chain dehydroge 60.6 78 0.0017 25.6 8.7 70 71-140 3-74 (252)
342 PRK06202 hypothetical protein; 60.5 14 0.00029 30.2 4.1 37 176-212 62-98 (232)
343 PRK05854 short chain dehydroge 60.3 82 0.0018 26.8 9.1 70 71-141 16-90 (313)
344 PRK06953 short chain dehydroge 60.3 85 0.0018 24.9 10.3 51 71-124 3-53 (222)
345 PLN02253 xanthoxin dehydrogena 60.3 70 0.0015 26.4 8.5 31 71-101 20-50 (280)
346 PRK09291 short chain dehydroge 60.2 43 0.00093 27.1 7.1 53 71-123 4-57 (257)
347 cd08170 GlyDH Glycerol dehydro 60.1 48 0.001 28.9 7.7 13 175-188 77-89 (351)
348 PLN02586 probable cinnamyl alc 60.0 70 0.0015 27.9 8.7 55 64-121 179-233 (360)
349 PRK06567 putative bifunctional 60.0 59 0.0013 33.0 8.8 31 71-101 384-414 (1028)
350 PF00091 Tubulin: Tubulin/FtsZ 59.8 36 0.00078 27.6 6.4 60 152-211 90-166 (216)
351 PRK04870 histidinol-phosphate 59.5 77 0.0017 27.4 8.9 82 72-154 83-165 (356)
352 cd07766 DHQ_Fe-ADH Dehydroquin 59.2 1.2E+02 0.0025 26.2 11.1 12 176-188 79-90 (332)
353 PRK06348 aspartate aminotransf 59.1 1.2E+02 0.0027 26.5 11.4 83 72-155 91-175 (384)
354 TIGR03325 BphB_TodD cis-2,3-di 59.1 84 0.0018 25.7 8.7 68 70-140 6-75 (262)
355 PRK06101 short chain dehydroge 58.9 94 0.002 25.0 9.1 63 71-137 3-67 (240)
356 PRK14804 ornithine carbamoyltr 58.9 56 0.0012 28.3 7.7 35 71-105 155-189 (311)
357 PRK06482 short chain dehydroge 58.9 81 0.0018 25.9 8.6 32 71-102 4-35 (276)
358 cd08191 HHD 6-hydroxyhexanoate 58.9 1.2E+02 0.0025 27.0 10.0 14 175-189 79-92 (386)
359 PRK06701 short chain dehydroge 58.9 1.1E+02 0.0024 25.7 10.0 53 71-123 48-102 (290)
360 PLN00175 aminotransferase fami 58.8 1.3E+02 0.0029 26.7 11.7 83 72-155 117-200 (413)
361 PRK15407 lipopolysaccharide bi 58.8 1.2E+02 0.0026 27.5 10.2 53 72-124 80-140 (438)
362 CHL00194 ycf39 Ycf39; Provisio 58.7 45 0.00097 28.4 7.2 32 71-102 2-33 (317)
363 TIGR01963 PHB_DH 3-hydroxybuty 58.7 78 0.0017 25.4 8.4 53 71-123 3-56 (255)
364 PRK06113 7-alpha-hydroxysteroi 58.6 86 0.0019 25.4 8.6 70 71-140 13-84 (255)
365 PRK12825 fabG 3-ketoacyl-(acyl 58.6 91 0.002 24.7 9.5 54 71-124 8-63 (249)
366 PRK06180 short chain dehydroge 58.3 94 0.002 25.7 9.0 32 71-102 6-37 (277)
367 cd05280 MDR_yhdh_yhfp Yhdh and 58.3 94 0.002 26.0 9.1 48 70-120 148-195 (325)
368 COG1454 EutG Alcohol dehydroge 58.1 1.1E+02 0.0025 27.3 9.6 99 94-197 6-106 (377)
369 PRK12384 sorbitol-6-phosphate 58.1 1E+02 0.0022 25.0 11.5 32 71-102 4-35 (259)
370 PRK05565 fabG 3-ketoacyl-(acyl 57.9 95 0.0021 24.7 8.9 54 71-124 7-62 (247)
371 PRK07063 short chain dehydroge 57.9 1E+02 0.0022 25.0 9.1 71 71-141 9-83 (260)
372 PRK06505 enoyl-(acyl carrier p 57.9 1.1E+02 0.0024 25.4 9.3 70 71-141 9-82 (271)
373 COG1587 HemD Uroporphyrinogen- 57.8 1.1E+02 0.0023 25.3 10.1 121 82-211 86-213 (248)
374 cd08251 polyketide_synthase po 57.5 1.1E+02 0.0023 25.1 11.0 54 62-118 114-167 (303)
375 cd08279 Zn_ADH_class_III Class 57.4 1.3E+02 0.0028 26.1 10.9 54 62-118 176-229 (363)
376 KOG1176 Acyl-CoA synthetase [L 57.3 1.7E+02 0.0037 27.5 11.5 59 66-124 69-127 (537)
377 PRK07774 short chain dehydroge 57.2 1E+02 0.0022 24.8 8.9 52 71-122 8-60 (250)
378 PRK08594 enoyl-(acyl carrier p 57.2 1.1E+02 0.0023 25.1 9.4 71 71-141 9-84 (257)
379 PRK08862 short chain dehydroge 57.2 1E+02 0.0022 24.9 10.3 86 95-185 6-93 (227)
380 cd08245 CAD Cinnamyl alcohol d 57.1 1E+02 0.0022 26.0 9.1 55 63-121 157-211 (330)
381 PRK08416 7-alpha-hydroxysteroi 57.1 1.1E+02 0.0023 25.0 10.0 72 70-141 9-84 (260)
382 cd08176 LPO Lactadehyde:propan 57.0 68 0.0015 28.4 8.2 89 94-189 5-98 (377)
383 PRK08945 putative oxoacyl-(acy 56.9 1E+02 0.0022 24.8 9.3 33 70-102 13-45 (247)
384 cd05284 arabinose_DH_like D-ar 56.8 87 0.0019 26.6 8.7 52 65-120 164-216 (340)
385 PRK14807 histidinol-phosphate 56.8 89 0.0019 27.0 8.8 82 72-154 78-160 (351)
386 cd08286 FDH_like_ADH2 formalde 56.8 98 0.0021 26.4 9.0 53 63-119 161-214 (345)
387 TIGR00561 pntA NAD(P) transhyd 56.7 1.2E+02 0.0025 28.4 9.7 50 72-124 166-215 (511)
388 COG0742 N6-adenine-specific me 56.6 1E+02 0.0022 24.7 11.0 97 40-150 20-122 (187)
389 PRK06354 pyruvate kinase; Prov 56.5 93 0.002 29.6 9.2 84 50-142 363-447 (590)
390 PRK06057 short chain dehydroge 56.5 1.1E+02 0.0023 24.9 9.7 66 70-139 8-74 (255)
391 PRK05166 histidinol-phosphate 56.3 83 0.0018 27.5 8.6 82 72-154 90-171 (371)
392 COG1433 Uncharacterized conser 56.2 81 0.0018 23.4 7.4 51 82-135 54-104 (121)
393 PLN02583 cinnamoyl-CoA reducta 55.7 1E+02 0.0022 26.0 8.8 33 70-102 7-39 (297)
394 PF13580 SIS_2: SIS domain; PD 55.6 27 0.00058 26.2 4.7 35 66-100 101-137 (138)
395 PRK07775 short chain dehydroge 55.6 1.2E+02 0.0025 25.1 9.1 68 71-138 12-81 (274)
396 TIGR03877 thermo_KaiC_1 KaiC d 55.5 40 0.00088 27.6 6.1 55 64-118 16-74 (237)
397 cd08187 BDH Butanol dehydrogen 55.4 1E+02 0.0022 27.3 9.1 90 94-189 6-99 (382)
398 PLN02623 pyruvate kinase 55.3 1.9E+02 0.0042 27.5 11.8 121 84-212 367-509 (581)
399 PRK03692 putative UDP-N-acetyl 55.3 1.2E+02 0.0027 25.2 9.1 94 83-187 70-169 (243)
400 PRK10624 L-1,2-propanediol oxi 55.3 79 0.0017 28.1 8.3 20 167-189 81-100 (382)
401 PRK06924 short chain dehydroge 55.1 98 0.0021 24.9 8.4 67 71-138 3-70 (251)
402 PRK08251 short chain dehydroge 55.1 1.1E+02 0.0024 24.6 9.4 32 71-102 4-35 (248)
403 COG2242 CobL Precorrin-6B meth 55.1 1.1E+02 0.0024 24.6 8.2 133 66-215 32-166 (187)
404 PRK07069 short chain dehydroge 55.0 1.1E+02 0.0024 24.5 10.2 31 72-102 2-32 (251)
405 cd08265 Zn_ADH3 Alcohol dehydr 55.0 1E+02 0.0022 27.0 9.0 55 64-121 199-253 (384)
406 PRK09860 putative alcohol dehy 54.9 69 0.0015 28.5 7.9 89 94-189 8-101 (383)
407 PTZ00066 pyruvate kinase; Prov 54.9 1.1E+02 0.0025 28.5 9.3 28 114-141 453-480 (513)
408 cd08241 QOR1 Quinone oxidoredu 54.8 1.2E+02 0.0026 25.0 10.8 56 63-121 134-189 (323)
409 PRK12831 putative oxidoreducta 54.8 61 0.0013 29.6 7.7 52 71-122 282-338 (464)
410 PRK04284 ornithine carbamoyltr 54.8 1.5E+02 0.0032 26.0 10.0 45 79-123 166-216 (332)
411 PRK07985 oxidoreductase; Provi 54.6 1.1E+02 0.0024 25.7 8.9 71 71-141 51-125 (294)
412 TIGR02095 glgA glycogen/starch 54.0 1.1E+02 0.0024 27.6 9.3 29 76-104 17-45 (473)
413 PRK06247 pyruvate kinase; Prov 53.9 1.2E+02 0.0026 28.0 9.3 90 47-146 352-442 (476)
414 PRK14031 glutamate dehydrogena 53.9 75 0.0016 29.1 7.9 52 50-101 208-259 (444)
415 cd08254 hydroxyacyl_CoA_DH 6-h 53.9 1.3E+02 0.0029 25.2 10.5 56 63-122 160-215 (338)
416 PF01262 AlaDh_PNT_C: Alanine 53.8 71 0.0015 24.6 7.0 50 71-123 21-70 (168)
417 cd05289 MDR_like_2 alcohol deh 53.7 1.2E+02 0.0027 24.7 9.9 50 64-117 140-189 (309)
418 TIGR01830 3oxo_ACP_reduc 3-oxo 53.6 1.1E+02 0.0024 24.2 8.6 52 73-124 2-55 (239)
419 PRK08267 short chain dehydroge 53.6 98 0.0021 25.1 8.2 32 71-102 3-34 (260)
420 cd08272 MDR6 Medium chain dehy 53.5 1.3E+02 0.0028 24.9 10.6 56 62-121 138-193 (326)
421 cd08262 Zn_ADH8 Alcohol dehydr 53.5 1.4E+02 0.003 25.3 12.6 56 61-119 154-209 (341)
422 PRK12775 putative trifunctiona 53.5 75 0.0016 32.3 8.6 32 71-102 431-462 (1006)
423 cd05283 CAD1 Cinnamyl alcohol 53.4 88 0.0019 26.7 8.2 52 66-121 167-218 (337)
424 cd08270 MDR4 Medium chain dehy 53.3 68 0.0015 26.6 7.3 48 68-118 132-179 (305)
425 PF11760 CbiG_N: Cobalamin syn 53.1 40 0.00086 23.4 4.7 47 169-215 5-51 (84)
426 PRK07201 short chain dehydroge 53.1 1E+02 0.0022 29.2 9.1 72 70-141 372-445 (657)
427 TIGR01318 gltD_gamma_fam gluta 53.0 74 0.0016 29.1 7.9 51 71-121 142-210 (467)
428 PRK09414 glutamate dehydrogena 52.9 77 0.0017 29.0 7.9 52 50-101 212-263 (445)
429 PRK12810 gltD glutamate syntha 52.9 76 0.0016 29.0 8.0 77 45-121 111-212 (471)
430 PRK08690 enoyl-(acyl carrier p 52.9 1.2E+02 0.0025 25.0 8.5 70 71-141 8-81 (261)
431 PRK02102 ornithine carbamoyltr 52.8 1.6E+02 0.0035 25.8 10.0 60 62-123 149-216 (331)
432 cd08283 FDH_like_1 Glutathione 52.8 1.5E+02 0.0032 26.0 9.7 56 62-120 178-234 (386)
433 PRK12748 3-ketoacyl-(acyl-carr 52.4 1.3E+02 0.0027 24.5 9.2 71 71-141 7-92 (256)
434 PRK06198 short chain dehydroge 52.4 1.2E+02 0.0027 24.4 9.5 53 71-123 8-62 (260)
435 cd00616 AHBA_syn 3-amino-5-hyd 51.8 1.5E+02 0.0033 25.2 9.7 52 73-124 36-87 (352)
436 PRK07200 aspartate/ornithine c 51.8 64 0.0014 29.1 7.1 45 79-123 204-254 (395)
437 PTZ00376 aspartate aminotransf 51.7 1.7E+02 0.0037 25.8 10.3 77 44-124 71-153 (404)
438 cd08276 MDR7 Medium chain dehy 51.7 1.4E+02 0.0031 24.9 11.2 55 63-121 155-209 (336)
439 PRK06836 aspartate aminotransf 51.4 1.7E+02 0.0037 25.7 11.2 53 72-125 98-150 (394)
440 PRK07023 short chain dehydroge 51.2 1E+02 0.0022 24.7 7.9 49 71-123 3-51 (243)
441 PRK07576 short chain dehydroge 51.2 1.4E+02 0.003 24.5 8.9 53 71-123 11-64 (264)
442 PLN02514 cinnamyl-alcohol dehy 51.1 1.5E+02 0.0032 25.7 9.3 54 64-120 176-229 (357)
443 cd08235 iditol_2_DH_like L-idi 51.1 1.5E+02 0.0033 25.1 11.3 56 62-120 159-214 (343)
444 PRK12746 short chain dehydroge 51.0 1.3E+02 0.0028 24.2 9.2 53 71-123 8-62 (254)
445 PRK09242 tropinone reductase; 50.9 1.3E+02 0.0029 24.3 8.8 54 71-124 11-67 (257)
446 PRK07577 short chain dehydroge 50.9 1.2E+02 0.0027 23.9 9.6 61 71-140 5-65 (234)
447 PRK12742 oxidoreductase; Provi 50.8 1.2E+02 0.0027 24.0 9.3 53 70-124 7-60 (237)
448 cd08177 MAR Maleylacetate redu 50.7 1E+02 0.0022 26.7 8.2 13 175-188 77-89 (337)
449 PRK07889 enoyl-(acyl carrier p 50.7 1.4E+02 0.003 24.4 8.7 69 71-141 9-82 (256)
450 TIGR02638 lactal_redase lactal 50.5 1.1E+02 0.0023 27.2 8.3 89 94-189 6-99 (379)
451 PRK08339 short chain dehydroge 50.1 1.2E+02 0.0026 24.9 8.3 31 71-101 10-40 (263)
452 PRK05875 short chain dehydroge 50.1 1.4E+02 0.0031 24.4 8.8 31 71-101 9-39 (276)
453 COG3688 Predicted RNA-binding 50.1 84 0.0018 24.6 6.5 92 81-172 36-132 (173)
454 PRK09730 putative NAD(P)-bindi 50.1 1.3E+02 0.0028 24.0 9.4 54 71-124 3-58 (247)
455 PF04989 CmcI: Cephalosporin h 50.0 57 0.0012 26.6 5.9 47 163-211 22-69 (206)
456 PF06745 KaiC: KaiC; InterPro 49.9 36 0.00079 27.4 5.0 55 64-118 14-73 (226)
457 PF13407 Peripla_BP_4: Peripla 49.9 1.3E+02 0.0029 24.1 13.3 154 49-211 40-218 (257)
458 TIGR01829 AcAcCoA_reduct aceto 49.9 1.1E+02 0.0024 24.2 7.9 54 71-124 2-57 (242)
459 PRK08642 fabG 3-ketoacyl-(acyl 49.9 1.3E+02 0.0029 24.0 9.3 32 71-102 7-38 (253)
460 PRK07324 transaminase; Validat 49.7 98 0.0021 27.1 8.0 81 72-154 82-165 (373)
461 PRK12562 ornithine carbamoyltr 49.6 82 0.0018 27.6 7.3 44 80-123 168-217 (334)
462 PF13478 XdhC_C: XdhC Rossmann 49.4 26 0.00057 26.4 3.7 31 73-103 1-31 (136)
463 PRK15481 transcriptional regul 49.4 1.6E+02 0.0036 26.2 9.5 81 72-155 143-225 (431)
464 TIGR02853 spore_dpaA dipicolin 49.3 1.7E+02 0.0036 25.0 9.7 65 51-118 132-196 (287)
465 PLN03026 histidinol-phosphate 49.2 1.3E+02 0.0028 26.5 8.7 83 72-155 105-188 (380)
466 PRK06436 glycerate dehydrogena 49.1 1.4E+02 0.0031 25.6 8.7 101 71-198 123-225 (303)
467 cd08263 Zn_ADH10 Alcohol dehyd 49.1 1.6E+02 0.0034 25.5 9.2 52 64-118 183-234 (367)
468 PRK08220 2,3-dihydroxybenzoate 49.1 1.4E+02 0.003 24.0 8.5 34 70-103 9-42 (252)
469 PRK07825 short chain dehydroge 48.8 1.5E+02 0.0032 24.3 10.0 67 71-141 7-75 (273)
470 PRK07453 protochlorophyllide o 48.8 1.7E+02 0.0036 24.9 9.2 70 70-139 7-78 (322)
471 cd05276 p53_inducible_oxidored 48.5 1.5E+02 0.0033 24.3 11.0 54 64-120 135-188 (323)
472 PF01494 FAD_binding_3: FAD bi 48.5 29 0.00063 29.3 4.4 31 72-102 3-33 (356)
473 PRK07041 short chain dehydroge 48.4 89 0.0019 24.8 7.0 30 73-102 1-30 (230)
474 COG0075 Serine-pyruvate aminot 48.3 1E+02 0.0022 27.6 7.8 30 73-102 83-112 (383)
475 PRK01713 ornithine carbamoyltr 48.3 1.4E+02 0.0031 26.1 8.6 44 80-123 168-217 (334)
476 PRK05973 replicative DNA helic 48.2 87 0.0019 26.0 6.9 55 64-118 59-117 (237)
477 PRK09135 pteridine reductase; 48.1 1.4E+02 0.003 23.8 11.0 33 71-103 8-40 (249)
478 COG2085 Predicted dinucleotide 48.1 1.5E+02 0.0033 24.2 10.0 78 72-151 3-93 (211)
479 PRK13243 glyoxylate reductase; 48.0 1.9E+02 0.0041 25.2 10.3 104 71-198 151-256 (333)
480 PF00155 Aminotran_1_2: Aminot 47.8 40 0.00086 29.0 5.2 52 72-123 70-121 (363)
481 KOG1210 Predicted 3-ketosphing 47.7 1.9E+02 0.0042 25.3 9.0 33 71-103 35-67 (331)
482 PRK05854 short chain dehydroge 47.7 1.8E+02 0.0038 24.8 9.2 86 95-186 15-104 (313)
483 PRK08912 hypothetical protein; 47.6 1.9E+02 0.0042 25.2 11.9 52 72-124 89-140 (387)
484 PRK09206 pyruvate kinase; Prov 47.4 2.3E+02 0.0051 26.2 12.4 121 85-211 263-402 (470)
485 PRK07533 enoyl-(acyl carrier p 47.4 1.6E+02 0.0034 24.1 8.9 70 71-141 12-85 (258)
486 PRK05447 1-deoxy-D-xylulose 5- 47.4 2.1E+02 0.0046 25.7 13.1 110 71-198 3-114 (385)
487 PRK05957 aspartate aminotransf 47.3 1E+02 0.0022 27.1 7.8 54 71-125 90-143 (389)
488 PRK06123 short chain dehydroge 47.2 1.3E+02 0.0027 24.2 7.8 53 71-123 4-58 (248)
489 PRK07856 short chain dehydroge 47.2 1.4E+02 0.003 24.1 8.1 33 70-102 7-39 (252)
490 TIGR01064 pyruv_kin pyruvate k 47.1 1.7E+02 0.0037 27.0 9.3 84 49-141 358-443 (473)
491 PRK12747 short chain dehydroge 47.0 1.3E+02 0.0028 24.3 7.9 53 71-123 6-60 (252)
492 PRK07392 threonine-phosphate d 47.0 1.1E+02 0.0025 26.4 7.9 51 72-124 76-126 (360)
493 PRK06849 hypothetical protein; 47.0 2E+02 0.0044 25.3 10.1 32 71-102 6-37 (389)
494 KOG0634 Aromatic amino acid am 46.9 1.1E+02 0.0024 27.9 7.7 51 74-125 127-178 (472)
495 PF00465 Fe-ADH: Iron-containi 46.8 36 0.00078 29.9 4.7 109 96-213 2-132 (366)
496 PRK10537 voltage-gated potassi 46.7 2.2E+02 0.0047 25.6 12.5 32 71-102 241-272 (393)
497 PRK04523 N-acetylornithine car 46.6 86 0.0019 27.5 7.0 45 79-123 185-236 (335)
498 cd08182 HEPD Hydroxyethylphosp 46.4 1.5E+02 0.0032 26.1 8.5 20 167-189 71-90 (367)
499 cd00288 Pyruvate_Kinase Pyruva 46.4 2.5E+02 0.0053 26.1 12.8 121 85-212 264-408 (480)
500 PRK02731 histidinol-phosphate 46.2 1.4E+02 0.003 25.9 8.3 52 72-124 86-137 (367)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-56 Score=373.30 Aligned_cols=213 Identities=57% Similarity=0.949 Sum_probs=201.1
Q ss_pred HhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 027405 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 89 (224)
+.+.+.+++|||+++.+++...+++||+|+|++||+||.|||.+.+|+.+|+++|.++|| .+||++||||+|++||+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHHH
Confidence 456788999999999999888789999999999999999999999999999999999999 5899999999999999999
Q ss_pred HHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCC-hHHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhHHHhHHHH
Q 027405 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG-MKGAVQKAEEIRDKTPN-SYVLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~a~E 167 (224)
+.+|+++++|||++++.+|+++|+.|||+|+.++...+ +..+.+++++++++.++ .+|++||+||.||.+||.|+|.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998444 88899999999998877 77888999999999999999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCC
Q 027405 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGGL 224 (224)
Q Consensus 168 i~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~ 224 (224)
|++|+++.+|++|+++|||||++|++++||+.+|++|+|+|||++|+.+.+|. +||
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~ 217 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPH 217 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCc
Confidence 99999888999999999999999999999999999999999999999988776 665
No 2
>PLN02565 cysteine synthase
Probab=100.00 E-value=2e-55 Score=380.25 Aligned_cols=218 Identities=91% Similarity=1.384 Sum_probs=200.8
Q ss_pred hhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHH
Q 027405 7 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA 86 (224)
...+.+...+++|||++++.++...+.+||+|+|++|||||||||++.+++..+.++|.+.+|.+.||++|+||||+|+|
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 34567889999999999988766666799999999999999999999999999999998888877899999999999999
Q ss_pred HHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHH
Q 027405 87 FMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~ 166 (224)
++|+.+|++|+||||+++++.|+++++.+||+|+.+++..+++++.+.+++++++.+++||++||+|+.|+..||+|+|+
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~ 163 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGP 163 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987556688889999998876578999999999998899999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCC
Q 027405 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGGL 224 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~ 224 (224)
||++|+++.+|+||+|+|+||+++|++.+||+.+|++|||+|||++|+++.+|.+.+|
T Consensus 164 Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~ 221 (322)
T PLN02565 164 EIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPH 221 (322)
T ss_pred HHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCc
Confidence 9999997679999999999999999999999999999999999999999987766654
No 3
>PLN03013 cysteine synthase
Probab=100.00 E-value=2e-55 Score=388.66 Aligned_cols=217 Identities=73% Similarity=1.222 Sum_probs=203.4
Q ss_pred hhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 027405 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 87 (224)
+++.+.+.+++|||++++.++...+.+||+|+|++|||||||||++.++|.+++++|.+.+|..+||++|+||||+|+|+
T Consensus 113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~ 192 (429)
T PLN03013 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF 192 (429)
T ss_pred HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHH
Confidence 67889999999999999999877778999999999999999999999999999999998888778999999999999999
Q ss_pred HHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHH
Q 027405 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 167 (224)
+|+.+|++++||||+++++.|+++++.+||+|+.+++..+++++++.+++++++.+++||++||+|+.|+..||+|+|+|
T Consensus 193 ~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~E 272 (429)
T PLN03013 193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE 272 (429)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875567788999999988866899999999999977899999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCC
Q 027405 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGGL 224 (224)
Q Consensus 168 i~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~ 224 (224)
|++|+++++|+||+|+|+||+++|++++||+.+|++|||||||++++.+.+|.+++|
T Consensus 273 I~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~ 329 (429)
T PLN03013 273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPH 329 (429)
T ss_pred HHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCc
Confidence 999997789999999999999999999999999999999999999999887766654
No 4
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=6.1e-54 Score=376.37 Aligned_cols=219 Identities=63% Similarity=1.054 Sum_probs=202.1
Q ss_pred chhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 027405 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~al 85 (224)
+++.+++...+++|||+++++++...+.+||+|+|++|||||||||++.++|.+++++|.+.||.++||++|+||||+|+
T Consensus 47 ~~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~al 126 (368)
T PLN02556 47 TKIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISL 126 (368)
T ss_pred chhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHH
Confidence 34567889999999999999998777889999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHH
Q 027405 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (224)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 165 (224)
|++|+.+|++|+||||+.++..|+++++.+||+|+.+++..++...++.+++++++.++++|++||+|+.|+..||.+++
T Consensus 127 A~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg 206 (368)
T PLN02556 127 AFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTG 206 (368)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998644455778888888887778999999999999668999999
Q ss_pred HHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCC
Q 027405 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGGL 224 (224)
Q Consensus 166 ~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~ 224 (224)
+||++|+.+.+|+||+|+|||||++|++.+||+.+|++|||||||++++.+.+|.+++|
T Consensus 207 ~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~ 265 (368)
T PLN02556 207 PEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPH 265 (368)
T ss_pred HHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCe
Confidence 99999986689999999999999999999999999999999999999988888776654
No 5
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1e-53 Score=366.08 Aligned_cols=209 Identities=49% Similarity=0.791 Sum_probs=194.5
Q ss_pred hhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 027405 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 87 (224)
.++++...+++|||+++++|+...+.+||+|+|++|||||||+|++.+++.+++++|.+.++ .+||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHH
Confidence 35678888999999999999877778999999999999999999999999999999987776 67999999999999999
Q ss_pred HHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHH
Q 027405 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 167 (224)
+|+.+|++|+||||+++++.|+++++.+||+|+.++...+++++.+.+++++++. +++|++||+|+.|+..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999996557888888999998876 789999999999988899999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 168 i~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
|++|+++.+|+||+|+|+||+++|++.+||+.+|++|||||||++++.+.+
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g 210 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG 210 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC
Confidence 999997679999999999999999999999999999999999999887764
No 6
>PLN00011 cysteine synthase
Probab=100.00 E-value=3.9e-53 Score=366.63 Aligned_cols=221 Identities=70% Similarity=1.138 Sum_probs=200.1
Q ss_pred chhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
.+-.-.++.+.+.+++|||+++++++...+.+||+|+|++|||||||||++.+++.+++++|.+.|+.++||++|+||||
T Consensus 2 ~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g 81 (323)
T PLN00011 2 EDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTG 81 (323)
T ss_pred cchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHH
Confidence 34444667788899999999999988666679999999999999999999999999999999988887789999999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++...+.++..+.+++++++.+++||++||+|+.|+..||.
T Consensus 82 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~ 161 (323)
T PLN00011 82 IGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYR 161 (323)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHH
Confidence 99999999999999999999999999999999999999999644445667788888887667899999999999888999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCC
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGG 223 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~ 223 (224)
+++.||++|+.++||+||+|+|+|||++|++.+||+.+|++|||||||++++++.++.+.+
T Consensus 162 t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~ 222 (323)
T PLN00011 162 TTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGP 222 (323)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCC
Confidence 9999999999668999999999999999999999999999999999999999887765543
No 7
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.1e-52 Score=360.58 Aligned_cols=209 Identities=64% Similarity=1.054 Sum_probs=193.9
Q ss_pred hcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHc
Q 027405 13 TELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK 92 (224)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~ 92 (224)
...+++|||++++.|+...+.+||+|+|++|||||||+|++.+++..+.++|.+.++ ++|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence 457899999999999988788999999999999999999999999999999987776 5699999999999999999999
Q ss_pred CCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHhh
Q 027405 93 GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 172 (224)
Q Consensus 93 g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~ 172 (224)
|++|+||||++++..|+++++.+||+|+.++.+.+++++.+.+++++++.+++++++||+|+.+++.||.+++.||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997555788999999998876578999999999988899999999999999
Q ss_pred CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCC
Q 027405 173 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222 (224)
Q Consensus 173 ~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~ 222 (224)
+++||+||+|+|+||+++|++.+|++.+|.+|||||||++++++.++.++
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~ 210 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPG 210 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCC
Confidence 76799999999999999999999999999999999999999998876444
No 8
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-53 Score=364.74 Aligned_cols=209 Identities=25% Similarity=0.352 Sum_probs=194.3
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
++..++.++...+.+|||..++.|++.++++||+|+|++||+||||.||+++.+..+.+++.. ...||++|+||||+
T Consensus 11 ~i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQ 87 (347)
T COG1171 11 DILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQ 87 (347)
T ss_pred HHHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHH
Confidence 345678999999999999999999999999999999999999999999999999987644221 35699999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
++|++|+++|++++||||.++|..|++.++.|||+|++++. +|+++.+.++++++++ ++.|+++||+|+. ++||+|
T Consensus 88 GvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGT 163 (347)
T COG1171 88 GVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGT 163 (347)
T ss_pred HHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccH
Confidence 99999999999999999999999999999999999999995 8999999999999998 9999999999998 999999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGG 219 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~ 219 (224)
+++||++|++..+|+|+||+|+||+++|++.++|...|++|||||||+++++|...
T Consensus 164 i~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~S 219 (347)
T COG1171 164 IALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYAS 219 (347)
T ss_pred HHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHH
Confidence 99999999965579999999999999999999999999999999999999987653
No 9
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.4e-52 Score=356.79 Aligned_cols=205 Identities=47% Similarity=0.805 Sum_probs=190.3
Q ss_pred hhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHH
Q 027405 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91 (224)
Q Consensus 12 ~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~ 91 (224)
+...+++|||+++++++...+.+||+|+|++|||||||+|++.+++.++.++|.+.++ ++||++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 4567999999999999887788999999999999999999999999999999987776 579999999999999999999
Q ss_pred cCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHh
Q 027405 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 171 (224)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q 171 (224)
+|++|+||||+++++.|+++++.+||+|+.++...+++++.+.+++++++. +.+|++||+|+.|+..||.+++.||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987556888889999998887 4568999999999888899999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 172 ~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
+++++|+||+|+|+||+++|++.+||+.+|++|||+|||.+++.+.+
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g 206 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG 206 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC
Confidence 97679999999999999999999999999999999999999877754
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=5.9e-52 Score=355.81 Aligned_cols=208 Identities=65% Similarity=1.064 Sum_probs=189.3
Q ss_pred hcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHc
Q 027405 13 TELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK 92 (224)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~ 92 (224)
...+++|||+++++ ....+.+||+|+|++|||||||||++.+++.++.++|.+.+| .+|+++|+||||+|+|++|+.+
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 445678999999999999999999999999999999987776 5699999999999999999999
Q ss_pred CCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhHHHhHHHHHHHh
Q 027405 93 GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN-SYVLQQFENPANPKIHYETTGPEIWKG 171 (224)
Q Consensus 93 g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~a~Ei~~q 171 (224)
|++|+||||+++++.|+++++.+||+|+.++.+.+++++.+.+++++++.++ +++++||+|+.|++.||.|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754456788889998887643 669999999998899999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCC
Q 027405 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222 (224)
Q Consensus 172 ~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~ 222 (224)
+++.||+||+|+|+||+++|++.+|++.+|++|||+|||.+++++.++.++
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~ 210 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPG 210 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCC
Confidence 976799999999999999999999999999999999999999888765443
No 11
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-51 Score=365.38 Aligned_cols=206 Identities=24% Similarity=0.323 Sum_probs=192.2
Q ss_pred chhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
.++..+++++.+.+++|||+++++|++..+++||+|+|++|||||||+|++.+.+..+.+.+. .++||++|+||||
T Consensus 5 ~~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg 80 (403)
T PRK08526 5 NKIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHA 80 (403)
T ss_pred HHHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHH
Confidence 345678899999999999999999998888999999999999999999999999998887644 2579999999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+++|++|+.+|++|+||||++++..|++.++.|||+|+.++. +|+++.+.+++++++. +++|++||+|+.+ ++||+
T Consensus 81 ~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~g 156 (403)
T PRK08526 81 QGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQG 156 (403)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhH
Confidence 999999999999999999999999999999999999999985 7999999999998886 7899999999987 89999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
|+|+||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||||||++++++.
T Consensus 157 tia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~ 210 (403)
T PRK08526 157 TIALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMY 210 (403)
T ss_pred HHHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHH
Confidence 99999999995 7999999999999999999999999999999999999998873
No 12
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.4e-50 Score=351.78 Aligned_cols=208 Identities=48% Similarity=0.795 Sum_probs=185.4
Q ss_pred hhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHH
Q 027405 7 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA 86 (224)
..++.+.+.+++|||++++++++..+.+||+|+|++|||||||+|++.+++.+++++|.+.++ .+||++|+||||+|+|
T Consensus 2 ~~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA 80 (330)
T PRK10717 2 KIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLA 80 (330)
T ss_pred chhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHH
Confidence 356788999999999999999988888999999999999999999999999999999987776 5699999999999999
Q ss_pred HHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC-----C-hHHHHHHHHHHHHhC-CCeEEeCCCCCCcchHh
Q 027405 87 FMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-----G-MKGAVQKAEEIRDKT-PNSYVLQQFENPANPKI 159 (224)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~-----~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~ 159 (224)
++|+.+|++|+||||+++++.|+++++.+||+|+.++... + .+.+.+.++++.++. .+++|++||+|+.+++.
T Consensus 81 ~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (330)
T PRK10717 81 LVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREA 160 (330)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHH
Confidence 9999999999999999999999999999999999998630 1 122344455554443 37899999999998778
Q ss_pred HHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 027405 160 HYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 215 (224)
Q Consensus 160 g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~ 215 (224)
||.|++.||++|++..+|+||+|+|+||+++|++.+||+.+|++|||+|||++++.
T Consensus 161 g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~ 216 (330)
T PRK10717 161 HYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSAL 216 (330)
T ss_pred HHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCcc
Confidence 99999999999997679999999999999999999999999999999999999853
No 13
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=3.7e-51 Score=354.23 Aligned_cols=206 Identities=21% Similarity=0.297 Sum_probs=191.4
Q ss_pred chhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
.++..+++++...+++|||+++++|+...+.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||
T Consensus 4 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g 79 (322)
T PRK07476 4 ADIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHG 79 (322)
T ss_pred HHHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHH
Confidence 356778999999999999999999998888899999999999999999999999999998876 2459999999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+|+|++|+.+|++|+||||++++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++|++|+.+ +.|++
T Consensus 80 ~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~ 155 (322)
T PRK07476 80 RALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQG 155 (322)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechh
Confidence 999999999999999999999999999999999999999985 6788989999998876 7899999999998 78899
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
|+++||++|++ ++|+||+|+|+||+++|++.+||..+|++|||||||++++++.
T Consensus 156 t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~ 209 (322)
T PRK07476 156 TIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMH 209 (322)
T ss_pred HHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 99999999995 7999999999999999999999999999999999999887654
No 14
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=6.2e-51 Score=353.76 Aligned_cols=206 Identities=24% Similarity=0.362 Sum_probs=189.7
Q ss_pred chhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
..+..+++++.+.+++|||+++++|++..+.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||
T Consensus 12 ~~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g 87 (333)
T PRK08638 12 DDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHA 87 (333)
T ss_pred HHHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHH
Confidence 345678999999999999999999988778899999999999999999999999998776432 2579999999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+|+|++|+.+|++|+||||++.++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ..||.
T Consensus 88 ~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~ 163 (333)
T PRK08638 88 QGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQG 163 (333)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hcccc
Confidence 999999999999999999999999999999999999999984 7889999999998886 7899999999988 78999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
|+++||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||||||+++++|+
T Consensus 164 t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~ 217 (333)
T PRK08638 164 TIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMA 217 (333)
T ss_pred HHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 9999999999 47999999999999999999999999999999999999987654
No 15
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=6.3e-51 Score=362.77 Aligned_cols=205 Identities=25% Similarity=0.405 Sum_probs=191.6
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
+...+++++...+++|||+++++|++..+++||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+
T Consensus 8 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 83 (404)
T PRK08198 8 DIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQ 83 (404)
T ss_pred HHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHH
Confidence 44568899999999999999999998888899999999999999999999999999886654 36899999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
++|++|+.+|++|+||||++++..|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|
T Consensus 84 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t 159 (404)
T PRK08198 84 GVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGT 159 (404)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHH
Confidence 99999999999999999999999999999999999999984 7899999999998886 8999999999987 789999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
+|.||++|++ ++|+||+|+|+||+++|++.+||+.+|++|||||||++++++.
T Consensus 160 ~a~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~ 212 (404)
T PRK08198 160 IGLEILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMP 212 (404)
T ss_pred HHHHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHH
Confidence 9999999995 7999999999999999999999999999999999999998874
No 16
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-51 Score=344.92 Aligned_cols=216 Identities=68% Similarity=1.102 Sum_probs=206.8
Q ss_pred hhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 027405 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 87 (224)
+.....+.+|+|||+.+.+....+.++|++|+|.+||+||.|||.++.|+.+|+++|.+.||..+++++||||+|.+||+
T Consensus 42 ~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~ 121 (362)
T KOG1252|consen 42 ILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAY 121 (362)
T ss_pred hhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHH
Confidence 45667899999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHH---HHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhH
Q 027405 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (224)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (224)
+|+..|++|+++||++++.+|+..++.+|++|+++++...++. +...+.++..+.++.|.++||.||.|+..||.++
T Consensus 122 ~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~tt 201 (362)
T KOG1252|consen 122 MAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETT 201 (362)
T ss_pred HHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccc
Confidence 9999999999999999999999999999999999997666655 8889999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCC
Q 027405 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGG 223 (224)
Q Consensus 165 a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~ 223 (224)
++||++|+.+.+|.+|.++|||||++|+.+++|+.+|+++|++|||.+|..+.++.++|
T Consensus 202 g~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~ 260 (362)
T KOG1252|consen 202 GPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP 260 (362)
T ss_pred cHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC
Confidence 99999999989999999999999999999999999999999999999999999998887
No 17
>PLN02970 serine racemase
Probab=100.00 E-value=1.2e-50 Score=351.73 Aligned_cols=205 Identities=18% Similarity=0.252 Sum_probs=189.1
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
++..+.+.+...+++|||++++++++..+.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+
T Consensus 13 ~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~ 88 (328)
T PLN02970 13 SIREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAA 88 (328)
T ss_pred HHHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHH
Confidence 44566788999999999999999988778899999999999999999999999999886554 26799999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ..||+|
T Consensus 89 alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t 164 (328)
T PLN02970 89 ALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGT 164 (328)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHH
Confidence 99999999999999999999999999999999999999995 6888888999998875 8999999999987 689999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
+++||++|++ .||+||+|+|+||+++|++.+||+.+|++|||+|||++++++.
T Consensus 165 ~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~ 217 (328)
T PLN02970 165 IALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAA 217 (328)
T ss_pred HHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHH
Confidence 9999999995 6999999999999999999999999999999999999998764
No 18
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.5e-50 Score=367.10 Aligned_cols=202 Identities=28% Similarity=0.393 Sum_probs=187.4
Q ss_pred hHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
..++...+.+|||+++++|++..+++||+|+|++|||||||+|+|.+++..+.++.. .+.||++|+||||+++|++
T Consensus 28 ~~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~a 103 (521)
T PRK12483 28 AARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALA 103 (521)
T ss_pred HHHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHH
Confidence 357788999999999999998888999999999999999999999999988764432 2469999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHH
Q 027405 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (224)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei 168 (224)
|+.+|++|+||||++++..|++.++.|||+|+.++. +|+++.+.+++++++. +++|++||+|+.+ ++|++|+|.||
T Consensus 104 A~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI 179 (521)
T PRK12483 104 AARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEI 179 (521)
T ss_pred HHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHH
Confidence 999999999999999999999999999999999984 7999999999999887 7899999999988 88999999999
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 169 ~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
++|+++.+|+||+|+|+||+++|++.++|..+|++|||||||+++++|..
T Consensus 180 ~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~ 229 (521)
T PRK12483 180 LRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQA 229 (521)
T ss_pred HHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhH
Confidence 99997569999999999999999999999999999999999999988763
No 19
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-50 Score=360.40 Aligned_cols=204 Identities=24% Similarity=0.322 Sum_probs=190.0
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
++..++.++...+++|||++++.|++..|.+||+|+|++|||||||+|++.+++..+.+.+. ...||++|+||||+
T Consensus 11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~ 86 (406)
T PRK06382 11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQ 86 (406)
T ss_pred HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHH
Confidence 44567899999999999999999998888899999999999999999999999998876553 24599999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
|+|++|+.+|++|+||||++++..|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.|++|
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t 162 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGT 162 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHH
Confidence 99999999999999999999999999999999999999985 7899999999998886 8899999999987 889999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~ 216 (224)
+++||++|++ .+|+||+|+|+||+++|++.++|+.+|++|||||||++++++
T Consensus 163 ~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~ 214 (406)
T PRK06382 163 IGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSM 214 (406)
T ss_pred HHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 9999999995 799999999999999999999999999999999999999876
No 20
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.5e-49 Score=339.90 Aligned_cols=202 Identities=61% Similarity=1.016 Sum_probs=184.2
Q ss_pred CCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeE
Q 027405 17 GKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRL 96 (224)
Q Consensus 17 ~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~ 96 (224)
++|||+++++|+...+.+||+|+|++|||||||+|++.+++.++.++|.+.++ .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 58999999999987888999999999999999999999999999999876555 56999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhCCCEEEEeCCCC--ChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHhhCC
Q 027405 97 IITMPASMSLERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 174 (224)
Q Consensus 97 ~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~ 174 (224)
+||||++++..|+++++.+||+|+.++... +.+++.+.+++++++.++++|++||+||.++..|++|++.||.+|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999632 337888899998887658999999999999555556999999999976
Q ss_pred CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC
Q 027405 175 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGG 219 (224)
Q Consensus 175 ~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~ 219 (224)
.||+||+|+|+||+++|++.+|++.+|++|||||||++++++.++
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~ 204 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGG 204 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCC
Confidence 799999999999999999999999999999999999999887443
No 21
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=5.3e-50 Score=346.15 Aligned_cols=205 Identities=20% Similarity=0.298 Sum_probs=189.3
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
+++.+++++...+++|||+++++|++..+.+||+|+|++|||||||||++.+++.++.+... ..++|++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 55778999999999999999999988778899999999999999999999999998764322 25699999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHH
Confidence 99999999999999999999999999999999999999995 6888888999998876 8899999999988 789999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
+++||++|++ ++|+||+|+|+||+++|++.+||+.+|++|||||||++++++.
