RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027405
(224 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 434 bits (1119), Expect = e-156
Identities = 182/215 (84%), Positives = 199/215 (92%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA+G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
MKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VSGIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
T+TGAGKYLKE N +KLYGVEPVESA+LSGGKPG
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 436 bits (1122), Expect = e-155
Identities = 159/215 (73%), Positives = 190/215 (88%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA +V++LIGKTP+VYLN I GCVA IAAKLE+MEPC SVKDRIGYSM+ DAE+KG I
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AFGAELVLTDPA+G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK+D V+GIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
T+TG G+++KE NP+ ++ GVEP ES +LSGGKPG
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 430 bits (1107), Expect = e-154
Identities = 104/220 (47%), Positives = 153/220 (69%), Gaps = 1/220 (0%)
Query: 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEE 62
++ +A+ + +LIG+TP +YLN++ + A++ K+E P +SVKDR+G+++ AE+
Sbjct: 6 DKSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEK 64
Query: 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122
+G + PG+S+++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L FGAE++LT
Sbjct: 65 EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILT 124
Query: 123 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
A GMKGAV A++I PN+ + QF N IH ETTGPEIW+ T +D ++G
Sbjct: 125 PAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAG 184
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+GTGGT+TG + LK+ ++ VEP ES VLSGGKPG
Sbjct: 185 VGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPG 224
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 428 bits (1103), Expect = e-154
Identities = 122/215 (56%), Positives = 158/215 (73%), Gaps = 1/215 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+D+T+LIG+TPLV L R+ DG VA I AKLE P +SVKDRIG +M+ AE+ GLI+
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P ++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+GAEL+LT A G
Sbjct: 66 PD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK+D +V+G+GTGG
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
T+TG + +KE P + VEP S VLSGG+ G
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 412 bits (1062), Expect = e-148
Identities = 118/212 (55%), Positives = 155/212 (73%), Gaps = 2/212 (0%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG-E 70
V IGKTP+V L ++V+ +A + KLE + P S+KDR + MI DAEE+G++RPG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 130
V++EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL AFGAELVLTDP R M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
A ++A ++ + +++ QF+NPAN + HYETTGPE+++ G+IDA V G GTGGT+T
Sbjct: 123 AREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
G G+YLKE P +K+ VEP S VLSGGK G
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMG 213
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 407 bits (1048), Expect = e-145
Identities = 125/215 (58%), Positives = 158/215 (73%), Gaps = 2/215 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+TELIG TP V LNRIVD A + KLE M P SSVKDRI +MI AE+ G ++
Sbjct: 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG ++EPTSGNTGIGLA +AAAKGY+ ++ MP +MSLERR +L A+GAELVLT A+G
Sbjct: 64 PG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M+GA+ KAEE+ + ++ QQF+N ANP+IH TTG EI + G ++DA V+G+GTGG
Sbjct: 123 MRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
T+TGAGK L+E P IK+Y VEP +S VLSGGKPG
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPG 216
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 404 bits (1042), Expect = e-144
Identities = 109/217 (50%), Positives = 145/217 (66%), Gaps = 5/217 (2%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I D + IG TPLV L G + K+E P SVK RIG +M+ AE+ G +
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 60
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G +++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L G LVLT+ A+G
Sbjct: 61 KG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 128 MKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTG 186
MKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T GK+D +V+G+GTG
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 187 GTVTGAGKYLK-EHNPEIKLYGVEPVESAVLSGGKPG 222
G++TG + +K + +I VEPVES V+S G
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAG 216
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 404 bits (1040), Expect = e-144
Identities = 98/227 (43%), Positives = 138/227 (60%), Gaps = 7/227 (3%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCV----ARIAAKLEMMEPCSSVKDRIGYSM 56
+ + I ++ E IG TPLV L+ + + RI KLE P SSVKDR+G+++
Sbjct: 6 ISSPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNI 65
Query: 57 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG 116
+ A + G ++PG +IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AFG
Sbjct: 66 VYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFG 124
Query: 117 AELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGK 175
AEL+LT+ +GM GA+++ ++ + P Y QF NP N H+ T EIW+ T G+
Sbjct: 125 AELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGE 183
Query: 176 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
+D +VS +GT GTV G + LKE IK+ VEP ESAVL G G
Sbjct: 184 VDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 230
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 388 bits (999), Expect = e-138
Identities = 108/216 (50%), Positives = 141/216 (65%), Gaps = 9/216 (4%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+ LIG TP+V L+ I +RI KLE P SVKDR MI DAE++GL++