T Consensus 157 ~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~ 209 (317)
T TIGR02991 157 LGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMK 209 (317)
T ss_pred HHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 9999999995 6899999999999999999999999999999999999888775
No 22
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-50 Score=347.98 Aligned_cols=205 Identities=21% Similarity=0.271 Sum_probs=188.2
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
+++.+++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.+++.. ...||++|+||||+
T Consensus 7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~---~~~vv~aSsGN~g~ 83 (322)
T PRK06110 7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPR---VRGVISATRGNHGQ 83 (322)
T ss_pred HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCC---CceEEEECCCHHHH
Confidence 446678999999999999999999987888999999999999999999999999999887643 24599999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
++|++|+++|++|+||||+++++.|+++++.+||+|+.++. +++++.+.+++++++. ++||+++| |+.+ +.||.|
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t 158 (322)
T PRK06110 84 SVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVAT 158 (322)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChH-Hhccch
Confidence 99999999999999999999999999999999999999974 7899999999998886 78999998 5665 689999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
+++||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||+|||++++++.
T Consensus 159 ~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~ 211 (322)
T PRK06110 159 YALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYA 211 (322)
T ss_pred HHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHH
Confidence 9999999995 7999999999999999999999999999999999999988764
No 23
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.3e-49 Score=351.50 Aligned_cols=207 Identities=37% Similarity=0.628 Sum_probs=180.2
Q ss_pred hhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 027405 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 87 (224)
....+.+.+++|||++++.|+...+.+||+|+|++|||||||||++.+++.+|.++|.+.++ .+|+++||||||+++|+
T Consensus 43 ~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~-g~VveaSSGN~g~alA~ 121 (423)
T PLN02356 43 PRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTEGSAGSTAISLAT 121 (423)
T ss_pred hhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCC-CEEEEeCCHHHHHHHHH
Confidence 34567788999999999999887888999999999999999999999999999999887676 46888999999999999
Q ss_pred HHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC-----CCCh-HHHH---HHHHHHHHh-----------------
Q 027405 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-----ARGM-KGAV---QKAEEIRDK----------------- 141 (224)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~-----~~~~-~~~~---~~a~~~~~~----------------- 141 (224)
+|+.+|++|+||||+++++.|+++++.|||+|+.+++ ..++ ..+. ..+++++++
T Consensus 122 ~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~ 201 (423)
T PLN02356 122 VAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNG 201 (423)
T ss_pred HHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999999999999999999999999999964 1222 1111 223444433
Q ss_pred ---------------CCCeEEeCCCCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEE
Q 027405 142 ---------------TPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLY 206 (224)
Q Consensus 142 ---------------~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vi 206 (224)
.++.+|++||+|+.|+..|+..+|+||++|+++++|+||+|+||||+++|++++||+.+|++|||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVi 281 (423)
T PLN02356 202 CISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCF 281 (423)
T ss_pred ccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEE
Confidence 14779999999999988877777999999997789999999999999999999999999999999
Q ss_pred EEeCCCCcc
Q 027405 207 GVEPVESAV 215 (224)
Q Consensus 207 gve~~~~~~ 215 (224)
+|||.+|+.
T Consensus 282 gVep~~s~~ 290 (423)
T PLN02356 282 LIDPPGSGL 290 (423)
T ss_pred EEecCCCcc
Confidence 999999863
No 24
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=4.7e-50 Score=347.31 Aligned_cols=204 Identities=20% Similarity=0.286 Sum_probs=188.4
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
++..+++++...+++|||++++++++..+.+||+|+|++|||||||||++.+++.++.+++. ..+||++|+||||+
T Consensus 10 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 85 (321)
T PRK07048 10 DVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQ 85 (321)
T ss_pred HHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHH
Confidence 55678899999999999999999987778899999999999999999999999998875432 25699999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
|+|++|+.+|++|++|||+++++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.|++|
T Consensus 86 alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t 161 (321)
T PRK07048 86 AIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGT 161 (321)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccch
Confidence 99999999999999999999999999999999999999995 5788888899998886 7999999999987 789999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~ 216 (224)
+++||++|++ .||+||+|+|+||+++|++.++|+.+|++|||||||++++++
T Consensus 162 ~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~ 213 (321)
T PRK07048 162 AAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDG 213 (321)
T ss_pred HHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhH
Confidence 9999999995 799999999999999999999999999999999999998753
No 25
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=6e-50 Score=357.57 Aligned_cols=206 Identities=25% Similarity=0.394 Sum_probs=187.0
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
++..+++++.+.+++|||+++++|++..+.+||+|+|++|||||||+|++.+++.++.+... ..+||++|+||||+
T Consensus 11 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~ 86 (420)
T PRK08639 11 DIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQ 86 (420)
T ss_pred HHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 45668899999999999999999988888899999999999999999999999988543221 25799999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE---EeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhH
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV---LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 160 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (224)
++|++|+.+|++|+||||++++..|++.++.|||+|+ .++ .+++++.+.+++++++. +++|++||+|+.+ ++|
T Consensus 87 alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g--~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G 162 (420)
T PRK08639 87 GVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVG--DTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAG 162 (420)
T ss_pred HHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeC--cCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcc
Confidence 9999999999999999999999999999999999743 333 47899999999999886 7999999999988 799
Q ss_pred HHhHHHHHHHhhCCC--CCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 161 YETTGPEIWKGTGGK--IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 161 ~~t~a~Ei~~q~~~~--~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
++|+|+||++|+++. ||+||+|+|+||+++|++.++|+.+|++|||||||+++++|.
T Consensus 163 ~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~ 221 (420)
T PRK08639 163 QGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMK 221 (420)
T ss_pred hhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHH
Confidence 999999999999755 999999999999999999999999999999999999998875
No 26
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.4e-49 Score=363.04 Aligned_cols=200 Identities=25% Similarity=0.395 Sum_probs=185.5
Q ss_pred HhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 027405 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 89 (224)
.++.+.+.+|||+++++|++..+.+||+|+|++|||||||+|++.+++.++.++.. ...||++|+||||+++|++|
T Consensus 101 ~~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA 176 (591)
T PLN02550 101 AKVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSA 176 (591)
T ss_pred hhhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHH
Confidence 35668899999999999998889999999999999999999999999998865432 24599999999999999999
Q ss_pred HHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHH
Q 027405 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (224)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~ 169 (224)
+++|++|+||||++++..|++.++.|||+|+.++. +|+++.+.+++++++. +++|++||+|+.+ ++|++|+|+||+
T Consensus 177 ~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~ 252 (591)
T PLN02550 177 QRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIV 252 (591)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999984 7899999999998886 7899999999988 799999999999
Q ss_pred HhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 170 ~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
+|+++.+|+||+|+|+||+++|++.++|+.+|++|||||||+++++|.
T Consensus 253 eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~ 300 (591)
T PLN02550 253 RQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMA 300 (591)
T ss_pred HHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 999656999999999999999999999999999999999999998885
No 27
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.2e-49 Score=354.28 Aligned_cols=207 Identities=24% Similarity=0.364 Sum_probs=187.5
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
++..+.+++...+++|||+++++|++..+.+||+|+|++|||||||+|++.+++.++.+... ..+||++|+||||+
T Consensus 2 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~ 77 (409)
T TIGR02079 2 DIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQ 77 (409)
T ss_pred hHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 35667899999999999999999998888899999999999999999999999987543321 25699999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE---EEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhH
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL---VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 160 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (224)
++|++|+.+|++|+||||++++..|++.++.+||+| +.++ .+|+++.+.+++++++. +++|++||+|+.+ ++|
T Consensus 78 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g 153 (409)
T TIGR02079 78 GFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEG 153 (409)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhh
Confidence 999999999999999999999999999999999974 4444 47899999999998886 7899999999987 789
Q ss_pred HHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 161 YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 161 ~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
++|+++||++|++..||+||+|+|+||+++|++.+||+.+|++|||||||+++++|..
T Consensus 154 ~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~ 211 (409)
T TIGR02079 154 QGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKA 211 (409)
T ss_pred hHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHH
Confidence 9999999999997569999999999999999999999999999999999999988764
No 28
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.6e-49 Score=345.52 Aligned_cols=205 Identities=20% Similarity=0.282 Sum_probs=188.2
Q ss_pred chhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
.+++.+++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.++|.+. ++||++|+||||
T Consensus 8 ~~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g 84 (338)
T PRK06608 8 QNIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHG 84 (338)
T ss_pred HHHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHH
Confidence 45677889999999999999999999888889999999999999999999999999999988642 579999999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+++|++|+.+|++|++|||+++++.|+++++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.+ ++|++
T Consensus 85 ~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~ 158 (338)
T PRK06608 85 QAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAG 158 (338)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHH
Confidence 999999999999999999999999999999999999999973 4677777777 544 48999999999988 78999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~ 216 (224)
|++.||++|++.++|+||+|+|+||+++|++.++|+.+|++|||||||++++++
T Consensus 159 t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~ 212 (338)
T PRK06608 159 TLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDA 212 (338)
T ss_pred HHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHH
Confidence 999999999976899999999999999999999999999999999999999765
No 29
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.1e-49 Score=350.01 Aligned_cols=198 Identities=22% Similarity=0.296 Sum_probs=179.2
Q ss_pred cCCCceeecccccCcCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 027405 16 IGKTPLVYLNRIVDGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE----------- 70 (224)
Q Consensus 16 ~~~TPl~~~~~l~~~~~--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~----------- 70 (224)
+++|||++++.|+...+ .+||+|+|++|| |||||||++.+++.. ++++|.+.|+.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999886543 799999999999 999999999999964 77888888774
Q ss_pred -----cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCe
Q 027405 71 -----SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145 (224)
Q Consensus 71 -----~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (224)
.+||++|+||||+++|++|+.+|++|+||||++++..|+++++.+||+|+.++. +++++.+.+++++++.+++
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 489999999999999999999999999999999999999999999999999985 7899999999999887678
Q ss_pred EEeCCCCCCcchHhHHHhHHHHHHHhhCC---C-----CCEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccc
Q 027405 146 YVLQQFENPANPKIHYETTGPEIWKGTGG---K-----IDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAVL 216 (224)
Q Consensus 146 ~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~---~-----~d~iv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigve~~~~~~~ 216 (224)
+|+++++++ +.++||+|+|+||++|+++ + ||+||+|+|+||+++|++.+||+. .|++|||+|||++++++
T Consensus 208 ~~v~~~n~~-~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSR-DLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCch-hHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 899996555 4589999999999999952 3 458999999999999999999997 79999999999999876
No 30
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-49 Score=353.47 Aligned_cols=206 Identities=23% Similarity=0.292 Sum_probs=190.2
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
++..+++++...+++|||+++++|+...+.+||+|+|++|||||||||++.+++.++.++.. ...||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 84 (403)
T PRK07334 9 DIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQ 84 (403)
T ss_pred HHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHH
Confidence 45678899999999999999999988778899999999999999999999999998765432 24699999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.||+|
T Consensus 85 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t 160 (403)
T PRK07334 85 GVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGT 160 (403)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHH
Confidence 99999999999999999999999999999999999999984 7899999999998886 8999999999988 799999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
+++||++|++ ++|+||+|+|+||+++|++.+||+.+|++|||||||+++++++.
T Consensus 161 ~~~Ei~~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~ 214 (403)
T PRK07334 161 VALEMLEDAP-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYA 214 (403)
T ss_pred HHHHHHhcCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHH
Confidence 9999999994 79999999999999999999999999999999999999988753
No 31
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=5.2e-49 Score=355.21 Aligned_cols=208 Identities=47% Similarity=0.790 Sum_probs=187.4
Q ss_pred hHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
++.+...+++|||+++++|+...+.+||+|+|++|||||||+|++.+++.++.++|.+.+| ++||++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 3456778999999999999987788999999999999999999999999999999988777 679999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChH---HHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHH
Q 027405 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK---GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (224)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a 165 (224)
|+.+|++|+||||+++++.|+++++.+||+|+.++....++ ...+.+++++++.++.+|++||+|+.|+..||.++|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998632233 235667778777556788999999999888999999
Q ss_pred HHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 166 ~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
+||++|+++.||+||+|+|||||++|++.+||+.+|++|||||||++++ +++
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~-~~~ 212 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI-LAQ 212 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc-ccC
Confidence 9999999768999999999999999999999999999999999999986 443
No 32
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=3.5e-49 Score=357.95 Aligned_cols=202 Identities=28% Similarity=0.400 Sum_probs=187.2
Q ss_pred hHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
..++.+.+.+|||+++++|++..+.+||+|+|++|||||||+|++.+++..+.++.. ..+||++|+||||+++|++
T Consensus 8 ~~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~a 83 (499)
T TIGR01124 8 TARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFS 83 (499)
T ss_pred HhHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHH
Confidence 357889999999999999998888999999999999999999999999988754432 2579999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHH
Q 027405 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (224)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei 168 (224)
|+++|++|+||||++++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++|++|+|.||
T Consensus 84 a~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI 159 (499)
T TIGR01124 84 AARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEI 159 (499)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHH
Confidence 999999999999999999999999999999999984 7899999999999886 7899999999987 89999999999
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 169 ~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
++|++.++|+||+|+|+||+++|++.++|..+|++|||||||+++++|.+
T Consensus 160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~ 209 (499)
T TIGR01124 160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQ 209 (499)
T ss_pred HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 99997679999999999999999999999999999999999999988754
No 33
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=3.7e-49 Score=348.91 Aligned_cols=190 Identities=25% Similarity=0.384 Sum_probs=179.6
Q ss_pred CceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 027405 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLII 98 (224)
Q Consensus 19 TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i 98 (224)
|||+++++|++..+.+||+|+|++|||||||+|++.+++.++.+++. ..+||++|+||||+++|++|+.+|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999998888999999999999999999999999999998875 25799999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHhhCCCCCE
Q 027405 99 TMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDA 178 (224)
Q Consensus 99 vvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~ 178 (224)
|||++++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|++.||++|++ ++|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhCC-CCCE
Confidence 99999999999999999999999984 7899999999998886 8899999999987 7999999999999995 7999
Q ss_pred EEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 179 LVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 179 iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
||+|+|+||+++|++.++|+.+|++|||||||++++++.
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~ 190 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMY 190 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 999999999999999999999999999999999998864
No 34
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=5e-49 Score=340.29 Aligned_cols=207 Identities=22% Similarity=0.271 Sum_probs=189.1
Q ss_pred chhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
.++..+++++.+.+++|||++++.|++..+.+||+|+|++|||||||||++.+++.++.++.. ..++|++|+||||
T Consensus 5 ~~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g 80 (317)
T PRK06815 5 DAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHG 80 (317)
T ss_pred HHHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHH
Confidence 456778899999999999999999988778899999999999999999999999987654322 2569999999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+|+|++|+.+|++|+||||+++++.|+..++.+||+|+.++. +++++...+++++++. +++|++||+|+.+ +.||+
T Consensus 81 ~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~ 156 (317)
T PRK06815 81 QGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQG 156 (317)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchh
Confidence 999999999999999999999999999999999999999996 6888888999998876 7899999999887 68999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
++++||++|++ .+|+||+|+|+||+++|++.+||+.+|++|||||||++++++..
T Consensus 157 t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~ 211 (317)
T PRK06815 157 TIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYT 211 (317)
T ss_pred HHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHH
Confidence 99999999995 69999999999999999999999999999999999999988753
No 35
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=6.1e-49 Score=337.77 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=191.8
Q ss_pred chhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
.+++++++.|.+.+++|||+++++|+...+.+||+|+|++|||||||||++.+++.++.+++. ..+||++|+||||
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g 77 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA 77 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence 467889999999999999999999988778899999999999999999999999999988763 2569999999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+|+|++|+.+|++|++|||++.+..|+++++.+||+|+.++. +++++.+.+++++++. +++|++|++|+.+ ..|+.
T Consensus 78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~ 153 (304)
T cd01562 78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQG 153 (304)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHH
Confidence 999999999999999999999999999999999999999996 6899999999999886 7999999999987 78999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
++++||++|++ .||+||+|+|+|||++|++.+||+.+|++|||+|||.+++++.
T Consensus 154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~ 207 (304)
T cd01562 154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMA 207 (304)
T ss_pred HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 99999999996 5999999999999999999999999999999999999987764
No 36
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=4.8e-49 Score=344.41 Aligned_cols=202 Identities=24% Similarity=0.334 Sum_probs=183.7
Q ss_pred hHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
.++++..+++|||+++++|+...+.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 19 ~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~ 93 (351)
T PRK06352 19 TPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAY 93 (351)
T ss_pred cCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 346788999999999999987777899999999999999999999999999999875 679999999999999999
Q ss_pred HHHcCCeEEEEEcCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHH
Q 027405 89 AAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 89 a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 167 (224)
|+.+|++|+||||++ .+..|+.+++.+||+|+.++. +++++.+.+++++++. ++++++ +.|+.+ +.||.|+++|
T Consensus 94 aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~E 168 (351)
T PRK06352 94 ATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFE 168 (351)
T ss_pred HHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHH
Confidence 999999999999997 589999999999999999995 6889999999998875 666666 458888 6899999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCC-----cEEEEEeCCCCccccCCC
Q 027405 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-----IKLYGVEPVESAVLSGGK 220 (224)
Q Consensus 168 i~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~-----~~vigve~~~~~~~~~~~ 220 (224)
|++|++..||+||+|+|+||+++|++.+||+++|+ +|||+|||++++++..|.
T Consensus 169 I~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~ 226 (351)
T PRK06352 169 ICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGK 226 (351)
T ss_pred HHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCC
Confidence 99999767999999999999999999999999887 899999999998776553
No 37
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-48 Score=339.13 Aligned_cols=194 Identities=23% Similarity=0.307 Sum_probs=179.9
Q ss_pred hhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHH
Q 027405 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~ 83 (224)
++..++++++..+.+|||++++.+ +||+|+|++|||||||+|++.+++.++.+++. .+.||++|+||||+
T Consensus 25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~ 94 (349)
T PRK08813 25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQ 94 (349)
T ss_pred HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHH
Confidence 456788999999999999998765 49999999999999999999999999999886 24699999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++. +|+++.+.+++++++. +++|++||+|+.+ ++||+|
T Consensus 95 alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~T 170 (349)
T PRK08813 95 GVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGT 170 (349)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHH
Confidence 99999999999999999999999999999999999999985 7999999999999886 8999999999998 789999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~ 216 (224)
+|+||++|. ||+||+|+|+||+++|++.+||+ +++|||||||++++++
T Consensus 171 ig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~ 218 (349)
T PRK08813 171 VGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSM 218 (349)
T ss_pred HHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchH
Confidence 999999874 79999999999999999999996 4699999999998775
No 38
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=9.2e-49 Score=356.23 Aligned_cols=202 Identities=29% Similarity=0.417 Sum_probs=187.2
Q ss_pred hHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
..++.+.+.+|||+++++|++..+.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|++
T Consensus 11 ~~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~a 86 (504)
T PRK09224 11 TARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALS 86 (504)
T ss_pred HHHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHH
Confidence 457889999999999999998888999999999999999999999999998764322 2579999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHH
Q 027405 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (224)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei 168 (224)
|+.+|++|+||||++++..|++.++.+||+|+.++. +|+++.+.+++++++. +++|++||+|+.+ ++|++|+++||
T Consensus 87 a~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI 162 (504)
T PRK09224 87 AARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEI 162 (504)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHH
Confidence 999999999999999999999999999999999984 7999999999998886 8899999999988 79999999999
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 169 ~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
++|+++.+|+||+|+||||+++|++.++|..+|++|||||||+++++|..
T Consensus 163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~ 212 (504)
T PRK09224 163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKA 212 (504)
T ss_pred HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 99996559999999999999999999999999999999999999988753
No 39
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=1.2e-48 Score=348.87 Aligned_cols=199 Identities=22% Similarity=0.294 Sum_probs=179.2
Q ss_pred cCCCceeecccccCcCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 027405 16 IGKTPLVYLNRIVDGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE----------- 70 (224)
Q Consensus 16 ~~~TPl~~~~~l~~~~~--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~----------- 70 (224)
+++|||++++.+++..+ .+||+|+|++|| |||||+|++.+++.. +++.|.+.|+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999999886553 699999999999 999999999999875 55777766653
Q ss_pred -----cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCe
Q 027405 71 -----SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145 (224)
Q Consensus 71 -----~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (224)
.+||++|+||||+|+|++|+.+|++|+||||++++..|+++++.|||+|+.++. +|+++.+.+++++++.+++
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~ 230 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNC 230 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCe
Confidence 479999999999999999999999999999999999999999999999999995 7899999999998876568
Q ss_pred EEeCCCCCCcchHhHHHhHHHHHHHhhCC--------CCCEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccc
Q 027405 146 YVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAVL 216 (224)
Q Consensus 146 ~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~--------~~d~iv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigve~~~~~~~ 216 (224)
+|+++++++.+ ++||+|+++||++|+++ .||+||+|+|+||+++|++.+||+. .|++|||+|||++++++
T Consensus 231 ~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~ 309 (441)
T PRK02991 231 YFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCM 309 (441)
T ss_pred EeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHH
Confidence 99999877765 89999999999999963 2679999999999999999999997 68999999999999876
Q ss_pred c
Q 027405 217 S 217 (224)
Q Consensus 217 ~ 217 (224)
.
T Consensus 310 ~ 310 (441)
T PRK02991 310 L 310 (441)
T ss_pred H
Confidence 4
No 40
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.2e-48 Score=337.59 Aligned_cols=197 Identities=23% Similarity=0.292 Sum_probs=179.4
Q ss_pred CCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEE
Q 027405 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLI 97 (224)
Q Consensus 18 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ 97 (224)
+|||++++++++..+.+||+|+|++|||||||||++.+++.++.++|. .+ .++||++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999988778899999999999999999999999999999884 22 3679999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHhhCC--C
Q 027405 98 ITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--K 175 (224)
Q Consensus 98 ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~--~ 175 (224)
||||++++..|+++++.+||+|+.++.. .++++.+.+++++++.++++|++||+|+.+ ..||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCC
Confidence 9999999999999999999999999862 267777778888776557899999999988 78889999999999975 5
Q ss_pred CCEEEEccCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccC
Q 027405 176 IDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 176 ~d~iv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigve~~~~~~~~~ 218 (224)
||+||+|+|+||+++|++.+||+.+ |++|||||||++++++.+
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~ 200 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNA 200 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHH
Confidence 9999999999999999999999996 999999999999987754
No 41
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.6e-48 Score=335.99 Aligned_cols=201 Identities=22% Similarity=0.356 Sum_probs=183.9
Q ss_pred chhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
.++..+++++...+++|||++++.++.+ +.+||+|+|++|||||||||++.+++.++.+ + .++||++|+||||
T Consensus 8 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g 80 (310)
T PRK08246 8 SDVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAG 80 (310)
T ss_pred HHHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHH
Confidence 3566788999999999999999998866 6899999999999999999999999988765 2 2679999999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.||+
T Consensus 81 ~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~ 156 (310)
T PRK08246 81 LAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAG 156 (310)
T ss_pred HHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchH
Confidence 999999999999999999999999999999999999999985 6888999999988876 8999999999998 78999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
|+++||++|++ .||+||+|+|+||+++|++.+|+. ++|||+|||+++++++.
T Consensus 157 t~~~Ei~eq~~-~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~ 208 (310)
T PRK08246 157 TLGLEIEEQAP-GVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHA 208 (310)
T ss_pred HHHHHHHHhcC-CCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHH
Confidence 99999999994 799999999999999999999964 48999999999988763
No 42
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-49 Score=335.68 Aligned_cols=204 Identities=21% Similarity=0.261 Sum_probs=190.8
Q ss_pred hhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHH
Q 027405 7 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA 86 (224)
..+..+...+..|||.++-.||+..+.++|+|+|++||+||||.|++.+++.+.-++++ ...|+++|.||||+|+|
T Consensus 55 ~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~A 130 (457)
T KOG1250|consen 55 SAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAA 130 (457)
T ss_pred hhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHH
Confidence 45677889999999999988999999999999999999999999999999998887764 36799999999999999
Q ss_pred HHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHH
Q 027405 87 FMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~ 166 (224)
++|+++|++++||||..++.-|.+.++.+||+|+..+. +|+++...++++++++ ++.|+++||+|+. .+|++|++.
T Consensus 131 yaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~ 206 (457)
T KOG1250|consen 131 YAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGL 206 (457)
T ss_pred HHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHH
Confidence 99999999999999999999999999999999999994 8999999999999998 9999999999998 799999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
||.+|+...+++|+||||+||+++||+.++|+.+|+++|||||+++|+++-.
T Consensus 207 EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~ 258 (457)
T KOG1250|consen 207 EILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNA 258 (457)
T ss_pred HHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHH
Confidence 9999997666699999999999999999999999999999999999987643
No 43
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=3.3e-48 Score=344.93 Aligned_cols=200 Identities=23% Similarity=0.297 Sum_probs=180.8
Q ss_pred ccCCCceeecccccCc--------CCceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 027405 15 LIGKTPLVYLNRIVDG--------CVARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE---------- 70 (224)
Q Consensus 15 ~~~~TPl~~~~~l~~~--------~~~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~---------- 70 (224)
++++|||++++++++. .+.+||+|+|++|| |||||+|++.+++.. +++.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 9999999999998863 35799999999999 999999999999864 77888877763
Q ss_pred ------cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCC
Q 027405 71 ------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN 144 (224)
Q Consensus 71 ------~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (224)
.+||++|+||||+++|++|+.+|++|+||||++++..|++.++.|||+|+.++. +|+++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999995 799999999999988766
Q ss_pred eEEeCCCCCCcchHhHHHhHHHHHHHhhCC--------CCCEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCcc
Q 027405 145 SYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAV 215 (224)
Q Consensus 145 ~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~--------~~d~iv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigve~~~~~~ 215 (224)
+||+++ .|+.++++||+|+++||++|+++ .||+|++|+|+||+++|++.+||+. +|++|||+|||+++++
T Consensus 225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 788887 45566689999999999999952 4779999999999999999999997 8999999999999987
Q ss_pred cc
Q 027405 216 LS 217 (224)
Q Consensus 216 ~~ 217 (224)
+.
T Consensus 304 ~~ 305 (431)
T TIGR02035 304 ML 305 (431)
T ss_pred HH
Confidence 53
No 44
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=5.4e-48 Score=334.20 Aligned_cols=196 Identities=24% Similarity=0.331 Sum_probs=180.1
Q ss_pred cccCCCceeecccccCcCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHc
Q 027405 14 ELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK 92 (224)
Q Consensus 14 ~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~ 92 (224)
..+++|||+++++|+...| .+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|+.+
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~ 85 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLY 85 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHc
Confidence 5699999999999988777 699999999999999999999999999999886 6899999999999999999999
Q ss_pred CCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCC-CCcchHhHHHhHHHHHHHh
Q 027405 93 GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFE-NPANPKIHYETTGPEIWKG 171 (224)
Q Consensus 93 g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~a~Ei~~q 171 (224)
|++|+||||...+..|+++++.+||+|+.++. +++++.+.+++++++. ++|++++++ |+...+.||.|+++||++|
T Consensus 86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~q 162 (319)
T PRK06381 86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYEA 162 (319)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999996 5888999999998875 889998886 7632378999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhc------CCCcEEEEEeCCCCcccc
Q 027405 172 TGGKIDALVSGIGTGGTVTGAGKYLKEH------NPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 172 ~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~------~~~~~vigve~~~~~~~~ 217 (224)
++..||+||+|+|+||+++|++.+|++. .|++|||+|||.+++++.
T Consensus 163 l~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~ 214 (319)
T PRK06381 163 LGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIV 214 (319)
T ss_pred hCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHH
Confidence 9767999999999999999999999998 799999999999986653
No 45
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=9.6e-48 Score=336.76 Aligned_cols=202 Identities=24% Similarity=0.302 Sum_probs=182.4
Q ss_pred hHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
.++++.++++|||++++.|+...+.+||+|+|++|||||||||++.+++.+++++|. .+||++|+||||+++|++
T Consensus 22 ~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~ 96 (353)
T PRK07409 22 TPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAY 96 (353)
T ss_pred cCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 345788999999999999987777899999999999999999999999999998875 679999999999999999
Q ss_pred HHHcCCeEEEEEcCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHH
Q 027405 89 AAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 89 a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 167 (224)
|+.+|++|+||||++ .+..|+++++.+||+|+.++. +++++.+.+++++++. +++++++ .|+.+ +.||.|+++|
T Consensus 97 a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~E 171 (353)
T PRK07409 97 AARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFE 171 (353)
T ss_pred HHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHH
Confidence 999999999999997 689999999999999999995 7899999999998876 5777775 58888 6889999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCC
Q 027405 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLSGGK 220 (224)
Q Consensus 168 i~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigve~~~~~~~~~~~ 220 (224)
|++|++..+|+||+|+|+||+++|++.+|++..+ .+|||+|||.++++++.|.
T Consensus 172 I~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~ 230 (353)
T PRK07409 172 IVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGE 230 (353)
T ss_pred HHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCC
Confidence 9999976799999999999999999999998743 4999999999998877653
No 46
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=6.7e-48 Score=342.09 Aligned_cols=198 Identities=28% Similarity=0.251 Sum_probs=183.9
Q ss_pred hhhcccCCCceeecccccCcCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 027405 11 DVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 89 (224)
.++..+++|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|.++|. .+||++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 4788999999999999987777 599999999999999999999999999999886 6899999999999999999
Q ss_pred HHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHH
Q 027405 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (224)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~ 169 (224)
+.+|++|+||||++++..|+++++.+||+|+.++. +++++.+.+++++++. ++|+++++.||.+ ++|+.|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHH
Confidence 99999999999999999999999999999999995 6888889999988876 7999999999998 789999999999
Q ss_pred HhhCC-CCCEEEEccCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCcccc
Q 027405 170 KGTGG-KIDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 170 ~q~~~-~~d~iv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigve~~~~~~~~ 217 (224)
+|+++ .||+||+|+|+|++++|++.+|+++ .+.+|||+|||++++++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~ 278 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIV 278 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHH
Confidence 99975 4999999999999999999999987 388999999999987764
No 47
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.3e-47 Score=342.38 Aligned_cols=200 Identities=21% Similarity=0.265 Sum_probs=185.1
Q ss_pred hhhcccCCCceeecccccCcCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 027405 11 DVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 89 (224)
.+++.+++|||+++++|++..| .+||+|+|++|||||||||++.+++.+|.+.|. ++|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 4788999999999999988777 599999999999999999999999999999886 6789999999999999999
Q ss_pred HHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHH
Q 027405 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (224)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~ 169 (224)
+.+|++|+||||++++..|+.+++.+||+|+.+++ +|+++.+.+++++++.++++|++++.||.. ++|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHH
Confidence 99999999999999999999999999999999996 689999999999887657899999888887 789999999999
Q ss_pred HhhCCC-CCEEEEccCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccccC
Q 027405 170 KGTGGK-IDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 170 ~q~~~~-~d~iv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigve~~~~~~~~~ 218 (224)
+|+++. ||+||+|+|+||+++|++.+|+++ .+.+|||+|||++++++..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~ 290 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQ 290 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHH
Confidence 999754 999999999999999999999997 5889999999999877653
No 48
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.6e-47 Score=331.93 Aligned_cols=203 Identities=26% Similarity=0.291 Sum_probs=185.1
Q ss_pred hchhh--HhhhcccCCCceeecccccCcCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChH
Q 027405 5 KSVIA--KDVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNT 81 (224)
Q Consensus 5 ~~~~~--~~~~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~ 81 (224)
.+++. +++...+++|||+++++|+...+ .+||+|+|++|||||||+|++.+++.++.++|. ++||++|+|||
T Consensus 7 ~~~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~ 81 (324)
T cd01563 7 LLPVTEDDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNT 81 (324)
T ss_pred hCCCCCCCcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHH
Confidence 34544 56889999999999999987665 799999999999999999999999999998874 67999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHH
Q 027405 82 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHY 161 (224)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (224)
|+|+|++|+.+|++|++|||+++++.|+++++.+||+|+.++. +++++.+.+++++++. ++|++|++|+.+ +.||
T Consensus 82 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~ 156 (324)
T cd01563 82 SASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQ 156 (324)
T ss_pred HHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecch
Confidence 9999999999999999999999999999999999999999985 6889999999998875 789999999998 6799
Q ss_pred HhHHHHHHHhhCC-CCCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCcccc
Q 027405 162 ETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLS 217 (224)
Q Consensus 162 ~t~a~Ei~~q~~~-~~d~iv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigve~~~~~~~~ 217 (224)
.+++.||++|+++ .+|+||+|+|+||+++|++.+||+.+ +++|||||||.+++.++
T Consensus 157 ~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~ 219 (324)
T cd01563 157 KTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIV 219 (324)
T ss_pred hhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHH
Confidence 9999999999964 69999999999999999999999875 57999999999987664
No 49
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=5.7e-47 Score=331.52 Aligned_cols=201 Identities=26% Similarity=0.334 Sum_probs=179.3
Q ss_pred hHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
..+++..+++|||++++++++..+.+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++
T Consensus 19 ~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~ 93 (352)
T PRK06721 19 TPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAY 93 (352)
T ss_pred CCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 455788899999999999987777899999999999999999999999999999885 689999999999999999
Q ss_pred HHHcCCeEEEEEcCCC-CHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHH
Q 027405 89 AAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 89 a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 167 (224)
|+.+|++|+||||++. +..|+++++.+||+|+.++. +++++.+.+++++++. ++++++ +.|+.+ ..||.|+++|
T Consensus 94 aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~E 168 (352)
T PRK06721 94 AARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFE 168 (352)
T ss_pred HHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHH
Confidence 9999999999999974 78999999999999999985 7889999999998876 667765 568877 7889999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHH----HHHHHhcC-CCcEEEEEeCCCCccccCC
Q 027405 168 IWKGTGGKIDALVSGIGTGGTVTGA----GKYLKEHN-PEIKLYGVEPVESAVLSGG 219 (224)
Q Consensus 168 i~~q~~~~~d~iv~pvG~Gg~~~Gi----~~~~k~~~-~~~~vigve~~~~~~~~~~ 219 (224)
|++|++..||+||+|+|+||+++|+ ..++|+.+ |++|||||||++++++..|
T Consensus 169 i~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g 225 (352)
T PRK06721 169 ICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKG 225 (352)
T ss_pred HHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhC
Confidence 9999976799999999999999974 55556664 8999999999999877655
No 50
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=6.6e-47 Score=336.02 Aligned_cols=198 Identities=26% Similarity=0.281 Sum_probs=182.0
Q ss_pred HhhhcccCCCceeecccccCcCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 10 KDVTELIGKTPLVYLNRIVDGCVA-RIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
+.+++.+++|||+++++|+...+. +||+|+|++|||||||||++.+++.++.++|. ++||++|+||||.|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 368899999999999999877776 99999999999999999999999999999886 689999999999999999
Q ss_pred HHHcCCeEEEEEcCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHH
Q 027405 89 AAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 89 a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 167 (224)
|+.+|++|+||||++ ++..|+.+++.+||+|+.++. +++++.+.+++++++. ++|+++++ |+.+ .+||.|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHH
Confidence 999999999999997 789999999999999999985 7899999999998876 79999887 8887 7899999999
Q ss_pred HHHhhCC-CCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCcccc
Q 027405 168 IWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLS 217 (224)
Q Consensus 168 i~~q~~~-~~d~iv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigve~~~~~~~~ 217 (224)
|++|+++ .||+||+|+|+||+++|++.+|+++.+ .+|||+|||++++++.
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~ 265 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIV 265 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHH
Confidence 9999976 699999999999999999999998763 3799999999987663
No 51
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=8.7e-47 Score=339.30 Aligned_cols=195 Identities=20% Similarity=0.239 Sum_probs=179.6
Q ss_pred hhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 027405 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~ 90 (224)
.++..+++|||++++ ++...+.+||+|+|++|||||||||++.+++.+|++.|. ++||++|+||||.|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 367899999999984 666667799999999999999999999999999998875 67999999999999999999
Q ss_pred HcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHH
Q 027405 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (224)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ 170 (224)
.+|++|+||||++++..|+.+++.+||+|+.++. +++++.+.+++++++. ++|++++++||.+ ++|++|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHH
Confidence 9999999999999999999999999999999985 7899999999998775 8999999999998 8899999999999
Q ss_pred hhCCCCCEEEEccCchhHHHHHHHHHHhcCCC------cEEEEEeCCCCcccc
Q 027405 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE------IKLYGVEPVESAVLS 217 (224)
Q Consensus 171 q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~------~~vigve~~~~~~~~ 217 (224)
|++ ||+||+|+|+||+++|++.+|+++.++ +|||||||++++++.
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~ 259 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIA 259 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHH
Confidence 995 999999999999999999999998763 799999999887664
No 52
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.5e-46 Score=326.69 Aligned_cols=186 Identities=24% Similarity=0.271 Sum_probs=168.3
Q ss_pred hhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 027405 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~ 90 (224)
.++.++++|||++.+ +||+|+|++|||||||||++.+++.++.++|. +.|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 478999999999864 69999999999999999999999999999875 68999999999999999999
Q ss_pred HcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHH
Q 027405 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (224)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ 170 (224)
.+|++|+||||++++..|+.+++.+||+|+.++. +++++.+. +++. +++|++++.||.+ ++|++|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 67765443 4444 7788999999998 8899999999999
Q ss_pred hhCC-CCCEEEEccCchhHHHHHHHHHHhcCCC------cEEEEEeCCCCcccc
Q 027405 171 GTGG-KIDALVSGIGTGGTVTGAGKYLKEHNPE------IKLYGVEPVESAVLS 217 (224)
Q Consensus 171 q~~~-~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~------~~vigve~~~~~~~~ 217 (224)
|+++ .||+||+|+|+||+++|++.+|+++.+. +|||+|||++++++.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~ 243 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLC 243 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHH
Confidence 9974 5999999999999999999999998753 899999999987765
No 53
>PLN02569 threonine synthase
Probab=100.00 E-value=2.9e-46 Score=337.05 Aligned_cols=202 Identities=18% Similarity=0.147 Sum_probs=182.1
Q ss_pred hhhcccCCCceeecccccCc-CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 11 DVTELIGKTPLVYLNRIVDG-CV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~-~~-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
.++..+++|||+++++|++. .| .+||+|+|++|||||||||++..++..+.+.|........|+++|+||||.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 47889999999999999877 67 59999999999999999999999999998876522112579999999999999999
Q ss_pred HHHcCCeEEEEEcCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHH
Q 027405 89 AAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (224)
Q Consensus 89 a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~E 167 (224)
|+.+|++|+||||++ .+..|+.+++.+||+|+.+++ +|+++++.+++++++. ++|+++++ |+.+ ++||+|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHH
Confidence 999999999999996 788999999999999999996 8999999999988876 68999998 8888 7899999999
Q ss_pred HHHhhCCC-CCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCcccc
Q 027405 168 IWKGTGGK-IDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLS 217 (224)
Q Consensus 168 i~~q~~~~-~d~iv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigve~~~~~~~~ 217 (224)
|++|++++ ||+||+|+|+||+++|++.+||++. +.+|||+|||++++++.
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~ 337 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLY 337 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHH
Confidence 99999765 9999999999999999999999874 45799999999997776
No 54
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=2.3e-45 Score=306.44 Aligned_cols=187 Identities=43% Similarity=0.625 Sum_probs=175.4
Q ss_pred CceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 027405 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLII 98 (224)
Q Consensus 19 TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i 98 (224)
|||+++++++...+.+||+|+|++|||||||||++.+++.++.++|.+ ++ .+||++|+||+|.|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999998865 33 6799999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHhhCC-CCC
Q 027405 99 TMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KID 177 (224)
Q Consensus 99 vvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~-~~d 177 (224)
|+|.+.+..++++++.+|++|+.++. +++++.+.+++++++.++++|+++|.|+.+ +.|+.+++.||.+|++. .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999996 589999999999998558999999999988 67888999999999976 599
Q ss_pred EEEEccCchhHHHHHHHHHHhcCCCcEEEEEeC
Q 027405 178 ALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEP 210 (224)
Q Consensus 178 ~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~ 210 (224)
+||+|+|+||+++|++.+|++.+|.+|||+|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 999999999999999999999999999999998
No 55
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=7.6e-46 Score=328.81 Aligned_cols=209 Identities=24% Similarity=0.220 Sum_probs=182.6
Q ss_pred hchhhHhh--hcccCCCceeecccccCcCC-ceEEEEeCCC-CCCCChhhHHHHHHHHHHHHc--CC-C-----------
Q 027405 5 KSVIAKDV--TELIGKTPLVYLNRIVDGCV-ARIAAKLEMM-EPCSSVKDRIGYSMIADAEEK--GL-I----------- 66 (224)
Q Consensus 5 ~~~~~~~~--~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~-~ptGS~K~R~a~~~l~~a~~~--g~-~----------- 66 (224)
+..+.+++ .....+|||+++++|++..| .+||+|+|++ |||||||+|++.+.+..+..+ +. .
T Consensus 29 ~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 108 (399)
T PRK08206 29 AKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSG 108 (399)
T ss_pred HHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhh
Confidence 45567888 56999999999999998888 6999999998 599999999999988877632 21 0
Q ss_pred -----CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHh
Q 027405 67 -----RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 67 -----~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
.++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..++.+||+|+.++. +++++.+.+++++++
T Consensus 109 ~~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~ 185 (399)
T PRK08206 109 EVREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQE 185 (399)
T ss_pred HHHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHH
Confidence 011 369999999999999999999999999999999999999999999999999995 789999999998887
Q ss_pred CCCeEEeC-----CCCC-CcchHhHHHhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcC--CCcEEEEEeC
Q 027405 142 TPNSYVLQ-----QFEN-PANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHN--PEIKLYGVEP 210 (224)
Q Consensus 142 ~~~~~~~~-----~~~~-~~~~~~g~~t~a~Ei~~q~~~---~~d~iv~pvG~Gg~~~Gi~~~~k~~~--~~~~vigve~ 210 (224)
. +++|++ ||+| +.+.++||.|+++||++|+++ .||+||+|+|+||+++|++.+|++.+ +.+|||+|||
T Consensus 186 ~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep 264 (399)
T PRK08206 186 N-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEP 264 (399)
T ss_pred c-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECC
Confidence 6 788886 6765 566689999999999999975 59999999999999999999999984 4799999999
Q ss_pred CCCcccc
Q 027405 211 VESAVLS 217 (224)
Q Consensus 211 ~~~~~~~ 217 (224)
++++++.
T Consensus 265 ~gs~~l~ 271 (399)
T PRK08206 265 DQADCLY 271 (399)
T ss_pred CCCchHH
Confidence 9998764
No 56
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.4e-45 Score=322.17 Aligned_cols=190 Identities=24% Similarity=0.285 Sum_probs=174.2
Q ss_pred hhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHH
Q 027405 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91 (224)
Q Consensus 12 ~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~ 91 (224)
++..++.|||+++. .+||+|+|++|||||||||++.+++.+|.++|. ++||++|+||||+|+|++|+.
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 67889999999873 489999999999999999999999999999886 689999999999999999999
Q ss_pred cCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHh
Q 027405 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 171 (224)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q 171 (224)
+|++|+||||++++..|+.+++.+||+|+.++. +++++.+.+++++++. +++|++++.||.+ ++|++|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHH
Confidence 999999999999999999999999999999986 5777888888888875 7788999999988 78999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccccC
Q 027405 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 172 ~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigve~~~~~~~~~ 218 (224)
++ .||+||+|+|+||+++|++.+||++. +.+|||+|||++++++..
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~ 253 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCK 253 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHh
Confidence 96 89999999999999999999999874 568999999999876653
No 57
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-46 Score=301.06 Aligned_cols=204 Identities=22% Similarity=0.359 Sum_probs=190.2
Q ss_pred chhchhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
.++..+++++.+.+..||.+.++.+-+..|.+||+|+|.+|.|||||.|+|.+.+..+.++.+ .+.+++.||||||
T Consensus 10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa 85 (323)
T KOG1251|consen 10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence 567789999999999999999999988889999999999999999999999999998875443 3679999999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+|+|++|+.+|++++||||.++|..|+..++.||++|+++++ ..+++.+.++++.++. +.+.++||++|.. +.|++
T Consensus 86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~--~~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqg 161 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEP--TVESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQG 161 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecC--ccchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccc
Confidence 999999999999999999999999999999999999999997 4577888899999887 8899999999998 89999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 215 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~ 215 (224)
|++.|+++|++ .+|++|+|+|+||+++|++.+.|...|+++|++|||++++.
T Consensus 162 TiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d 213 (323)
T KOG1251|consen 162 TIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADD 213 (323)
T ss_pred hHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccch
Confidence 99999999995 89999999999999999999999999999999999988654
No 58
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=6.9e-44 Score=313.63 Aligned_cols=208 Identities=23% Similarity=0.247 Sum_probs=178.8
Q ss_pred chhhHhhhcccCCCceeecccccCcCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHHc----------------CCCC
Q 027405 6 SVIAKDVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEP-CSSVKDRIGYSMIADAEEK----------------GLIR 67 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~p-tGS~K~R~a~~~l~~a~~~----------------g~~~ 67 (224)
...+.++..+ .+|||++++.|++.++ .+||+|+|++|+ |||||+|++.+.+..+.++ +.+.
T Consensus 11 ~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (376)
T TIGR01747 11 LAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIG 89 (376)
T ss_pred HHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHH
Confidence 3456777555 9999999999998888 599999999985 8999999999999887653 1111
Q ss_pred --CCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCe
Q 027405 68 --PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145 (224)
Q Consensus 68 --~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (224)
.+..+||++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.+||+|+.++. +|+++.+.+++++++. ++
T Consensus 90 ~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~ 166 (376)
T TIGR01747 90 EKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GW 166 (376)
T ss_pred hhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-Cc
Confidence 123689999999999999999999999999999999999999999999999999995 7899999999998876 68
Q ss_pred EEeC-----CCCC--CcchHhHHHhHHHHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcCC-C-cEEEEEeCCC
Q 027405 146 YVLQ-----QFEN--PANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNP-E-IKLYGVEPVE 212 (224)
Q Consensus 146 ~~~~-----~~~~--~~~~~~g~~t~a~Ei~~q~~~----~~d~iv~pvG~Gg~~~Gi~~~~k~~~~-~-~~vigve~~~ 212 (224)
++++ +|+| +. .++||.|+++||++|++. .||+||+|+|+||+++|++.++++..+ + +|||+|||++
T Consensus 167 ~~~~~~~~~~~~~~~~~-ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~g 245 (376)
T TIGR01747 167 VVVQDTAWEGYEKIPTW-IMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDK 245 (376)
T ss_pred EEeccccccccccCCch-HHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 8887 4655 33 378999999999999963 699999999999999999999987654 3 7999999999
Q ss_pred CccccC
Q 027405 213 SAVLSG 218 (224)
Q Consensus 213 ~~~~~~ 218 (224)
++++..
T Consensus 246 a~~~~~ 251 (376)
T TIGR01747 246 ADCLYQ 251 (376)
T ss_pred CCHHHH
Confidence 998753
No 59
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=5.4e-44 Score=310.27 Aligned_cols=200 Identities=23% Similarity=0.199 Sum_probs=175.8
Q ss_pred hHhhhcccCCCceeecccccCcCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGCVA-RIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 87 (224)
.+.+...+++|||+++++++...+. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|+
T Consensus 14 ~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~ 88 (328)
T TIGR00260 14 KDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAA 88 (328)
T ss_pred hhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHH
Confidence 3457788899999999998877776 99999999999999999999999999998875 68999999999999999
Q ss_pred HHHHcCCeEEEEEcCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCC-CCcchHhHHHhHH
Q 027405 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFE-NPANPKIHYETTG 165 (224)
Q Consensus 88 ~a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~a 165 (224)
+|+.+|++|+||||++ +++.|+++++.+||+|+.++. +++++.+.+++++++. +++++++++ ++.+ +.||.|++
T Consensus 89 ~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~ 164 (328)
T TIGR00260 89 YAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYA 164 (328)
T ss_pred HhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHH
Confidence 9999999999999998 899999999999999999995 7899999999998876 556555542 1766 67889999
Q ss_pred HHHHHhhCC-CCCEEEEccCchhHHHHHHHHHHhcCC-----CcEEEEEeCCCCcccc
Q 027405 166 PEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP-----EIKLYGVEPVESAVLS 217 (224)
Q Consensus 166 ~Ei~~q~~~-~~d~iv~pvG~Gg~~~Gi~~~~k~~~~-----~~~vigve~~~~~~~~ 217 (224)
+||++|+++ .+|+||+|+|+||+++|++.+|++... .+++++|||++++++.
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~ 222 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIV 222 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHH
Confidence 999999974 799999999999999999999997410 2399999999985553
No 60
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=3.3e-43 Score=311.21 Aligned_cols=207 Identities=23% Similarity=0.194 Sum_probs=174.8
Q ss_pred hhHhhhcccCCCceeecccccCcCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHH--cCCC--------------C--
Q 027405 8 IAKDVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEP-CSSVKDRIGYSMIADAEE--KGLI--------------R-- 67 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~p-tGS~K~R~a~~~l~~a~~--~g~~--------------~-- 67 (224)
.+.++ ..+.+|||++++.|++..| .+||+|+|++|+ |||||+|++.+.+..+.+ .|.. .
T Consensus 32 ~~~~~-~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~ 110 (396)
T TIGR03528 32 FHQSF-PGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREK 110 (396)
T ss_pred HHhcC-CCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhh
Confidence 44555 4569999999999998888 699999999985 999999999999987633 2210 0
Q ss_pred CCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEE
Q 027405 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV 147 (224)
Q Consensus 68 ~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (224)
....+||++|+||||+++|++|+.+|++|+||||++++..|+..++.+||+|+.++. +++++.+.+++++++. +++|
T Consensus 111 ~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~ 187 (396)
T TIGR03528 111 LGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVM 187 (396)
T ss_pred ccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEe
Confidence 012379999999999999999999999999999999999999999999999999985 7899999999998876 7888
Q ss_pred eC-----CCCCC-cchHhHHHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhc-CCC-cEEEEEeCCCCcc
Q 027405 148 LQ-----QFENP-ANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEH-NPE-IKLYGVEPVESAV 215 (224)
Q Consensus 148 ~~-----~~~~~-~~~~~g~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~~Gi~~~~k~~-~~~-~~vigve~~~~~~ 215 (224)
++ +|+|. ...++||.|+++||++|++ +.||+||+|+|+||+++|++.++++. .++ +|||+|||+++++
T Consensus 188 v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~ 267 (396)
T TIGR03528 188 VQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADC 267 (396)
T ss_pred eccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCch
Confidence 85 56652 2336899999999999996 26999999999999999999999554 444 5999999999988
Q ss_pred ccC
Q 027405 216 LSG 218 (224)
Q Consensus 216 ~~~ 218 (224)
|..
T Consensus 268 l~~ 270 (396)
T TIGR03528 268 LYR 270 (396)
T ss_pred HHH
Confidence 864
No 61
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.4e-42 Score=306.42 Aligned_cols=207 Identities=24% Similarity=0.233 Sum_probs=171.1
Q ss_pred HhhhcccC-CCceeecccccCcC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 027405 10 KDVTELIG-KTPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 10 ~~~~~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 87 (224)
..+..+++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+..++..|.+.|+ ...|+++|+||||+|+|+
T Consensus 53 ~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~ 128 (402)
T PRK13028 53 YLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATAT 128 (402)
T ss_pred HHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 34556776 79999999999887 5899999999999999999999999999999886 245667999999999999
Q ss_pred HHHHcCCeEEEEEcCCCCH---HHHHHHHhCCCEEEEeCC-CCChHHHHHHHH-HHHHhCCCeEEeC-CCC----CCcch
Q 027405 88 MAAAKGYRLIITMPASMSL---ERRMVLLAFGAELVLTDP-ARGMKGAVQKAE-EIRDKTPNSYVLQ-QFE----NPANP 157 (224)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~---~~~~~~~~~Ga~V~~~~~-~~~~~~~~~~a~-~~~~~~~~~~~~~-~~~----~~~~~ 157 (224)
+|+.+|++|+||||+.... .++.+|+.+||+|+.++. ..+++++.+.+. +++++.++.+|+. +.. .|.++
T Consensus 129 aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v 208 (402)
T PRK13028 129 AAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMV 208 (402)
T ss_pred HHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHH
Confidence 9999999999999986433 568899999999999984 347888888874 4565533555552 221 13344
Q ss_pred HhHHHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC--------CccccCCCC
Q 027405 158 KIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE--------SAVLSGGKP 221 (224)
Q Consensus 158 ~~g~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~--------~~~~~~~~~ 221 (224)
..++.+++.|+.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.+ ++++..|.+
T Consensus 209 ~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~ 283 (402)
T PRK13028 209 RDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKP 283 (402)
T ss_pred HHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCc
Confidence 6799999999999973 3599999999999999999999987 4899999999999 777877654
No 62
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=3.6e-42 Score=306.00 Aligned_cols=203 Identities=22% Similarity=0.256 Sum_probs=168.0
Q ss_pred hhHhhhcccCCCceeecccccCcCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEE-eeCCChHHHH
Q 027405 8 IAKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI-EPTSGNTGIG 84 (224)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv-~~ssGN~~~a 84 (224)
+.+.+....++|||+++++|++.++ .+||+|+|++|||||||+|++..++.++.++|. ..++ ++|+||||+|
T Consensus 58 v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~a 132 (419)
T TIGR01415 58 VLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSA 132 (419)
T ss_pred HHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 4444444446899999999987766 699999999999999999999999999999986 3455 4689999999
Q ss_pred HHHHHHHcCCeEEEEEcCCC---CHHHHHHHHhCCCEEEEeCCCCChHH------------------HHHHHHHHHHhCC
Q 027405 85 LAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARGMKG------------------AVQKAEEIRDKTP 143 (224)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~~~~~~~------------------~~~~a~~~~~~~~ 143 (224)
+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++.+ +++ ++..+.+++++.+
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~ 210 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDE 210 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCC
Confidence 99999999999999999854 568899999999999999863 332 3556666665543
Q ss_pred -CeEEeCCCCCCcchHhHHHhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhc----CCCcEEEEEeCCCCcc
Q 027405 144 -NSYVLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEH----NPEIKLYGVEPVESAV 215 (224)
Q Consensus 144 -~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~---~~d~iv~pvG~Gg~~~Gi~~~~k~~----~~~~~vigve~~~~~~ 215 (224)
.+|+++++.|+ ...|+.++|+||++|++. .||+||+|+|+||+++|++.+|++. .+++|||+|||+++++
T Consensus 211 ~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~ 288 (419)
T TIGR01415 211 DTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPT 288 (419)
T ss_pred CCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChh
Confidence 45777776663 478999999999999964 4999999999999999999988432 3589999999999999
Q ss_pred ccCC
Q 027405 216 LSGG 219 (224)
Q Consensus 216 ~~~~ 219 (224)
++.|
T Consensus 289 l~~g 292 (419)
T TIGR01415 289 LTRG 292 (419)
T ss_pred hhcC
Confidence 8876
No 63
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=3e-42 Score=303.90 Aligned_cols=199 Identities=23% Similarity=0.250 Sum_probs=163.7
Q ss_pred HhhhcccC-CCceeecccccCcC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 027405 10 KDVTELIG-KTPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 10 ~~~~~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 87 (224)
..+.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..|.+.|+ ...|+++|+||||+|+|+
T Consensus 49 ~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~ 124 (397)
T PRK04346 49 YLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATAT 124 (397)
T ss_pred HHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 34556677 59999999999887 5899999999999999999999999999999886 245666899999999999
Q ss_pred HHHHcCCeEEEEEcCCC-C--HHHHHHHHhCCCEEEEeCC-CCChHHHHHHHH-HHHHhCCCeEEe-CCCCC----Ccch
Q 027405 88 MAAAKGYRLIITMPASM-S--LERRMVLLAFGAELVLTDP-ARGMKGAVQKAE-EIRDKTPNSYVL-QQFEN----PANP 157 (224)
Q Consensus 88 ~a~~~g~~~~ivvp~~~-~--~~~~~~~~~~Ga~V~~~~~-~~~~~~~~~~a~-~~~~~~~~~~~~-~~~~~----~~~~ 157 (224)
+|+++|++|+||||+.. + ..++.+|+.+||+|+.++. ..+++++.+.+. ++.++.++.+|+ .+..+ |.++
T Consensus 125 ~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v 204 (397)
T PRK04346 125 AAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMV 204 (397)
T ss_pred HHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHH
Confidence 99999999999999853 3 3577889999999999984 346777766554 456553344444 33322 2344
Q ss_pred HhHHHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027405 158 KIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 213 (224)
Q Consensus 158 ~~g~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~ 213 (224)
..||.+++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.++
T Consensus 205 ~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~ 263 (397)
T PRK04346 205 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGK 263 (397)
T ss_pred HHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCC
Confidence 5799999999999984 3599999999999999999999976 88999999999985
No 64
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=6.4e-42 Score=302.45 Aligned_cols=201 Identities=21% Similarity=0.280 Sum_probs=164.1
Q ss_pred hhHhhhcccC-CCceeecccccCcC------CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCCh
Q 027405 8 IAKDVTELIG-KTPLVYLNRIVDGC------VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGN 80 (224)
Q Consensus 8 ~~~~~~~~~~-~TPl~~~~~l~~~~------~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 80 (224)
....+..+++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..|.+.|+ ...|+++|+||
T Consensus 55 ~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGN 130 (410)
T PLN02618 55 LAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQ 130 (410)
T ss_pred HHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHH
Confidence 3456778885 89999999998765 4799999999999999999999999998888775 24455667999
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCC---CHHHHHHHHhCCCEEEEeCC-CCChHHHHH-HHHHHHHhCCCeEEe-CCCC--
Q 027405 81 TGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQ-KAEEIRDKTPNSYVL-QQFE-- 152 (224)
Q Consensus 81 ~~~alA~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~-~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~-- 152 (224)
||+|+|++|+.+|++|+||||+.. +..|+.+|+.+||+|+.++. ..+++++.+ .+++++++.++.+|+ .+..
T Consensus 131 hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp 210 (410)
T PLN02618 131 HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 210 (410)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCC
Confidence 999999999999999999999863 35677899999999999954 357888874 446677653344555 3322
Q ss_pred C--CcchHhHHHhHHHHHHHhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027405 153 N--PANPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 213 (224)
Q Consensus 153 ~--~~~~~~g~~t~a~Ei~~q~----~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~ 213 (224)
+ +.+.+.++.++|.||.+|+ +..||+||+|+|+||+++|++.+|+. .|++|||||||.++
T Consensus 211 ~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 211 HPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCC
Confidence 1 2234689999999998876 34699999999999999999999975 78999999999996
No 65
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=4.2e-42 Score=296.41 Aligned_cols=193 Identities=23% Similarity=0.198 Sum_probs=162.9
Q ss_pred cccCCCceeecccccCcCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCcEEEee--CCChHHHHHHHHH
Q 027405 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMA 89 (224)
Q Consensus 14 ~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~~~alA~~a 89 (224)
....+|||+++++|+...+.+||+|+|++||| ||||+|++.+++.+++++|. +.||++ |+||||+|+|++|
T Consensus 3 ~~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a 77 (311)
T TIGR01275 3 LIPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAA 77 (311)
T ss_pred CCCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHH
Confidence 34578999999999887788999999999998 99999999999999999886 678887 6699999999999
Q ss_pred HHcCCeEEEEEcCCC-CHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHH----hCC-CeEEeCCCCCCcchHhHHHh
Q 027405 90 AAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD----KTP-NSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 90 ~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t 163 (224)
+.+|+++++|||+.. +..+..+++.+||+|+.++. .++++..+.++++++ +.+ .+++++++.|+.+ ..|+.+
T Consensus 78 ~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~ 155 (311)
T TIGR01275 78 KKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSA-EEYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVE 155 (311)
T ss_pred HHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECc-hhhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHH
Confidence 999999999999965 45567778999999999985 245555455444443 222 3456688888887 556667
Q ss_pred HHHHHHHhhCC--CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027405 164 TGPEIWKGTGG--KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 213 (224)
Q Consensus 164 ~a~Ei~~q~~~--~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~ 213 (224)
+++||++|++. +||+||+|+|||||++|++.+||+.+|+++||||||+.+
T Consensus 156 ~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~ 207 (311)
T TIGR01275 156 AVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRF 207 (311)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 99999999963 699999999999999999999999999999999998765
No 66
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=7.5e-42 Score=302.17 Aligned_cols=200 Identities=19% Similarity=0.218 Sum_probs=163.4
Q ss_pred hHhhhcccC-CCceeecccccCcCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHH
Q 027405 9 AKDVTELIG-KTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLA 86 (224)
Q Consensus 9 ~~~~~~~~~-~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA 86 (224)
++.+..+++ +|||+++++|++..+ .+||+|+|++|||||||+|.+..++..+.++|. ...++++|+||||+|+|
T Consensus 40 ~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA 115 (385)
T TIGR00263 40 NELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATA 115 (385)
T ss_pred HHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHH
Confidence 344445564 899999999988776 799999999999999999999999999988874 24566799999999999
Q ss_pred HHHHHcCCeEEEEEcCC-CCH--HHHHHHHhCCCEEEEeCCC-CChHHHH-HHHHHHHHhCCCeEEe-CCCCC----Ccc
Q 027405 87 FMAAAKGYRLIITMPAS-MSL--ERRMVLLAFGAELVLTDPA-RGMKGAV-QKAEEIRDKTPNSYVL-QQFEN----PAN 156 (224)
Q Consensus 87 ~~a~~~g~~~~ivvp~~-~~~--~~~~~~~~~Ga~V~~~~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~ 156 (224)
++|+.+|++|+||||+. .+. .++++++.+||+|+.++.. +.++++. +.+++++++.++.+|+ +++.| +.+
T Consensus 116 ~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~ 195 (385)
T TIGR00263 116 TAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTM 195 (385)
T ss_pred HHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHH
Confidence 99999999999999985 443 5788999999999999853 4577764 4455556654355555 44433 245
Q ss_pred hHhHHHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027405 157 PKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 213 (224)
Q Consensus 157 ~~~g~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~ 213 (224)
+..|++|++.||++|+. ..||+||+|+|+||+++|++.++.+ .|++|||||||+++
T Consensus 196 ~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs 255 (385)
T TIGR00263 196 VRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGL 255 (385)
T ss_pred HHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCC
Confidence 56899999999999973 2589999999999999999998865 69999999999985
No 67
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.5e-41 Score=315.07 Aligned_cols=200 Identities=21% Similarity=0.245 Sum_probs=170.9
Q ss_pred HhhhcccC-CCceeecccccCc----CC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHH
Q 027405 10 KDVTELIG-KTPLVYLNRIVDG----CV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (224)
Q Consensus 10 ~~~~~~~~-~TPl~~~~~l~~~----~~--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~ 82 (224)
..+..++| +|||+++++|++. .| .+||+|+|++|||||||+|++.+++..+.++|+ .++|+++|+||||
T Consensus 317 ~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG 392 (695)
T PRK13802 317 TLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHG 392 (695)
T ss_pred HHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHH
Confidence 34567888 9999999998743 33 799999999999999999999999999999987 3678899999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCC---CHHHHHHHHhCCCEEEEeCC-CCChHHHHHHH-HHHHHhCC-CeEEeCCCCCC--
Q 027405 83 IGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQKA-EEIRDKTP-NSYVLQQFENP-- 154 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~-~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~-- 154 (224)
+|+|++|+.+|++|+||||+.. +..|+.+|+.+||+|+.++. ..+++++.+.+ +++.++.+ .+|+++++.|+
T Consensus 393 ~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P 472 (695)
T PRK13802 393 VATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHP 472 (695)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCC
Confidence 9999999999999999999853 67899999999999999984 23677876555 65666533 45788888654
Q ss_pred --cchHhHHHhHHHHHHHhhCC-----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc
Q 027405 155 --ANPKIHYETTGPEIWKGTGG-----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 214 (224)
Q Consensus 155 --~~~~~g~~t~a~Ei~~q~~~-----~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~ 214 (224)
.++.+|+.++|.||++|+.. .||+||+|+|+||+++|++.+|++ .|++|||||||.++.
T Consensus 473 ~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g 538 (695)
T PRK13802 473 FPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNG 538 (695)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCC
Confidence 34568999999999999952 699999999999999999999976 689999999999964
No 68
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.5e-41 Score=298.71 Aligned_cols=206 Identities=22% Similarity=0.215 Sum_probs=165.5
Q ss_pred hhHhhhcccC-CCceeecccccCcC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHH
Q 027405 8 IAKDVTELIG-KTPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (224)
Q Consensus 8 ~~~~~~~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~al 85 (224)
++....++++ +|||+++++++... +.+||+|+|++|||||||+|.+..++..+.++|. ...++++|+||||+|+
T Consensus 23 ~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssGN~g~al 98 (365)
T cd06446 23 LRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAGQHGVAT 98 (365)
T ss_pred HHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHH
Confidence 4445555554 89999999998776 5799999999999999999999999999998886 2334447999999999
Q ss_pred HHHHHHcCCeEEEEEcCCCC---HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHH-HHhC-CCeEEeCCCC----CCc
Q 027405 86 AFMAAAKGYRLIITMPASMS---LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEI-RDKT-PNSYVLQQFE----NPA 155 (224)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~---~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~~----~~~ 155 (224)
|++|+.+|++|+||||+..+ ..++.+++.+||+|+.++.. ..++++...+.+. +++. +.+|+++++. ++.
T Consensus 99 A~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~ 178 (365)
T cd06446 99 ATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPN 178 (365)
T ss_pred HHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchH
Confidence 99999999999999998643 36788899999999999853 2456666544433 4332 2355444431 234
Q ss_pred chHhHHHhHHHHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC
Q 027405 156 NPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 156 ~~~~g~~t~a~Ei~~q~~~----~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~ 218 (224)
++++|+.|+++||++|+++ .||+||+|+|+||+++|++.++++ .+++|||||||++++.+.+
T Consensus 179 ~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~ 244 (365)
T cd06446 179 MVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETG 244 (365)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccc
Confidence 5689999999999999963 699999999999999999998887 4689999999999988764
No 69
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=7.8e-42 Score=297.08 Aligned_cols=202 Identities=24% Similarity=0.244 Sum_probs=171.1
Q ss_pred hHhhhcccCCCceeecccccCcCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCcEEEeeC--CChHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVLIEPT--SGNTGIG 84 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s--sGN~~~a 84 (224)
++++...+++|||++++.|++..+.+||+|+|++||+ ||||+|++.+++.++.++|. ++||+++ +||||+|
T Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~a 80 (331)
T PRK03910 6 FPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQ 80 (331)
T ss_pred CCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHH
Confidence 4567889999999999999877788999999999997 59999999999999998875 5678764 5899999
Q ss_pred HHHHHHHcCCeEEEEEcCCCCH--------HHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCeE-EeCCCCCC
Q 027405 85 LAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTDPARGMKG-AVQKAEEIRDKTPNSY-VLQQFENP 154 (224)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~--------~~~~~~~~~Ga~V~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~ 154 (224)
+|++|+.+|++|++|||+..+. .++..++.+||+|+.++..++..+ +...++++.++.+..| +.+++.|+
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 9999999999999999998764 456889999999999986433323 4456666766543333 45677888
Q ss_pred cchHhHHHhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027405 155 ANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216 (224)
Q Consensus 155 ~~~~~g~~t~a~Ei~~q~~~---~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~ 216 (224)
.+ ..|+.+++.||++|+++ .||+||+|+|||||++|++.+||+.+|+++||||||++++.+
T Consensus 161 ~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~ 224 (331)
T PRK03910 161 LG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAE 224 (331)
T ss_pred hh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence 87 56888999999999963 699999999999999999999999999999999999987654
No 70
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=2.8e-41 Score=300.68 Aligned_cols=201 Identities=22% Similarity=0.249 Sum_probs=164.9
Q ss_pred hcccCCCceeecccccCcCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEe-eCCChHHHHHHHHH
Q 027405 13 TELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMA 89 (224)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~ssGN~~~alA~~a 89 (224)
...+++|||+++++|++.++ .+||+|+|++|||||||+|++..++..+.++|. ..+++ .|+||||.|+|++|
T Consensus 72 ~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 72 YRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALAC 146 (427)
T ss_pred HcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHH
Confidence 46678999999999987765 699999999999999999999999999999986 35564 67899999999999
Q ss_pred HHcCCeEEEEEcCC---CCHHHHHHHHhCCCEEEEeCCCCC----------------hHHHHHHHHHHHHhCCCeEEeCC
Q 027405 90 AAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPARG----------------MKGAVQKAEEIRDKTPNSYVLQQ 150 (224)
Q Consensus 90 ~~~g~~~~ivvp~~---~~~~~~~~~~~~Ga~V~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
+.+|++|+||||+. .++.|+.+|+.+||+|+.++...+ ...++..+.+++++.++.+|...
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 99999999999974 356889999999999999985211 11256666777665445444433
Q ss_pred CCCCcchHhHHHhHHHHHHHhhC---CCCCEEEEccCchhHHHHHHHHHHh---cC-CCcEEEEEeCCCCccccCC
Q 027405 151 FENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKE---HN-PEIKLYGVEPVESAVLSGG 219 (224)
Q Consensus 151 ~~~~~~~~~g~~t~a~Ei~~q~~---~~~d~iv~pvG~Gg~~~Gi~~~~k~---~~-~~~~vigve~~~~~~~~~~ 219 (224)
.. ..+.+.||.++|+||.+|++ ..||+||+|+|+||+++|++.+|.+ .+ +++|||+|||++|++++.|
T Consensus 227 s~-~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g 301 (427)
T PRK12391 227 SV-LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKG 301 (427)
T ss_pred CC-CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccc
Confidence 32 22457899999999999996 3699999999999999999997732 34 8899999999999998765
No 71
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=2e-41 Score=290.70 Aligned_cols=194 Identities=37% Similarity=0.519 Sum_probs=165.0
Q ss_pred hhcccCCCceeecc--cccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 027405 12 VTELIGKTPLVYLN--RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 12 ~~~~~~~TPl~~~~--~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 89 (224)
|+..+++|||++++ .++...+.+||+|+|++|||||||+|++.+++.++++++. ++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 56889999999975 4455567899999999999999999999999999998865 6789999999999999999
Q ss_pred HHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHH-------hCCCeEEeCCCCCCcchHhHHH
Q 027405 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD-------KTPNSYVLQQFENPANPKIHYE 162 (224)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~g~~ 162 (224)
+.+|++|++|+|++++..++++++.+|++|+.++. +++++.+.++++++ ..++. ++|+ ++.+...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--DVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--THHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEccc--cccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 99999999999999999999999999999999985 44444443333333 22222 7777 5566689999
Q ss_pred hHHHHHHHhhCCCCCE--EEEccCchhHHHHHHHHHHh--cCCCcEEEEEeCCCCcccc
Q 027405 163 TTGPEIWKGTGGKIDA--LVSGIGTGGTVTGAGKYLKE--HNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~--iv~pvG~Gg~~~Gi~~~~k~--~~~~~~vigve~~~~~~~~ 217 (224)
+++.||++|++ .||. ||+|+|+||+++|++.+++. . |++|+|+|||.+++++.
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~ 207 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLY 207 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHH
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCcccc
Confidence 99999999996 6665 99999999999999999999 7 89999999999987764
No 72
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-42 Score=280.92 Aligned_cols=204 Identities=42% Similarity=0.640 Sum_probs=182.1
Q ss_pred HhhhcccCCCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHH
Q 027405 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (224)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 89 (224)
+-+...+++|||+++..|++..||+|+.|+|++||.||.|||.|.++++.|++.|++.+| ..|++.|+||+|+++|..|
T Consensus 41 ~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v~ 119 (391)
T KOG1481|consen 41 SGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHVA 119 (391)
T ss_pred chhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHhh
Confidence 356788999999999999999999999999999999999999999999999999999998 6799999999999999999
Q ss_pred HHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC-----Ch-HHHHHHHHHHHHhCC--CeEEeCCCCCCcchHhHH
Q 027405 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-----GM-KGAVQKAEEIRDKTP--NSYVLQQFENPANPKIHY 161 (224)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~-----~~-~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~ 161 (224)
+.+|++|+|+||.+.+.+|.+.++.+||+|..|++.. .| ..+.+.+.+...+.+ ..+|.+||+|+.||.+||
T Consensus 120 ~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHy 199 (391)
T KOG1481|consen 120 RALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHY 199 (391)
T ss_pred hhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHh
Confidence 9999999999999999999999999999999988631 12 233334444433321 236789999999999999
Q ss_pred HhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCC-cEEEEEeCCCCc
Q 027405 162 ETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-IKLYGVEPVESA 214 (224)
Q Consensus 162 ~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~-~~vigve~~~~~ 214 (224)
.++|+||+.|..+++|++++.+|+|||++|+++++|+..+. ++++.++|-+|-
T Consensus 200 etTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSG 253 (391)
T KOG1481|consen 200 ETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSG 253 (391)
T ss_pred cCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999999998877 999999999983
No 73
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5.7e-41 Score=292.31 Aligned_cols=206 Identities=17% Similarity=0.156 Sum_probs=170.0
Q ss_pred hhhHhhhcccCCCceeecccccCcCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCcEEEee--CCC
Q 027405 7 VIAKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPC---SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSG 79 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssG 79 (224)
..++++.+.+++|||+++++++...+ .+||+|+|++||+ ||+|+|.+.+++.++.++|. .+|+++ |+|
T Consensus 4 ~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~G 78 (337)
T PRK12390 4 QKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQS 78 (337)
T ss_pred CCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCcc
Confidence 34567888999999999999887766 6999999999997 78899999999999999886 677876 889
Q ss_pred hHHHHHHHHHHHcCCeEEEEEcCCCC--------HHHHHHHHhCCCEEEEeCCCC--ChHHHHHHHHHHHHhCCC-eEEe
Q 027405 80 NTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTPN-SYVL 148 (224)
Q Consensus 80 N~~~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~V~~~~~~~--~~~~~~~~a~~~~~~~~~-~~~~ 148 (224)
|||+|+|++|+.+|++|++|++..++ ..|+.+++.+||+|+.++... .+.++++.+.+..++..+ +|.+
T Consensus 79 N~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (337)
T PRK12390 79 NHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAI 158 (337)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEe
Confidence 99999999999999999999876544 236778999999999998631 234666677666666334 4546
Q ss_pred CCCCCC-cchHhHHHhHHHHHHHh---hCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc
Q 027405 149 QQFENP-ANPKIHYETTGPEIWKG---TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217 (224)
Q Consensus 149 ~~~~~~-~~~~~g~~t~a~Ei~~q---~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 217 (224)
+.+.+. .....|+.++++||++| +++++|+||+|+|||||++|++.+||+..|++|||||||++++.+.
T Consensus 159 ~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~ 231 (337)
T PRK12390 159 PAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQT 231 (337)
T ss_pred CCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHH
Confidence 655432 22356888999999998 4447999999999999999999999999999999999999987664
No 74
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=4.5e-41 Score=289.56 Aligned_cols=192 Identities=22% Similarity=0.257 Sum_probs=160.3
Q ss_pred CceeecccccCcC--CceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCcEEEee--CCChHHHHHHHHHHH
Q 027405 19 TPLVYLNRIVDGC--VARIAAKLEMMEPC---SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAA 91 (224)
Q Consensus 19 TPl~~~~~l~~~~--~~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~~~alA~~a~~ 91 (224)
|||+++++|+... +.+||+|+|++||+ ||+|+|++.+++.++.++|. ++||++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998766 57999999999999 56799999999999999886 678887 689999999999999
Q ss_pred cCCeEEEEEcCCCC--------HHHHHHHHhCCCEEEEeCCCC--ChHHHHHHH-HHHHHhCCCeEE-eCCCC-CCcchH
Q 027405 92 KGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPAR--GMKGAVQKA-EEIRDKTPNSYV-LQQFE-NPANPK 158 (224)
Q Consensus 92 ~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~V~~~~~~~--~~~~~~~~a-~~~~~~~~~~~~-~~~~~-~~~~~~ 158 (224)
+|++|++|||++.+ ..|+++++.+||+|+.++.+. ...++.+.+ +++.++.+..|+ .+++. |+.+ +
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence 99999999999876 468899999999999998632 112233333 334333323454 45553 8888 7
Q ss_pred hHHHhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027405 159 IHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216 (224)
Q Consensus 159 ~g~~t~a~Ei~~q~~~---~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~ 216 (224)
.||.+++.||++|++. .||+||+|+|||||++|++.+||+.+|++|||+|||++++.+
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~ 215 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEK 215 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHH
Confidence 8999999999999964 699999999999999999999999999999999999998765
No 75
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=4e-41 Score=292.29 Aligned_cols=201 Identities=21% Similarity=0.224 Sum_probs=166.9
Q ss_pred chhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCcEEE--eeCCChH
Q 027405 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVLI--EPTSGNT 81 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv--~~ssGN~ 81 (224)
+..++++.+.+++|||++++++++..+.+||+|+|++||+ ||||+|++.+++.++.++|. ++|+ ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence 3456789999999999999999877778999999999996 89999999999999999886 4566 6899999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCHH-HHHHHHhCCCEEEEeCCCCC---hHHHHHHHHHHHHhCCCeEE-eCCCCCCcc
Q 027405 82 GIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTDPARG---MKGAVQKAEEIRDKTPNSYV-LQQFENPAN 156 (224)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~-~~~~~~~~Ga~V~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 156 (224)
++|+|++|+.+|+++++|||.+.+.. +...++.+||+|+.++...+ ++.+.+.+++++++.+..|+ .+++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999875433 65677899999998874322 23556667777666545565 466678877
Q ss_pred hHhHHHhHHHHHHHhhC---CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027405 157 PKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212 (224)
Q Consensus 157 ~~~g~~t~a~Ei~~q~~---~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~ 212 (224)
+..++..+ .||++|++ .++|+||+|+|||||++|++.++|..+|++|||||+|.+
T Consensus 164 ~~g~~~~~-~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 164 TLGYVRAV-GEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HHHHHHHH-HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 44444444 49999996 379999999999999999999999999999999999976
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=8.6e-41 Score=291.14 Aligned_cols=204 Identities=18% Similarity=0.170 Sum_probs=169.6
Q ss_pred hhhHhhhcccCCCceeecccccCcCCc--eEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCcEEEee--CCC
Q 027405 7 VIAKDVTELIGKTPLVYLNRIVDGCVA--RIAAKLEMMEPC---SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSG 79 (224)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~~~--~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssG 79 (224)
..++++...+++|||++++++++..+. +||+|+|++||+ ||+|+|++.+++.+++++|. ++|++. |+|
T Consensus 3 ~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~g 77 (337)
T TIGR01274 3 SRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQS 77 (337)
T ss_pred CcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcc
Confidence 345778899999999999999887763 999999999986 77899999999999999986 677876 779
Q ss_pred hHHHHHHHHHHHcCCeEEEEEcCCCC--------HHHHHHHHhCCCEEEEeCCCC--ChHHHHHHHHHHHHhC-CCeEEe
Q 027405 80 NTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKT-PNSYVL 148 (224)
Q Consensus 80 N~~~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~V~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~ 148 (224)
|||+|+|++|+.+|++|+||||+..+ ..|+.+++.+||+|+.++... +..+++..+.+.+++. +..|++
T Consensus 78 N~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i 157 (337)
T TIGR01274 78 NQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPI 157 (337)
T ss_pred hHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999998542 578999999999999998521 1235555555555554 344666
Q ss_pred CCCCC--CcchHhHHHhHHHHHHHhh---CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 027405 149 QQFEN--PANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216 (224)
Q Consensus 149 ~~~~~--~~~~~~g~~t~a~Ei~~q~---~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~ 216 (224)
+.+.+ +.. ..|+.++++||.+|+ +.+||+||+|+|+|||++|++.++++.+|++|||||||++++.+
T Consensus 158 ~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~ 229 (337)
T TIGR01274 158 PAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQ 229 (337)
T ss_pred CCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence 66533 433 568889999999995 34799999999999999999999999999999999999998765
No 77
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=3.7e-41 Score=298.11 Aligned_cols=196 Identities=16% Similarity=0.075 Sum_probs=167.8
Q ss_pred hcccCCCceeecccccCcCCc-eEEEEe-------CCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHH
Q 027405 13 TELIGKTPLVYLNRIVDGCVA-RIAAKL-------EMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (224)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~~~-~l~~K~-------E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~a 84 (224)
....+.|||+++++|++..|. +||+|+ |++|||||||||++.+++..+.++|. +.||++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 345667999999999988886 999954 55899999999999999999999874 78999999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhH
Q 027405 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (224)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (224)
+|++|+.+|++|+||||++++..+...++.+|++|+.+++ +|+++.+.+++++++. +++..++++|+.. ++|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHH
Confidence 9999999999999999998654333334789999999985 7999999999998876 6655566678876 8999999
Q ss_pred HHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC-------CCcEEEEEeCCCCcccc
Q 027405 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-------PEIKLYGVEPVESAVLS 217 (224)
Q Consensus 165 a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~-------~~~~vigve~~~~~~~~ 217 (224)
++||++|++..||+||+|+|+|+++.|++.+++++. .-+|+++|||+++++|.
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~ 267 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMV 267 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHH
Confidence 999999997449999999999998999999988742 23788999999998765
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.5e-39 Score=301.40 Aligned_cols=199 Identities=23% Similarity=0.239 Sum_probs=163.3
Q ss_pred HhhhcccC-CCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHH
Q 027405 10 KDVTELIG-KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (224)
Q Consensus 10 ~~~~~~~~-~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 88 (224)
..+..+++ +|||+++++|++..+.+||+|+|++|||||||+|.+...+..|.+.|+ ...++++|+||||+|+|++
T Consensus 262 ~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~ 337 (610)
T PRK13803 262 RLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATA 337 (610)
T ss_pred HHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHH
Confidence 34456665 899999999998778899999999999999999999999999988875 2456679999999999999
Q ss_pred HHHcCCeEEEEEcCCC---CHHHHHHHHhCCCEEEEeCCC-CChHHHHHHH-HHHHHhCCCeEEeCCCC---C--CcchH
Q 027405 89 AAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPA-RGMKGAVQKA-EEIRDKTPNSYVLQQFE---N--PANPK 158 (224)
Q Consensus 89 a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~ 158 (224)
|+.+|++|+||||+.. +..++.+|+.+||+|+.++.. .++.++.+.+ +++..+.++.+|+.++. + +.++.
T Consensus 338 aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~ 417 (610)
T PRK13803 338 CALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVA 417 (610)
T ss_pred HHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHH
Confidence 9999999999999864 356788999999999999842 3566775544 44534444566664432 2 33434
Q ss_pred hHHHhHHHHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 027405 159 IHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 213 (224)
Q Consensus 159 ~g~~t~a~Ei~~q~~~----~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~ 213 (224)
.|+.|++.||.+|+.. .||+||+|+|+||+++|++.+|++ .|++|||||||.++
T Consensus 418 ~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~ 475 (610)
T PRK13803 418 YFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGK 475 (610)
T ss_pred HHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCC
Confidence 6899999999999842 599999999999999999999965 78999999999985
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=252.93 Aligned_cols=199 Identities=24% Similarity=0.230 Sum_probs=178.2
Q ss_pred hhhcccCCCceeecccccCcCC---ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHH
Q 027405 11 DVTELIGKTPLVYLNRIVDGCV---ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (224)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~~---~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 87 (224)
......+.||+++.+++...++ .++|+|.|++|||||||||++..++..+.+.|. .+|+++||||+|.|+|.
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 4567788999999988876655 359999999999999999999999999999874 47999999999999999
Q ss_pred HHHHcCCeEEEEEcCC-CCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHH
Q 027405 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 88 ~a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~ 166 (224)
++.+.|++|+|++|.+ ++..|+.++..+|++++.+++ +||+|++.+++++++. ++++....-||.. +.|+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHh
Confidence 9999999999999998 999999999999999999996 8999999999999866 6677766677776 789999999
Q ss_pred HHHHhhC-CCCCEEEEccCchhHHHHHHHHHHhcCCC------cEEEEEeCCCCccccC
Q 027405 167 EIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPE------IKLYGVEPVESAVLSG 218 (224)
Q Consensus 167 Ei~~q~~-~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~------~~vigve~~~~~~~~~ 218 (224)
|+++|++ ..||+|++|+|+||++.|++.++++..|. +++.+||++++.++..
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~ 278 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVY 278 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhh
Confidence 9999997 47999999999999999999999998764 8889999998766543
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=3.3e-31 Score=221.42 Aligned_cols=207 Identities=23% Similarity=0.293 Sum_probs=170.1
Q ss_pred hhcccC-CCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHH
Q 027405 12 VTELIG-KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (224)
Q Consensus 12 ~~~~~~-~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~ 90 (224)
+..+.+ +|||+..++|++..+.+||+|+|++|+||+||...+...+..|++.|+ .+.|.+...|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 444555 599999999999999999999999999999999999999999999998 467778888999999999999
Q ss_pred HcCCeEEEEEcCC-C--CHHHHHHHHhCCCEEEEeCC-CCChHHHHHHH-HHHHHhCCCeEEeCCCC---C--CcchHhH
Q 027405 91 AKGYRLIITMPAS-M--SLERRMVLLAFGAELVLTDP-ARGMKGAVQKA-EEIRDKTPNSYVLQQFE---N--PANPKIH 160 (224)
Q Consensus 91 ~~g~~~~ivvp~~-~--~~~~~~~~~~~Ga~V~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~~g 160 (224)
++|++|+|||... + +..++.+|+.+||+|+.|.. +.+..|+.++| +++...-++.+|+-... + |...+.-
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 9999999999874 3 34578899999999999874 45678888877 66666655666663211 1 3345668
Q ss_pred HHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC--------CccccCCCCCC
Q 027405 161 YETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE--------SAVLSGGKPGG 223 (224)
Q Consensus 161 ~~t~a~Ei~~q~~----~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~--------~~~~~~~~~~~ 223 (224)
+..++.|..+|+- .-||+||.|+|+|++..|++..|.. .++|++||||+.+ ++++..|.+|.
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~Gv 278 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGV 278 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCcee
Confidence 8999999998862 3499999999999999999998876 4779999999987 55666666553
No 81
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-27 Score=199.25 Aligned_cols=204 Identities=22% Similarity=0.239 Sum_probs=167.9
Q ss_pred chhhHhhhcccCCCceeecccccCcCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHcCCCCCCCcEEEee--CCChH
Q 027405 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEP--CSSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNT 81 (224)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~ 81 (224)
...++|+....++|||..++++++..+.+||+||||+.+ .|.+|.|+..+++.+|+++|. +++|+. ..+||
T Consensus 3 l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh 77 (323)
T COG2515 3 LSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNH 77 (323)
T ss_pred cccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhH
Confidence 345788889999999999999999999999999999966 689999999999999999886 778885 45999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCC----CHHHHHHHHhCCCEEEEeCCCCCh--H-HHHHHHHHHHHhCCCeEEeCCCC-C
Q 027405 82 GIGLAFMAAAKGYRLIITMPASM----SLERRMVLLAFGAELVLTDPARGM--K-GAVQKAEEIRDKTPNSYVLQQFE-N 153 (224)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~----~~~~~~~~~~~Ga~V~~~~~~~~~--~-~~~~~a~~~~~~~~~~~~~~~~~-~ 153 (224)
.+++|++|+++|++|+++..... -..++...+.+|+++..++...++ . .....++++.++....|.++... |
T Consensus 78 ~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~ 157 (323)
T COG2515 78 VRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSS 157 (323)
T ss_pred HHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcC
Confidence 99999999999999999998764 123556667899999999975554 2 23344455555544455555555 4
Q ss_pred CcchHhHHHhHHHHHHHhhC--CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 027405 154 PANPKIHYETTGPEIWKGTG--GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 215 (224)
Q Consensus 154 ~~~~~~g~~t~a~Ei~~q~~--~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~ 215 (224)
|. ...||...+.||.+|.. -.+|.||+++|||||.||++.++...+++++|||+.....+.