Sbjct: 10 HHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G ++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL GAELVLT G
Sbjct: 66 NG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELG 122
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
MKGAV+KA EI + +++L QFENP N H TTGPEI K +IDA V+G+GTGG
Sbjct: 123 MKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGG 181
Query: 188 TVTGAGKYLKEH-NPEIKLYGVEPVESAVLSGGKPG 222
T++G G+ LK +K+ VEP +S VLSGG+PG
Sbjct: 182 TISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPG 217
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 386 bits (995), Expect = e-137
Identities = 97/213 (45%), Positives = 135/213 (63%), Gaps = 2/213 (0%)
Query: 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGE 70
+ + IG TPLV L R+ + + KLE P SVKDR SMI +AE++G I+PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG- 61
Query: 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 130
VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+G
Sbjct: 62 DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
A A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+I VS +GT GT+T
Sbjct: 122 ARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGG 223
G ++++E + + + G++P E + + G +
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWP 213
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 362 bits (931), Expect = e-127
Identities = 88/214 (41%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 8 IAKDVTELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
+ + +G TPLV L R+ DG R+ AKLE P S+KDR MI A
Sbjct: 5 RYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQA 64
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
E GL+RPG + ++EPTSGNTGI LA A KGYRLI MP + S+ERR +L +GA+++
Sbjct: 65 EADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQII 123
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
+ G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +I V
Sbjct: 124 FSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFV 182
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 214
+G+GT GT+ G G++L+EH +K+ EP
Sbjct: 183 AGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE 216
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 343 bits (883), Expect = e-119
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 9/212 (4%)
Query: 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAEEKGLIRPG 69
D E TPLV + R+ KLE P S SVKDR +I+ + + G
Sbjct: 89 DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
S++ + TS N G+ L+ +A GYR + +P + +++ GA++++ A
Sbjct: 146 -SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK---GTGGKIDALVSGIGTG 186
+ + + K + QF N AN + H T EI+ G + + +GT
Sbjct: 205 HLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 187 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218
G ++ A YL+ +P I+ V+P + + G
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG 295
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 345 bits (887), Expect = e-118
Identities = 96/225 (42%), Positives = 131/225 (58%), Gaps = 11/225 (4%)
Query: 8 IAKDVTELIGKTPLVYLNRIV--DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I ++ E+IG TPLV LN I DG + AK E + P SVKDRIGY M+ DAEE+GL
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-- 123
++PG +IEPTSGNTGIGLA A KGY+ II MP MS E+ L GA+++ T
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 124 -PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
+G + A++++ +TPNS VL Q+ N NP HY+ T EI K+D +V
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPG 222
GT GT++G G+ +KE P ++ GV+P S + L+
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQ 273
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 340 bits (874), Expect = e-117
Identities = 97/225 (43%), Positives = 131/225 (58%), Gaps = 11/225 (4%)
Query: 8 IAKDVTELIGKTPLVYLNRIV--DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I D+ + IG TP+V +N+I G + AK E SVKDRI MI DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-- 123
++PG +IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A GAE+V T
Sbjct: 158 LKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 216
Query: 124 -PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
+ V A ++++ PNS++L Q+ N +NP HY+TT EI + GK+D LV+
Sbjct: 217 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPG 222
+GTGGT+TG + LKE P ++ GV+P S + L+ +
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQT 321
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 70.4 bits (173), Expect = 2e-14
Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 24/216 (11%)
Query: 17 GKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEP 76
G TPL+ + I K+E + P S KDR + DA G ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCA 91
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 135
++GNT A AA G + +P +++ + + GA+++ D ++ A
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFD--DCLELA 149
Query: 136 EEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAG 193
++ P ++ N NP +T EI G D +G G +T
Sbjct: 150 RKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205
Query: 194 KYLKE--------HNPEIKLYGVEPVESAVLSGGKP 221
K E P ++ G + +A L G+P
Sbjct: 206 KGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEP 239
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 69.4 bits (170), Expect = 5e-14
Identities = 33/184 (17%), Positives = 68/184 (36%), Gaps = 13/184 (7%)
Query: 17 GKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
G + L + R + + K + S KD +++ ++ +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
++G+T L+ A+ G I+ +PA +S+ + + +A GA ++ D G ++
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFD--GCMK 246
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKI-DALVSGIGTGGTVT 190