T Consensus 158 ~~-g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~ 220 (323)
T COG2515 158 PL-GALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE 220 (323)
T ss_pred cc-ccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH
Confidence 43 35699999999999986 479999999999999999999999999999999998887653
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.94 E-value=1.8e-26 Score=193.60 Aligned_cols=205 Identities=23% Similarity=0.271 Sum_probs=159.6
Q ss_pred hHhhhcccCCCceeecccccCcC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEe-eCCChHHHHH
Q 027405 9 AKDVTELIGKTPLVYLNRIVDGC--VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE-PTSGNTGIGL 85 (224)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~--~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~ssGN~~~al 85 (224)
.+.....-++|||++.++|.+.+ ..+||+|.|+..||||||...|......+..+|. ..++| ...|.||.|+
T Consensus 69 ~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAl 143 (432)
T COG1350 69 REAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSAL 143 (432)
T ss_pred HHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHH
Confidence 33333334799999999998654 4799999999999999999999999999999986 44554 6669999999
Q ss_pred HHHHHHcCCeEEEEEcCCC---CHHHHHHHHhCCCEEEEeCCCCC----------------hHHHHHHHHHHHHhCC-Ce
Q 027405 86 AFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARG----------------MKGAVQKAEEIRDKTP-NS 145 (224)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~~~~----------------~~~~~~~a~~~~~~~~-~~ 145 (224)
+++|+.+|++|+|||-... .+.++.+|+.|||+|+..+.+.+ .-=|+..|-+.+-+++ ..
T Consensus 144 slA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~k 223 (432)
T COG1350 144 SLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTK 223 (432)
T ss_pred HHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCce
Confidence 9999999999999998743 56788899999999998774211 1125556655555554 34
Q ss_pred EEeCCCCCCcchHhHHHhHHHHHHHhh---CCCCCEEEEccCchhHHHHHHHHHHhc---C-CCcEEEEEeCCCCccccC
Q 027405 146 YVLQQFENPANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLKEH---N-PEIKLYGVEPVESAVLSG 218 (224)
Q Consensus 146 ~~~~~~~~~~~~~~g~~t~a~Ei~~q~---~~~~d~iv~pvG~Gg~~~Gi~~~~k~~---~-~~~~vigve~~~~~~~~~ 218 (224)
|.+...-|. ...|+..+|+|..+|+ +..||+||.|||+|++++|+..-|-.. + ...|+|+|||..+|.|..
T Consensus 224 Y~lGSVlnh--vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~ 301 (432)
T COG1350 224 YSLGSVLNH--VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTK 301 (432)
T ss_pred ecchhHHHH--HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCcccc
Confidence 444443343 3679999999996665 567999999999999999998866422 2 228999999999999988
Q ss_pred CC
Q 027405 219 GK 220 (224)
Q Consensus 219 ~~ 220 (224)
|.
T Consensus 302 Ge 303 (432)
T COG1350 302 GE 303 (432)
T ss_pred ce
Confidence 73
No 83
>PRK09225 threonine synthase; Validated
Probab=99.93 E-value=4.8e-25 Score=198.01 Aligned_cols=178 Identities=14% Similarity=0.084 Sum_probs=146.5
Q ss_pred CCceeecccccCcCCceEEEEeCCCCCCCChhhHHHHH---HHHHHHHcCCCCCCCcEEEeeCCChHHHHH-HHHHHHcC
Q 027405 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYS---MIADAEEKGLIRPGESVLIEPTSGNTGIGL-AFMAAAKG 93 (224)
Q Consensus 18 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~---~l~~a~~~g~~~~g~~~vv~~ssGN~~~al-A~~a~~~g 93 (224)
.+||.+++ .++|+.--+++||||||||++.. ++.++.+ +. ..+|+++||||+|.|+ |.++...|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 37877764 26899999999999999999998 7888877 42 3789999999999998 67888899
Q ss_pred CeEEEEEcCC-CCHHHHHHHHhC-CCEEEEeCCCCChHHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhHHHhHHH
Q 027405 94 YRLIITMPAS-MSLERRMVLLAF-GAELVLTDPARGMKGAVQKAEEIRDKT-----PNSYVLQQFENPANPKIHYETTGP 166 (224)
Q Consensus 94 ~~~~ivvp~~-~~~~~~~~~~~~-Ga~V~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~a~ 166 (224)
++|+|++|++ ++..++.+|..+ |++|+.+..+++|++|++.++++.++. .+++-.|.. |+.. +.++.+.+.
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSI-NIGR-LLAQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEecc-CHHH-HHHHHHHHH
Confidence 9999999996 899999999999 998844443358999999998876551 145655653 6665 789999999
Q ss_pred HHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEe
Q 027405 167 EIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (224)
Q Consensus 167 Ei~~q~~~---~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve 209 (224)
|+++|+.+ .||.|++|+|+||.+.|.+.+.+.-.|-.|+|+++
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~ 279 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT 279 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe
Confidence 99999964 38999999999999999999944444656999998
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.93 E-value=3.1e-24 Score=192.88 Aligned_cols=180 Identities=13% Similarity=0.045 Sum_probs=147.3
Q ss_pred CceeecccccCcCCceEEEEeCCCCCCCChhhHHHHHH---HHHHHHcCCCCCCCcEEEeeCCChHHHH-HHHHHHHcCC
Q 027405 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSM---IADAEEKGLIRPGESVLIEPTSGNTGIG-LAFMAAAKGY 94 (224)
Q Consensus 19 TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~---l~~a~~~g~~~~g~~~vv~~ssGN~~~a-lA~~a~~~g~ 94 (224)
+||.++. .++|++-.+++||||||||++..+ +..+.++.. +...|+++||||+|.| ++.++...|+
T Consensus 88 ~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 7777764 268999999999999999999876 667765411 2378999999999999 5788888999
Q ss_pred eEEEEEcCC-CCHHHHHHHHhCCC---EEEEeCCCCChHHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhHHHhHH
Q 027405 95 RLIITMPAS-MSLERRMVLLAFGA---ELVLTDPARGMKGAVQKAEEIRDKT-----PNSYVLQQFENPANPKIHYETTG 165 (224)
Q Consensus 95 ~~~ivvp~~-~~~~~~~~~~~~Ga---~V~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~a 165 (224)
+|+|++|.+ ++..++.+|..+|+ +++.+++ +|++|++.++++.++. -+++-.|. .|+.. +.++.+.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHHH
Confidence 999999996 89999999999996 7777775 8999999998876542 14555555 36655 68999999
Q ss_pred HHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027405 166 PEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212 (224)
Q Consensus 166 ~Ei~~q~~~----~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~ 212 (224)
.|+++|+.+ .+|.|+||+|+||.+.|.+.+.+.-.|-.|+|+++.++
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n 284 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN 284 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence 999999963 58999999999999999999976555667999976654
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.93 E-value=3.1e-25 Score=187.60 Aligned_cols=194 Identities=21% Similarity=0.220 Sum_probs=146.3
Q ss_pred cccCCCceeecccccCcC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHH
Q 027405 14 ELIGKTPLVYLNRIVDGC--VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91 (224)
Q Consensus 14 ~~~~~TPl~~~~~l~~~~--~~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~ 91 (224)
...++|||++.++|.+.+ +.+||+|+|++|||||||...+...+..|.+.|+ ...|.+...|.||.|+|.+|++
T Consensus 118 y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~ 193 (477)
T KOG1395|consen 118 YLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAK 193 (477)
T ss_pred HcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHH
Confidence 456789999999998664 5899999999999999999999999999999987 3566678889999999999999
Q ss_pred cCCeEEEEEcCC---CCHHHHHHHHhCCCEEEEeCC-CCChHHHHHHHHH-HHHhCCCeEEeCCC-CC----CcchHhHH
Q 027405 92 KGYRLIITMPAS---MSLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEE-IRDKTPNSYVLQQF-EN----PANPKIHY 161 (224)
Q Consensus 92 ~g~~~~ivvp~~---~~~~~~~~~~~~Ga~V~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~~-~~----~~~~~~g~ 161 (224)
+|++|+|+|... ....++.+|+.+||+|+.+.. ....+++-..+-+ +....+-.+|+-.. .. |.....-+
T Consensus 194 FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fh 273 (477)
T KOG1395|consen 194 FGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFH 273 (477)
T ss_pred hCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHH
Confidence 999999999864 356788999999999999874 2234444444322 22222223333221 11 11123345
Q ss_pred HhHHHHHHHhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027405 162 ETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212 (224)
Q Consensus 162 ~t~a~Ei~~q~----~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~ 212 (224)
.+++-|-..|. +..||.||.|+|+|++.+|++.-|..- ..++.||||..+
T Consensus 274 svIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaag 327 (477)
T KOG1395|consen 274 SVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAG 327 (477)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecc
Confidence 77777766654 345999999999999999999988763 348999998766
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.87 E-value=1.8e-21 Score=162.30 Aligned_cols=208 Identities=21% Similarity=0.255 Sum_probs=173.0
Q ss_pred cccCCCceeeccccc--------CcCCceEEEEeCCCCC-CCChhhHHHHHHHH-H----HHHcCCCCCC----------
Q 027405 14 ELIGKTPLVYLNRIV--------DGCVARIAAKLEMMEP-CSSVKDRIGYSMIA-D----AEEKGLIRPG---------- 69 (224)
Q Consensus 14 ~~~~~TPl~~~~~l~--------~~~~~~l~~K~E~~~p-tGS~K~R~a~~~l~-~----a~~~g~~~~g---------- 69 (224)
.++.++||++.+.+. .....++|+|+|++.| +||+|.|+-.|-+. + |++.|-+.-.
T Consensus 74 ~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~ 153 (443)
T COG3048 74 GGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEE 153 (443)
T ss_pred CCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHH
Confidence 567889999887653 2235699999999999 89999999877764 2 4455543222
Q ss_pred ------CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCC
Q 027405 70 ------ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTP 143 (224)
Q Consensus 70 ------~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~ 143 (224)
.-.|...|+||.|+++..+.+.+|+++++-|+.++.++|.++++..|.+|+.... ||..+.+.-++-++..|
T Consensus 154 f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP 231 (443)
T COG3048 154 FKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDP 231 (443)
T ss_pred HHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCC
Confidence 2257789999999999999999999999999999999999999999999999984 88999999999888888
Q ss_pred CeEEeCCCCCCcchHhHHHhHHHHHHHhhCC--------CCCEEEEccCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCc
Q 027405 144 NSYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESA 214 (224)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~--------~~d~iv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigve~~~~~ 214 (224)
.+||++.-+ ..+...||...+..+..|++. .|-.|..|||-||.-.|++.++|..+ .+|+++-+||..||
T Consensus 232 ~c~FiDDE~-S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsP 310 (443)
T COG3048 232 NCFFIDDEN-SRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 310 (443)
T ss_pred ceEEecccc-hhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCCh
Confidence 999998754 444478999999999999852 46789999999999999999999764 67999999999999
Q ss_pred cccCCC-CCCC
Q 027405 215 VLSGGK-PGGL 224 (224)
Q Consensus 215 ~~~~~~-~~~~ 224 (224)
+|.-|. .|.|
T Consensus 311 cMlLGv~tGlH 321 (443)
T COG3048 311 CMLLGVYTGLH 321 (443)
T ss_pred HHHHhhhhccc
Confidence 998773 4443
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=92.47 E-value=1.4 Score=34.70 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCeE-EEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhH
Q 027405 82 GIGLAFMAAAKGYRL-IITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 160 (224)
Q Consensus 82 ~~alA~~a~~~g~~~-~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (224)
|..+.++++.+|.++ .-+.+.+.-..-++.+...+-+|.+++.+ -+...+.++.+.++.++.-...-+.-+.+ ..-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence 467888889888877 33322333445566677788899999863 34455566667777665443322222221 111
Q ss_pred HHhHHHHHHHhhC-CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEE
Q 027405 161 YETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (224)
Q Consensus 161 ~~t~a~Ei~~q~~-~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv 208 (224)
. .+|++++. ..||.|+++.|+---= -.....+...+..-+++|
T Consensus 90 ~----~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 90 E----EAIINRINASGPDIVFVGLGAPKQE-RWIARHRQRLPAGVIIGV 133 (172)
T ss_pred H----HHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE
Confidence 2 33444432 3589999999886432 222333333343444444
No 88
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=92.30 E-value=1.6 Score=37.59 Aligned_cols=88 Identities=24% Similarity=0.270 Sum_probs=65.1
Q ss_pred eEEEEeCCCCC-----CCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HH
Q 027405 34 RIAAKLEMMEP-----CSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LE 107 (224)
Q Consensus 34 ~l~~K~E~~~p-----tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~ 107 (224)
+-++|.++--| |-+.---.|+-||.+-.+.. +|+..+--++.+--|+++--.|+.+||+.+-++..... ..
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 56777777555 55666667888999888754 46543334555667788888999999999999988654 44
Q ss_pred HHHHHHhCCCEEEEeCC
Q 027405 108 RRMVLLAFGAELVLTDP 124 (224)
Q Consensus 108 ~~~~~~~~Ga~V~~~~~ 124 (224)
..++++.+||+-++.+.
T Consensus 201 l~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHcCCceEecHH
Confidence 56778999999888773
No 89
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=91.16 E-value=2.1 Score=34.26 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=41.2
Q ss_pred EEEe-eCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 027405 72 VLIE-PTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKT 142 (224)
Q Consensus 72 ~vv~-~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~ 142 (224)
++++ .|||-+|.++|..+...|.+++++......+. -.+.+++.+. +.++..+.+++...+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~---sa~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVE---SAEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-S---SHHHHHHHHHHHGGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEec---chhhhhhhhccccCcc
Confidence 3444 79999999999999999999999987743221 2467888777 5677777777776554
No 90
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=90.74 E-value=3.2 Score=36.10 Aligned_cols=58 Identities=28% Similarity=0.460 Sum_probs=44.3
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
...+++|++.+|.+.+|.-|....-.|+.+|. +++++..+ ..|.+.++.+||+.+..-
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s--~~k~~~~~~lGAd~vi~y 194 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSS--SEKLELLKELGADHVINY 194 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecC--HHHHHHHHhcCCCEEEcC
Confidence 46678888999999999999999999999998 44443333 355558889999776653
No 91
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.20 E-value=4.9 Score=34.87 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=41.6
Q ss_pred HHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+..+..+.++++.+|.+. |..|.+++..|+.+|.+++++ +....+++.++.+|++.+..
T Consensus 158 a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 334455677766666665 999999999999999974433 22456777778899875543
No 92
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.02 E-value=2.8 Score=36.45 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=41.2
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 67 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.++.+.+|.+ .|..|...+..|+.+|.+++++.+....+.|++.++.+|++.+
T Consensus 171 ~~g~~vlI~G-~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 171 WNPRRALVLG-AGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 4565666665 6999999999999999986666554446788888999999974
No 93
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=89.49 E-value=5.4 Score=31.30 Aligned_cols=121 Identities=18% Similarity=0.126 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCCeEEEEEcC-CCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhH
Q 027405 82 GIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 160 (224)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~-~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (224)
|..+.++++.+|.+..--++. +.-..-++.+...+.+|.+++.. -+...+.++.+.++.++.-.....+.+.. ...
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFG-PEE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCC-hhh
Confidence 467888999998873222222 12234456667778999999863 24444555667777665443322222221 111
Q ss_pred HHhHHHHHHHhhC-CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeC
Q 027405 161 YETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEP 210 (224)
Q Consensus 161 ~~t~a~Ei~~q~~-~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~ 210 (224)
-.++++++. ..||.|+++.|+---= -.....+...+..-+++|-.
T Consensus 88 ----~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 88 ----EEEIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred ----HHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEece
Confidence 112444442 3599999999985532 22333444445555565543
No 94
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.20 E-value=4.9 Score=29.21 Aligned_cols=40 Identities=28% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 82 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
|+..+..|+.+|.+++++.+ ...|++.++.+|++.+....
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~ 42 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYS 42 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhccccccccc
Confidence 55566667777744444432 45667777777776666554
No 95
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.99 E-value=8.4 Score=32.65 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=43.4
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.+|+..+|.+.+|..|.++...|+.+|++++++. .+..+.+.++.+|++-++..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeC
Confidence 445567787777888789999999999999999855443 23567777788998654433
No 96
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.19 E-value=9 Score=34.15 Aligned_cols=58 Identities=26% Similarity=0.299 Sum_probs=42.7
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.++..+.++++.+| ...|..|+.++..|+.+|.+.+++... ...+++..+.+|++.+.
T Consensus 178 ~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~--~~~r~~~a~~~Ga~~v~ 235 (393)
T TIGR02819 178 AVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGDL--NPARLAQARSFGCETVD 235 (393)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHcCCeEEe
Confidence 34455677766666 667899999999999999987664433 46788888889998543
No 97
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=88.10 E-value=16 Score=33.60 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHHHHcCCeEEEEE-----------cCCCCHHHHHHHHhCCCEEEEeCCC---CChH-HHHHHHHHHHHhCCCeE---
Q 027405 85 LAFMAAAKGYRLIITM-----------PASMSLERRMVLLAFGAELVLTDPA---RGMK-GAVQKAEEIRDKTPNSY--- 146 (224)
Q Consensus 85 lA~~a~~~g~~~~ivv-----------p~~~~~~~~~~~~~~Ga~V~~~~~~---~~~~-~~~~~a~~~~~~~~~~~--- 146 (224)
+..+|+..|+++++.. |..+........-..|++.+....+ +.|. ++.+...+.+++-+..+
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 5567889999988865 3444556666777789998887643 2232 44444333333221111
Q ss_pred --EeCCCC-CC--cchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027405 147 --VLQQFE-NP--ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212 (224)
Q Consensus 147 --~~~~~~-~~--~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~ 212 (224)
|-.+.. .. ..........+.++.+.+ +.+.||+.+-||.++--+++ ..|.+.|+++.|..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~ 406 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNE 406 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCH
Confidence 111100 00 011234455556777776 57899999999999655544 58889999999876
No 98
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=86.80 E-value=11 Score=28.40 Aligned_cols=69 Identities=28% Similarity=0.249 Sum_probs=44.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC----HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS----LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIR 139 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~----~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~ 139 (224)
..+|++.++.-|.++|..-...|-..++++..+.. ......++..|.++..+..+ .+.++..+..++..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 46888999999999999988887766666665521 22344556778888776643 23334444445554
No 99
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=86.74 E-value=2.3 Score=37.35 Aligned_cols=86 Identities=23% Similarity=0.234 Sum_probs=52.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHhC-CCeEEe
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKT-PNSYVL 148 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~~-~~~~~~ 148 (224)
...+..+||..|+-+|+.+..++-.-.|++|.-+...-...+...|+++++++.+ .++.=..+..++...++ .-.+..
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~ 120 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVV 120 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEe
Confidence 5688899999999999888544444788889988888888999999999999864 23221112223333332 233455
Q ss_pred CCCCCCcc
Q 027405 149 QQFENPAN 156 (224)
Q Consensus 149 ~~~~~~~~ 156 (224)
+.++++..
T Consensus 121 h~~G~~~d 128 (363)
T PF01041_consen 121 HLFGNPAD 128 (363)
T ss_dssp -GGGB---
T ss_pred cCCCCccc
Confidence 66666654
No 100
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.67 E-value=9.7 Score=32.80 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC-CCCHHHHHHHHhCC-CEEEEeCCCCChHHHHHHHHHHHHhCC
Q 027405 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFG-AELVLTDPARGMKGAVQKAEEIRDKTP 143 (224)
Q Consensus 69 g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~-~~~~~~~~~~~~~G-a~V~~~~~~~~~~~~~~~a~~~~~~~~ 143 (224)
|+..+||++++-.|+++|.-.+++|.+.++.--+ ....+..+.++..| ++-..|+- .+.++..+.++++.++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdi-s~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDI-SDREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecC-CCHHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999866555332 33455666677667 44456775 367888889999988873
No 101
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.30 E-value=19 Score=34.07 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=38.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
..++....|..|+.+|..-...|++++++- . ++.+.+.++.+|.+++.-+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID-~--d~~~v~~~~~~g~~v~~GDa 451 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLE-R--DISAVNLMRKYGYKVYYGDA 451 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEE-C--CHHHHHHHHhCCCeEEEeeC
Confidence 457888899999999999888999987763 2 24566667778877776664
No 102
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.29 E-value=10 Score=33.21 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=41.6
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+...+.++++.+|.+ +|..|..++..|+.+|.+.++++. ....+++.++.+|++.+..
T Consensus 185 ~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~ 242 (371)
T cd08281 185 NTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVN 242 (371)
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeC
Confidence 445567777777765 688999999999999996444443 3466777888899965443
No 103
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.27 E-value=19 Score=34.34 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=40.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
..++....|..|+.+|..-+..|++.+++ .. ++.+.+.++.+|.+|+.-+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI-D~--d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL-DH--DPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE-EC--CHHHHHHHHhcCCeEEEEeC
Confidence 45788999999999999988899998877 22 35567777778888877765
No 104
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=86.18 E-value=5.3 Score=34.49 Aligned_cols=45 Identities=24% Similarity=0.177 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEEEcCCC--CHHHHHHHHhCCCEEEEeC
Q 027405 79 GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 79 GN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.++..+++.+|++++++.|+.. +...++.++..|++|..++
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 69999999999999999999999864 5555566667788887665
No 105
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.91 E-value=6.2 Score=34.47 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=45.8
Q ss_pred HHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.++.+..+.||...-|..-+| .|.---.+|+.+|++++++-. .+..|.+.++.+||++.....
T Consensus 172 spLk~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~--~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 172 SPLKRSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVIST--SSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred ehhHHcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeC--CchhHHHHHHhcCcceeEEec
Confidence 344444466887666666666 776666779999999999833 345677888999999987764
No 106
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.75 E-value=7.6 Score=32.57 Aligned_cols=59 Identities=31% Similarity=0.331 Sum_probs=41.4
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.++....++++.+|. ..|..|...+..|+.+|.+.++++ +....|++..+.+|++.+..
T Consensus 113 l~~~~~~~g~~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~ 171 (280)
T TIGR03366 113 LEAAGDLKGRRVLVV-GAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALAE 171 (280)
T ss_pred HHhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEecC
Confidence 333333466666665 468899999999999999855555 33567888889999965443
No 107
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.67 E-value=6.7 Score=33.90 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=41.3
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.++....++++.+|.+ +|..|++.+..|+.+|.+.++++.. .+.+++.++.+|++.+..
T Consensus 162 l~~~~~~~g~~VlV~G-~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 162 AHQAGDLQGKRVFVSG-VGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLVN 220 (343)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 3333344666666665 5899999999999999965555443 367788888899976543
No 108
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=85.64 E-value=14 Score=31.54 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=43.5
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.+.+.+|+..+|.+.+|..|.+++..|+.+|.+++++.. +..+.+.++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4556778877777777899999999999999998655433 356777778899865543
No 109
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=85.57 E-value=10 Score=31.01 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=45.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+|.-|.++|......|.+++++-.........+.+...|.++..+..+ .+.++..+..++..++
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 6789999999999999998889998877644322222334455567776544321 2344445555555443
No 110
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=85.55 E-value=14 Score=33.07 Aligned_cols=129 Identities=15% Similarity=0.188 Sum_probs=72.1
Q ss_pred EEeeCCC-hHHHHHHHHHHHcCCeEEEEEcC-CCC----HHHHHHHHhCCC-EEEEeCCCCChHHHHHHHHHHHHhCCCe
Q 027405 73 LIEPTSG-NTGIGLAFMAAAKGYRLIITMPA-SMS----LERRMVLLAFGA-ELVLTDPARGMKGAVQKAEEIRDKTPNS 145 (224)
Q Consensus 73 vv~~ssG-N~~~alA~~a~~~g~~~~ivvp~-~~~----~~~~~~~~~~Ga-~V~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (224)
|+..|+| .+...+.|...+.+++++.|.-. .-+ ....+....+|| +++.++....|. .+.+...-+- +.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HH
Confidence 3456776 56677788888778999998653 222 233445678899 999998532221 1222222221 23
Q ss_pred EEeCCCCC-CcchHhHHHhHHHHHHHhhCCCCCEEEE-ccCchhHHHHHHHHHHhcCCCcEEEE
Q 027405 146 YVLQQFEN-PANPKIHYETTGPEIWKGTGGKIDALVS-GIGTGGTVTGAGKYLKEHNPEIKLYG 207 (224)
Q Consensus 146 ~~~~~~~~-~~~~~~g~~t~a~Ei~~q~~~~~d~iv~-pvG~Gg~~~Gi~~~~k~~~~~~~vig 207 (224)
.|-+.|-. ....+--......|+.++. ..++|.- +.|.|-...=.-.+++.+.|+.+|++
T Consensus 77 ~Yeg~YpL~tsl~RplIa~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPLIAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCCCHHHHHHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCccccccchHHHHHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 33332211 1111223344556777776 4688887 56889999999999999999999885
No 111
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.42 E-value=11 Score=32.73 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=41.3
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+.++++.+|.+ +|..|.+++..|+.+|.+.++.+.. ...+++.++.+|++-++
T Consensus 170 ~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVIG-CGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 445567787777775 6889999999999999975554433 35677777889986444
No 112
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.38 E-value=11 Score=32.35 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=43.0
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+...+.++.+.+|.+.+|..|.+++..|+.+|.+++++... . +++.++.+|++.+..
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~~ 227 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVIL 227 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEEe
Confidence 345567778777887888999999999999999996655432 2 566667789875443
No 113
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=85.03 E-value=25 Score=30.58 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=30.9
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC-CcEEEEEeC
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP-EIKLYGVEP 210 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~-~~~vigve~ 210 (224)
...++++.- +++|.|+++ +...+.|+..++++.+. +++|+|..-
T Consensus 199 ~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 199 TAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred HHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeCC
Confidence 445666654 589999987 33344578889988754 688899863
No 114
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=84.82 E-value=6.5 Score=31.86 Aligned_cols=50 Identities=28% Similarity=0.401 Sum_probs=40.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+|+.|..++.+....+.++++++... +......++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 6788999999999999888999999998776 4445666777899987554
No 115
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.71 E-value=27 Score=32.72 Aligned_cols=51 Identities=24% Similarity=0.145 Sum_probs=40.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.+++....|+.|+.+|..-+..|++++++-. + +.+.+.++.+|.+++.-+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~-d--~~~~~~~~~~g~~~i~GD~ 468 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET-S--RTRVDELRERGIRAVLGNA 468 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC-C--HHHHHHHHHCCCeEEEcCC
Confidence 4578889999999999999999999877632 2 4566677778888887775
No 116
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=84.44 E-value=19 Score=31.07 Aligned_cols=59 Identities=25% Similarity=0.391 Sum_probs=43.2
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.++...+| ...|..|.+++..|+.+|...++++... ..+.+.++.+|++.+...
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~~--~~~~~~~~~~g~~~v~~~ 226 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDLK--DERLALARKFGADVVLNP 226 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcCC--HHHHHHHHHcCCcEEecC
Confidence 4556677766666 6669999999999999998876665544 566677788898665433
No 117
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.41 E-value=19 Score=30.89 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=42.4
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHh-CCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~V~~ 121 (224)
+...+.+|+..+|.+.+|..|.+++..|+.+|.+++++.+ ...+.+.++. +|++-+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 3455778878888888899999999999999998555432 3566777766 8986443
No 118
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=83.81 E-value=9.5 Score=33.10 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=49.1
Q ss_pred HHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHh-CCCEEEEeCCCCChH
Q 027405 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELVLTDPARGMK 129 (224)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~V~~~~~~~~~~ 129 (224)
+++-|..++|.+.+|++.+|-.|.-+.-.|+..|++++-+... .+|.+.+.. +|-+..+--...++.
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg---~eK~~~l~~~lGfD~~idyk~~d~~ 209 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG---AEKCDFLTEELGFDAGIDYKAEDFA 209 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC---HHHHHHHHHhcCCceeeecCcccHH
Confidence 4566777888899999999999999889999999999888543 466666655 777665543333443
No 119
>PRK08703 short chain dehydrogenase; Provisional
Probab=83.64 E-value=18 Score=29.12 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=26.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
.+.+|++.+|.-|.++|......|.+++++..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 36789999999999999988888988766644
No 120
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.01 E-value=23 Score=30.79 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=42.2
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHH-hCCCEEEEe
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~-~~Ga~V~~~ 122 (224)
+.+.+.+|++.+|.+.+|..|.++...|+.+|.+++++. .+..+++.++ .+|++-+..
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 345677887777888889999999999999999854432 2456677665 689865543
No 121
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=82.86 E-value=18 Score=28.39 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=70.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
+++..-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. . ++++ +.++. +.+.+.-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~e-------ll~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLDE-------LLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHHH-------HHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehhh-------hcchh-hhhhhhh
Confidence 5677788999999999999999999999877654333 223344422 1 2333 23333 5665544
Q ss_pred CCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHH--HHHHHHHHhcCCCcEEEEEe
Q 027405 151 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV--TGAGKYLKEHNPEIKLYGVE 209 (224)
Q Consensus 151 ~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--~Gi~~~~k~~~~~~~vigve 209 (224)
-.++.+ ...+..|.++++ +++.+++-++-|+.+ ..+..+++.- ++.-.+.+
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~g--~i~ga~lD 152 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALESG--KIAGAALD 152 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHTT--SEEEEEES
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhhc--cCceEEEE
Confidence 334333 235567888888 478999999999875 4556666542 24444444
No 122
>PRK12743 oxidoreductase; Provisional
Probab=82.48 E-value=11 Score=31.00 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=46.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+.+|++.+|.-|.++|......|.+++++...+.. ....+.++..|.++..+..+ .+.++..+...++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 67889999999999999999999988777554322 22345566678777665432 2334444445555444
No 123
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=82.29 E-value=19 Score=28.50 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCeEEEEEcC-CCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEe--CCCCCCcchHh
Q 027405 83 IGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVL--QQFENPANPKI 159 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~-~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~ 159 (224)
..+.++++.+|.+..--++. +.-...++.....|..|.+++.. -+...+.++.+.++.++.-.. ++|.++.
T Consensus 14 ~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~---- 87 (177)
T TIGR00696 14 IGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGAFGPLEPE---- 87 (177)
T ss_pred HHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEECCCCChH----
Confidence 66788888888653211221 11223444556678889999863 234455566676666554322 2332221
Q ss_pred HHHhHHHHHHHhhC-CCCCEEEEccCchh
Q 027405 160 HYETTGPEIWKGTG-GKIDALVSGIGTGG 187 (224)
Q Consensus 160 g~~t~a~Ei~~q~~-~~~d~iv~pvG~Gg 187 (224)
--.++++++. ..+|.|+++.|+=-
T Consensus 88 ----~~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 88 ----ERKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred ----HHHHHHHHHHHcCCCEEEEEcCCcH
Confidence 1123444442 25899999998743
No 124
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=82.21 E-value=28 Score=29.75 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=39.9
Q ss_pred HcCCCCCC--CcEEEeeCCChHHHHHHHHHHHcCC-eEEEEEcCCCCHHHHHHHHh-CCCEEEEeC
Q 027405 62 EKGLIRPG--ESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLA-FGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g--~~~vv~~ssGN~~~alA~~a~~~g~-~~~ivvp~~~~~~~~~~~~~-~Ga~V~~~~ 123 (224)
+.+.+.++ ++.+|.+.+|..|.++...|+.+|. +++++.+ +..+.+.++. +|++-+...
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 33445554 5777777789999999999999998 5555433 3456666654 898655443
No 125
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.69 E-value=18 Score=31.14 Aligned_cols=59 Identities=27% Similarity=0.387 Sum_probs=40.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+...+.++...+|.+ +|..|.+++..|+.+|++.++++.. +..+.+.++.+|++.+...
T Consensus 166 ~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~~--~~~~~~~~~~~ga~~~i~~ 224 (351)
T cd08233 166 RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSEP--SEARRELAEELGATIVLDP 224 (351)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEECC
Confidence 445566776666665 6889999999999999955444432 4556667777888765543
No 126
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=80.86 E-value=9.2 Score=32.99 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=40.6
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.++..+.+|++.+|.+. |..|.+++..|+.+|.+++++ .. .+.|++.++.+|++.+.
T Consensus 158 ~~~~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~-~~--~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVM-TR--GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEE-eC--ChHHHHHHHHhCCceec
Confidence 34456777877677664 888988888999999874443 22 35578888999997543
No 127
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.86 E-value=19 Score=29.51 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=45.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
...+|++.++.-|.++|......|.+++++-... .....+.++..|.++..+..+ .+.++..+..++..++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999889999988764332 233344556678777554422 2344444444544443
No 128
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.72 E-value=20 Score=31.38 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=52.1
Q ss_pred HHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 58 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
-+|-+++.+++|. +++.-..|.-|+..-.+|+.+|-+=++++. ..+.+++..+.+||+++.-..
T Consensus 159 ~HAcr~~~vk~Gs-~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 159 VHACRRAGVKKGS-KVLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhhcCcccCC-eEEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 3677888888985 466688999999999999999998888754 447888888899999976553
No 129
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.66 E-value=19 Score=29.52 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=44.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
.+.+|++.+|.-|.++|..-...|.+++++..........+.+...+.++..+..+ .+.++..+..++..++
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 37789999999999999998889999888765521122233445566666544432 2333444444544443
No 130
>PRK05993 short chain dehydrogenase; Provisional
Probab=80.26 E-value=29 Score=28.86 Aligned_cols=64 Identities=25% Similarity=0.195 Sum_probs=43.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 138 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~ 138 (224)
..+|++.+|.-|.++|......|.+++++... ..+++.+...+.+++.++-. +.++..+..++.
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~-d~~~~~~~~~~~ 69 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA-EPESIAALVAQV 69 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC-CHHHHHHHHHHH
Confidence 67889999999999999988899988776543 33444555567777777653 333333444444
No 131
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=80.11 E-value=23 Score=30.80 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=40.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+...+.+|+..+|.+ +|..|.+++..|+.+|.+.++++..+ ..+++.++.+|++.+..
T Consensus 181 ~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~G~~~vi~~~~~--~~~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 181 NVAKVKKGSTVAIFG-LGAVGLAVAEGARIRGASRIIGVDLN--PSKFEQAKKFGVTEFVN 238 (369)
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHcCCceEEc
Confidence 345567787777765 69999999999999998544444333 56777788899865443
No 132
>PRK06182 short chain dehydrogenase; Validated
Probab=79.75 E-value=33 Score=28.30 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=44.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
..+|++++|.-|.++|......|.+++++... ..+++.+...+.+++.++-. +.++..+..+++.++
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 67889999999999999988899988876543 23444444567777777652 344444444544443
No 133
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=79.73 E-value=9.5 Score=29.51 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHcCCeEEEEEcCC--CCH--HHH----HHHHhCCCEEEEeC
Q 027405 78 SGNTGIGLAFMAAAKGYRLIITMPAS--MSL--ERR----MVLLAFGAELVLTD 123 (224)
Q Consensus 78 sGN~~~alA~~a~~~g~~~~ivvp~~--~~~--~~~----~~~~~~Ga~V~~~~ 123 (224)
-+|.+.+++..+..+|..++++.|+. .+. ..+ +.....|.++..++
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 38999999999999999999999987 454 223 23345588888885
No 134
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.65 E-value=24 Score=32.83 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=39.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
..++....|..|++.+.+|+.+|-+++++ +....++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 45777889999999999999999863333 335778889999999966554
No 135
>PLN02740 Alcohol dehydrogenase-like
Probab=79.57 E-value=24 Score=30.99 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=40.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+...+.+|++.+|.+ .|.-|.+++..|+.+|.+.++.+.. ...+++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G~~~Vi~~~~--~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIFG-LGAVGLAVAEGARARGASKIIGVDI--NPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCcEEEEcC--ChHHHHHHHHcCCcEEE
Confidence 445677786766665 6999999999999999854444332 45677788889997543
No 136
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=79.52 E-value=30 Score=27.81 Aligned_cols=68 Identities=22% Similarity=0.164 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHH-HhCCCEEE
Q 027405 50 DRIGYSMIADAEEK--GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELV 120 (224)
Q Consensus 50 ~R~a~~~l~~a~~~--g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~V~ 120 (224)
-+++.+.+..+.+. +......++++.-..||.|..+|......|.+++++ ..+ ..+++.+ ..+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D~~--~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-DIN--EEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-cCC--HHHHHHHHHHcCCEEE
Confidence 36777777777665 222222356777777999999999999999988743 332 3333333 34476643
No 137
>PRK08589 short chain dehydrogenase; Validated
Probab=79.34 E-value=21 Score=29.66 Aligned_cols=72 Identities=17% Similarity=0.100 Sum_probs=44.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
...+|++.++--|.++|..-...|.+++++-.........+.++..+.++..+..+ .+.++.....++..++
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 36788899899999999988888999888755421122244455567666554422 2333444444555443
No 138
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.20 E-value=34 Score=29.23 Aligned_cols=56 Identities=27% Similarity=0.445 Sum_probs=39.9
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
...+.+++..+|. .+|..|.+++..|+..|++.++.+... ..+.+.++.+|++-+.
T Consensus 163 ~~~~~~g~~vlI~-g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~ 218 (345)
T cd08287 163 SAGVRPGSTVVVV-GDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIV 218 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEe
Confidence 4455667666774 579999999999999999866655544 4566777788885433
No 139
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=79.16 E-value=29 Score=28.36 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=44.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|.-|.++|......|.+++++- ........+.++..+.++..+..+ .+.++..+..++..+
T Consensus 12 ~~lItG~~~gIG~a~a~~l~~~G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 12 VAVVTGCDTGLGQGMALGLAEAGCDIVGIN-IVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEec-CcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 678999999999999999988999877653 222344445556667676655432 233444444444433
No 140
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=79.08 E-value=29 Score=29.63 Aligned_cols=59 Identities=27% Similarity=0.376 Sum_probs=40.7
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.++..+.++++.+|.+ .|..|.+++..|+.+|.+-++++.. ...+++.++.+|++.+..
T Consensus 156 l~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi~~~~--~~~~~~~~~~~ga~~~i~ 214 (339)
T cd08239 156 LRRVGVSGRDTVLVVG-AGPVGLGALMLARALGAEDVIGVDP--SPERLELAKALGADFVIN 214 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEEc
Confidence 3444466777777765 5889999999999999983333332 356777778889865443
No 141
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=78.62 E-value=24 Score=26.05 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=50.6
Q ss_pred HHHHHHHcCCeEEEEEcCCCCHHHHHH-HHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHh
Q 027405 85 LAFMAAAKGYRLIITMPASMSLERRMV-LLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (224)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~-~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (224)
|+...+..+.+..|+..........+. ....+.+++.=.+ .++.+++..|-+.+.+......+-..|.|......
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~--- 77 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDD--- 77 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHH---
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHH---
Confidence 345566678888888766544433332 4555666655443 68888888876665443356666666777763222
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhH
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGT 188 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~ 188 (224)
-.+..+.+. ..|.|+.|+--||.
T Consensus 78 -l~~A~~~L~-~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 78 -LEQAFEALQ-RHDVVLGPAEDGGY 100 (122)
T ss_dssp -HHHHHHHTT-T-SEEEEEBTTSSE
T ss_pred -HHHHHHHhc-cCCEEEeeccCCCE
Confidence 234445553 45999999998874
No 142
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.51 E-value=23 Score=28.87 Aligned_cols=54 Identities=11% Similarity=0.045 Sum_probs=39.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|..|.+++......|.+++++...... ....+.++..|.++..+..
T Consensus 9 ~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC
Confidence 67999999999999999999999987776544321 2334455667888766553
No 143
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=78.20 E-value=29 Score=29.65 Aligned_cols=53 Identities=26% Similarity=0.289 Sum_probs=38.5
Q ss_pred CCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 65 ~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.+.++...+|.+.++..|.+++..|+.+|++++++.+. ..+.+.++.+|++-+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v 214 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAF 214 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEE
Confidence 45667677777888889999999999999986665433 345555566776543
No 144
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=77.92 E-value=20 Score=31.36 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=40.8
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
++..+.++++.+|.+ +|..|++.+..|+.+|.+.++.+.. ...+++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~G~~~Vi~~~~--~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVFG-LGGIGLSVIQGARMAKASRIIAIDI--NPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHhCCCeEE
Confidence 445667777777765 6899999999999999954444322 46677777889986544
No 145
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=77.89 E-value=33 Score=29.32 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=38.4
Q ss_pred CCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 65 ~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+.+++..+|.+ +|..|.+++..|+.+|.+.+++.+ ...+++.++.+|++-+.
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 456666666666 899999999999999998555433 34566677888985443
No 146
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=77.80 E-value=18 Score=24.08 Aligned_cols=49 Identities=20% Similarity=0.095 Sum_probs=37.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-----H----HHHHHHHhCCCEEEE
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-----L----ERRMVLLAFGAELVL 121 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-----~----~~~~~~~~~Ga~V~~ 121 (224)
++...+|..|.-+|.+.+.+|.+++++.+.... + .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 566789999999999999999999999875421 1 124566677777764
No 147
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=77.66 E-value=30 Score=29.72 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=41.6
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+...+.++++.+|. ..|..|.+++..|+.+|.+.++.+.. ...+++.++.+|++-++
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQTF 210 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceEe
Confidence 344456677676776 46999999999999999986555433 45667777889986443
No 148
>PRK08628 short chain dehydrogenase; Provisional
Probab=77.66 E-value=25 Score=28.70 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=39.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
...+|++.+|--|.++|..-...|.+++++..........+.++..|.++..+..
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV 62 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc
Confidence 3678899899999999999888999988876543333334555666777655543
No 149
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=77.60 E-value=25 Score=29.64 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=38.2
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+...+.++...+|...+|..|.+++..|+.+|.+.+++.... .+.+.++.+|++-
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~~ 187 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD---AGVAELRALGIGP 187 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH---HHHHHHHhcCCCE
Confidence 345567777777777789999999999999999876664433 3334444467643
No 150
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=77.29 E-value=17 Score=31.80 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=40.3
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+...+.++++.+|.+ +|..|++++..|+.+|.+.++.+.. ...+++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVFG-LGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 345567777777775 6999999999999999954444433 35567777888986544
No 151
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.24 E-value=23 Score=28.88 Aligned_cols=71 Identities=17% Similarity=0.095 Sum_probs=44.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+|.-|.++|..-...|.+++++...... ......++..|.++..+..+ .+.++..+..++..++
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 67888889999999999888899987776543211 12233455667776655432 2344444455555544
No 152
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=76.91 E-value=50 Score=28.76 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=41.2
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+.++++.+|.+ +|..|.+++..|+.+|...++++.. ...+++.++.+|++-+.
T Consensus 178 ~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVFG-LGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 445677787777774 6999999999999999954444433 46677777889986443
No 153
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.87 E-value=19 Score=31.14 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=45.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+|--|.++|......|.+++++...... ....+.++..|+++..+..+ .+.++..+.+++..++
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 67889999999999999988899988777543211 22344556678887665432 2333334444444443
No 154
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.55 E-value=35 Score=29.39 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=40.3
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.+...+.++.+.+|. .+|..|.+++..|+.+|.+.++.+..+ ..+.+..+.+|++.+
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~~~ 215 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGATDI 215 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCceE
Confidence 345556777676666 468999999999999999755554443 456677777887544
No 155
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=76.54 E-value=21 Score=30.54 Aligned_cols=52 Identities=29% Similarity=0.310 Sum_probs=37.7
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 67 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+++..+|.+ .|..|.++...|+.+|.+.++++ +....+.+.++.+|++.+.
T Consensus 162 ~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLITG-AGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 3565667755 68999999999999999655555 3455677778888986544
No 156
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=76.42 E-value=5.6 Score=30.56 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=27.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~ 103 (224)
|..-.+||+|.|+|......|.+++++.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 4557899999999999999999999997754
No 157
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=76.36 E-value=59 Score=29.31 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=37.6
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHcCCCCC-CCcEEEeeCCChHHHH--HHHHHHHcCCeEEEEE
Q 027405 40 EMMEPCSSVKDRIGYSMIADAEEKGLIRP-GESVLIEPTSGNTGIG--LAFMAAAKGYRLIITM 100 (224)
Q Consensus 40 E~~~ptGS~K~R~a~~~l~~a~~~g~~~~-g~~~vv~~ssGN~~~a--lA~~a~~~g~~~~ivv 100 (224)
-+.+|.|.-+ .....+.....+|.+.. +...+|++.++..|.| +|.+. ..|...+++.
T Consensus 13 ~~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 13 TTAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 3456776533 35667777777777633 3466777777777777 45555 6788877765
No 158
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.28 E-value=41 Score=27.51 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=27.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
...+|++.++.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 367889999999999999988899987776553
No 159
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=76.10 E-value=32 Score=28.42 Aligned_cols=54 Identities=19% Similarity=0.098 Sum_probs=37.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
..+|++.+|.-|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 67889999999999999988899987776543211 2223344556777765543
No 160
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=76.04 E-value=17 Score=31.35 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=38.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--HHHHH----HHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMV----LLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--~~~~~----~~~~Ga~V~~~~ 123 (224)
+....+-+.|.+.++-.+|..+|+++++..|+...+ .-++. .+..|+++..+.
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence 444455668999999999999999999999986432 22222 244588888876
No 161
>PRK12937 short chain dehydrogenase; Provisional
Probab=76.04 E-value=39 Score=27.11 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=45.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
...+|++.+|.-|.++|..-...|.+++++.....+ ....+.++..+.++..+..+ .+.++..+..++..+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 367889999999999999998899988776544322 22334556678887766542 223333333444433
No 162
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=76.01 E-value=20 Score=29.02 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHh
Q 027405 77 TSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 77 ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
+++.-|.++|....+.|.++++.-..... ....+..+.+|.+++.++-. +.++..+...+..++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhh
Confidence 45678888888888889888887655432 12334456788888777753 334444444444444
No 163
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=75.94 E-value=39 Score=28.54 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=44.8
Q ss_pred EEEEeCCCCCCC-ChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-----HHH
Q 027405 35 IAAKLEMMEPCS-SVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-----LER 108 (224)
Q Consensus 35 l~~K~E~~~ptG-S~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-----~~~ 108 (224)
|.+..|.-.-.| .|=.|. ..+...+.++|. ...+++-..++... -.-+..|+++..+ |+... ..-
T Consensus 2 i~ir~Da~~~iG~GHv~Rc-l~LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRC-LTLARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHH-HHHHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 556666554445 455553 333344445554 24555555444432 2336788886665 44321 134
Q ss_pred HHHHHhCCCEEEEeCC
Q 027405 109 RMVLLAFGAELVLTDP 124 (224)
Q Consensus 109 ~~~~~~~Ga~V~~~~~ 124 (224)
.+.++..+.+++.++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 5666777889999985
No 164
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=75.67 E-value=31 Score=27.83 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=44.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
.+.+|++.+|.-|.++|......|.+++++.... .....+.++.++.++..+..+ .+.++.....++..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVE 76 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999999999877765432 233345556677766555432 223333334444433
No 165
>PRK08226 short chain dehydrogenase; Provisional
Probab=75.61 E-value=26 Score=28.69 Aligned_cols=53 Identities=21% Similarity=0.108 Sum_probs=35.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|.++|......|.+++++-...........+...|.++..+.
T Consensus 8 ~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 8 TALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 67899999999999999988899997766443321222333444566665544
No 166
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=75.59 E-value=24 Score=31.24 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=41.8
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
..+.++...+|.+.+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4456676777777789999999999999999875543 2345677777899865543
No 167
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=75.56 E-value=29 Score=29.25 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 69 g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+++.+|.+.+|..|.+++..|+.+|.++++.... ..+++.++.+|++-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v 195 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKEV 195 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCEE
Confidence 4466677777999999999999999986554332 345666677887443
No 168
>PRK12828 short chain dehydrogenase; Provisional
Probab=75.54 E-value=36 Score=27.05 Aligned_cols=55 Identities=20% Similarity=0.063 Sum_probs=39.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
.+.+|++++|.-|.+++......|.+++++.....+ ......+...+.+++..+-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 377899999999999999888889997777654322 2233445556777777665
No 169
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=75.31 E-value=44 Score=27.33 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=25.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
+.+|++++|.-|.++|......|.+++++..
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 3588999999999999998889998766543
No 170
>PRK06139 short chain dehydrogenase; Provisional
Probab=75.11 E-value=20 Score=31.09 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=44.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
...+|++.+|--|.++|......|.+++++...... ....+.++..|+++..+..+ .+.++..+.+++..+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 367888999999999999999999997776543211 12234556678887554321 233333444444433
No 171
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=75.09 E-value=24 Score=31.02 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=44.0
Q ss_pred HHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+++++..++||+...| ..-|-.|.-..-+|+.+|.++++| +.+..|++..+.+||+.+....
T Consensus 157 ~alk~~~~~pG~~V~I-~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 157 RALKKANVKPGKWVAV-VGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred eehhhcCCCCCCEEEE-ECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 4555566788866444 444456666666788899888777 3357788888999999888754
No 172
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=74.88 E-value=28 Score=28.60 Aligned_cols=71 Identities=15% Similarity=0.052 Sum_probs=43.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+|.-|.++|......|.+++++-..... ......++..|.++..+..+ .+.++..+...+..++
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999988899997766332211 12233445567777655432 2334444444444433
No 173
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.61 E-value=43 Score=30.12 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=46.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
.+.+|++.+|.-|.++|......|.+++++..........+.....+.+++.++-. +.++..+...+..++
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAER 281 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHh
Confidence 46788999999999999998889999877654332233333345567787777753 334444444444433
No 174
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=74.53 E-value=51 Score=27.84 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=39.3
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
.+.+.++...+|.+ +|..|.+++..|+.+|+++++ +..+....+.+.++.+|++
T Consensus 159 ~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 34556676777765 689999999999999999543 3333346677788889985
No 175
>PRK07454 short chain dehydrogenase; Provisional
Probab=74.37 E-value=32 Score=27.68 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=43.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+.+|++.+|..|.+++......|.+++++...... ....+.++..+.++..+..+ .+.++..+..++..++
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56888999999999999999999987777543211 12223344456666554432 2344444444444443
No 176
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=74.31 E-value=22 Score=30.06 Aligned_cols=57 Identities=26% Similarity=0.354 Sum_probs=40.6
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+.+.+.++.+.+|.+ .|..|.+++..|+.+|.+.+++ .. ...+++.++.+|+....
T Consensus 148 ~~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~-~~--~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLV-GR--HSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEE-cC--CHHHHHHHHHcCCcEEe
Confidence 3556677776777765 7899999999999999995443 22 25666777778886543
No 177
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=74.14 E-value=28 Score=30.46 Aligned_cols=84 Identities=12% Similarity=0.194 Sum_probs=51.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC-CCHHHHHHHHhCCCEEEEeCCCCC-hHHHHHHHHHHHHhCCCeEEe
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARG-MKGAVQKAEEIRDKTPNSYVL 148 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~V~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~ 148 (224)
.+++.+.+|..|.-.|..=-..-=+.++++... -.+.-.++.+.+|++|..++.+-+ -..-+...+.+++..++.+|+
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 567888888877765555433333334444433 345556777889999988864211 112344556677777788888
Q ss_pred CCCCCC
Q 027405 149 QQFENP 154 (224)
Q Consensus 149 ~~~~~~ 154 (224)
-+.+..
T Consensus 149 ~hgdsS 154 (385)
T KOG2862|consen 149 THGDSS 154 (385)
T ss_pred EecCcc
Confidence 776543
No 178
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.10 E-value=29 Score=27.81 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=29.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~ 103 (224)
.+.+|++.+|..|.+++......|.+++++....
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3678999999999999999999999988876543
No 179
>PRK06194 hypothetical protein; Provisional
Probab=74.07 E-value=43 Score=27.75 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=42.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|.-|.++|......|.+++++-..... ......+...|.++..+..+ .+.++..+...+..+
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999888899987766433211 22233444457777655532 233344444444433
No 180
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=74.03 E-value=58 Score=28.12 Aligned_cols=53 Identities=28% Similarity=0.443 Sum_probs=36.6
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCC-eEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~-~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+.+.+++..+|.+ +|..|.+++..|+.+|+ +++++ .. ...+...++.+|++-+
T Consensus 173 ~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~-~~--~~~~~~~~~~~g~~~v 226 (361)
T cd08231 173 GPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVI-DG--SPERLELAREFGADAT 226 (361)
T ss_pred cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEE-cC--CHHHHHHHHHcCCCeE
Confidence 3344666677765 69999999999999999 54444 22 4556667777887543
No 181
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=73.67 E-value=39 Score=26.33 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=52.0
Q ss_pred CCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC---------CCCHHHHHHHHh
Q 027405 44 PCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA---------SMSLERRMVLLA 114 (224)
Q Consensus 44 ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~---------~~~~~~~~~~~~ 114 (224)
|+--+-++.....+.+|.+.|- ...+|.+|+|-+++-+.-+...- +++++|.-. ..+.+-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 3445567788888888888774 24566677798887766665433 888887542 245677888889
Q ss_pred CCCEEEEeC
Q 027405 115 FGAELVLTD 123 (224)
Q Consensus 115 ~Ga~V~~~~ 123 (224)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999997543
No 182
>PRK08862 short chain dehydrogenase; Provisional
Probab=73.55 E-value=30 Score=28.02 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=43.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.++.-|.++|......|.+++++-...... ...+.++..|.+++.+..+ .+.++..+..++..++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 678888888899999999999999977764432211 2234456667776554321 2334444444555444
No 183
>PRK08017 oxidoreductase; Provisional
Probab=73.54 E-value=41 Score=27.24 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=37.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|.-|.++|......|.+++++... ..+++.++..|.+.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 56888999999999999988889987665443 2344455556877777764
No 184
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=73.46 E-value=54 Score=27.55 Aligned_cols=56 Identities=29% Similarity=0.347 Sum_probs=41.1
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.+.++...+|...+|..|.+++..|+.+|.+.+++.. +..+.+.++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 55667777778778899999999999999998765432 345566666788854443
No 185
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=73.13 E-value=42 Score=26.76 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=38.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|..|.+++......|.+++++.....+ ......++..+.++..+..
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 67899999999999999988889987676654322 1223334556777776653
No 186
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=73.13 E-value=25 Score=28.91 Aligned_cols=56 Identities=30% Similarity=0.363 Sum_probs=36.8
Q ss_pred HHHHcCCCCCCCcEEEee-CCC---hHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCC
Q 027405 59 DAEEKGLIRPGESVLIEP-TSG---NTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGA 117 (224)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~-ssG---N~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga 117 (224)
.|+.-|- ..+.+|++ |.| .+.+|||.+|++-|=+.++++|+... ..-.+.|..+|.
T Consensus 34 SAlAAG~---nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGW---NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHhccc---cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 4555553 12445544 554 36899999999999999999998644 344455555554
No 187
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=73.07 E-value=31 Score=29.06 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=37.8
Q ss_pred CCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 68 ~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
++...+|...+|..|.+++..|+.+|.+++++.. ...+.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4456677777799999999999999998665543 34667777889985433
No 188
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=73.01 E-value=56 Score=27.56 Aligned_cols=56 Identities=29% Similarity=0.273 Sum_probs=39.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+.+.+.+++..+|....|..|.+++..|+.+|++.+.+.+ ...+...++.+|++-+
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQV 189 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 3455667767777777899999999999999999665543 3445555667787433
No 189
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=73.01 E-value=43 Score=26.96 Aligned_cols=70 Identities=7% Similarity=0.168 Sum_probs=43.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|.-|.++|......|.+++++...... ...++.++..|.++.....+ .+.++..+..++..+
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKA 77 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999987765543321 22344555668777654432 233444444444433
No 190
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=72.88 E-value=35 Score=29.19 Aligned_cols=53 Identities=26% Similarity=0.265 Sum_probs=38.1
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 66 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.++...+|.+ +|..|.+++..|+.+|.+.++++ +.+..+.+.++.+|++.+.
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v 211 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVV 211 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEE
Confidence 45666777755 58889999999999999855555 3356777777888885433
No 191
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=72.82 E-value=33 Score=24.80 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC-ChHHH
Q 027405 53 GYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-GMKGA 131 (224)
Q Consensus 53 a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~-~~~~~ 131 (224)
+......|.+.+. ...++-..+|++++.+|.+ +-..+.+++.|... ...++.-.+|..-+..+... +.++.
T Consensus 5 a~aa~~~A~~~~a----k~Ivv~T~sG~ta~~isk~--RP~~pIiavt~~~~--~~r~l~l~~GV~p~~~~~~~~~~~~~ 76 (117)
T PF02887_consen 5 ARAAVELAEDLNA----KAIVVFTESGRTARLISKY--RPKVPIIAVTPNES--VARQLSLYWGVYPVLIEEFDKDTEEL 76 (117)
T ss_dssp HHHHHHHHHHHTE----SEEEEE-SSSHHHHHHHHT---TSSEEEEEESSHH--HHHHGGGSTTEEEEECSSHSHSHHHH
T ss_pred HHHHHHHHHhcCC----CEEEEECCCchHHHHHHhh--CCCCeEEEEcCcHH--HHhhhhcccceEEEEeccccccHHHH
Confidence 3444455555543 2345556678887766654 33567666665542 22223345777776666543 55666
Q ss_pred HHHHHHHHHhC
Q 027405 132 VQKAEEIRDKT 142 (224)
Q Consensus 132 ~~~a~~~~~~~ 142 (224)
...+.+.+.+.
T Consensus 77 ~~~a~~~~~~~ 87 (117)
T PF02887_consen 77 IAEALEYAKER 87 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 66676666655
No 192
>PRK08303 short chain dehydrogenase; Provisional
Probab=72.73 E-value=39 Score=28.83 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=44.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC-----------CHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-----------SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEI 138 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~-----------~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~ 138 (224)
..+|++.++--|.++|..-...|.+++++..... -....+.++..|.+++.+..+ .+.++..+.+.+.
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 89 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVERI 89 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 6788888888899999888889998777654321 112234455667776554332 2445555555555
Q ss_pred HHh
Q 027405 139 RDK 141 (224)
Q Consensus 139 ~~~ 141 (224)
.++
T Consensus 90 ~~~ 92 (305)
T PRK08303 90 DRE 92 (305)
T ss_pred HHH
Confidence 544
No 193
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.68 E-value=54 Score=27.24 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=39.3
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+++..+|...+|..|.+++..|+..|.+++.+.+. ..+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 345566677777778999999999999999996555333 3455566677875443
No 194
>PRK07806 short chain dehydrogenase; Provisional
Probab=72.66 E-value=47 Score=26.74 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=42.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-H-HHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-L-ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIR 139 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~-~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~ 139 (224)
.+.+|++.+|.-|.+++......|.+++++...... . .....++..+.++..+..+ .+.++..+..+++.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 367889999999999999988889998877654321 1 1123345556666555432 23333333444443
No 195
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=72.41 E-value=33 Score=27.91 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=36.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|..|.++|......|.+++++...... ......++..|.++..+.
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 67899999999999999988899987665433211 122334555577776654
No 196
>PRK05867 short chain dehydrogenase; Provisional
Probab=72.28 E-value=36 Score=27.70 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=42.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|.-|.++|..-...|.+++++...... ....+.++..|.++..+..+ .+.++..+..++..+
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 67899999999999999988899987766433211 12233445567676554432 233344444444443
No 197
>PLN02827 Alcohol dehydrogenase-like
Probab=72.28 E-value=36 Score=29.96 Aligned_cols=57 Identities=25% Similarity=0.277 Sum_probs=40.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+.+|++.+|.+ .|.-|.+++..|+.+|.+.++.+.. ...+++.++.+|++-++
T Consensus 187 ~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 345567787766765 5889999999999999875555433 35677777889996443
No 198
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=72.27 E-value=53 Score=26.90 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHH
Q 027405 53 GYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 132 (224)
Q Consensus 53 a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~ 132 (224)
+.-+.....+-|- ...=|+.++--...++...++.+. ++.|=...-.+....++....||+.+..+.- +
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~---~--- 95 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL---N--- 95 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC---C---
Confidence 3444444445443 122355667778888888899888 5555444445788899999999999998852 2
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCc
Q 027405 133 QKAEEIRDKTPNSYVLQQFENPA 155 (224)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~~~~~~ 155 (224)
...-+.+.+. +..+++...+|.
T Consensus 96 ~ev~~~a~~~-~ip~~PG~~Tpt 117 (211)
T COG0800 96 PEVAKAANRY-GIPYIPGVATPT 117 (211)
T ss_pred HHHHHHHHhC-CCcccCCCCCHH
Confidence 2333444555 667777766554
No 199
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=72.27 E-value=33 Score=29.11 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=47.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHH--HHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE--RRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~--~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
.+.+||+.|+.-|.++|..-+..|.+++++......-. ..+.-+.+|.+|...+.+ .+.++..+...++.++
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 36799999999999999999999999999987653322 222334566766555532 2234444555555544
No 200
>PRK06197 short chain dehydrogenase; Provisional
Probab=72.24 E-value=57 Score=27.50 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
..+|++++|--|.++|..-...|.+++++...
T Consensus 18 ~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 18 VAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888888889999988888889987776554
No 201
>PRK10083 putative oxidoreductase; Provisional
Probab=72.10 E-value=35 Score=29.08 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHH-cCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+...+.++++.+|.+ .|-.|.+++..|+. +|.+.++.+.. ...+.+.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 3455667776666666 78888888888886 59887666544 46777777888986543
No 202
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=72.02 E-value=38 Score=26.43 Aligned_cols=71 Identities=21% Similarity=0.201 Sum_probs=44.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC-----CCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-----MSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~-----~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+.+|++..|..|..+|..-...+-.-++++..+ .....++.++..|++|.....+ .+.++..+...++.++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 457888889999999988777766555555444 2235678888999999877643 2334444444444443
No 203
>PRK05826 pyruvate kinase; Provisional
Probab=71.99 E-value=75 Score=29.27 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=71.4
Q ss_pred HHHHHHHcCCeEEEE-----------EcCCCCHHHHHHHHhCCCEEEEeCCC---CChH-HHHHHHHHHHHhCCCeEEe-
Q 027405 85 LAFMAAAKGYRLIIT-----------MPASMSLERRMVLLAFGAELVLTDPA---RGMK-GAVQKAEEIRDKTPNSYVL- 148 (224)
Q Consensus 85 lA~~a~~~g~~~~iv-----------vp~~~~~~~~~~~~~~Ga~V~~~~~~---~~~~-~~~~~a~~~~~~~~~~~~~- 148 (224)
+...|+..|.++++- .|..+...-+...-..|++-+...++ +.|. ++.+...+.+++-+..++.
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 455688899998874 34444444555566679997666532 2332 4444333333322111110
Q ss_pred ---CCCCCC-cchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027405 149 ---QQFENP-ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212 (224)
Q Consensus 149 ---~~~~~~-~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~ 212 (224)
...... ..........+.++.++++ +.+.||+..-+|.++--++ ...|.+.|+++.+..
T Consensus 344 ~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~is----k~RP~~pI~~~t~~~ 406 (465)
T PRK05826 344 LSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLIS----RFRPGAPIFAVTRDE 406 (465)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHH----hhCCCCCEEEEcCCH
Confidence 110011 1113445566677778773 2678999999999865544 457889999998875
No 204
>PRK05876 short chain dehydrogenase; Provisional
Probab=71.97 E-value=38 Score=28.22 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=43.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
...+|++.+|.-|.++|..-...|.+++++...... ....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999999999999988899987665433211 11233445567777655432 2334444444444443
No 205
>PRK06114 short chain dehydrogenase; Provisional
Probab=71.74 E-value=53 Score=26.72 Aligned_cols=53 Identities=13% Similarity=0.084 Sum_probs=37.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|--|.++|..-...|.++++....... ....+.++..|.++..+.
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 67889999989999999988899988877654322 223345566676665554
No 206
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=71.57 E-value=19 Score=31.63 Aligned_cols=55 Identities=33% Similarity=0.377 Sum_probs=41.3
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
..+.++...+|.+.+|..|.+++..|+.+|.+.+++. .+..+++.++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456676777777779999999999999999976553 255677788889986543
No 207
>PRK05866 short chain dehydrogenase; Provisional
Probab=71.42 E-value=42 Score=28.34 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=42.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+|.-|.++|......|.+++++...... ....+.+...|.++..+..+ .+.++..+..+++.++
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 67889999999999999988889988777554211 12223344456665544432 2333333444444433
No 208
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=71.42 E-value=42 Score=28.10 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=38.4
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
+.+.+.++...+|...+|..|.+++..|+.+|.+.+++.+.. .+.+.++.+|++
T Consensus 132 ~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~ 185 (323)
T cd05282 132 EYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGAD 185 (323)
T ss_pred HhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCC
Confidence 334456776777777788999999999999999876654433 345555667764
No 209
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=71.35 E-value=30 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=14.6
Q ss_pred CcEEEeeCCChHHHH--HHHHHHHcCCeEEE
Q 027405 70 ESVLIEPTSGNTGIG--LAFMAAAKGYRLII 98 (224)
Q Consensus 70 ~~~vv~~ssGN~~~a--lA~~a~~~g~~~~i 98 (224)
.+.+|.+-.-|..+| +|..++..|-+...
T Consensus 7 K~~lI~Gvan~rSIAwGIAk~l~~~GAeL~f 37 (259)
T COG0623 7 KRILIMGVANNRSIAWGIAKALAEQGAELAF 37 (259)
T ss_pred ceEEEEEecccccHHHHHHHHHHHcCCEEEE
Confidence 366777666665444 33334444444433
No 210
>PRK07791 short chain dehydrogenase; Provisional
Probab=71.27 E-value=45 Score=27.98 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=44.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC---------C-CHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS---------M-SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEI 138 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~---------~-~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~ 138 (224)
...+|++.++.-|.++|......|.+++++.... . .....+.++..|.++..+..+ .+.++..+..++.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 3678889888899999998888999877764322 1 112234455567776655432 2344555555555
Q ss_pred HHh
Q 027405 139 RDK 141 (224)
Q Consensus 139 ~~~ 141 (224)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 544
No 211
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=71.20 E-value=58 Score=28.32 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=39.7
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
...+.+++..+|. .+|..|.+++..|+.+|.+.++.+.. ...|.+.++.+|++.++.
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVIN 237 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 4456667666666 46899999999999999975554443 356667777788864443
No 212
>PRK06128 oxidoreductase; Provisional
Probab=71.15 E-value=56 Score=27.54 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=44.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC---CHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|--|.++|..-...|.++++...... .....+.++..|.++..+..+ .+.++..+...+..+
T Consensus 57 ~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 57 KALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 6899999999999999998889999877653321 122344556678777665432 233344444444443
No 213
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=71.12 E-value=46 Score=26.67 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=37.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|.+++......|.+++++...... ......++..+.++..+.
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 67889999999999999988889987776554221 223344555676665554
No 214
>PRK14030 glutamate dehydrogenase; Provisional
Probab=71.05 E-value=33 Score=31.40 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEE
Q 027405 49 KDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIIT 99 (224)
Q Consensus 49 K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~iv 99 (224)
=-|+..+.+..+.+...+....++++.-..||-|..+|.....+|.+++.+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav 257 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTI 257 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 346777777776654433444477888889999999999999999999994
No 215
>PRK06841 short chain dehydrogenase; Provisional
Probab=71.04 E-value=44 Score=27.08 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=26.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+.+|++.+|--|.++|......|.+++++...
T Consensus 17 ~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 17 VAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888999999999999988899987766543
No 216
>PRK12939 short chain dehydrogenase; Provisional
Probab=71.03 E-value=40 Score=27.07 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=36.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
...+|++.+|.-|.++|......|.+++++...... ......++..+.++..+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 367889999999999999988899987776332211 122334455566665554
No 217
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.86 E-value=50 Score=26.72 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=43.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|.-|.++|..-...|.+++++.....+ ......++..+.++..+..+ .+.++..+..+++.+
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQA 76 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56889999999999999888889988777544322 22334445566666655432 233344444444443
No 218
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=70.86 E-value=26 Score=26.92 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=35.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+|+.|..++......|.+++++++...+... ..+.+++..+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceee
Confidence 678899999999999999999999999987543333 4555555554
No 219
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=70.43 E-value=51 Score=28.95 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=38.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
..++..++|..|..++..+...+-.-.|++|..+-......++..|++++.++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4567778888877666554333333567778776677777888899999998753
No 220
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=70.39 E-value=67 Score=27.32 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=37.1
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
..+.++...+|. ..|..|.+++..|+.+|+..++++ .....+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345566666776 478999999999999998434444 22356666777789864
No 221
>PRK07904 short chain dehydrogenase; Provisional
Probab=70.33 E-value=54 Score=26.92 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=40.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHc-CCeEEEEEcCCCC--HHHHHHHHhCCC-EEE--EeCCCCChHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMS--LERRMVLLAFGA-ELV--LTDPARGMKGAVQKAEEIR 139 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~-g~~~~ivvp~~~~--~~~~~~~~~~Ga-~V~--~~~~~~~~~~~~~~a~~~~ 139 (224)
...+|++.+|-.|.++|...... |.+++++...... ....+.++..|. ++. .++- .+.++..+..++..
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~-~~~~~~~~~~~~~~ 83 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDA-LDTDSHPKVIDAAF 83 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecC-CChHHHHHHHHHHH
Confidence 46788888898999999887777 4888887654332 122344555553 444 4443 23344444444443
No 222
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=70.26 E-value=47 Score=26.91 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=39.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHH-HhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|..|.++|......|.+++++.... .+++.+ ...+.++..+..+ .+.++..+..+++.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQ---ERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHH
Confidence 358889999999999999999999877764432 222222 2345555544321 233343344444433
No 223
>PRK07035 short chain dehydrogenase; Provisional
Probab=70.04 E-value=47 Score=26.87 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=42.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|.-|.+++......|.+++++...... ....+.+...|.++..+..+ .+.++.....++..+
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998899987777543211 12233444556665544322 233444444444444
No 224
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=69.98 E-value=46 Score=27.02 Aligned_cols=71 Identities=18% Similarity=0.069 Sum_probs=42.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+|.-|.++|......|.+++++...... ......++..+.++..+..+ .+.++..+...++.++
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999988899887775433211 11233444456666554432 2334444444444433
No 225
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.81 E-value=42 Score=26.97 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=37.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
.+.+|++.+|.-|.++|......|.+++++...... ....+.++..|+++..+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 367888999999999999988899987665443211 2233445556877765543
No 226
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=69.66 E-value=64 Score=26.82 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=38.6
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCe-EEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYR-LIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+...+.++...+|.+ +|..|.+++..|+.+|++ .+++ ..+ ..+...++.+|++-+.
T Consensus 123 ~~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~-~~~--~~~~~~~~~~g~~~~~ 179 (312)
T cd08269 123 RRGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAI-DRR--PARLALARELGATEVV 179 (312)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE-CCC--HHHHHHHHHhCCceEe
Confidence 355566776777775 688999999999999998 5443 332 4555666778875333
No 227
>PRK10490 sensor protein KdpD; Provisional
Probab=69.50 E-value=92 Score=31.12 Aligned_cols=108 Identities=10% Similarity=0.061 Sum_probs=64.3
Q ss_pred CcEEEeeCCChHHHHH----HHHHHHcCCeEEEEEcCC-----CCH-------HHHHHHHhCCCEEEEeCCCCChHHHHH
Q 027405 70 ESVLIEPTSGNTGIGL----AFMAAAKGYRLIITMPAS-----MSL-------ERRMVLLAFGAELVLTDPARGMKGAVQ 133 (224)
Q Consensus 70 ~~~vv~~ssGN~~~al----A~~a~~~g~~~~ivvp~~-----~~~-------~~~~~~~~~Ga~V~~~~~~~~~~~~~~ 133 (224)
.+.+|+-+++.++..+ +..|.+++-+.+++.-++ .+. ..++..+.+||+++.+.+. +.. +
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~-dva---~ 326 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP-AEE---K 326 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CHH---H
Confidence 4568888877776544 445666787777664321 111 2244667899999888763 333 2
Q ss_pred HHHHHHHhCC-CeEEeCCCCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccC
Q 027405 134 KAEEIRDKTP-NSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIG 184 (224)
Q Consensus 134 ~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG 184 (224)
...+++++.+ ..+.+.+..... | ...+++...+++.. +++|..|+|..
T Consensus 327 ~i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 327 AVLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 3334555542 345666554432 2 22357888888887 57888888644
No 228
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.46 E-value=47 Score=26.61 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=37.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
..+|++.+|..|.+++......|.+++++...... ......++..+.+++.+..
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATA 63 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEEC
Confidence 57889999999999999888899987776544321 1223344556777765543
No 229
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=69.34 E-value=61 Score=27.14 Aligned_cols=55 Identities=24% Similarity=0.409 Sum_probs=38.7
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+...+.++...+|...+|..|.+++..|+.+|++.+++.+. ..+.+.++.+|++-
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 190 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGG---PAKTALVRALGADV 190 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCCE
Confidence 44556677677777778999999999999999986554322 33445556677743
No 230
>PRK06172 short chain dehydrogenase; Provisional
Probab=69.24 E-value=43 Score=27.16 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=37.7
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
.+.+|++.+|.-|.++|......|.+++++...... ......++..+.++..+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 367899999999999999988899987776543322 222445566777766554
No 231
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=69.02 E-value=43 Score=29.36 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=33.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.|+..+++..+..++..+....-+-.|+++.-+-..-...++.+|++++.++.
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 36666666777765555544332224566665555556677889999999874
No 232
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=68.92 E-value=37 Score=28.31 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=61.4
Q ss_pred HHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC-------CCCChHHHHHHHHHHHHhCCCeEEeCCCC----C
Q 027405 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-------PARGMKGAVQKAEEIRDKTPNSYVLQQFE----N 153 (224)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~ 153 (224)
++.+-+++|-++.++ .-+.-..+++.+ +|.+=..+- ++..+. .|.---++.++.|+++-.. |
T Consensus 23 ig~aLA~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~----QALIkDKr~~nL~lLPAsQtrdKd 95 (272)
T COG2894 23 IGTALAQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLN----QALIKDKRLENLFLLPASQTRDKD 95 (272)
T ss_pred HHHHHHHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccchh----hHhhccccCCceEecccccccCcc
Confidence 333334567776664 556667777766 566643332 212222 2211112223455554332 2
Q ss_pred CcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhc--CCCcEEEEEeCCCCcc
Q 027405 154 PANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEH--NPEIKLYGVEPVESAV 215 (224)
Q Consensus 154 ~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~--~~~~~vigve~~~~~~ 215 (224)
... .++...+-.|+.+ ..+|||+|=+ -+||-.+|+.. .-+--+|.+.|+-|..
T Consensus 96 alt-~E~v~~vv~eL~~---~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvSsV 150 (272)
T COG2894 96 ALT-PEGVKKVVNELKA---MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVSSV 150 (272)
T ss_pred cCC-HHHHHHHHHHHHh---cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCcccc
Confidence 222 3455555555544 4699999865 56777777743 3456677778877643
No 233
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.84 E-value=60 Score=26.13 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=38.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--HHHHHHHhCCCEEEEeCC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~~ 124 (224)
.+.+|++.+|.-|.+++..-...|.+++++...+... ...+.++..|.++..+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3678999999999999999888999887754433222 223455667887766554
No 234
>PRK07832 short chain dehydrogenase; Provisional
Probab=68.77 E-value=65 Score=26.54 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=24.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
+.+|++.+|.-|.++|......|.+++++..
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4688899999999999988888988666543
No 235
>PRK06138 short chain dehydrogenase; Provisional
Probab=68.72 E-value=53 Score=26.44 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=41.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|--|.++|..-...|.+++++...... ......+. .+.++..+..+ .+.++..+..++..+
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999888889887766543211 12222333 46666555432 233444444444444
No 236
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=68.71 E-value=49 Score=28.07 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=35.5
Q ss_pred cEEEe-eCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~-~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
..++. ..+|..|.++...|+.+|.+.+++.+ +..+++.++.+|++-+...
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 44554 67788999988899999997554432 3567777778898765544
No 237
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=68.61 E-value=49 Score=26.66 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=43.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCCCC-ChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPAR-GMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~~-~~~~~~~~a~~~~~ 140 (224)
..+|++.+|--|.++|......|.+++++...... ....+.++..|.++..+..+- +.++..+..++..+
T Consensus 8 ~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 8 VAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999888889988765433211 122344556777887665432 23333333444433
No 238
>PLN02527 aspartate carbamoyltransferase
Probab=68.59 E-value=72 Score=27.59 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHc-CCeEEEEEcCCC--CHHHHHHHHhCCCEEEEeC
Q 027405 79 GNTGIGLAFMAAAK-GYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 79 GN~~~alA~~a~~~-g~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+++.++..+ |++++++.|+.. +....+.++..|.++..++
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46899999998877 999999999863 4444555556677776654
No 239
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.52 E-value=60 Score=26.04 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=27.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+.+|++.+|..|.+++......|.+++++...
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999999999999988899997776544
No 240
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=68.39 E-value=35 Score=31.09 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHc-CCeEEEEEcCCC--CHHHHHHHHhCCCEEEEeC
Q 027405 79 GNTGIGLAFMAAAK-GYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 79 GN~~~alA~~a~~~-g~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+++..++.+ |++++++.|+.. +...++.++..|+.|..++
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 69999999996665 999999999864 4444555556677776654
No 241
>PRK06483 dihydromonapterin reductase; Provisional
Probab=68.04 E-value=61 Score=25.94 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=43.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|--|.++|......|.+++++-.... ...+.++..|++.+.++-. +.++..+..++..+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 70 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQ 70 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHh
Confidence 5688999999999999988888998887654332 2234455567777776642 33444444444443
No 242
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=67.99 E-value=30 Score=30.41 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=33.7
Q ss_pred ChHHHHHHHH-HHHcCCeEEEEEcCCC--CHHHHHHHHhCCCEEEEeC
Q 027405 79 GNTGIGLAFM-AAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 79 GN~~~alA~~-a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+++.. ++.+|++++++.|+.. +...++.++..|+++..+.
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 6889999976 6677999999999863 4555555666777776654
No 243
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=67.82 E-value=69 Score=26.51 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=39.7
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+...+.++...+|...+|..|.+++..++..|.+.+++... ..+.+.++.+|++.+
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGADIA 188 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCcEE
Confidence 45567777777888878999999999999999987665432 333444566776443
No 244
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=67.58 E-value=17 Score=34.08 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=39.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC------------------CCHHHHHHHHhCCCEEEEe
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS------------------MSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~------------------~~~~~~~~~~~~Ga~V~~~ 122 (224)
+.|+...+|..|++.|..++.+|.++++|-... ....+++.++.+|+++..-
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 567888999999999999999999987764221 1234567788899987653
No 245
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.48 E-value=55 Score=27.79 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=38.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~ 124 (224)
...+|++.+|.-|.++|..-...|.++++.-..... ....+.++..|.+++.+..
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 367899999999999999888889987765432221 2234556667888876654
No 246
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=67.48 E-value=53 Score=26.15 Aligned_cols=53 Identities=23% Similarity=0.214 Sum_probs=37.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|..|..++......|.+++++....... .....++..|.++..+.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 678999999999999999888899976655443222 22344556777776654
No 247
>PRK06181 short chain dehydrogenase; Provisional
Probab=67.43 E-value=47 Score=27.10 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=42.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|.-|.+++......|.+++++...... ....+.++..|.++..+..+ .+.++.....++..+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56889999999999999888899987777644211 12233445567776555432 233333333444433
No 248
>PRK08643 acetoin reductase; Validated
Probab=67.40 E-value=56 Score=26.49 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=36.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~~ 124 (224)
..+|++.+|.-|.++|......|.+++++....... .....+...+.++..+..
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKA 58 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 568899999999999999888999877765432222 122334455677765543
No 249
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.38 E-value=44 Score=28.60 Aligned_cols=51 Identities=31% Similarity=0.368 Sum_probs=36.8
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 67 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.++...+|.+ .|..|.+++..|+.+|.+.++++ ..+..|....+.+|++-+
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCccee
Confidence 4566777765 58999999999999998644555 335577777778888543
No 250
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=67.37 E-value=49 Score=27.53 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=37.7
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
+.+.++...+|.+.+|..|.+++..|+..|++.+++.+. .+.+.++.+|++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 345567677777778999999999999999987666532 455566777764
No 251
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=67.25 E-value=43 Score=28.33 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=38.4
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+...+.++...+|. ..|..|.+++..|+.+|++.+++.+.. .+++.++.+|++-
T Consensus 161 ~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCcE
Confidence 45556677676665 578899999999999998876654443 4566667788753
No 252
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.14 E-value=54 Score=26.44 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=37.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|..|.++|..-...|.+++++....... .....++..+.++..+..
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 678999999999999998888899988876543322 223344556777655543
No 253
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=67.11 E-value=35 Score=30.52 Aligned_cols=91 Identities=8% Similarity=-0.058 Sum_probs=40.0
Q ss_pred cCCeEEEEEcCCCCHHHHHHHHhCCCE-EEEeCCCCChHH--HHHHHHHHHHhCCCeE-EeCCC-CCCcchHhHHHhHHH
Q 027405 92 KGYRLIITMPASMSLERRMVLLAFGAE-LVLTDPARGMKG--AVQKAEEIRDKTPNSY-VLQQF-ENPANPKIHYETTGP 166 (224)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~-V~~~~~~~~~~~--~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~g~~t~a~ 166 (224)
+-.+..++...+.-...-+.++.+|.+ +..+.. ..... ..+...+..++.+-.+ ..+.. .||.. ....-+.
T Consensus 24 f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~-~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~---~~v~~~~ 99 (395)
T PRK15454 24 FSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMAD-SFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCI---TDVCAAV 99 (395)
T ss_pred eecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcC-cchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCH---HHHHHHH
Confidence 344555555554333333455666744 333432 12221 1233333334331122 12211 24432 2233344
Q ss_pred HHHHhhCCCCCEEEEccCchhHH
Q 027405 167 EIWKGTGGKIDALVSGIGTGGTV 189 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvG~Gg~~ 189 (224)
+++++. ++| +|+++|+|+.+
T Consensus 100 ~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 100 AQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHhc--CcC-EEEEeCChHHH
Confidence 555554 466 66788888765
No 254
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.02 E-value=42 Score=27.44 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=24.7
Q ss_pred cEEEeeCC--ChHHHHHHHHHHHcCCeEEEEEc
Q 027405 71 SVLIEPTS--GNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~ss--GN~~~alA~~a~~~g~~~~ivvp 101 (224)
..+|++.+ +.-|.++|......|.++++...
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 56777776 68999999998889999777643
No 255
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=66.98 E-value=54 Score=27.93 Aligned_cols=55 Identities=27% Similarity=0.244 Sum_probs=36.6
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
....+.+++..+|. .+|..|.++...|+.+|...++.+. .+..+.+.++.+|++-
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~~--~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAVD--SNPERLDLAKEAGATD 215 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEe--CCHHHHHHHHHhCCcE
Confidence 34556677677775 4588899999999999974444442 2356666667777643
No 256
>PRK12744 short chain dehydrogenase; Provisional
Probab=66.96 E-value=52 Score=26.79 Aligned_cols=70 Identities=23% Similarity=0.133 Sum_probs=42.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC-CH----HHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SL----ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~-~~----~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|.-|.++|..-...|.+++++..... .. ...+.++..+.++..+..+ .+.++..+...+..+
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 6788898999999999988888999776653221 11 2233445567776655432 233444444444443
No 257
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=66.94 E-value=38 Score=34.08 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=28.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
.+.|+...+|..|++.|+..++.|++++||=.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 36788899999999999999999999999943
No 258
>PRK09134 short chain dehydrogenase; Provisional
Probab=66.57 E-value=69 Score=26.05 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=36.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--HHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|..++......|.+++++...+... .-...++..|.++..+.
T Consensus 11 ~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 11 AALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 678999999999999999999999887765443221 12233444577776554
No 259
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=66.38 E-value=62 Score=28.93 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=71.7
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 40 EMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 40 E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
...++ |. +.+-..-.+++- .|. +..+..+||-.++.+|+.|-..|=.-.|++|.-+.....+.+-..||+.
T Consensus 28 g~i~~-G~-~v~~FE~~~ae~--~G~-----k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~P 98 (374)
T COG0399 28 GWLTG-GP-FVRRFEQAFAEY--LGV-----KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKP 98 (374)
T ss_pred CCeec-Ch-HHHHHHHHHHHH--hCC-----CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeE
Confidence 33434 44 555555444332 333 5678889999988888885556666788899988888888999999999
Q ss_pred EEeCCCCC-hH-HHHHHHHHHHHh-CCCeEEeCCCCCCcchHhHHHhHH
Q 027405 120 VLTDPARG-MK-GAVQKAEEIRDK-TPNSYVLQQFENPANPKIHYETTG 165 (224)
Q Consensus 120 ~~~~~~~~-~~-~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~g~~t~a 165 (224)
++++.+.+ +. +. +..++.-.+ -...+.++-++++.. +.....++
T Consensus 99 VFvDid~~T~nid~-~~ie~aIt~~tKAIipVhl~G~~~d-m~~i~~la 145 (374)
T COG0399 99 VFVDIDPDTLNIDP-DLIEAAITPRTKAIIPVHLAGQPCD-MDAIMALA 145 (374)
T ss_pred EEEecCCcccCCCH-HHHHHHcccCCeEEEEehhccCCCC-HHHHHHHH
Confidence 99986422 21 11 122222222 234556677777776 54444333
No 260
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=66.23 E-value=42 Score=29.01 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=39.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC--CHHHHHH-HHhCCCEEEEeC
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV-LLAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~-~~~~Ga~V~~~~ 123 (224)
+.|.+. |.+..+.+-.+|.+++++..++.+|++++++-|+.. +...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 345543 223333344579999999999999999999999863 2233332 455777776654
No 261
>PLN02342 ornithine carbamoyltransferase
Probab=66.22 E-value=38 Score=29.89 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=39.8
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC--CHHHHHHHHhCCC-EEEEeC
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGA-ELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga-~V~~~~ 123 (224)
+.|.+. |.+..+.+-..|.+.+++.+++.+|++++++.|+.. +...++.++.+|. ++..+.
T Consensus 188 ~~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 345543 323333344468999999999999999999999863 3444555555664 665544
No 262
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=66.22 E-value=91 Score=27.26 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=42.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHh-CCCEEEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~V~~~~~ 124 (224)
+++....|.-|+..+..++.+|...+++++ ..+.|++..+. .|++++....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d--~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVD--RSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHhCCCeEeecCc
Confidence 688889999999999999999999999884 45788888876 7788776664
No 263
>PRK07326 short chain dehydrogenase; Provisional
Probab=66.19 E-value=66 Score=25.63 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=26.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
..+|++.+|..|.+++......|.+++++..
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 6788999999999999998888999777654
No 264
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=66.12 E-value=74 Score=26.18 Aligned_cols=56 Identities=32% Similarity=0.440 Sum_probs=39.6
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+.+.++...+|...+|..|.+++..++.+|.+.+++.. +..+.+.++.+|++-+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCCEEE
Confidence 355667767777777899999999999999998655532 34455566667774433
No 265
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.10 E-value=74 Score=27.26 Aligned_cols=71 Identities=24% Similarity=0.280 Sum_probs=47.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHH-HHHHhCCC-E-EEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR-MVLLAFGA-E-LVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~-~~~~~~Ga-~-V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+||+.|+--|.++|+.-...|.+.++++...-...++ +.++..++ + |+....+ .+.+++.+...+..++
T Consensus 14 vVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 14 VVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred EEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 678888888889999999999999999998876555555 55554443 4 4444321 2445565555444444
No 266
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=66.04 E-value=82 Score=27.39 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=38.6
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
+...+.++...+|. ..|..|.+++..|+.+|.+.++.+.. +..+++.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34556777677776 57999999999999999875555433 45566666778874
No 267
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.95 E-value=69 Score=25.76 Aligned_cols=54 Identities=33% Similarity=0.548 Sum_probs=37.0
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
..+.++.+.+|.+.++ .|.+++..++..|.+.+++.+. ..+.+.++.+|++...
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 183 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADHVI 183 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCceec
Confidence 3345666777777666 9999999999999776666443 3455566677765443
No 268
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=65.83 E-value=47 Score=31.72 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=41.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC--------------C----HHHHHHHHhCCCEEEEeC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--------------S----LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~V~~~~ 123 (224)
.+.|+...+|..|++.|+..+++|.++++|-.... + ...++.++.+|.+++.-.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 35688899999999999999999999998854321 1 124667788999886543
No 269
>PRK08278 short chain dehydrogenase; Provisional
Probab=65.82 E-value=76 Score=26.25 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=37.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--------HHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--------~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|--|.++|......|.+++++....... ...+.++..|.+++.+.
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 8 TLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 678899999999999999989999988876543211 11234556777766554
No 270
>PRK07814 short chain dehydrogenase; Provisional
Probab=65.80 E-value=53 Score=26.93 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=35.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
.+.+|++++|--|.++|......|.+++++...... ....+.++..|.++..+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 367899999999999999888899988776543211 122233444465655443
No 271
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=65.77 E-value=54 Score=26.59 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=42.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
.+.+|++.+|.-|.++|......|.+++++...... ......++..|.++..+..+ .+.++..+..++..+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 367889999999999999888889987777554211 12233445567655544422 233333334444433
No 272
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=65.75 E-value=85 Score=27.47 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=38.7
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
+.+.+.++...+|. ..|..|.+++..|+.+|..-++++.. ...+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 44566777666666 57899999999999999954444433 35667777888884
No 273
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=65.63 E-value=54 Score=26.34 Aligned_cols=70 Identities=9% Similarity=-0.005 Sum_probs=42.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEeCCCC-ChHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDPAR-GMKGAVQKAEEIR 139 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~~~~-~~~~~~~~a~~~~ 139 (224)
.+.+|++.+|.-|.++|..-...|.+++++....... .....++..+.++..+..+- +.++..+..+++.
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 3678999999999999999888899887765443211 12233445566666555422 3333333344443
No 274
>PRK07890 short chain dehydrogenase; Provisional
Probab=65.62 E-value=53 Score=26.61 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=36.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
.+.+|++.+|.-|.++|......|.+++++...... ......++..|.++..+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 367899999999999999999999987776543211 122233444566665444
No 275
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=65.30 E-value=1.1e+02 Score=27.91 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=47.2
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHH----HHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEE
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRM----VLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV 147 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~----~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (224)
..+..+||-.|+.++..+- ++-.-.|++|...-..... .+..+|+++.+++...+.++ .++..+++...+|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~----l~~~I~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADE----IVALANDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHH----HHHhCCcCCeEEE
Confidence 3566888888888887654 3333456666654332222 26789999999986322222 2222233346777
Q ss_pred eCCCCCCc
Q 027405 148 LQQFENPA 155 (224)
Q Consensus 148 ~~~~~~~~ 155 (224)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 77777776
No 276
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=65.25 E-value=74 Score=25.92 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=44.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
...+|++.+|.-|.++|......|.+++++...+.+ ....+.++..|.++..+..+ .+.++..+..++..+
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 367899999999999999988999988776554322 22234455567776554321 233333333444443
No 277
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=65.17 E-value=53 Score=29.10 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCCh--HHHHHHHHHHHHhCC-CeEEeCCC-CCCcchHhHHHhHHHHHHH
Q 027405 95 RLIITMPASMSLERRMVLLAFGAELVLTDPARGM--KGAVQKAEEIRDKTP-NSYVLQQF-ENPANPKIHYETTGPEIWK 170 (224)
Q Consensus 95 ~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~--~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~a~Ei~~ 170 (224)
+..++..++.-...-+.++.+|-++..+.....+ ....+...+..++.+ .+...+.. .||.. . ...-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~--~-~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT--T-TVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH--H-HHHHHHHHHH
Confidence 4445555544333334455567677665542221 223344444434331 22222222 23332 1 1222234444
Q ss_pred hhCCCCCEEEEccCchhHH
Q 027405 171 GTGGKIDALVSGIGTGGTV 189 (224)
Q Consensus 171 q~~~~~d~iv~pvG~Gg~~ 189 (224)
+. ++| +|+++|+|+.+
T Consensus 81 ~~--~~D-~IiavGGGS~i 96 (380)
T cd08185 81 EE--GCD-FVVGLGGGSSM 96 (380)
T ss_pred Hc--CCC-EEEEeCCccHH
Confidence 43 466 56778877754
No 278
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.17 E-value=83 Score=26.42 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC----CCcEEEEEeCC
Q 027405 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN----PEIKLYGVEPV 211 (224)
Q Consensus 164 ~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~----~~~~vigve~~ 211 (224)
...+++++. +++|+|++. +...+.|+..++++.+ .++.|+|.+-.
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 445566554 468988864 5566679999999876 36889998754
No 279
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=64.96 E-value=68 Score=28.36 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=35.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
..++..++|..++.++..+-..+=.-.|++|..+-......+...|++++.++.+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4566677777766655544322223456677766666667777889999998854
No 280
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=64.94 E-value=62 Score=26.45 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=40.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHH-HhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
...+|++.+|.-|.++|......|.+++++.... .+.+.+ +.++.++..+..+ .+.++..+..++..++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSA---EKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999888999876654322 222222 3345444443321 2344444444554443
No 281
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=64.87 E-value=87 Score=26.59 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEee-CCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCC-CEEEEeC
Q 027405 51 RIGYSMIADAEEKGLIRPGESVLIEP-TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG-AELVLTD 123 (224)
Q Consensus 51 R~a~~~l~~a~~~g~~~~g~~~vv~~-ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~G-a~V~~~~ 123 (224)
++....++++.+.|. ..++.+ --=.+...+-.+|+.+|+..+.+++.+++..+++.+.... +-|+.+.
T Consensus 109 ~Gie~F~~~~~~~Gv-----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 109 YGIEKFLRRAKEAGV-----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred hhHHHHHHHHHHcCC-----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 455667777777775 333332 2233555677788888888888888888888877776665 6666665
No 282
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=64.69 E-value=80 Score=26.08 Aligned_cols=54 Identities=30% Similarity=0.356 Sum_probs=38.5
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+.+.++...+|...+|..|.+++..++.+|.+.++..+. ..+.+.+..+|++-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 193 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAV 193 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 456667677787778999999999999999886655442 344555566776543
No 283
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=64.63 E-value=91 Score=29.07 Aligned_cols=90 Identities=21% Similarity=0.122 Sum_probs=69.1
Q ss_pred eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHH
Q 027405 34 RIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL 113 (224)
Q Consensus 34 ~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~ 113 (224)
.+-++.|....|+|-=.-.+..+.+-.+..| +++|++.-+.++...+=.-..++|++.|+-.+-+=|.-...+....++
T Consensus 68 a~Vf~~eg~R~Tf~~~~~ev~slAaGll~lG-L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~ 146 (596)
T KOG1177|consen 68 AAVFDHEGIRLTFSEFVSEVESLAAGLLSLG-LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLK 146 (596)
T ss_pred EEEEeeccchhhHHHHHHHHHHHHhhHHhhc-CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHh
Confidence 5677888887777644445666666666666 577878777777777777788999999998877777766777788889
Q ss_pred hCCCEEEEeCC
Q 027405 114 AFGAELVLTDP 124 (224)
Q Consensus 114 ~~Ga~V~~~~~ 124 (224)
..|.++.+.++
T Consensus 147 k~~~k~l~~p~ 157 (596)
T KOG1177|consen 147 KVGCKALFAPP 157 (596)
T ss_pred hcCeEEEEccc
Confidence 99999999886
No 284
>PHA02542 41 41 helicase; Provisional
Probab=64.55 E-value=1.2e+02 Score=28.01 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=64.4
Q ss_pred CCCCCCCcEEEee--CCChHHHHH--HHHHHHcCCeEEEEEcCCCCHHHHHHH--HhCCCEEEEeCCCCChHHHHHHHHH
Q 027405 64 GLIRPGESVLIEP--TSGNTGIGL--AFMAAAKGYRLIITMPASMSLERRMVL--LAFGAELVLTDPARGMKGAVQKAEE 137 (224)
Q Consensus 64 g~~~~g~~~vv~~--ssGN~~~al--A~~a~~~g~~~~ivvp~~~~~~~~~~~--~~~Ga~V~~~~~~~~~~~~~~~a~~ 137 (224)
|.+.+|...++.+ +.|=+..++ |..+...|.++.+|.-+-.......++ ...+.....+.. -+.++-.+..+.
T Consensus 185 gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~-l~~~~~~~~~~~ 263 (473)
T PHA02542 185 GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANLLDVSLDDIDD-LSKAEYKAKMEK 263 (473)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCCHHHHhh-cCHHHHHHHHHH
Confidence 4567776767765 346555554 444445677776664333222222222 222222211111 111111122222
Q ss_pred HHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHhhCCCCCEEEEc----c--C----chh----HHHHHHHHHHhcCC--
Q 027405 138 IRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG----I--G----TGG----TVTGAGKYLKEHNP-- 201 (224)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~p----v--G----~Gg----~~~Gi~~~~k~~~~-- 201 (224)
+..-..+.+|+..++.+..-..........+..+-+..+|.||+= + + .+. -++-|++.||.+..
T Consensus 264 ~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel 343 (473)
T PHA02542 264 LRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEH 343 (473)
T ss_pred HHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 222122446555444333324455566666665432236665542 1 1 111 14567788876543
Q ss_pred CcEEEEE
Q 027405 202 EIKLYGV 208 (224)
Q Consensus 202 ~~~vigv 208 (224)
++.||++
T Consensus 344 ~vpVi~l 350 (473)
T PHA02542 344 DVVVWTA 350 (473)
T ss_pred CCeEEEE
Confidence 4666653
No 285
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=64.46 E-value=79 Score=27.86 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=34.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.+..++|..|..++..+-.++-.-.|++|...-......+...|++++.++.
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 4556777777666665442222345667776555556677889999999874
No 286
>PRK07550 hypothetical protein; Provisional
Probab=64.38 E-value=99 Score=27.06 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=42.7
Q ss_pred CCChhhHHHHHHHHHHHHcC-CCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 45 CSSVKDRIGYSMIADAEEKG-LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 45 tGS~K~R~a~~~l~~a~~~g-~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.|.-..|.+..-.... ..| .+.+ ..|+..++++.+..++..+- .+-.-.|+++.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~-~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSR-LYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 4666666443322111 122 1233 34666666677766655443 34445567776444444556688999999887
Q ss_pred C
Q 027405 124 P 124 (224)
Q Consensus 124 ~ 124 (224)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 287
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=64.35 E-value=51 Score=28.25 Aligned_cols=50 Identities=30% Similarity=0.357 Sum_probs=37.0
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 67 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.+++..+|.+.+|..|.+++..|+.+|++.+.+. + ..+.+.++.+|++-+
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~--~--~~~~~~~~~~g~~~v 202 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA--S--PKNFDLVKSLGADAV 202 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE--C--cccHHHHHhcCCCEE
Confidence 4666777777789999999999999999876654 2 256666677887433
No 288
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=64.22 E-value=1.7e+02 Score=29.95 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=38.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC--------------CH----HHHHHHHhCCCEEEE
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--------------SL----ERRMVLLAFGAELVL 121 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~--------------~~----~~~~~~~~~Ga~V~~ 121 (224)
+.|+.-.+|..|++.|+..++.|++++||-.... +. ..++.++.+|.+++.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 4688899999999999999999999999854321 11 224566778888765
No 289
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=64.12 E-value=47 Score=27.13 Aligned_cols=53 Identities=17% Similarity=0.016 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 027405 51 RIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (224)
Q Consensus 51 R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~ 103 (224)
++..+.+..+.+.-.......+++.-..||-|..+|......|.+.+.+...+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 46666666655432222334678888999999999999999999888887654
No 290
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=63.93 E-value=52 Score=28.39 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=39.2
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC--CHHHHHH----HHhCCCEEEEeC
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~----~~~~Ga~V~~~~ 123 (224)
..|.+. |.+..+.+-.+|.+.+++.+++.+|++++++.|+.. +....+. .+..|+++...+
T Consensus 142 ~~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 142 HFGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HhCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 345443 323333333478999999999999999999999863 2333332 245788777665
No 291
>PRK06949 short chain dehydrogenase; Provisional
Probab=63.69 E-value=53 Score=26.57 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=27.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
.+.+|++.+|.-|.++|......|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367889999999999999999899987776543
No 292
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=63.59 E-value=21 Score=32.87 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.7
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 76 PTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 76 ~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
.|||-+|.++|.++..+|-+++++...
T Consensus 279 ~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 279 RSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred CCchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 589999999999999999999999743
No 293
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=63.57 E-value=18 Score=28.57 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=31.5
Q ss_pred HHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEe
Q 027405 161 YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (224)
Q Consensus 161 ~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve 209 (224)
...++.+|.++ +-.||.|+.=.|=|. ..++|+.+|++++++--
T Consensus 53 v~~a~~~L~~~-Gf~PDvI~~H~GWGe-----~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 53 VARAARQLRAQ-GFVPDVIIAHPGWGE-----TLFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHHc-CCCCCEEEEcCCcch-----hhhHHHhCCCCcEEEEE
Confidence 34555666666 457998877776665 45889999999999853
No 294
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=63.49 E-value=77 Score=25.73 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=27.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
..+|++++|--|.++|..-...|.+++++...
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 67899999999999999988899987776443
No 295
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=63.48 E-value=92 Score=26.38 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=39.0
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHH-cCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
+...+.+++..+|.+ .|..|.+++..|+. +|.+.+++.+ +..+++.++.+|++.+..
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 444567777777777 68899999889997 4987655533 334566667788755433
No 296
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=63.47 E-value=58 Score=29.89 Aligned_cols=52 Identities=10% Similarity=-0.088 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 50 DRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
-+++.+.+..+.+.-......++++...+||-|..+|.....+|.+++.+..
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4577777777665433222336788888899999999999999999886654
No 297
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=63.40 E-value=53 Score=27.70 Aligned_cols=39 Identities=33% Similarity=0.427 Sum_probs=30.9
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITM 100 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivv 100 (224)
+...+.+++..+|...+|..|.+++..|+.+|.+++++.
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~ 194 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS 194 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 335567777777777779999999999999999876653
No 298
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=63.37 E-value=76 Score=25.35 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=35.7
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~ 124 (224)
+|++.+|.-|.++|......|.+++++...... ....+.++..+.++..+..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEc
Confidence 688888999999999998899997766543322 2223445556777765553
No 299
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=63.35 E-value=35 Score=30.12 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=34.9
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 67 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.++++.+|.+ .|..|.+++..|+.+|.+.+++.+. +..+.+.++.+|++.+.
T Consensus 177 ~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKRLGVNG-LGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCEEEEEc-ccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 3565656654 5899999999999999985554332 23345566778886443
No 300
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=63.28 E-value=39 Score=30.59 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+...+| ++++....|+-|+.+|..++.+|.+++++ .. .+.+....+.+|++++
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~-d~--d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT-EV--DPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE-EC--ChhhHHHHHhcCCEEc
Confidence 333455 56788899999999999999999975553 22 3555666677888654
No 301
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=63.21 E-value=94 Score=26.39 Aligned_cols=53 Identities=28% Similarity=0.463 Sum_probs=37.4
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
+...+.++...+|. .+|..|.+++..|+.+|++++++.. +..+...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 44556777666666 4678899999999999999766533 25555666777764
No 302
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=63.07 E-value=54 Score=27.94 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=34.4
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 69 g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+.+.+|...+|..|.+++..|+.+|++++++... .+.+.++.+|.+-
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~ 209 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADD 209 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCce
Confidence 6677777778999999999999999986665432 2455666677643
No 303
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=63.06 E-value=91 Score=26.20 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=36.9
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHh-CCCEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAEL 119 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~V 119 (224)
+.+.++...+|...+|..|.+++..|+.+|.+.+++.+ ...+...++. +|++-
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~ 194 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDA 194 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCce
Confidence 44566666677777899999999999999997655533 2345555555 77743
No 304
>PLN02702 L-idonate 5-dehydrogenase
Probab=63.00 E-value=57 Score=28.27 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=41.3
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+...+.++...+|. ..|..|.++...|+.+|.+.++.+.. ...+.+.++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 44456667666666 46889999999999999986665544 36777777888987554
No 305
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=62.93 E-value=51 Score=27.77 Aligned_cols=52 Identities=10% Similarity=-0.105 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 50 DRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
-|+..+.+..+.+.-.......+++.-..||-|..+|.....+|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3567777777665433333346788899999999999999999999987755
No 306
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=62.86 E-value=93 Score=26.20 Aligned_cols=55 Identities=29% Similarity=0.384 Sum_probs=39.3
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.+.+.++...+|.+.+|..|.+++..|+.+|.+.+++.. +..+...++.+|++-+
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 188 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRP 188 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceE
Confidence 345667777788888899999999999999998666543 2344455566776433
No 307
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=62.71 E-value=38 Score=30.76 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=40.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC---C--CHHHHHHHHhCCCEEEEe
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS---M--SLERRMVLLAFGAELVLT 122 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~---~--~~~~~~~~~~~Ga~V~~~ 122 (224)
+.+|...+||.|.-+|..+.++|.+++++.... . ....++.++..|.+++.-
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 468888999999999999999999999987653 1 233445677788888653
No 308
>PRK05872 short chain dehydrogenase; Provisional
Probab=62.65 E-value=68 Score=27.01 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=41.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHH-HHhC--CCEEEE--eCCCCChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMV-LLAF--GAELVL--TDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~-~~~~--Ga~V~~--~~~~~~~~~~~~~a~~~~~~ 141 (224)
...+|++.+|.-|.++|......|.+++++-... .+++. .+.+ +.+++. ++- .+.++..+..++..++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~---~~l~~~~~~l~~~~~~~~~~~Dv-~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEE---AELAALAAELGGDDRVLTVVADV-TDLAAMQAAAEEAVER 82 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHHhcCCCcEEEEEecC-CCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999876654322 22222 2223 455655 443 2344444445555443
No 309
>PRK06500 short chain dehydrogenase; Provisional
Probab=62.56 E-value=79 Score=25.32 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=35.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.+.+|++.+|.-|.+++......|.+++++.... .......+.+|.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDP--ASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH--HHHHHHHHHhCCceEEEE
Confidence 3678999999999999999888999876653321 111222344577765443
No 310
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=62.53 E-value=72 Score=25.92 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=35.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|.-|.++|......|.+++++...... ......++..+.++..+..
T Consensus 14 ~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 14 TALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67889999999999998888889987665443211 1122334556777766553
No 311
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.40 E-value=99 Score=26.46 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=33.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
..+..-..|..|.+++..++.+|.+++++-+. ..++...+.+|++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 34555567899999999999999877666333 334556677887754
No 312
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=62.33 E-value=56 Score=26.28 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=42.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|.-|.++|..-.+.|.++++....+.. ......++..+.+++.+..+ .+.++..+..+++.+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQS 76 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHH
Confidence 56888999999999999988889987765543322 12334456667776655432 223333344444433
No 313
>PRK05693 short chain dehydrogenase; Provisional
Probab=62.12 E-value=89 Score=25.72 Aligned_cols=66 Identities=30% Similarity=0.229 Sum_probs=43.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|-.|.++|......|.+++++... ..+.+.+...+.+.+.++-. +.++..+...+..+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 46888999999999999988899988776543 23444455567776666642 33444444444433
No 314
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=62.05 E-value=96 Score=26.43 Aligned_cols=52 Identities=25% Similarity=0.391 Sum_probs=36.8
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
...+.++.+.+|.+ .|..|.+++..|+.+|++.+++... ..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCCC
Confidence 44456666777777 7899999999999999987665333 4455555667873
No 315
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=62.01 E-value=98 Score=27.28 Aligned_cols=81 Identities=9% Similarity=-0.010 Sum_probs=44.2
Q ss_pred CCCCCCChhhHHHHHHHHHHHHcCC--CCCCCcEEEeeCCChHHHHHHHHHHH-cCCeEEEEEcCCCCHHHHHHHHhCCC
Q 027405 41 MMEPCSSVKDRIGYSMIADAEEKGL--IRPGESVLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGA 117 (224)
Q Consensus 41 ~~~ptGS~K~R~a~~~l~~a~~~g~--~~~g~~~vv~~ssGN~~~alA~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga 117 (224)
+..+.|....|-+..-. ..+.+. +.+++..++..+++..|..++..+-. ..-.-.|+++.-.-..-...++.+|+
T Consensus 65 Y~~~~G~~~lR~aia~~--~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~ 142 (396)
T PRK09257 65 YLPIEGLAAYRQAVQEL--LFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGL 142 (396)
T ss_pred cCCCCCCHHHHHHHHHH--hcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCC
Confidence 33446777777544432 222321 23331123666677777777753322 12223455565444555667788999
Q ss_pred EEEEeC
Q 027405 118 ELVLTD 123 (224)
Q Consensus 118 ~V~~~~ 123 (224)
+++.++
T Consensus 143 ~~v~v~ 148 (396)
T PRK09257 143 EVKTYP 148 (396)
T ss_pred cEEEEe
Confidence 999886
No 316
>PRK05717 oxidoreductase; Validated
Probab=61.98 E-value=85 Score=25.47 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=41.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
.+.+|++.+|.-|.++|..-...|.+++++-... ....+..+..+.+++.+..+ .+.++..+..+++.++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999888898877763322 11122234456555544432 2233333334444443
No 317
>PRK08265 short chain dehydrogenase; Provisional
Probab=61.95 E-value=81 Score=25.80 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=40.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
...+|++.+|--|.++|......|.+++++-... ....+..+..+.++..+..+ .+.++..+..++..+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 3678899999999999999888999877764332 11122233446666554432 233333344444433
No 318
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=61.73 E-value=77 Score=26.56 Aligned_cols=52 Identities=29% Similarity=0.459 Sum_probs=37.7
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
..+.++.+.+|...+|..|.+++..++.+|.+++++... ..+.+.++.+|.+
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCc
Confidence 456677777888888999999999999999998776532 2334444555653
No 319
>PRK08177 short chain dehydrogenase; Provisional
Probab=61.71 E-value=80 Score=25.09 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=39.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 138 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~ 138 (224)
..+|++.+|.-|.++|..-...|.+++++.........++.+ -+..+..++- .+.++..+..+++
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~D~-~d~~~~~~~~~~~ 67 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL--PGVHIEKLDM-NDPASLDQLLQRL 67 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc--cccceEEcCC-CCHHHHHHHHHHh
Confidence 468899999999999998888899887775543333222221 2344444443 2334444444444
No 320
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=61.61 E-value=24 Score=25.52 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=32.9
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027405 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~ 212 (224)
..+.++.+++ +...||+..-+|.+. ..+....|.+.|+++.+..
T Consensus 6 ~aa~~~A~~~--~ak~Ivv~T~sG~ta----~~isk~RP~~pIiavt~~~ 49 (117)
T PF02887_consen 6 RAAVELAEDL--NAKAIVVFTESGRTA----RLISKYRPKVPIIAVTPNE 49 (117)
T ss_dssp HHHHHHHHHH--TESEEEEE-SSSHHH----HHHHHT-TSSEEEEEESSH
T ss_pred HHHHHHHHhc--CCCEEEEECCCchHH----HHHHhhCCCCeEEEEcCcH
Confidence 3456788888 378999999999985 4455568999999999875
No 321
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=61.59 E-value=79 Score=26.74 Aligned_cols=50 Identities=28% Similarity=0.325 Sum_probs=35.8
Q ss_pred CCcEEEeeCCChHHHHHHHHHHHc-CCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 69 GESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 69 g~~~vv~~ssGN~~~alA~~a~~~-g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+...+|.+.+|..|.+++..|+.+ |++++++... ..+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 667777777899999999999988 9887666433 3455566677875443
No 322
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=61.58 E-value=91 Score=29.24 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHcC-CeEEEEEcCCC--CHHHHHHHHhCCCEEEEeC
Q 027405 79 GNTGIGLAFMAAAKG-YRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 79 GN~~~alA~~a~~~g-~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
+|.+.+++..+..+| ++++++.|+.. +...++.++..|+.+..+.
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 799999999999998 99999999864 4555566666888887654
No 323
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=61.52 E-value=66 Score=27.33 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=40.3
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC-CHHHHHHHHhCCCEEEEe
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLT 122 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~V~~~ 122 (224)
+.+.++...+|...+|..|.+++..|+.+|.++++...... ...+.+.++.+|++-+..
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 34566666666666799999999999999999777765331 124555556678764443
No 324
>PRK09072 short chain dehydrogenase; Provisional
Probab=61.51 E-value=69 Score=26.16 Aligned_cols=33 Identities=36% Similarity=0.434 Sum_probs=27.6
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
...+|++.+|-.|.+++......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 367889999999999999988899987777543
No 325
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=61.49 E-value=56 Score=23.24 Aligned_cols=94 Identities=23% Similarity=0.193 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC--CCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhH
Q 027405 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP--ARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 160 (224)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (224)
..+|.+.+..|+++.++=.......-.+.++....+++.++. ..++....+.++..++..++...+-.+..
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~------- 90 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH------- 90 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS-------
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc-------
Confidence 345666777799888763433335556677788888887754 23455666666665555555443322111
Q ss_pred HHhHHHH-HHHhhCCCCCEEEEccCc
Q 027405 161 YETTGPE-IWKGTGGKIDALVSGIGT 185 (224)
Q Consensus 161 ~~t~a~E-i~~q~~~~~d~iv~pvG~ 185 (224)
.+..+| +++.. ..+|+++..=|-
T Consensus 91 -~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 91 -ATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp -SGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred -hhcChHHHhccC-cCcceecCCChH
Confidence 133333 34432 257888776553
No 326
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=61.46 E-value=51 Score=28.78 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=15.3
Q ss_pred CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeC
Q 027405 175 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEP 210 (224)
Q Consensus 175 ~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~ 210 (224)
++| +|+++|+|+.+ =+++++... ..+++|.|-+
T Consensus 77 ~~d-~IIavGGGs~~-D~aK~ia~~-~~~p~i~VPT 109 (349)
T cd08550 77 EAD-VIIGVGGGKTL-DTAKAVADR-LDKPIVIVPT 109 (349)
T ss_pred CCC-EEEEecCcHHH-HHHHHHHHH-cCCCEEEeCC
Confidence 345 55666665533 344433321 1245555544
No 327
>PRK06720 hypothetical protein; Provisional
Probab=61.41 E-value=75 Score=24.67 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=41.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHH-HHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER-RMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~-~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.++--|.++|......|.+++++-........ .+.+...|.++..+..+ .+.++..+...+..++
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 66888888889999999888889887666433211111 23444557665444321 2344444444444433
No 328
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=61.39 E-value=99 Score=27.49 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=34.7
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCC--eEEEEEcCCCCHHHHHHHHhC
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY--RLIITMPASMSLERRMVLLAF 115 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~--~~~ivvp~~~~~~~~~~~~~~ 115 (224)
+..+.+|++.+|...+|..|...+..|+.+|. ..++++ +....|++.++.+
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~ 222 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRL 222 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHh
Confidence 34567776777777789999998888999876 223333 2346667776665
No 329
>PRK08264 short chain dehydrogenase; Validated
Probab=61.35 E-value=48 Score=26.49 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=26.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCC-eEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~-~~~ivvp~ 102 (224)
..+|++.+|.-|.++|......|. +++++...
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 678999999999999999999998 76666543
No 330
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.22 E-value=65 Score=25.90 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=37.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|--|.+++......|.++++....... ......++..|.++..+.
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 67888999999999999888899987776543321 233445566777765544
No 331
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=61.14 E-value=78 Score=26.58 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=36.9
Q ss_pred CCCCC-cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 66 IRPGE-SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 66 ~~~g~-~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+.++. +.+|...+|..|.+++..|+.+|.+.+++... ..+++.++.+|++-
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~ 193 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASE 193 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcE
Confidence 56676 67777778999999999999999986655433 23445556778743
No 332
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=61.13 E-value=72 Score=27.86 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=39.5
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
+...+.++...+| ...|..|.+++..|+.+|.+.++++.. ...+.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~~--~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVDH--VPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCeE
Confidence 4445667767677 456899999999999999854444433 467778888899854
No 333
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.09 E-value=88 Score=25.37 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=44.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+|--|.++|..-...|.+++++.... ....+.++..+...+.++-. +.++..+..++..++
T Consensus 9 ~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 9 VALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 678899999999999998888999877664433 23344444446666666652 444444444554443
No 334
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=61.09 E-value=78 Score=28.30 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=70.7
Q ss_pred CChhhHHHHHHHHHHH----HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 46 SSVKDRIGYSMIADAE----EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 46 GS~K~R~a~~~l~~a~----~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
|.+..-.+.+.+...+ +.|..-. .+++..-..||-|..+|..++.+|++++++-|..... +..+
T Consensus 89 g~na~aVAE~~~~~lL~l~r~~g~~L~-gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~~-- 156 (378)
T PRK15438 89 GCNAIAVVEYVFSSLLMLAERDGFSLH-DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDEG-- 156 (378)
T ss_pred CcCchHHHHHHHHHHHHHhccCCCCcC-CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------cccc--
Confidence 5455555655554332 2332222 3567778889999999999999999998885432110 1000
Q ss_pred eCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHH--HHHHHHHHh
Q 027405 122 TDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV--TGAGKYLKE 198 (224)
Q Consensus 122 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--~Gi~~~~k~ 198 (224)
.+. ...++.++. +.+.++---++.-...-+.-+..+.++++ +++.|++-+|-|+.+ ..+..+++.
T Consensus 157 -----~~~----~L~ell~~s-DiI~lh~PLt~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 157 -----DFR----SLDELVQEA-DILTFHTPLFKDGPYKTLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred -----ccC----CHHHHHhhC-CEEEEeCCCCCCcccccccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 011 122333443 55554322122100011234556778887 468899999988875 455556554
No 335
>PRK05650 short chain dehydrogenase; Provisional
Probab=61.09 E-value=89 Score=25.64 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=42.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|.-|.+++..-...|.+++++...... ......++..|.++..+..+ .+.++..+...++.+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 35788999999999999888889998776544322 22233455567776555432 233333344444433
No 336
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=60.92 E-value=65 Score=28.36 Aligned_cols=10 Identities=60% Similarity=0.916 Sum_probs=5.1
Q ss_pred EEEccCchhH
Q 027405 179 LVSGIGTGGT 188 (224)
Q Consensus 179 iv~pvG~Gg~ 188 (224)
+|+++|+|+.
T Consensus 87 ~IIavGGGsv 96 (366)
T PRK09423 87 VVIGIGGGKT 96 (366)
T ss_pred EEEEecChHH
Confidence 4455555543
No 337
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=60.86 E-value=1.1e+02 Score=26.25 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=35.9
Q ss_pred CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 67 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.++...+|. .+|..|.+++..|+.+|.+.++++.. ...++..++.+|++.+.
T Consensus 174 ~~~~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 225 (350)
T cd08240 174 VADEPVVII-GAGGLGLMALALLKALGPANIIVVDI--DEAKLEAAKAAGADVVV 225 (350)
T ss_pred CCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCcEEe
Confidence 345455555 57999999999999999965555432 35666777778875443
No 338
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=60.83 E-value=63 Score=28.42 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=34.4
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEEcCCC--CHHHHHHH----HhCCCEEEEeC
Q 027405 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVL----LAFGAELVLTD 123 (224)
Q Consensus 74 v~~ssGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~----~~~Ga~V~~~~ 123 (224)
+.+-..|.+.+++..++.+|++++++.|+.. +...+..+ +..|+++....
T Consensus 159 ~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 159 FVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 3333468999999999999999999999853 33333333 23577776554
No 339
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=60.82 E-value=76 Score=29.39 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC--
Q 027405 48 VKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-- 125 (224)
Q Consensus 48 ~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-- 125 (224)
.++..+...+..|.+.+. ...++-..+|.+++.++.+ +...+.+++.+......+ +.-.+|..-+.++..
T Consensus 359 ~~~aia~sAv~~A~~l~a----kaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~~~~~r~--l~l~~GV~p~~~~~~~~ 430 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA----KAIVVLTTSGRTARLVSKY--RPNAPIIAVTRNEQTARQ--LHLYRGVYPVLFEEPKP 430 (480)
T ss_pred hHHHHHHHHHHHHHhcCC----CEEEEECCCcHHHHHHHhh--CCCCCEEEEcCCHHHhhh--eeeccCcEEEEeccccc
Confidence 445555555555555443 1233334557776655444 345666666555322222 223456666555432
Q ss_pred ---CChHHHHHHHHHHHHh
Q 027405 126 ---RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 126 ---~~~~~~~~~a~~~~~~ 141 (224)
.+.++..+.+.+.+++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 431 GWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 2344445555555444
No 340
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=60.66 E-value=87 Score=25.23 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=36.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|.-|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL 56 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46888999999999999988899987666443211 1223445666777765543
No 341
>PRK07677 short chain dehydrogenase; Provisional
Probab=60.62 E-value=78 Score=25.64 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=41.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|.-|.++|......|.+++++....... .....++..+.+++.+..+ .+.++..+...+..+
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 568899999999999999888999776664332111 2223344456666554432 233334444444433
No 342
>PRK06202 hypothetical protein; Provisional
Probab=60.48 E-value=14 Score=30.20 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=29.4
Q ss_pred CCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027405 176 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212 (224)
Q Consensus 176 ~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~ 212 (224)
...+=+++|+|....-++..++..+++.+++|+++..
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~ 98 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP 98 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 3566788999988777777777778888999999965
No 343
>PRK05854 short chain dehydrogenase; Provisional
Probab=60.30 E-value=82 Score=26.85 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=41.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHh-C-CCEEEE--eCCCCChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLA-F-GAELVL--TDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~-~-Ga~V~~--~~~~~~~~~~~~~a~~~~~~ 141 (224)
..+|++.++--|.++|..-...|.+++++....... ..++.+.. . +.++.. ++- .+.++..+.++++.++
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl-~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDL-SSLASVAALGEQLRAE 90 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecC-CCHHHHHHHHHHHHHh
Confidence 678888888888888888888898877765432211 11222322 2 345544 443 3455666666666554
No 344
>PRK06953 short chain dehydrogenase; Provisional
Probab=60.30 E-value=85 Score=24.90 Aligned_cols=51 Identities=31% Similarity=0.323 Sum_probs=36.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|.-|.++|..-...|.+++++... ..+.+.++..+.+.+.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecC
Confidence 46888999999999998877889987776543 2334445556777666664
No 345
>PLN02253 xanthoxin dehydrogenase
Probab=60.28 E-value=70 Score=26.42 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=26.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
..+|++.+|.-|.++|......|.+++++-.
T Consensus 20 ~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 20 VALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 6789999999999999998889998877643
No 346
>PRK09291 short chain dehydrogenase; Provisional
Probab=60.20 E-value=43 Score=27.14 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=35.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHH-HHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER-RMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~-~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|.+++......|.+++++......... .+.....+.++..+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEK 57 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEE
Confidence 57899999999999999999999998887654322111 222344555554443
No 347
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=60.11 E-value=48 Score=28.93 Aligned_cols=13 Identities=54% Similarity=0.777 Sum_probs=7.1
Q ss_pred CCCEEEEccCchhH
Q 027405 175 KIDALVSGIGTGGT 188 (224)
Q Consensus 175 ~~d~iv~pvG~Gg~ 188 (224)
++| +|+++|+|+.
T Consensus 77 ~~D-~IIavGGGS~ 89 (351)
T cd08170 77 GAD-VVIGIGGGKT 89 (351)
T ss_pred CCC-EEEEecCchh
Confidence 344 4566666554
No 348
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=60.03 E-value=70 Score=27.88 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=35.4
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+|++.+| ...|.-|.+++..|+.+|.+.+++.... ..+.+..+.+|++.+.
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 33456666666 5568999999999999999865543322 2233444567875443
No 349
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=59.97 E-value=59 Score=32.95 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=28.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
+.|+...+|..|.+.|+...+.|.++++|=.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 5688899999999999999999999999954
No 350
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=59.76 E-value=36 Score=27.56 Aligned_cols=60 Identities=23% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCCcchHhHHHhHHHHHH----HhhC------CCCCEEEEccC-chhHHHH----HHHHHHhcCCCcEEEE--EeCC
Q 027405 152 ENPANPKIHYETTGPEIW----KGTG------GKIDALVSGIG-TGGTVTG----AGKYLKEHNPEIKLYG--VEPV 211 (224)
Q Consensus 152 ~~~~~~~~g~~t~a~Ei~----~q~~------~~~d~iv~pvG-~Gg~~~G----i~~~~k~~~~~~~vig--ve~~ 211 (224)
+.-.+|..|+.+.+.++. +++. ..+|.|++..| +|||=+| ++..+++.+|+..++. |-|.
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~ 166 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPF 166 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-C
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccccc
Confidence 344456778776544332 2221 35777777655 3444444 4455677777765555 4444
No 351
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=59.50 E-value=77 Score=27.36 Aligned_cols=82 Identities=16% Similarity=0.070 Sum_probs=42.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHH-HhCCCeEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIR-DKTPNSYVLQQ 150 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 150 (224)
.|+..+++..+..++..+- .+-.-.|+++.-.-..-....+.+|++++.++.+.++.--.+..++.. +.....+++..
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 4565666666665554432 222234555654444556677889999999875332210112222222 22336677754
Q ss_pred CCCC
Q 027405 151 FENP 154 (224)
Q Consensus 151 ~~~~ 154 (224)
..||
T Consensus 162 p~NP 165 (356)
T PRK04870 162 PNNP 165 (356)
T ss_pred CCCC
Confidence 4555
No 352
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=59.20 E-value=1.2e+02 Score=26.16 Aligned_cols=12 Identities=42% Similarity=0.745 Sum_probs=5.8
Q ss_pred CCEEEEccCchhH
Q 027405 176 IDALVSGIGTGGT 188 (224)
Q Consensus 176 ~d~iv~pvG~Gg~ 188 (224)
+| +|+++|+|+.
T Consensus 79 ~d-~IIaiGGGs~ 90 (332)
T cd07766 79 VD-AVIAVGGGST 90 (332)
T ss_pred cC-EEEEeCCchH
Confidence 44 3455555543
No 353
>PRK06348 aspartate aminotransferase; Provisional
Probab=59.13 E-value=1.2e+02 Score=26.47 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=43.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC--CCChHHHHHHHHHHHHhCCCeEEeC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP--ARGMKGAVQKAEEIRDKTPNSYVLQ 149 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~ 149 (224)
.++..+++.++..++..+-. +-.-.|+++.-.-..-...++..|++++.++. ..++.--.+..++..++....+++.
T Consensus 91 ~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~ 169 (384)
T PRK06348 91 EIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILN 169 (384)
T ss_pred hEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEe
Confidence 46767777777766655442 22234555654444455566778999988763 1222111122222223333566765
Q ss_pred CCCCCc
Q 027405 150 QFENPA 155 (224)
Q Consensus 150 ~~~~~~ 155 (224)
...||-
T Consensus 170 ~p~NPt 175 (384)
T PRK06348 170 SPNNPT 175 (384)
T ss_pred CCCCCC
Confidence 444543
No 354
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=59.07 E-value=84 Score=25.66 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=40.5
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHH-HhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
...+|++.+|.-|.++|......|.+++++-. + ..+++.+ ..++.++..+..+ .+.++..+..++..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r-~--~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDK-S--AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeC-C--HHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 36788999999999999999899998777633 2 2233333 2345555544322 233333344444443
No 355
>PRK06101 short chain dehydrogenase; Provisional
Probab=58.94 E-value=94 Score=25.01 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=39.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCC--CEEEEeCCCCChHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG--AELVLTDPARGMKGAVQKAEE 137 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~G--a~V~~~~~~~~~~~~~~~a~~ 137 (224)
..+|++.+|.-|.++|..-...|.+++++... ..+++.+...+ ..++.++- .+.++..+..++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~ 67 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDV-TDHPGTKAALSQ 67 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeC-CCHHHHHHHHHh
Confidence 56889999999999998888889997776443 33444443333 34444554 234444444444
No 356
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=58.94 E-value=56 Score=28.32 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=27.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS 105 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~ 105 (224)
+..+.+-.+|.+.+++.++..+|++++++.|+..+
T Consensus 155 ~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 155 QLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 33334455899999999999999999999998754
No 357
>PRK06482 short chain dehydrogenase; Provisional
Probab=58.91 E-value=81 Score=25.93 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=27.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+.+|++.+|.-|.++|..-...|.+++++...
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56899999999999999888889988877654
No 358
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=58.88 E-value=1.2e+02 Score=26.99 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=9.8
Q ss_pred CCCEEEEccCchhHH
Q 027405 175 KIDALVSGIGTGGTV 189 (224)
Q Consensus 175 ~~d~iv~pvG~Gg~~ 189 (224)
++| +|+++|+|+.+
T Consensus 79 ~~D-~IIaiGGGS~i 92 (386)
T cd08191 79 GPD-VIIGLGGGSCI 92 (386)
T ss_pred CCC-EEEEeCCchHH
Confidence 566 57788887754
No 359
>PRK06701 short chain dehydrogenase; Provisional
Probab=58.87 E-value=1.1e+02 Score=25.71 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=37.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.++|......|.+++++...... ......++..|.++..+.
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 67889999999999999988899998777554322 223344566677776554
No 360
>PLN00175 aminotransferase family protein; Provisional
Probab=58.80 E-value=1.3e+02 Score=26.74 Aligned_cols=83 Identities=8% Similarity=0.024 Sum_probs=42.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHhCCCeEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKTPNSYVLQQ 150 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
.|+..+++..+..++..+- ++-.-.|++++-.-..-...++.+|++++.++.. .++.--.+..++........++++.
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~ 195 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINT 195 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecC
Confidence 3555666677766665543 3322344445433344556678899999988642 1221111222222222335667665
Q ss_pred CCCCc
Q 027405 151 FENPA 155 (224)
Q Consensus 151 ~~~~~ 155 (224)
.+||-
T Consensus 196 p~NPt 200 (413)
T PLN00175 196 PHNPT 200 (413)
T ss_pred CCCCC
Confidence 55554
No 361
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=58.77 E-value=1.2e+02 Score=27.49 Aligned_cols=53 Identities=19% Similarity=0.070 Sum_probs=36.8
Q ss_pred EEEeeCCChHHHHHHHHHHH------cCC--eEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAA------KGY--RLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~------~g~--~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.++..++|..+..+|+.+.. .++ .-.|++|..+-......+...|++++.++.
T Consensus 80 ~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 80 YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 46677778888777776541 133 345777776666667777889999998875
No 362
>CHL00194 ycf39 Ycf39; Provisional
Probab=58.74 E-value=45 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=27.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+.+|++.+|..|..++......|.++++++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 46889999999999999988889999888754
No 363
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=58.72 E-value=78 Score=25.42 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=36.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHH-HHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER-RMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~-~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|-.|.+++..-...|.+++++........+ ...++..+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 57889999999999999888889987777554322222 223344566766554
No 364
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=58.63 E-value=86 Score=25.44 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=42.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~ 140 (224)
+.+|++.+|.-|.+++......|.+++++....... .....++..|.++..+..+ .+.++..+..+++.+
T Consensus 13 ~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 13 CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 678899999999999998888899887765432211 1223345567666544332 233333344444433
No 365
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.58 E-value=91 Score=24.73 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=37.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--HHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|..|.+++......|.+++++....... .....++..+.++..+..
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQA 63 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 678999999999999999888999887766554322 122334455666655543
No 366
>PRK06180 short chain dehydrogenase; Provisional
Probab=58.34 E-value=94 Score=25.68 Aligned_cols=32 Identities=34% Similarity=0.322 Sum_probs=27.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
..+|++.+|.-|.+++......|.+++++...
T Consensus 6 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 6 TWLITGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred EEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 67899999999999999988899997776543
No 367
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=58.27 E-value=94 Score=25.99 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=34.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
...+|.+.+|..|.+++..|+.+|.+++++.+ +..+++.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 35666777799999999999999999544433 3456666677887543
No 368
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=58.09 E-value=1.1e+02 Score=27.28 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=46.4
Q ss_pred CeEEEEEcCCCCHHHHHHHHhCCCE-E-EEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHh
Q 027405 94 YRLIITMPASMSLERRMVLLAFGAE-L-VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 171 (224)
Q Consensus 94 ~~~~ivvp~~~~~~~~~~~~~~Ga~-V-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q 171 (224)
++..++...+.-....+.+..+|.+ + +.+++.-.-....+.+.+..++.+-.+.+...-.| +|......-+.|.+++
T Consensus 6 ~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p-~P~~~~v~~~~~~~~~ 84 (377)
T COG1454 6 LPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEP-EPTIETVEAGAEVARE 84 (377)
T ss_pred cCceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCC-CCCHHHHHHHHHHHHh
Confidence 3455555565555555666666633 3 33333100011223333333333212333222111 2233445566777777
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHH
Q 027405 172 TGGKIDALVSGIGTGGTVTGAGKYLK 197 (224)
Q Consensus 172 ~~~~~d~iv~pvG~Gg~~~Gi~~~~k 197 (224)
. .+|. |+++|+|+.+ -++++..
T Consensus 85 ~--~~D~-iIalGGGS~~-D~AK~i~ 106 (377)
T COG1454 85 F--GPDT-IIALGGGSVI-DAAKAIA 106 (377)
T ss_pred c--CCCE-EEEeCCccHH-HHHHHHH
Confidence 6 5774 5678887754 4455443
No 369
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=58.06 E-value=1e+02 Score=25.03 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=26.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+.+|++.+|.-|.++|..-...|.+++++-..
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 57899999999999999988889988776543
No 370
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.91 E-value=95 Score=24.73 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=35.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--HHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~~ 124 (224)
+.+|++.+|.-|..+|......|.+++++...+... .....+...+.++..+..
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA 62 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 678889999999999998888899877763433221 222334445666655543
No 371
>PRK07063 short chain dehydrogenase; Provisional
Probab=57.89 E-value=1e+02 Score=25.05 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=40.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHh--CCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLA--FGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~--~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+|--|.++|..-...|.+++++...... ......++. .+.++..+..+ .+.++..+..++..++
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 67888988999999999888889987776443211 112223333 45565544322 2334444444444443
No 372
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.86 E-value=1.1e+02 Score=25.41 Aligned_cols=70 Identities=21% Similarity=0.213 Sum_probs=39.7
Q ss_pred cEEEeeCCC--hHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHH-HhCCCEE-EEeCCCCChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSG--NTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAEL-VLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssG--N~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~V-~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
..+|++.++ .-|.++|......|.+++++-.......+++.+ +..|..+ +.++- .+.++..+..++..++
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKK 82 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHH
Confidence 678887775 688888888888999887764322112223333 3345432 33443 2444444555555443
No 373
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=57.83 E-value=1.1e+02 Score=25.31 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhC---CCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchH
Q 027405 82 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF---GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPK 158 (224)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~---Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (224)
|.+.|.+.+.+|+++.++-++......+..+..+ |.+|.....+.. .....+++.++.-....+..|.+-....
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~~ 162 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPPPL 162 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCCCc
Confidence 3567888889999988875555666777777666 678877665322 1233344544432445555665433211
Q ss_pred hHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC----CcEEEEEeCC
Q 027405 159 IHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP----EIKLYGVEPV 211 (224)
Q Consensus 159 ~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~----~~~vigve~~ 211 (224)
. ..+ -.++. + ...+|+|++.. +.++-.+...+...++ +.+++.+-|.
T Consensus 163 ~-~~~-~~~~~-~-~~~~d~v~ftS--~~~v~~~~~~~~~~~~~~~~~~~v~~IG~~ 213 (248)
T COG1587 163 D-EAT-LIELL-K-LGEVDAVVFTS--SSAVRALLALAPESGIEFLERKRVASIGPR 213 (248)
T ss_pred c-HHH-HHHHH-H-hCCCCEEEEeC--HHHHHHHHHHccccchhHhhCceEEEecHH
Confidence 1 111 11112 2 24689988876 4455566666665554 3666666554
No 374
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=57.46 E-value=1.1e+02 Score=25.12 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=39.0
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
+.+.+.++...++...+|..|.+++..++.+|++.+++.+. ..+.+.++.+|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 45667777777777778899999999999999986655333 3455555667764
No 375
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=57.41 E-value=1.3e+02 Score=26.06 Aligned_cols=54 Identities=26% Similarity=0.376 Sum_probs=36.5
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
+...+.+++..+|. ..|..|.+++..|+.+|.+.++++.. ...+.+.++.+|++
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 34456677677777 56899999999999999874444332 34455555677874
No 376
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=57.27 E-value=1.7e+02 Score=27.49 Aligned_cols=59 Identities=22% Similarity=0.165 Sum_probs=49.4
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 66 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
+++++...+.+...-+-..++++|-..|....-+=|.....+...+++.-.+++++++.
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~ 127 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDE 127 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcC
Confidence 45566666666677777888889999999988888888888889999999999999996
No 377
>PRK07774 short chain dehydrogenase; Provisional
Probab=57.24 E-value=1e+02 Score=24.78 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=34.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEe
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLT 122 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~ 122 (224)
+.+|++.+|--|.+++......|.+++++....... ...+.++..+.++..+
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAV 60 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 678999999999999999888999987775442221 1223334445555443
No 378
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.19 E-value=1.1e+02 Score=25.14 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=39.7
Q ss_pred cEEEeeCC--ChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHH-HhC-CCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAF-GAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ss--GN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~-Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+ +.-|.++|..-...|.++++.-.......+++.+ +.. |.+++.+..+ .+.++..+..++..++
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 56777765 6889999998888999877754322222333333 222 4555444321 2344444455555444
No 379
>PRK08862 short chain dehydrogenase; Provisional
Probab=57.16 E-value=1e+02 Score=24.87 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=47.5
Q ss_pred eEEEEEcCCC--CHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHHhHHHHHHHhh
Q 027405 95 RLIITMPASM--SLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 172 (224)
Q Consensus 95 ~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~ 172 (224)
+.+++...+. -..-.+.+...|++|+.+..+ -+...+..+++.+....... .+.|.. . ......+..++.+++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~--~~~l~~~~~~i~~~~~~~~~-~~~D~~-~-~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQD--QSALKDTYEQCSALTDNVYS-FQLKDF-S-QESIRHLFDAIEQQF 80 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCCeEE-EEccCC-C-HHHHHHHHHHHHHHh
Confidence 3445444332 234555667789999998763 23333333444332222222 222222 2 344556667888888
Q ss_pred CCCCCEEEEccCc
Q 027405 173 GGKIDALVSGIGT 185 (224)
Q Consensus 173 ~~~~d~iv~pvG~ 185 (224)
+..+|.+|..+|.
T Consensus 81 g~~iD~li~nag~ 93 (227)
T PRK08862 81 NRAPDVLVNNWTS 93 (227)
T ss_pred CCCCCEEEECCcc
Confidence 4479999999874
No 380
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=57.13 E-value=1e+02 Score=26.01 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=37.3
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+..+.++...+|. ..|..|.+++..|+.+|++++++.+. ..+++.++.+|++-+.
T Consensus 157 ~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 157 DAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITRS---PDKRELARKLGADEVV 211 (330)
T ss_pred hhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhCCcEEe
Confidence 3456666666676 45669999999999999986665433 3455566667775443
No 381
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=57.08 E-value=1.1e+02 Score=25.04 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=42.9
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--HHHHHHH-hCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLL-AFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~-~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
...+|++.++.-|.++|..-...|.+++++...+... ...+.++ ..|.++..+..+ .+.++..+...+..++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3678889999999999999888999977764433211 1122222 346666554432 2344444555555444
No 382
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=57.03 E-value=68 Score=28.40 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=40.7
Q ss_pred CeEEEEEcCCCCHHHHHHHHhCCC-EEEEeCCCCChH-HHHHHHHHHHHhCC-CeEEeCCC-CCCcchHhHHHhHHHHHH
Q 027405 94 YRLIITMPASMSLERRMVLLAFGA-ELVLTDPARGMK-GAVQKAEEIRDKTP-NSYVLQQF-ENPANPKIHYETTGPEIW 169 (224)
Q Consensus 94 ~~~~ivvp~~~~~~~~~~~~~~Ga-~V~~~~~~~~~~-~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~a~Ei~ 169 (224)
++..++...+.-...-+.++.+|. ++..+....-.. ...+...+..++.+ .+...+.. .||.. . ...++.
T Consensus 5 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~--~----~v~~~~ 78 (377)
T cd08176 5 LPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI--T----NVKDGL 78 (377)
T ss_pred CCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH--H----HHHHHH
Confidence 455666665544444455666774 565554321112 23444444444432 22222222 13432 1 223333
Q ss_pred HhhC-CCCCEEEEccCchhHH
Q 027405 170 KGTG-GKIDALVSGIGTGGTV 189 (224)
Q Consensus 170 ~q~~-~~~d~iv~pvG~Gg~~ 189 (224)
++.. .++| +|+++|+|+.+
T Consensus 79 ~~~~~~~~D-~IIavGGGS~i 98 (377)
T cd08176 79 AVFKKEGCD-FIISIGGGSPH 98 (377)
T ss_pred HHHHhcCCC-EEEEeCCcHHH
Confidence 3332 2466 56788887763
No 383
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=56.90 E-value=1e+02 Score=24.79 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=27.2
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
.+.+|++.+|.-|.+++......|..++++...
T Consensus 13 k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 13 RIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 377899999999999999888889988776543
No 384
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=56.83 E-value=87 Score=26.56 Aligned_cols=52 Identities=23% Similarity=0.214 Sum_probs=35.5
Q ss_pred CCCCCCcEEEeeCCChHHHHHHHHHHHcC-CeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKG-YRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 65 ~~~~g~~~vv~~ssGN~~~alA~~a~~~g-~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
.+.++...+|.+ .|..|.+++..|+.+| .+++++.. +..+.+.++.+|++-+
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 216 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHV 216 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEE
Confidence 345566667776 5669999999999998 67665533 2455666677887433
No 385
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=56.81 E-value=89 Score=27.02 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=40.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChH-HHHHHHHHHHHhCCCeEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK-GAVQKAEEIRDKTPNSYVLQQ 150 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 150 (224)
.|+..+++..+..++..+- ++-.-.|+++.-.-..-....+..|++++.++.+.++. +.....+.+...+...+++..
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~ 156 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCN 156 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeC
Confidence 3555555566555554433 22223344554333344456688999999887532221 111112222222335677654
Q ss_pred CCCC
Q 027405 151 FENP 154 (224)
Q Consensus 151 ~~~~ 154 (224)
..||
T Consensus 157 p~NP 160 (351)
T PRK14807 157 PNNP 160 (351)
T ss_pred CCCC
Confidence 4444
No 386
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=56.78 E-value=98 Score=26.38 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=36.5
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcC-CeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKG-YRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g-~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
...+.++...+|.+ .|..|.+++..|+.+| .++++ +.. ...+...++.+|++-
T Consensus 161 ~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~G~~~v~~-~~~--~~~~~~~~~~~g~~~ 214 (345)
T cd08286 161 NGKVKPGDTVAIVG-AGPVGLAALLTAQLYSPSKIIM-VDL--DDNRLEVAKKLGATH 214 (345)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEE-EcC--CHHHHHHHHHhCCCc
Confidence 33456676777764 5999999999999999 55444 333 456666767788743
No 387
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=56.65 E-value=1.2e+02 Score=28.45 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=38.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.++.-..|..|++.+..++.+|..++++ .. ...++++.+.+|++.+.++.
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~-d~--~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAF-DT--RPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE-eC--CHHHHHHHHHcCCeEEeccc
Confidence 4555678999999999999999885554 22 34477788889999877663
No 388
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=56.57 E-value=1e+02 Score=24.71 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=57.6
Q ss_pred CCCCCCCChhhHHHHHHHHHHH-HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCC
Q 027405 40 EMMEPCSSVKDRIGYSMIADAE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFG 116 (224)
Q Consensus 40 E~~~ptGS~K~R~a~~~l~~a~-~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~G 116 (224)
+...||.+ |+|-+.+-+.... =.| ..++.--+|+-+ ++.=|-..|...++++..+.. ....+.++.+|
T Consensus 20 ~~~RPT~d-rVREalFNil~~~~i~g------~~~LDlFAGSGa--LGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~ 90 (187)
T COG0742 20 PGTRPTTD-RVREALFNILAPDEIEG------ARVLDLFAGSGA--LGLEALSRGAARVVFVEKDRKAVKILKENLKALG 90 (187)
T ss_pred CCcCCCch-HHHHHHHHhccccccCC------CEEEEecCCccH--hHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 56778888 8887666654431 122 457776666654 455566678888888877643 33345566777
Q ss_pred --CEEEEeCCCCChHHHHHHHHHHHHhC-CCeEEeCC
Q 027405 117 --AELVLTDPARGMKGAVQKAEEIRDKT-PNSYVLQQ 150 (224)
Q Consensus 117 --a~V~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~ 150 (224)
.++..+.. ++....+++.... =+.+|++|
T Consensus 91 ~~~~~~~~~~-----da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 91 LEGEARVLRN-----DALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CccceEEEee-----cHHHHHHhcCCCCcccEEEeCC
Confidence 66666664 1223334444431 25677766
No 389
>PRK06354 pyruvate kinase; Provisional
Probab=56.53 E-value=93 Score=29.62 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEee-CCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCCh
Q 027405 50 DRIGYSMIADAEEKGLIRPGESVLIEP-TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM 128 (224)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~-ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~ 128 (224)
.-.+...+.-|.+.+. +.++.. .+|++++.+|.+ +-..+.+++.|..... +++.-.+|..-+.++...+.
T Consensus 363 ~~ia~aa~~~a~~~~a-----~~Iv~~T~sG~ta~~vsk~--Rp~~pI~a~t~~~~~~--r~l~l~~GV~p~~~~~~~~~ 433 (590)
T PRK06354 363 NAISQAVSHIALQLDA-----AAIVTLTKSGATARNVSKY--RPKTPILAVTPNESVA--RRLQLVWGVTPLLVLDAPST 433 (590)
T ss_pred HHHHHHHHHHHhhcCC-----CEEEEECCChHHHHHHHhh--CCCCCEEEECCCHHHH--HHhhcccCcEEEEeCCCCCH
Confidence 3445555555555543 345554 478888777654 4567777766544222 22334578887777655566
Q ss_pred HHHHHHHHHHHHhC
Q 027405 129 KGAVQKAEEIRDKT 142 (224)
Q Consensus 129 ~~~~~~a~~~~~~~ 142 (224)
++..+.+.+.+++.
T Consensus 434 ~~~~~~~~~~~~~~ 447 (590)
T PRK06354 434 DETFDAAINVAQES 447 (590)
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777776653
No 390
>PRK06057 short chain dehydrogenase; Provisional
Probab=56.46 E-value=1.1e+02 Score=24.87 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=41.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHH-HHHhCCCEEEEeCCCCChHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRM-VLLAFGAELVLTDPARGMKGAVQKAEEIR 139 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~-~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~ 139 (224)
.+.+|++.+|.-|.+++......|.+++++.... .+.+ ..+..+.+++.++.. +.++..+...+..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~---~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~ 74 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDP---EAGKAAADEVGGLFVPTDVT-DEDAVNALFDTAA 74 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHcCCcEEEeeCC-CHHHHHHHHHHHH
Confidence 4788999999999999999888999887764432 2222 223345566666642 3344444444443
No 391
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=56.31 E-value=83 Score=27.46 Aligned_cols=82 Identities=10% Similarity=-0.031 Sum_probs=39.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 151 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (224)
.|+..+++..+..++..+- +.-.-.|+++.-.-..-...++.+|.+++.++...++.--.+..++..++....+++...
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 168 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNP 168 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCC
Confidence 3555555566555444332 222223444543334445667889999998875322110011122222233356666544
Q ss_pred CCC
Q 027405 152 ENP 154 (224)
Q Consensus 152 ~~~ 154 (224)
.||
T Consensus 169 ~NP 171 (371)
T PRK05166 169 SNP 171 (371)
T ss_pred CCC
Confidence 454
No 392
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=56.18 E-value=81 Score=23.40 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHH
Q 027405 82 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 135 (224)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a 135 (224)
|..+|-.....|.+.+|+ ...-+.-+..++..|-+|+..++ .+.+++.+..
T Consensus 54 G~~~a~~l~~~gvdvvi~--~~iG~~a~~~l~~~GIkv~~~~~-~~V~e~i~~~ 104 (121)
T COG1433 54 GIRIAELLVDEGVDVVIA--SNIGPNAYNALKAAGIKVYVAPG-GTVEEAIKAF 104 (121)
T ss_pred hHHHHHHHHHcCCCEEEE--CccCHHHHHHHHHcCcEEEecCC-CCHHHHHHHH
Confidence 455666777777777775 33345556677888888888876 5666666544
No 393
>PLN02583 cinnamoyl-CoA reductase
Probab=55.70 E-value=1e+02 Score=25.96 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=28.8
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
...+|++.+|--|..++......|.++++++..
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 367899999999999999999999999988764
No 394
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=55.61 E-value=27 Score=26.15 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCCCCcEEEeeCCChHHHH--HHHHHHHcCCeEEEEE
Q 027405 66 IRPGESVLIEPTSGNTGIG--LAFMAAAKGYRLIITM 100 (224)
Q Consensus 66 ~~~g~~~vv~~ssGN~~~a--lA~~a~~~g~~~~ivv 100 (224)
+.|++.-|+.++|||+..- .+..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4566677777888887665 4566999999998875
No 395
>PRK07775 short chain dehydrogenase; Provisional
Probab=55.56 E-value=1.2e+02 Score=25.08 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=41.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEI 138 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~ 138 (224)
..+|++.+|.-|.+++......|.+++++....... .....++..|.++..+..+ .+.++..+..++.
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQA 81 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 578888899999999998888899877665432111 1223345567777655432 2333333444444
No 396
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=55.46 E-value=40 Score=27.61 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=38.5
Q ss_pred CCCCCCCcEEEeeCCCh----HHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 64 GLIRPGESVLIEPTSGN----TGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN----~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
|.+.+|...+|++..|. .+..+++.+...|-+++.|.-+..+...++.++.+|-+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 45667777788766655 45555666556788888887777677777778877764
No 397
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=55.38 E-value=1e+02 Score=27.28 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=40.1
Q ss_pred CeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHH--HHHHHHHHHHhCC-CeEEeCCC-CCCcchHhHHHhHHHHHH
Q 027405 94 YRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG--AVQKAEEIRDKTP-NSYVLQQF-ENPANPKIHYETTGPEIW 169 (224)
Q Consensus 94 ~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~--~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~a~Ei~ 169 (224)
.+..++..++.-...-+.++.+|-++.++.....+.. ..+...+..++.+ .....+.. .||.. ....-+.+.+
T Consensus 6 ~p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~---~~v~~~~~~~ 82 (382)
T cd08187 6 NPTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRL---ETVREGIELC 82 (382)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCH---HHHHHHHHHH
Confidence 3455555555444444455666777766643222321 2334444444431 12222222 13321 1122233444
Q ss_pred HhhCCCCCEEEEccCchhHH
Q 027405 170 KGTGGKIDALVSGIGTGGTV 189 (224)
Q Consensus 170 ~q~~~~~d~iv~pvG~Gg~~ 189 (224)
++. ++|. |+++|+|+.+
T Consensus 83 ~~~--~~D~-IIaiGGGS~i 99 (382)
T cd08187 83 KEE--KVDF-ILAVGGGSVI 99 (382)
T ss_pred HHc--CCCE-EEEeCChHHH
Confidence 443 4674 6788877754
No 398
>PLN02623 pyruvate kinase
Probab=55.34 E-value=1.9e+02 Score=27.48 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCeEEEEE---------cC--CCCHHHHHHHHhCCCEEEEeCCC---CChH-HHHHHHHHHHHhCCCe-EE
Q 027405 84 GLAFMAAAKGYRLIITM---------PA--SMSLERRMVLLAFGAELVLTDPA---RGMK-GAVQKAEEIRDKTPNS-YV 147 (224)
Q Consensus 84 alA~~a~~~g~~~~ivv---------p~--~~~~~~~~~~~~~Ga~V~~~~~~---~~~~-~~~~~a~~~~~~~~~~-~~ 147 (224)
-+...|+..|.++.+.. |. .+...........|++.+....+ +.|. ++.+...+.+++-+.. .+
T Consensus 367 ~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~ 446 (581)
T PLN02623 367 EIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPE 446 (581)
T ss_pred HHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhccc
Confidence 35567899999998643 22 22334566667789998887743 2332 4444333333221111 11
Q ss_pred --e----CCCCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027405 148 --L----QQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212 (224)
Q Consensus 148 --~----~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~ 212 (224)
. ....+. ....-....+.++.+.++ .. ||+..-+|.++--+ ....|.+.|+++.+..
T Consensus 447 ~~~~~~~~~~~~~-~~~~~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~l----Sr~RP~~pI~avT~~~ 509 (581)
T PLN02623 447 GTTPPNLGQAFKN-HMSEMFAFHATMMANTLG--TS-IIVFTRTGFMAILL----SHYRPSGTIFAFTNEK 509 (581)
T ss_pred chhhhhhccccCC-ChHHHHHHHHHHHHHhcC--Cc-EEEECCCcHHHHHH----HhhCCCCCEEEECCCH
Confidence 0 010111 112345556677778774 34 99999999986554 4457889999998875
No 399
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=55.29 E-value=1.2e+02 Score=25.23 Aligned_cols=94 Identities=11% Similarity=0.048 Sum_probs=46.1
Q ss_pred HHHHHHHHHc--CCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeE---EeCCCCCCcch
Q 027405 83 IGLAFMAAAK--GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY---VLQQFENPANP 157 (224)
Q Consensus 83 ~alA~~a~~~--g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 157 (224)
..+.++++.+ |.+.--+-..+.-..-++.....|-.|.+++... ..+.+.++.+.++. +.- +-++|.++.
T Consensus 70 ~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~-- 144 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFTPE-- 144 (243)
T ss_pred HHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCCHH--
Confidence 4566666655 3331111111112233445566788899998632 33334445454444 322 224443321
Q ss_pred HhHHHhHHHHHHHhhC-CCCCEEEEccCchh
Q 027405 158 KIHYETTGPEIWKGTG-GKIDALVSGIGTGG 187 (224)
Q Consensus 158 ~~g~~t~a~Ei~~q~~-~~~d~iv~pvG~Gg 187 (224)
+ ..++++++. ..+|.|+++.|+-=
T Consensus 145 -e-----~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 145 -Q-----RQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred -H-----HHHHHHHHHhcCCCEEEEECCCcH
Confidence 1 123455543 25899999998643
No 400
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=55.28 E-value=79 Score=28.06 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=12.7
Q ss_pred HHHHhhCCCCCEEEEccCchhHH
Q 027405 167 EIWKGTGGKIDALVSGIGTGGTV 189 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvG~Gg~~ 189 (224)
+++++. ++| +|+++|+|+.+
T Consensus 81 ~~~~~~--~~D-~IIaiGGGS~i 100 (382)
T PRK10624 81 EVFKAS--GAD-YLIAIGGGSPQ 100 (382)
T ss_pred HHHHhc--CCC-EEEEeCChHHH
Confidence 444443 467 67788887764
No 401
>PRK06924 short chain dehydrogenase; Provisional
Probab=55.15 E-value=98 Score=24.89 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=39.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEI 138 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~ 138 (224)
..+|++++|.-|.++|......|.+++++.... ........+..+.+++.+..+ .+.++..+..++.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE-NKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEI 70 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc-hHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHH
Confidence 468889999999999999888899877765432 122222223345555444321 2334444444444
No 402
>PRK08251 short chain dehydrogenase; Provisional
Probab=55.14 E-value=1.1e+02 Score=24.57 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=26.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+.+|++.+|.-|.++|..-...|.+++++...
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 57889999999999999888889877666543
No 403
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=55.11 E-value=1.1e+02 Score=24.58 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=70.5
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC-CCHHHHHHHHhCCCE-EEEeCCCCChHHHHHHHHHHHHhCC
Q 027405 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAE-LVLTDPARGMKGAVQKAEEIRDKTP 143 (224)
Q Consensus 66 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~-V~~~~~~~~~~~~~~~a~~~~~~~~ 143 (224)
++|| ..+++-..|.-.+++-++...-..+++.+-.+. .-....+.++.+|.+ +..+.+ +..++.. .+. .+
T Consensus 32 ~~~g-~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g--~Ap~~L~---~~~--~~ 103 (187)
T COG2242 32 PRPG-DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG--DAPEALP---DLP--SP 103 (187)
T ss_pred CCCC-CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec--cchHhhc---CCC--CC
Confidence 4455 468888877777777777333455555553322 222334455667764 555654 2222221 111 35
Q ss_pred CeEEeCCCCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 027405 144 NSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 215 (224)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~ 215 (224)
+.+|+....+.. ..-.+ .++-+ ..-..+|+-+-+=-+++-+...+++.+-. .|+-++-..+..
T Consensus 104 daiFIGGg~~i~----~ile~---~~~~l-~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~ 166 (187)
T COG2242 104 DAIFIGGGGNIE----EILEA---AWERL-KPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKP 166 (187)
T ss_pred CEEEECCCCCHH----HHHHH---HHHHc-CcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeeccee
Confidence 778887653321 11111 12222 12346777776767777777777777654 566555554433
No 404
>PRK07069 short chain dehydrogenase; Validated
Probab=55.03 E-value=1.1e+02 Score=24.53 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=24.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
.+|++.+|.-|.++|..-...|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788888889999998887889887776544
No 405
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=55.00 E-value=1e+02 Score=27.01 Aligned_cols=55 Identities=33% Similarity=0.491 Sum_probs=39.2
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+++..+|. ..|..|.+++..|+.+|...++++..+ ..+.+.++.+|++-+.
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~~--~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEIS--EERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHHHHHHHcCCCEEE
Confidence 456777777777 569999999999999998544444332 3477788889985443
No 406
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=54.94 E-value=69 Score=28.49 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=40.7
Q ss_pred CeEEEEEcCCCCHHHHHHHHhCCC-EEEEeCCCCChH--HHHHHHHHHHHhCCC-eEEeCCC-CCCcchHhHHHhHHHHH
Q 027405 94 YRLIITMPASMSLERRMVLLAFGA-ELVLTDPARGMK--GAVQKAEEIRDKTPN-SYVLQQF-ENPANPKIHYETTGPEI 168 (224)
Q Consensus 94 ~~~~ivvp~~~~~~~~~~~~~~Ga-~V~~~~~~~~~~--~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~g~~t~a~Ei 168 (224)
.+..|+...+.-...-+.++.+|. ++.++... ... ...+...+..++.+- ..+.+.. .||.. -...-+.|+
T Consensus 8 ~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~-~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~---~~v~~~~~~ 83 (383)
T PRK09860 8 IPSVNVIGADSLTDAMNMMADYGFTRTLIVTDN-MLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTT---ENVAAGLKL 83 (383)
T ss_pred cCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCH---HHHHHHHHH
Confidence 455555555544444455666774 55555431 221 123344444444321 2222221 23432 122334455
Q ss_pred HHhhCCCCCEEEEccCchhHH
Q 027405 169 WKGTGGKIDALVSGIGTGGTV 189 (224)
Q Consensus 169 ~~q~~~~~d~iv~pvG~Gg~~ 189 (224)
.++. ++| +|+++|+|+.+
T Consensus 84 ~~~~--~~D-~IiaiGGGS~i 101 (383)
T PRK09860 84 LKEN--NCD-SVISLGGGSPH 101 (383)
T ss_pred HHHc--CCC-EEEEeCCchHH
Confidence 5554 467 46778887764
No 407
>PTZ00066 pyruvate kinase; Provisional
Probab=54.87 E-value=1.1e+02 Score=28.50 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=11.8
Q ss_pred hCCCEEEEeCCCCChHHHHHHHHHHHHh
Q 027405 114 AFGAELVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 114 ~~Ga~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
.||..-+..+...+.++..+.+.+.+++
T Consensus 453 ~wGV~p~~~~~~~~~~~~i~~a~~~~~~ 480 (513)
T PTZ00066 453 ARGVTTYVVNSFQGTDVVIRNAIALAKE 480 (513)
T ss_pred ccCcEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3455544444322334444444444433
No 408
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=54.81 E-value=1.2e+02 Score=24.96 Aligned_cols=56 Identities=30% Similarity=0.510 Sum_probs=37.8
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
...+.++...+|...+|..|.+++..++.+|.+.+++... ..+.+.++.+|++...
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHVI 189 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCceee
Confidence 3455666677777777999999999999999986555332 2344445556764433
No 409
>PRK12831 putative oxidoreductase; Provisional
Probab=54.78 E-value=61 Score=29.58 Aligned_cols=52 Identities=19% Similarity=0.102 Sum_probs=39.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC---CC--HHHHHHHHhCCCEEEEe
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS---MS--LERRMVLLAFGAELVLT 122 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~---~~--~~~~~~~~~~Ga~V~~~ 122 (224)
+.++...+||.|.-+|..+.++|.+++++...+ .+ ...++.++..|.+++.-
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 568888999999999999999999998887643 22 23445566778887643
No 410
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=54.77 E-value=1.5e+02 Score=26.00 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEEEcCCC--CHHHHHH----HHhCCCEEEEeC
Q 027405 79 GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTD 123 (224)
Q Consensus 79 GN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~----~~~~Ga~V~~~~ 123 (224)
.|.+++++.+++.+|++++++.|+.. +...+.. .+..|+++..+.
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 58999999999999999999999853 2233322 245677776654
No 411
>PRK07985 oxidoreductase; Provisional
Probab=54.60 E-value=1.1e+02 Score=25.69 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=42.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC-C-H-HHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-S-L-ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~-~-~-~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
+.+|++.+|.-|.++|......|.+++++..... . . ...+.++..|.++..+..+ .+.++..+..++..++
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 6789999999999999998899999877543221 1 1 1222334567776554432 2333344444444443
No 412
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=54.01 E-value=1.1e+02 Score=27.63 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=24.0
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEEcCCC
Q 027405 76 PTSGNTGIGLAFMAAAKGYRLIITMPASM 104 (224)
Q Consensus 76 ~ssGN~~~alA~~a~~~g~~~~ivvp~~~ 104 (224)
+.-|.+..+|+.+-+.+|.++.|++|.-.
T Consensus 17 GGl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 17 GGLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 44478888899998899999999999753
No 413
>PRK06247 pyruvate kinase; Provisional
Probab=53.88 E-value=1.2e+02 Score=28.02 Aligned_cols=90 Identities=26% Similarity=0.338 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCcEEEeeC-CChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Q 027405 47 SVKDRIGYSMIADAEEKGLIRPGESVLIEPT-SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (224)
Q Consensus 47 S~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s-sGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
...+-.+...+.-|.+.+. +.+++.| +|++++.+|.+ +-..+.+++.|......++... ||..-+.++..
T Consensus 352 ~~~~~ia~sa~~~A~~l~a-----~~Iv~~T~sG~ta~~isk~--RP~~pI~a~t~~~~~~r~l~l~--~GV~p~~~~~~ 422 (476)
T PRK06247 352 TKRDAISYAARDIAERLDL-----AALVAYTSSGDTALRAARE--RPPLPILALTPNPETARRLALT--WGVHCVVVDDA 422 (476)
T ss_pred CHHHHHHHHHHHHHHhCCC-----CEEEEEcCCcHHHHHHHhh--CCCCCEEEECCCHHHHHHhhcc--cCCeeEecCCC
Q ss_pred CChHHHHHHHHHHHHhCCCeE
Q 027405 126 RGMKGAVQKAEEIRDKTPNSY 146 (224)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~ 146 (224)
.+.++....+.+++++. +..
T Consensus 423 ~~~~~~~~~a~~~~~~~-g~~ 442 (476)
T PRK06247 423 RDTDDMVRRADRIALAE-GFY 442 (476)
T ss_pred CCHHHHHHHHHHHHHHc-CCC
No 414
>PRK14031 glutamate dehydrogenase; Provisional
Probab=53.88 E-value=75 Score=29.10 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 50 DRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
-|+..+.+..+.+...+....++++.-..||-|...|.....+|.+++++.+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4577777777665433334447788888999999999999999999999877
No 415
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=53.87 E-value=1.3e+02 Score=25.20 Aligned_cols=56 Identities=30% Similarity=0.420 Sum_probs=37.7
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEe
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~ 122 (224)
.+.+.++...++. .+|..|.+++..|+.+|++++++.+ +..+.+.++.+|++-+..
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLN 215 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEc
Confidence 3446667666775 4678899999999999998554422 345556667778754443
No 416
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=53.79 E-value=71 Score=24.62 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=38.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
..++...+||.|.+.+.++..+|.+.+++ + ....+++..+..++..+.++
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~--d-~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP--D-ERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE--E-SSHHHHHHHHHTTTEESEET
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec--c-CCHHHHHhhhcccCceEEEc
Confidence 35677789999999999999999997776 2 24566777788899887775
No 417
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=53.69 E-value=1.2e+02 Score=24.75 Aligned_cols=50 Identities=34% Similarity=0.488 Sum_probs=36.4
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCC
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga 117 (224)
+.+.++...+|...+|..|.+++..++..|++.+++.+.. +.+.++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 4466776767777779999999999999999977665432 4444566775
No 418
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=53.63 E-value=1.1e+02 Score=24.19 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=35.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~ 124 (224)
+|++++|-.|..+|......|.+++++.....+ ......++..|+++..+..
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVC 55 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEe
Confidence 678889999999998888889987776544311 1233445667877665543
No 419
>PRK08267 short chain dehydrogenase; Provisional
Probab=53.56 E-value=98 Score=25.13 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+.+|++.+|.-|.+++......|.+++++...
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 46889999999999999988899988877543
No 420
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.55 E-value=1.3e+02 Score=24.92 Aligned_cols=56 Identities=25% Similarity=0.439 Sum_probs=40.3
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.+.+.++...+|.+..|..|.+++..++..|++++++.+. .+.+.++.+|++-+.
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~----~~~~~~~~~g~~~~~ 193 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS----EKAAFARSLGADPII 193 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech----HHHHHHHHcCCCEEE
Confidence 45566777677777778999999999999999997665432 455555667875433
No 421
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=53.53 E-value=1.4e+02 Score=25.33 Aligned_cols=56 Identities=30% Similarity=0.472 Sum_probs=41.2
Q ss_pred HHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEE
Q 027405 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (224)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V 119 (224)
.+...+.++...+|.+ +|..|.+++..|+.+|.+.++.+.. ...+...++.+|++-
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 209 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGADI 209 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcE
Confidence 3455667777777775 5889999999999999986665443 467777778889853
No 422
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=53.51 E-value=75 Score=32.29 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=28.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
..|+...+|..|++.|+..++.|++++||=..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 46888999999999999999999999999543
No 423
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=53.40 E-value=88 Score=26.70 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=35.6
Q ss_pred CCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 66 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
+.++...+|.+ .|..|.+++..|+.+|++.+++.+. ..+++.++.+|++-++
T Consensus 167 ~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 56666677755 6899999999999999976555332 3445555667765443
No 424
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.35 E-value=68 Score=26.62 Aligned_cols=48 Identities=29% Similarity=0.314 Sum_probs=36.3
Q ss_pred CCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 68 ~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
+++..++.+.+|..|.+++..|+.+|.+.+...+ ...+++.++.+|+.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 179 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAA 179 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCc
Confidence 4667777788899999999999999998555432 34667777778875
No 425
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=53.08 E-value=40 Score=23.36 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 027405 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 215 (224)
Q Consensus 169 ~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~ 215 (224)
+++.=...|.+|+-...|...--++-.++....++-|+.|++.++-.
T Consensus 5 ~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~v 51 (84)
T PF11760_consen 5 LRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFV 51 (84)
T ss_dssp HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EE
T ss_pred HHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEE
Confidence 34432468999999999999999999999888899999999998643
No 426
>PRK07201 short chain dehydrogenase; Provisional
Probab=53.06 E-value=1e+02 Score=29.17 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=44.0
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~~~ 141 (224)
...+|++.+|.-|.++|..-...|.+++++...... ....+.++..|.++..+..+ .+.++..+..++..++
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 367888999999999999888889988777554321 12233445567776655432 2334444444554444
No 427
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=52.96 E-value=74 Score=29.07 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=39.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC---------C---------HHHHHHHHhCCCEEEE
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---------S---------LERRMVLLAFGAELVL 121 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~V~~ 121 (224)
..++...+|..|++.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 5688899999999999999999999888843321 1 1345677889998864
No 428
>PRK09414 glutamate dehydrogenase; Provisional
Probab=52.91 E-value=77 Score=29.02 Aligned_cols=52 Identities=12% Similarity=-0.079 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 50 DRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
-|+..+.+..+.+.........+|+.-..||-|..+|.....+|.+++.+..
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4577777777665443333347788888999999999999999999988855
No 429
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=52.91 E-value=76 Score=28.96 Aligned_cols=77 Identities=21% Similarity=0.123 Sum_probs=49.9
Q ss_pred CCChhhHHHHHHHHHHH-HcCC---C---CCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC-------------
Q 027405 45 CSSVKDRIGYSMIADAE-EKGL---I---RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM------------- 104 (224)
Q Consensus 45 tGS~K~R~a~~~l~~a~-~~g~---~---~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~------------- 104 (224)
.++...+.....+.+.. +.+. . .+....|+...+|..|++.|..++..|.++++|-....
T Consensus 111 ~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~ 190 (471)
T PRK12810 111 FGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFK 190 (471)
T ss_pred CCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCccc
Confidence 34566666665555432 2221 0 01124688888999999999999999999999854321
Q ss_pred -C----HHHHHHHHhCCCEEEE
Q 027405 105 -S----LERRMVLLAFGAELVL 121 (224)
Q Consensus 105 -~----~~~~~~~~~~Ga~V~~ 121 (224)
+ ...++.+..+|.+++.
T Consensus 191 ~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 191 LEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCHHHHHHHHHHHHhCCcEEEe
Confidence 1 1235567888988864
No 430
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.90 E-value=1.2e+02 Score=25.00 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=39.6
Q ss_pred cEEEeeC--CChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHH-hCCC-EEEEeCCCCChHHHHHHHHHHHHh
Q 027405 71 SVLIEPT--SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGA-ELVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~s--sGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~-~~Ga-~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
..+|++. ++--|.++|......|.++++..........++.+. ..|. ..+.++- .+.++..+...+..++
T Consensus 8 ~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 8 KILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDV-ASDDEINQVFADLGKH 81 (261)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCC-CCHHHHHHHHHHHHHH
Confidence 5677773 556788888888888998877533222223344443 3343 3344554 3455555555555544
No 431
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=52.83 E-value=1.6e+02 Score=25.81 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=38.6
Q ss_pred HcCCCCCCCcEEEeeCC--ChHHHHHHHHHHHcCCeEEEEEcCCC--CHHHHHH----HHhCCCEEEEeC
Q 027405 62 EKGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTD 123 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ss--GN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~----~~~~Ga~V~~~~ 123 (224)
+.|.+. | .+|+-... -|.+.+++..++.+|++++++.|+.. +...++. .+..|.++..++
T Consensus 149 ~~g~l~-g-~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 149 HFGPLK-G-LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred HhCCCC-C-CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 345543 2 33443333 38999999999999999999999863 3333222 244677776654
No 432
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=52.83 E-value=1.5e+02 Score=26.01 Aligned_cols=56 Identities=27% Similarity=0.326 Sum_probs=38.4
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhC-CCEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF-GAELV 120 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~-Ga~V~ 120 (224)
+...+.++...+|. .+|-.|.+++..|+..|.+.++++..+ ..+++.++.+ |++++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~~--~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDRV--PERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHHHHHHHcCCcEEE
Confidence 44556677666666 568889999999999998644554333 5667777777 66544
No 433
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.43 E-value=1.3e+02 Score=24.46 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=40.9
Q ss_pred cEEEeeCC--ChHHHHHHHHHHHcCCeEEEEEcC-----------CCCH-HHHHHHHhCCCEEEEeCCC-CChHHHHHHH
Q 027405 71 SVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPA-----------SMSL-ERRMVLLAFGAELVLTDPA-RGMKGAVQKA 135 (224)
Q Consensus 71 ~~vv~~ss--GN~~~alA~~a~~~g~~~~ivvp~-----------~~~~-~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a 135 (224)
+.+|++.+ |.-|.++|..-...|.+++++... .... .....++.+|.+++.+..+ .+.++.....
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 86 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRVF 86 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 56777766 478888888888889987776543 1111 1223445567777666542 2233344444
Q ss_pred HHHHHh
Q 027405 136 EEIRDK 141 (224)
Q Consensus 136 ~~~~~~ 141 (224)
.++.++
T Consensus 87 ~~~~~~ 92 (256)
T PRK12748 87 YAVSER 92 (256)
T ss_pred HHHHHh
Confidence 555443
No 434
>PRK06198 short chain dehydrogenase; Provisional
Probab=52.35 E-value=1.2e+02 Score=24.42 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=35.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--HHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|..+|......|.+.++++..+... .....+...+.++..+.
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 62 (260)
T PRK06198 8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQ 62 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 678888899999999999888999844444443221 22334556788875544
No 435
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=51.82 E-value=1.5e+02 Score=25.21 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=31.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
++..++|..+..++..+-..+-.-.|++|...-......++..|++++.++.
T Consensus 36 ~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (352)
T cd00616 36 AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDI 87 (352)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEec
Confidence 4445566665555544432223345667776666666677788888888764
No 436
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=51.77 E-value=64 Score=29.05 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEEEcCCC--CHHHHHH----HHhCCCEEEEeC
Q 027405 79 GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTD 123 (224)
Q Consensus 79 GN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~----~~~~Ga~V~~~~ 123 (224)
.|.+.+++.++..+|++++++-|+.. .+..++. .+..|+.+....
T Consensus 204 ~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 204 LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37889999999999999999999853 3333332 455788776654
No 437
>PTZ00376 aspartate aminotransferase; Provisional
Probab=51.75 E-value=1.7e+02 Score=25.85 Aligned_cols=77 Identities=6% Similarity=-0.092 Sum_probs=43.7
Q ss_pred CCCChhhHHHHHHHHHHHHcC--CCCCCCcEEE--eeCCChHHHHHHHHH--HHcCCeEEEEEcCCCCHHHHHHHHhCCC
Q 027405 44 PCSSVKDRIGYSMIADAEEKG--LIRPGESVLI--EPTSGNTGIGLAFMA--AAKGYRLIITMPASMSLERRMVLLAFGA 117 (224)
Q Consensus 44 ptGS~K~R~a~~~l~~a~~~g--~~~~g~~~vv--~~ssGN~~~alA~~a--~~~g~~~~ivvp~~~~~~~~~~~~~~Ga 117 (224)
+.|.-..|-+..-. ....+ .+.++ .|+ ...+++.+..++..+ ..++-.-.|+++.-+-..-...++..|+
T Consensus 71 ~~G~~~lR~aia~~--~~~~~~~~~~~~--~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~ 146 (404)
T PTZ00376 71 IEGLQSFIEAAQKL--LFGEASYALAEK--RIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGL 146 (404)
T ss_pred CCCCHHHHHHHHHH--hcCCCccccccC--eEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCC
Confidence 46777777554432 22222 13343 244 355677777666543 2233334555665544555667788999
Q ss_pred EEEEeCC
Q 027405 118 ELVLTDP 124 (224)
Q Consensus 118 ~V~~~~~ 124 (224)
+++.++-
T Consensus 147 ~~~~v~l 153 (404)
T PTZ00376 147 NVKEYRY 153 (404)
T ss_pred ceeeccc
Confidence 9998874
No 438
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=51.72 E-value=1.4e+02 Score=24.90 Aligned_cols=55 Identities=33% Similarity=0.457 Sum_probs=37.0
Q ss_pred cCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEE
Q 027405 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (224)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~ 121 (224)
.+.+.++...++. .+|..|.+++..|+..|.+.+++.+ ...+++.++.+|++-++
T Consensus 155 ~~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 155 LGPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred hcCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 3456677565555 5788999999999999999655543 33455555566765443
No 439
>PRK06836 aspartate aminotransferase; Provisional
Probab=51.38 E-value=1.7e+02 Score=25.72 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=30.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
.++..++++.++.++..+- ..-.-.|+++...-..-...++.+|++++.++..
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~ 150 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD 150 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC
Confidence 3566666667666554432 2222344555533333455667899999988753
No 440
>PRK07023 short chain dehydrogenase; Provisional
Probab=51.21 E-value=1e+02 Score=24.70 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=34.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++.+|.-|.++|......|.+++++.....+ . .....+.++..+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~-~---~~~~~~~~~~~~~ 51 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP-S---LAAAAGERLAEVE 51 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch-h---hhhccCCeEEEEE
Confidence 46899999999999999988889998877544322 1 1334566665544
No 441
>PRK07576 short chain dehydrogenase; Provisional
Probab=51.19 E-value=1.4e+02 Score=24.53 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=35.1
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC-HHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.+++......|.+++++...... ......+...+.+++.+.
T Consensus 11 ~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 11 NVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 67889999999999999888889987776543221 112234445566655443
No 442
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=51.08 E-value=1.5e+02 Score=25.70 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=35.1
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+...++.+.+|. ..|..|.+++..|+.+|.+.+++... +..+...++.+|++..
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDY 229 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEE
Confidence 444566566665 56889999999999999986555432 2233344456888643
No 443
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=51.07 E-value=1.5e+02 Score=25.06 Aligned_cols=56 Identities=30% Similarity=0.401 Sum_probs=36.7
Q ss_pred HcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
+...+.+++..+|.+ +|-.|.+++..|+.+|++.++++.. ...+...++.+|.+-+
T Consensus 159 ~~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~~~~ 214 (343)
T cd08235 159 RKAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGADYT 214 (343)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCcEE
Confidence 334567777777775 6789999999999999994443322 3444445566776443
No 444
>PRK12746 short chain dehydrogenase; Provisional
Probab=51.03 E-value=1.3e+02 Score=24.22 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=34.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--HHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~ 123 (224)
+.+|++++|--|.++|......|.++++....+... .....+...+.++..+.
T Consensus 8 ~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (254)
T PRK12746 8 VALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIE 62 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 678999999999999998888898877764433211 11223344455665443
No 445
>PRK09242 tropinone reductase; Provisional
Probab=50.93 E-value=1.3e+02 Score=24.30 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=35.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHH-HHHHHHhC--CCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAF--GAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~-~~~~~~~~--Ga~V~~~~~ 124 (224)
..+|++.+|.-|.++|......|.+++++........ ....++.. +.++..+..
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAA 67 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 6788889999999999998889998777654321111 12223333 667766543
No 446
>PRK07577 short chain dehydrogenase; Provisional
Probab=50.90 E-value=1.2e+02 Score=23.94 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=40.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHH
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD 140 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~ 140 (224)
..+|++.+|-.|.++|......|.+++++...... ....+++..+-. +.++..+..+++.+
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~--------~~~~~~~~~D~~-~~~~~~~~~~~~~~ 65 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLGHQVIGIARSAID--------DFPGELFACDLA-DIEQTAATLAQINE 65 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc--------ccCceEEEeeCC-CHHHHHHHHHHHHH
Confidence 57899999999999999999999998887655422 123466666642 33333344444433
No 447
>PRK12742 oxidoreductase; Provisional
Probab=50.80 E-value=1.2e+02 Score=23.97 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=36.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHH-HHHhCCCEEEEeCC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRM-VLLAFGAELVLTDP 124 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~-~~~~~Ga~V~~~~~ 124 (224)
.+.+|++.+|.-|.++|......|.++++....+ ..+.+ .....+.+.+.++-
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecCC
Confidence 3678999999999999999888999877654433 12222 22445777666654
No 448
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=50.74 E-value=1e+02 Score=26.74 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=7.1
Q ss_pred CCCEEEEccCchhH
Q 027405 175 KIDALVSGIGTGGT 188 (224)
Q Consensus 175 ~~d~iv~pvG~Gg~ 188 (224)
++| .|+++|+|+.
T Consensus 77 ~~d-~IIaiGGGs~ 89 (337)
T cd08177 77 GAD-GIVAIGGGST 89 (337)
T ss_pred CCC-EEEEeCCcHH
Confidence 355 4556666554
No 449
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.70 E-value=1.4e+02 Score=24.44 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=36.7
Q ss_pred cEEEeeC--CChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHH-HhCCCE--EEEeCCCCChHHHHHHHHHHHHh
Q 027405 71 SVLIEPT--SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAE--LVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~s--sGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~--V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
..+|++. ++--|.++|..-...|.++++.-... .....+.+ +.++.+ .+.++- .+.++..+..++..++
T Consensus 9 ~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv-~~~~~i~~~~~~~~~~ 82 (256)
T PRK07889 9 RILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR-ALRLTERIAKRLPEPAPVLELDV-TNEEHLASLADRVREH 82 (256)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc-chhHHHHHHHhcCCCCcEEeCCC-CCHHHHHHHHHHHHHH
Confidence 5677776 56677788877777898876654322 12222222 234434 344443 2344444455554443
No 450
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=50.48 E-value=1.1e+02 Score=27.22 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=38.6
Q ss_pred CeEEEEEcCCCCHHHHHHHHhCCC-EEEEeCCCCChHH--HHHHHHHHHHhCC-CeEEeCCC-CCCcchHhHHHhHHHHH
Q 027405 94 YRLIITMPASMSLERRMVLLAFGA-ELVLTDPARGMKG--AVQKAEEIRDKTP-NSYVLQQF-ENPANPKIHYETTGPEI 168 (224)
Q Consensus 94 ~~~~ivvp~~~~~~~~~~~~~~Ga-~V~~~~~~~~~~~--~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~a~Ei 168 (224)
++..++...+.-...-+.++.+|. ++..+... +..+ ..+...+..++.+ .+...+.. .||.. ....-+.++
T Consensus 6 ~p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~-~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~---~~v~~~~~~ 81 (379)
T TIGR02638 6 LNETSYFGAGAIEDIVDEVKRRGFKKALVVTDK-DLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTI---TVVKAGVAA 81 (379)
T ss_pred CCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhccchHHHHHHHHHCCCeEEEECCCCCCcCH---HHHHHHHHH
Confidence 455555555544444445566674 55444431 2221 2233333333331 22222221 23321 112223344
Q ss_pred HHhhCCCCCEEEEccCchhHH
Q 027405 169 WKGTGGKIDALVSGIGTGGTV 189 (224)
Q Consensus 169 ~~q~~~~~d~iv~pvG~Gg~~ 189 (224)
+++. ++| +|+++|+|+.+
T Consensus 82 ~~~~--~~D-~IiaiGGGSvi 99 (379)
T TIGR02638 82 FKAS--GAD-YLIAIGGGSPI 99 (379)
T ss_pred HHhc--CCC-EEEEeCChHHH
Confidence 4443 466 56778888765
No 451
>PRK08339 short chain dehydrogenase; Provisional
Probab=50.13 E-value=1.2e+02 Score=24.91 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=26.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
..+|++++|.-|.++|......|.+++++..
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 6789999999999999999999998777644
No 452
>PRK05875 short chain dehydrogenase; Provisional
Probab=50.13 E-value=1.4e+02 Score=24.42 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=26.8
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEc
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp 101 (224)
+.+|++.+|.-|.++|......|.+++++..
T Consensus 9 ~vlItGasg~IG~~la~~l~~~G~~V~~~~r 39 (276)
T PRK05875 9 TYLVTGGGSGIGKGVAAGLVAAGAAVMIVGR 39 (276)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEeC
Confidence 6789999999999999998889998777654
No 453
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=50.11 E-value=84 Score=24.64 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHH-HHHHHHHHhCCCeEEeCCCCCCcc-hH
Q 027405 81 TGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV-QKAEEIRDKTPNSYVLQQFENPAN-PK 158 (224)
Q Consensus 81 ~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~-~~ 158 (224)
.--++|-+...-|++.++|......+...+....++.+|+++....+.|+-+ +.+.++.....+.+.+-..|.... .+
T Consensus 36 LIe~l~~Y~s~~g~~iivVFDA~~v~g~~~~~~~~~vsvvyT~~~ETADs~IEr~~~el~~~~t~~V~VaTSD~~EQ~~I 115 (173)
T COG3688 36 LIEALAEYQSFTGYKIIVVFDAHYVPGVGREYKNHRVSVVYTKEGETADSFIERYVAELRNAATHQVIVATSDRAEQWTI 115 (173)
T ss_pred HHHHHHHhhcccCceEEEEEEccccccccccccccceEEEEecCCccHHHHHHHHHHHHhccccceEEEEeCchhhhhhh
Confidence 3457889999999999999987544444445566789999998755555443 344555433333454444333221 13
Q ss_pred hHH---HhHHHHHHHhh
Q 027405 159 IHY---ETTGPEIWKGT 172 (224)
Q Consensus 159 ~g~---~t~a~Ei~~q~ 172 (224)
.|+ .-.+.|++..+
T Consensus 116 fg~GA~r~Sarel~~ev 132 (173)
T COG3688 116 FGQGALRMSARELYQEV 132 (173)
T ss_pred hccchHHHhHHHHHHHH
Confidence 333 34567777665
No 454
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=50.09 E-value=1.3e+02 Score=23.96 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=36.7
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~~ 124 (224)
..+|++.+|.-|.+++......|.+++++...+.. ......++..|.++..+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQA 58 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEc
Confidence 46889999999999999988899987775544322 1223345556766655543
No 455
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=49.98 E-value=57 Score=26.58 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=27.8
Q ss_pred hHHHHHHHhhCCCCCEEE-EccCchhHHHHHHHHHHhcCCCcEEEEEeCC
Q 027405 163 TTGPEIWKGTGGKIDALV-SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPV 211 (224)
Q Consensus 163 t~a~Ei~~q~~~~~d~iv-~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~ 211 (224)
.+..||+-++ +||.|| +.+-.||++.=.+.-++..+++.+|+||+-.
T Consensus 22 ~~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 22 VAYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 3446888888 577665 3344567665555566777789999999984
No 456
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=49.93 E-value=36 Score=27.43 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=37.6
Q ss_pred CCCCCCCcEEEeeCCCh----HHHHHHHHHHHc-CCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 64 GLIRPGESVLIEPTSGN----TGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN----~~~alA~~a~~~-g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
|.+.+|...++++..|. .+..+++.+... |-+|+.|.-+..+..-++.++.+|.+
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d 73 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWD 73 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCc
Confidence 44556677888877765 666667666666 99998887777777778888888864
No 457
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=49.90 E-value=1.3e+02 Score=24.08 Aligned_cols=154 Identities=11% Similarity=0.204 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC--C-CC--------HHH------HHH
Q 027405 49 KDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA--S-MS--------LER------RMV 111 (224)
Q Consensus 49 K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~--~-~~--------~~~------~~~ 111 (224)
....-...+..+..++. +-.++.+........+.--++..|++++.+-.. . .+ ... ...
T Consensus 40 d~~~q~~~i~~~i~~~~----d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l 115 (257)
T PF13407_consen 40 DPEEQIEQIEQAISQGV----DGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYL 115 (257)
T ss_dssp THHHHHHHHHHHHHTTE----SEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcC----CEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHH
Confidence 34555677778887774 234455555555556666788889999988544 1 10 111 223
Q ss_pred HHhCC--CEEEEeCCCCChHH---HHHHHHHHHHhCCCeEEeCCC-CCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCc
Q 027405 112 LLAFG--AELVLTDPARGMKG---AVQKAEEIRDKTPNSYVLQQF-ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 185 (224)
Q Consensus 112 ~~~~G--a~V~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~ 185 (224)
.+.++ .+|..+....++.. +.+-.++..++.+++-.+..+ ..... .........+++++- + +|.|++. +
T Consensus 116 ~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~l~~~-~-~~~i~~~--~ 190 (257)
T PF13407_consen 116 AEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEYPGVEIVDEYEYTDWD-PEDARQAIENLLQAN-P-VDAIIAC--N 190 (257)
T ss_dssp HHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHCTTEEEEEEEEECTTS-HHHHHHHHHHHHHHT-T-EEEEEES--S
T ss_pred HHHhccCceEEeccCCCCchHHHHHHHHHHHHHhhcceeeeeeeeeccCCC-HHHHHHHHHHhhhcC-C-ceEEEeC--C
Confidence 34445 57765533233332 333334444454455444311 11112 233333334555533 2 7777653 3
Q ss_pred hhHHHHHHHHHHhcCC--CcEEEEEeCC
Q 027405 186 GGTVTGAGKYLKEHNP--EIKLYGVEPV 211 (224)
Q Consensus 186 Gg~~~Gi~~~~k~~~~--~~~vigve~~ 211 (224)
...+.|+..++++.+. ++.++|+...
T Consensus 191 ~~~~~g~~~al~~~g~~~~~~v~g~d~~ 218 (257)
T PF13407_consen 191 DGMALGAAQALQQAGRAGKVIVVGFDGS 218 (257)
T ss_dssp HHHHHHHHHHHHHTTCTTTSEEEEEECH
T ss_pred ChHHHHHHHHHHHcCCcccceeecCCCC
Confidence 4455589999998763 4678888643
No 458
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=49.89 E-value=1.1e+02 Score=24.24 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=35.5
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH--HHHHHHHhCCCEEEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~V~~~~~ 124 (224)
..+|++.+|.-|..+|......|.+++++..++.+. .....+...+.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEG 57 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEe
Confidence 468889999999999999888999887766533211 112233445566655543
No 459
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.88 E-value=1.3e+02 Score=24.04 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=26.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+.+|++++|.-|.++|..-...|.++++....
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 67899999999999999888889988775543
No 460
>PRK07324 transaminase; Validated
Probab=49.67 E-value=98 Score=27.10 Aligned_cols=81 Identities=10% Similarity=0.011 Sum_probs=41.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC--CChH-HHHHHHHHHHHhCCCeEEe
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA--RGMK-GAVQKAEEIRDKTPNSYVL 148 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~--~~~~-~~~~~a~~~~~~~~~~~~~ 148 (224)
.|+..+++..+..++..+- ++-.-.|+++...-..-...++.+|++++.++.. .++. +... ..+....+...+++
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~-l~~~~~~~~kli~i 159 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDE-LRRLVRPNTKLICI 159 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHH-HHHhCCCCCcEEEE
Confidence 3555666667666665543 2222334444433334445678899999888742 1221 1111 22222233356666
Q ss_pred CCCCCC
Q 027405 149 QQFENP 154 (224)
Q Consensus 149 ~~~~~~ 154 (224)
+...||
T Consensus 160 ~~p~NP 165 (373)
T PRK07324 160 NNANNP 165 (373)
T ss_pred eCCCCC
Confidence 654555
No 461
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=49.63 E-value=82 Score=27.64 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHH----HHHhCCCEEEEeC
Q 027405 80 NTGIGLAFMAAAKGYRLIITMPASMS--LERRM----VLLAFGAELVLTD 123 (224)
Q Consensus 80 N~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~----~~~~~Ga~V~~~~ 123 (224)
|.+.++...++.+|++++++.|+... ...++ ..+..|+++..+.
T Consensus 168 ~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 168 NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 78999999999999999999998632 22222 2344677766554
No 462
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=49.43 E-value=26 Score=26.39 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=25.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~ 103 (224)
++...+|.-+.+++..++.+|++++++-|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 3557789999999999999999999998764
No 463
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=49.40 E-value=1.6e+02 Score=26.19 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=44.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC-ChHHHHHHHHHHHHhCCCeEEeC-
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-GMKGAVQKAEEIRDKTPNSYVLQ- 149 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~- 149 (224)
.|+..++++.++.++..+-..-=+ .|+++.-.-..-...++.+|++++.++.+. +++ .+..++..++....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pgd-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~p 219 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPGD-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILTP 219 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCCC-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEECC
Confidence 477777778877766554332113 344454444555667788999999887532 222 122223223334566765
Q ss_pred CCCCCc
Q 027405 150 QFENPA 155 (224)
Q Consensus 150 ~~~~~~ 155 (224)
..+||-
T Consensus 220 ~p~NPT 225 (431)
T PRK15481 220 RAHNPT 225 (431)
T ss_pred CCCCCC
Confidence 344553
No 464
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=49.27 E-value=1.7e+02 Score=24.97 Aligned_cols=65 Identities=18% Similarity=0.090 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 51 RIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 51 R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
=.+...+..+.+.....-..++++.-..|+.|.++|..++.+|.+++++-+. ..+......+|.+
T Consensus 132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 3455555555543211111245677777999999999999999976665432 2234444455654
No 465
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=49.24 E-value=1.3e+02 Score=26.47 Aligned_cols=83 Identities=14% Similarity=0.023 Sum_probs=40.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHH-HhCCCeEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIR-DKTPNSYVLQQ 150 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 150 (224)
.|+..+++..++.++..+- ..-.-.|+++.-.-..-....+.+|++++.++...++.--.+...+.. .++...+++..
T Consensus 105 ~I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 183 (380)
T PLN03026 105 NILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTS 183 (380)
T ss_pred hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeC
Confidence 3555555566665554332 121123444443333334455779999998875333321112222222 23346777765
Q ss_pred CCCCc
Q 027405 151 FENPA 155 (224)
Q Consensus 151 ~~~~~ 155 (224)
-+||-
T Consensus 184 P~NPT 188 (380)
T PLN03026 184 PNNPD 188 (380)
T ss_pred CCCCC
Confidence 44543
No 466
>PRK06436 glycerate dehydrogenase; Provisional
Probab=49.12 E-value=1.4e+02 Score=25.64 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=62.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
+++..-..|+-|+++|..++.+|++++++-+.... .|..... .+. +++.++. +.+.+.-
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------~~~~~~~----~~l-------~ell~~a-Div~~~l 181 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN---------DGISSIY----MEP-------EDIMKKS-DFVLISL 181 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc---------cCccccc----CCH-------HHHHhhC-CEEEECC
Confidence 56777788999999999999999998887553211 1221110 112 2344444 6666654
Q ss_pred CCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHH--HHHHHHHHh
Q 027405 151 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV--TGAGKYLKE 198 (224)
Q Consensus 151 ~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--~Gi~~~~k~ 198 (224)
-.++.+ +..+..+.++++ ++..+++-+|.|+.. ..+..+++.
T Consensus 182 p~t~~T----~~li~~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 182 PLTDET----RGMINSKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCCchh----hcCcCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 334332 234456778887 467899999988875 344455554
No 467
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=49.09 E-value=1.6e+02 Score=25.50 Aligned_cols=52 Identities=29% Similarity=0.336 Sum_probs=34.1
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
..+.++...+|. .+|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~ 234 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGAT 234 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 334566566666 57889999999999999884444332 24444555666764
No 468
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=49.06 E-value=1.4e+02 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=28.4
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~ 103 (224)
.+.+|++.+|.-|.++|......|.+++++....
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 3678899999999999999888999988886543
No 469
>PRK07825 short chain dehydrogenase; Provisional
Probab=48.84 E-value=1.5e+02 Score=24.28 Aligned_cols=67 Identities=16% Similarity=0.018 Sum_probs=40.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHH-HHhCC-CEEEEeCCCCChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMV-LLAFG-AELVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~-~~~~G-a~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+|.-|.++|......|.+++++... ..+++. .+..+ .+++.++-. +.++..+..+++.+.
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGARVAIGDLD---EALAKETAAELGLVVGGPLDVT-DPASFAAFLDAVEAD 75 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEccCC-CHHHHHHHHHHHHHH
Confidence 67899999999999999888889987666432 222222 22333 455555542 334444444444443
No 470
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=48.77 E-value=1.7e+02 Score=24.85 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=39.1
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCH-HHHHHHHhCCCEEEEeCCC-CChHHHHHHHHHHH
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIR 139 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~V~~~~~~-~~~~~~~~~a~~~~ 139 (224)
...+|++.+|--|.++|..-...|.+++++....... ...+.++..+.++..+..+ .+.++..+.++++.
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 78 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFR 78 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3678888888888888888888898877765432111 1222333334455444321 23444444445543
No 471
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=48.53 E-value=1.5e+02 Score=24.28 Aligned_cols=54 Identities=33% Similarity=0.420 Sum_probs=37.9
Q ss_pred CCCCCCCcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEE
Q 027405 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (224)
Q Consensus 64 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~ 120 (224)
..+.++...+|.+.+|..|.+++..++..|.+.+++.+ ...+++.++.+|++.+
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 188 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGADVA 188 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCCEE
Confidence 34556667778777889999999999999999655433 2345555566776543
No 472
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=48.51 E-value=29 Score=29.32 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=25.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
.|+...+|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 4778899999999999999999999999553
No 473
>PRK07041 short chain dehydrogenase; Provisional
Probab=48.43 E-value=89 Score=24.76 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=24.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+|++.+|.-|.++|..-...|.+++++...
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~ 30 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRS 30 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888889999999888889998777544
No 474
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=48.33 E-value=1e+02 Score=27.65 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=17.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 73 vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
++..+.|.+|.-++-.++++|.+++++-.+
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 455566666666666666666666666544
No 475
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=48.33 E-value=1.4e+02 Score=26.12 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHcCCeEEEEEcCCCC--HHHH----HHHHhCCCEEEEeC
Q 027405 80 NTGIGLAFMAAAKGYRLIITMPASMS--LERR----MVLLAFGAELVLTD 123 (224)
Q Consensus 80 N~~~alA~~a~~~g~~~~ivvp~~~~--~~~~----~~~~~~Ga~V~~~~ 123 (224)
|.+.+++.+++.+|++++++.|+... ...+ +..+..|+++..++
T Consensus 168 ~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 168 NMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 68999999999999999999998632 2222 12245688877654
No 476
>PRK05973 replicative DNA helicase; Provisional
Probab=48.19 E-value=87 Score=26.03 Aligned_cols=55 Identities=29% Similarity=0.407 Sum_probs=38.6
Q ss_pred CCCCCCCcEEEeeCC--ChH--HHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCE
Q 027405 64 GLIRPGESVLIEPTS--GNT--GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (224)
Q Consensus 64 g~~~~g~~~vv~~ss--GN~--~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (224)
|.+.+|..++|.+.. |=+ +..+|+.+...|.+++.|.-+..+....+.+..+|.+
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d 117 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCCC
Confidence 557788788887654 444 4445666656688888887777777777778878764
No 477
>PRK09135 pteridine reductase; Provisional
Probab=48.13 E-value=1.4e+02 Score=23.76 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=28.3
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~ 103 (224)
+.+|++.+|.-|..++..-...|.+++++....
T Consensus 8 ~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~ 40 (249)
T PRK09135 8 VALITGGARRIGAAIARTLHAAGYRVAIHYHRS 40 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 678999999999999999888899988886543
No 478
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.07 E-value=1.5e+02 Score=24.22 Aligned_cols=78 Identities=21% Similarity=0.158 Sum_probs=48.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHH-------------HHHHhCCCEEEEeCCCCChHHHHHHHHHH
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR-------------MVLLAFGAELVLTDPARGMKGAVQKAEEI 138 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~-------------~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~ 138 (224)
++.....||-|.++|..-...|++++|--.+....... .....-.++|++.-. -|.......+++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAV--P~~a~~~v~~~l 80 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAV--PFEAIPDVLAEL 80 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEec--cHHHHHhHHHHH
Confidence 45667889999999999999999988875443221110 011233466666553 355555566666
Q ss_pred HHhCCCeEEeCCC
Q 027405 139 RDKTPNSYVLQQF 151 (224)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (224)
....++...++..
T Consensus 81 ~~~~~~KIvID~t 93 (211)
T COG2085 81 RDALGGKIVIDAT 93 (211)
T ss_pred HHHhCCeEEEecC
Confidence 6555467777653
No 479
>PRK13243 glyoxylate reductase; Reviewed
Probab=47.99 E-value=1.9e+02 Score=25.21 Aligned_cols=104 Identities=22% Similarity=0.177 Sum_probs=64.0
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (224)
+++..-..|+-|.++|..++.+|++++++-+.. ... ....+|... . +++ ++.++. +.+.+.-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~--~----~l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY--R----PLE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe--c----CHH-------HHHhhC-CEEEEeC
Confidence 567777889999999999999999887664432 221 123344421 1 222 233444 6666554
Q ss_pred CCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHH--HHHHHHHHh
Q 027405 151 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV--TGAGKYLKE 198 (224)
Q Consensus 151 ~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~--~Gi~~~~k~ 198 (224)
-.++. -...+..|.++++ +++.+++-++.|+.. ..+..+++.
T Consensus 213 P~t~~----T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 213 PLTKE----TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred CCChH----HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 33332 2334556788887 478999999999876 344455543
No 480
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=47.75 E-value=40 Score=29.03 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=34.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~ 123 (224)
.++..++...+..++..+...+-..+|++|.-.-..-.+.++..|.+++.++
T Consensus 70 ~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~ 121 (363)
T PF00155_consen 70 NILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVP 121 (363)
T ss_dssp GEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEE
T ss_pred EEEEecccccchhhhhhcccccccccceecCCccccccccccccCceeeecc
Confidence 4666666666666666655433344566666555666777889999999887
No 481
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.69 E-value=1.9e+02 Score=25.29 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=23.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~ 103 (224)
..+|++.|.--|.++|.-|+..|-.++++..+.
T Consensus 35 hi~itggS~glgl~la~e~~~~ga~Vti~ar~~ 67 (331)
T KOG1210|consen 35 HILITGGSSGLGLALALECKREGADVTITARSG 67 (331)
T ss_pred eEEEecCcchhhHHHHHHHHHccCceEEEeccH
Confidence 345555555566677777999999999987764
No 482
>PRK05854 short chain dehydrogenase; Provisional
Probab=47.66 E-value=1.8e+02 Score=24.77 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=48.2
Q ss_pred eEEEEEcCCC--CHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCC--eEEeCCCCCCcchHhHHHhHHHHHHH
Q 027405 95 RLIITMPASM--SLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN--SYVLQQFENPANPKIHYETTGPEIWK 170 (224)
Q Consensus 95 ~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~g~~t~a~Ei~~ 170 (224)
+.++|...+. -..-.+.+...|++|+.+.. +.+...+..+++.++.++ ..++ +.| ... ..-...+..++.+
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R--~~~~~~~~~~~l~~~~~~~~v~~~-~~D-l~d-~~sv~~~~~~~~~ 89 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVR--NRAKGEAAVAAIRTAVPDAKLSLR-ALD-LSS-LASVAALGEQLRA 89 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHHHHhCCCCceEEE-Eec-CCC-HHHHHHHHHHHHH
Confidence 4555555442 23445566678999998875 333444444555443322 2222 222 122 3444566667776
Q ss_pred hhCCCCCEEEEccCch
Q 027405 171 GTGGKIDALVSGIGTG 186 (224)
Q Consensus 171 q~~~~~d~iv~pvG~G 186 (224)
.. +.+|.+|..+|..
T Consensus 90 ~~-~~iD~li~nAG~~ 104 (313)
T PRK05854 90 EG-RPIHLLINNAGVM 104 (313)
T ss_pred hC-CCccEEEECCccc
Confidence 65 5799999988753
No 483
>PRK08912 hypothetical protein; Provisional
Probab=47.56 E-value=1.9e+02 Score=25.22 Aligned_cols=52 Identities=8% Similarity=-0.014 Sum_probs=32.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.|+..+++..+..++..+-. +-.-.|+++...-..-...++.+|++++.++.
T Consensus 89 ~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 89 EVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL 140 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEec
Confidence 46667777887766555442 22234555554434445567889999987764
No 484
>PRK09206 pyruvate kinase; Provisional
Probab=47.44 E-value=2.3e+02 Score=26.15 Aligned_cols=121 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHcCCeEEEE-----------EcCCCCHHHHHHHHhCCCEEEEeCCC---CChH-HHHHHHHHHHHhCCCeEEe-
Q 027405 85 LAFMAAAKGYRLIIT-----------MPASMSLERRMVLLAFGAELVLTDPA---RGMK-GAVQKAEEIRDKTPNSYVL- 148 (224)
Q Consensus 85 lA~~a~~~g~~~~iv-----------vp~~~~~~~~~~~~~~Ga~V~~~~~~---~~~~-~~~~~a~~~~~~~~~~~~~- 148 (224)
+...|+.+|.++++- .|..+...-+...-.-|++-+...++ +.|. ++.+...+.+++.+..+..
T Consensus 263 ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~ 342 (470)
T PRK09206 263 MIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSR 342 (470)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcchh
Q ss_pred ---CCCCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCC
Q 027405 149 ---QQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPV 211 (224)
Q Consensus 149 ---~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~ 211 (224)
..............-.+.++.+++ +.++||+..-||.+ ++.+....|.+.|+++.|.
T Consensus 343 ~~~~~~~~~~~~~~~ia~sa~~~A~~l--~a~aIv~~T~sG~t----A~~is~~RP~~pIia~t~~ 402 (470)
T PRK09206 343 LESNNDNRKLRITEAVCRGAVETAEKL--DAPLIVVATQGGKS----ARSVRKYFPDATILALTTN 402 (470)
T ss_pred hhhhccccCCChHHHHHHHHHHHHhcC--CCCEEEEECCCcHH----HHHHHhhCCCCCEEEECCC
No 485
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.41 E-value=1.6e+02 Score=24.11 Aligned_cols=70 Identities=17% Similarity=0.032 Sum_probs=38.8
Q ss_pred cEEEeeCC--ChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHH-HhCCC-EEEEeCCCCChHHHHHHHHHHHHh
Q 027405 71 SVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGA-ELVLTDPARGMKGAVQKAEEIRDK 141 (224)
Q Consensus 71 ~~vv~~ss--GN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga-~V~~~~~~~~~~~~~~~a~~~~~~ 141 (224)
..+|++.+ +--|.++|......|.+++++........+++.+ +..+. .++.++- .+.++..+..++..++
T Consensus 12 ~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 12 RGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDV-REPGQLEAVFARIAEE 85 (258)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCc-CCHHHHHHHHHHHHHH
Confidence 56777655 3788899988888999877764432222223333 22332 2344443 2445555555555443
No 486
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=47.40 E-value=2.1e+02 Score=25.68 Aligned_cols=110 Identities=11% Similarity=0.030 Sum_probs=62.9
Q ss_pred cEEEeeCCChHHHHHHHHHHHc--CCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEe
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAK--GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVL 148 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~--g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (224)
+..|-+|+|+-|.+..-..+++ .++++.+.-......-.++++.++.+.+.+.. +......++.....+-.++.
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~----~~~~~~l~~~l~~~~~~v~~ 78 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVAD----EEAAKELKEALAAAGIEVLA 78 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcC----HHHHHHHHHhhccCCceEEE
Confidence 3456688999988876666655 67777777555555667788899999888763 11111111111110000111
Q ss_pred CCCCCCcchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHh
Q 027405 149 QQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKE 198 (224)
Q Consensus 149 ~~~~~~~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~ 198 (224)
...+ ..|+.+. +++|.|+.++++...+.-+..+++.
T Consensus 79 --------G~~~----~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~a 114 (385)
T PRK05447 79 --------GEEG----LCELAAL--PEADVVVAAIVGAAGLLPTLAAIRA 114 (385)
T ss_pred --------ChhH----HHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHC
Confidence 0111 1233332 3689999998876555556666654
No 487
>PRK05957 aspartate aminotransferase; Provisional
Probab=47.31 E-value=1e+02 Score=27.08 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=29.2
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
..++..++++.+..++..+- +.-.-.|+++.-.-..-...++..|++++.++.+
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred CeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 34676777777765554432 2222234444321122233456789999888754
No 488
>PRK06123 short chain dehydrogenase; Provisional
Probab=47.20 E-value=1.3e+02 Score=24.15 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=33.6
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCC--CHHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|.-|.++|..-...|..+++....+. .......++..|.+++.+.
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 58 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVA 58 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5688899999999999887778877555432221 1122334555676665444
No 489
>PRK07856 short chain dehydrogenase; Provisional
Probab=47.18 E-value=1.4e+02 Score=24.10 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.3
Q ss_pred CcEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 70 ~~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
.+.+|++.+|--|.++|..-...|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 367899999999999999988899988777543
No 490
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=47.07 E-value=1.7e+02 Score=26.95 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEee-CCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC-CC
Q 027405 49 KDRIGYSMIADAEEKGLIRPGESVLIEP-TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR 126 (224)
Q Consensus 49 K~R~a~~~l~~a~~~g~~~~g~~~vv~~-ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~-~~ 126 (224)
.+..+...+..|...+. +.+|+. .+|++++.+|.+ +-..+.+++.|......++ .-.||..-+.++. ..
T Consensus 358 ~~~ia~~a~~~a~~~~a-----kaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~~~v~R~L--~L~wGV~Pil~~~~~~ 428 (473)
T TIGR01064 358 TEAIALSAVEAAEKLDA-----KAIVVLTESGRTARLLSKY--RPNAPIIAVTPNERVARQL--ALYWGVFPFLVDEEPS 428 (473)
T ss_pred HHHHHHHHHHHHhhcCC-----CEEEEEcCChHHHHHHHhh--CCCCCEEEEcCCHHHHHHh--hccCCcEEEEeCCCCC
Confidence 44455555555555443 334444 357776666554 4456666666544222222 2346766665543 22
Q ss_pred ChHHHHHHHHHHHHh
Q 027405 127 GMKGAVQKAEEIRDK 141 (224)
Q Consensus 127 ~~~~~~~~a~~~~~~ 141 (224)
+.++....+.+++++
T Consensus 429 ~~~~~i~~a~~~l~~ 443 (473)
T TIGR01064 429 DTEARVNKALELLKE 443 (473)
T ss_pred CHHHHHHHHHHHHHH
Confidence 344445555555444
No 491
>PRK12747 short chain dehydrogenase; Provisional
Probab=47.03 E-value=1.3e+02 Score=24.29 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=35.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCC--HHHHHHHHhCCCEEEEeC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 123 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~V~~~~ 123 (224)
..+|++.+|--|.++|..-...|.++++....+.. ......++..|.++..+.
T Consensus 6 ~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 6 VALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 67899999999999999988899987775432211 122334455566655443
No 492
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=47.01 E-value=1.1e+02 Score=26.42 Aligned_cols=51 Identities=18% Similarity=0.053 Sum_probs=32.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.|+..+++..++.++..+-.-| + .|+++.-.-..-...++.+|++++.++.
T Consensus 76 ~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 76 WILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred hEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 4666666677776665442223 3 4555554455556677889999988864
No 493
>PRK06849 hypothetical protein; Provisional
Probab=46.99 E-value=2e+02 Score=25.29 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=25.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
+.+|++++.+.+..+|...+..|++++++-..
T Consensus 6 ~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 6 TVLITGARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56777777778888898888889988887544
No 494
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=46.89 E-value=1.1e+02 Score=27.90 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=36.7
Q ss_pred EeeCCChHHHHHHHHHHH-cCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Q 027405 74 IEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (224)
Q Consensus 74 v~~ssGN~~~alA~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~ 125 (224)
+..|+||+- ++-..-+. .+-.-+|++.+-+-..-++.++.+|++++.|+.+
T Consensus 127 iiit~G~t~-~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md 178 (472)
T KOG0634|consen 127 IIITNGNTD-GLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMD 178 (472)
T ss_pred EEEecCCch-HHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEecccc
Confidence 446677763 33333333 4777778888877788889999999999999864
No 495
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=46.85 E-value=36 Score=29.92 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=54.2
Q ss_pred EEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCChHH--HHHHHHHHHHhCC-CeEEeCCC-CCCcchHhHHHhHHHHHHHh
Q 027405 96 LIITMPASMSLERRMVLLAFGAELVLTDPARGMKG--AVQKAEEIRDKTP-NSYVLQQF-ENPANPKIHYETTGPEIWKG 171 (224)
Q Consensus 96 ~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~~~~~~~--~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~a~Ei~~q 171 (224)
..++...+.-..--+.++.+| ++.++... .+.. ..+...+..++.+ .+...+.. .+|. ... ..-+.++++.
T Consensus 2 ~~i~~G~g~l~~l~~~l~~~g-r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~--~~~-v~~~~~~~~~ 76 (366)
T PF00465_consen 2 TKIIFGRGALEELGEELKRLG-RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPT--LED-VDEAAEQARK 76 (366)
T ss_dssp SEEEESTTGGGGHHHHHHCTT-EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-B--HHH-HHHHHHHHHH
T ss_pred CcEEEccCHHHHHHHHHHhcC-CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCc--HHH-HHHHHHHHHh
Confidence 355666665445555677788 88777642 3332 3444444433432 22222211 2333 222 2233344444
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcC------------------CCcEEEEEeCCCC
Q 027405 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHN------------------PEIKLYGVEPVES 213 (224)
Q Consensus 172 ~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~------------------~~~~vigve~~~~ 213 (224)
. ++| .|+++|+|+.+ -+++++.... +..++|.|-...+
T Consensus 77 ~--~~D-~IIaiGGGS~~-D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 77 F--GAD-CIIAIGGGSVM-DAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp T--TSS-EEEEEESHHHH-HHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred c--CCC-EEEEcCCCCcC-cHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 3 577 67788887754 4455443221 1268888877543
No 496
>PRK10537 voltage-gated potassium channel; Provisional
Probab=46.68 E-value=2.2e+02 Score=25.58 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=25.4
Q ss_pred cEEEeeCCChHHHHHHHHHHHcCCeEEEEEcC
Q 027405 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (224)
Q Consensus 71 ~~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~ 102 (224)
..++....|+.|..++..-+..|.+++++.++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d 272 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 272 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence 45777888899998888777788888888754
No 497
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=46.56 E-value=86 Score=27.50 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHcCCeEEEEEc-CCC--CHHHHH----HHHhCCCEEEEeC
Q 027405 79 GNTGIGLAFMAAAKGYRLIITMP-ASM--SLERRM----VLLAFGAELVLTD 123 (224)
Q Consensus 79 GN~~~alA~~a~~~g~~~~ivvp-~~~--~~~~~~----~~~~~Ga~V~~~~ 123 (224)
+|.+.+++..+..+|++++++.| +.. +...+. .++..|.++..+.
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 58999999999999999999999 643 332232 2345688877665
No 498
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=46.39 E-value=1.5e+02 Score=26.10 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=12.0
Q ss_pred HHHHhhCCCCCEEEEccCchhHH
Q 027405 167 EIWKGTGGKIDALVSGIGTGGTV 189 (224)
Q Consensus 167 Ei~~q~~~~~d~iv~pvG~Gg~~ 189 (224)
+++++. ++| +|+++|+|+.+
T Consensus 71 ~~~~~~--~~D-~IIavGGGs~~ 90 (367)
T cd08182 71 RLLREF--GPD-AVLAVGGGSVL 90 (367)
T ss_pred HHHHhc--CcC-EEEEeCCcHHH
Confidence 444443 467 46788887654
No 499
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=46.36 E-value=2.5e+02 Score=26.08 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=68.7
Q ss_pred HHHHHHHcCCeEEEE-----------EcCCCCHHHHHHHHhCCCEEEEeCCC---CChH-HHHHHHHHHHHhCCCeE---
Q 027405 85 LAFMAAAKGYRLIIT-----------MPASMSLERRMVLLAFGAELVLTDPA---RGMK-GAVQKAEEIRDKTPNSY--- 146 (224)
Q Consensus 85 lA~~a~~~g~~~~iv-----------vp~~~~~~~~~~~~~~Ga~V~~~~~~---~~~~-~~~~~a~~~~~~~~~~~--- 146 (224)
+...|+.+|.++++- .|..+...-+...-..|++-+....+ +.|. ++.+...+.+++-+..+
T Consensus 264 ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (480)
T cd00288 264 LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHR 343 (480)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchh
Confidence 566799999988874 23333334444455568887766532 2332 44444444333221111
Q ss_pred --EeCCCCC---C-cchHhHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 027405 147 --VLQQFEN---P-ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212 (224)
Q Consensus 147 --~~~~~~~---~-~~~~~g~~t~a~Ei~~q~~~~~d~iv~pvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~ 212 (224)
|..+... . .+ .......+.++.+++ +.++||++.-+|.++--+ ....|.+.|+++.+..
T Consensus 344 ~~~~~~~~~~~~~~~~-~~aia~sAv~~A~~l--~akaIVv~T~SG~TA~~l----S~~RP~~pIiavT~~~ 408 (480)
T cd00288 344 VLFNEMRRLTPRPTST-TEAVAMSAVRAAFEL--GAKAIVVLTTSGRTARLV----SKYRPNAPIIAVTRNE 408 (480)
T ss_pred hhhhhhhcccccCCCh-HHHHHHHHHHHHHhc--CCCEEEEECCCcHHHHHH----HhhCCCCCEEEEcCCH
Confidence 1111000 1 11 233344556777776 578999999999986544 4456778999998875
No 500
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=46.23 E-value=1.4e+02 Score=25.86 Aligned_cols=52 Identities=15% Similarity=-0.031 Sum_probs=27.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Q 027405 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (224)
Q Consensus 72 ~vv~~ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~V~~~~~ 124 (224)
.|+..+++..+..+...+- .+-.-.|+++...-.......+.+|++++.++.
T Consensus 86 ~i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 137 (367)
T PRK02731 86 RIILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA 137 (367)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc
Confidence 3555555555544433322 222234555543333333445779999998875
Done!