EI + P N N +T EI + ++ D ++ G G +
Sbjct: 247 LIREITAELPIYLA-----NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIY 301
Query: 191 GAGK 194
K
Sbjct: 302 AFYK 305
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 68.4 bits (168), Expect = 9e-14
Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 31/225 (13%)
Query: 2 VEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE 61
+ S L KTP+ + + K++ +P S K R
Sbjct: 30 MGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA 89
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
++G + ++GN G+ A+ A G I +P + L GA +
Sbjct: 90 KQGCAH-----FVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKV 144
Query: 122 TDPARGMKG-----AVQKAEEIRDKTPNSYVLQQFENP------ANPKIHYETTGPEIWK 170
G A + A+ + P + F++P A + E+ +
Sbjct: 145 V-------GELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHA-------SIVKELKE 190
Query: 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESA 214
K A+ +G GG + G + L+E ++ + +E +
Sbjct: 191 TLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAH 235
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 67.3 bits (165), Expect = 2e-13
Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 17/187 (9%)
Query: 17 GKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
G TPL+ + + G +I K E + P S KDR I+ A E G +I
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVI 83
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQ 133
++GNT A AA G R + +P ++ + + +GA+++ A+
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFD--DALN 141
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+I + P V N NP +T EI G D +G G +T
Sbjct: 142 IVRKIGENFPVEIV-----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITA 196
Query: 192 AGKYLKE 198
K K
Sbjct: 197 YWKGFKI 203
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 65.2 bits (159), Expect = 1e-12
Identities = 47/226 (20%), Positives = 76/226 (33%), Gaps = 30/226 (13%)
Query: 18 KTPLVYLNRIVDGC-VARIAAKLEMM--------------EPCSSVKDRIGYSMIADAEE 62
TPL L+ + + V +I K E + ++ + + E
Sbjct: 44 PTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFE 103
Query: 63 KGLIRPGESV-LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
GE + T GN G G+A+ A G +I MP + ER +L GAE ++
Sbjct: 104 HLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIV 163
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH------YETTGPEIW---KGT 172
TD V+ + + V+Q KI Y T E +
Sbjct: 164 TD--MNYDDTVRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREM 220
Query: 173 GGKIDALVSGIGTGGTVTGAGKYLKEH--NPEIKLYGVEPVESAVL 216
G ++ G G G YL + + VEP ++ +
Sbjct: 221 GVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCI 266
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 65.0 bits (159), Expect = 1e-12
Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 27/218 (12%)
Query: 17 GKTPLVYLN--RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
G TPL+ L R+ AK E + P S KDR ++ A E G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVA 81
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQ 133
++GNT A AA G I+ +PA +L + L GA +V + A++
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFD--DALR 139
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+++ + P + V N NP +T E+ G +G G +T
Sbjct: 140 LTQKLTEAFPVALV-----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194
Query: 192 AGKYLKE--------HNPEIKLYGVEPVESAVLSGGKP 221
K P ++ G + +A L G+P
Sbjct: 195 HWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRP 230
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 63.3 bits (154), Expect = 5e-12
Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 24/196 (12%)
Query: 32 VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91
V A KL + ++ D YS + E K + + ++GN G+ + M+A
Sbjct: 126 VLAHAEKLALEAGLLTLDD--DYSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSAR 181
Query: 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG----AVQKAEEIRDKTPNSYV 147
G+++ + M A ++ L + G +V + AV++ + PN
Sbjct: 182 IGFKVTVHMSADARAWKKAKLRSHGVTVVEYE------QDYGVAVEEGRKAAQSDPN-CF 234
Query: 148 LQQFENPANPKIHYETTGPEI--------WKGTGGKIDALVSGIGTGGTVTGAGKYLKEH 199
EN + Y G + + G GG G LK
Sbjct: 235 FIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLA 294
Query: 200 -NPEIKLYGVEPVESA 214
+ + EP S
Sbjct: 295 FGDHVHCFFAEPTHSP 310
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 62.2 bits (152), Expect = 9e-12
Identities = 45/212 (21%), Positives = 70/212 (33%), Gaps = 32/212 (15%)
Query: 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
TPL+ + + K E ++P S K R + +KG L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRH-----LV 58
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---- 130
+ GN GI A+ A G I +P S SL+ L GAE+ LT G
Sbjct: 59 CSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLT-------GKVWD 111
Query: 131 -AVQKAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPEIWKGTGGKIDALV-SG 182
A +A+E+ + V P H + E+ ALV +
Sbjct: 112 EANLRAQELAKRDGWENV--------PPFDHPLIWKGHASLVQELKAVLRTPPGALVLAV 163
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 214
G G L+ + + +E +
Sbjct: 164 GGGGLLAGVVAGLLEVGWQHVPIIAMETHGAH 195
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 61.0 bits (149), Expect = 3e-11
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 46/225 (20%)
Query: 9 AKDVTELIGKTPLVY---LNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE-EKG 64
+ + +TPL+ L+ ++ R+ K E ++ S K R S E KG
Sbjct: 11 FRRIAPYTHRTPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKG 67
Query: 65 LIRPGESVLIEPT--SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122
L+ SGN G+A+ A G + ++ MP S ++ A+GAE+V
Sbjct: 68 LL----------AVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDR 117
Query: 123 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIW--- 169
K + A ++++T Y L IH ++ T G E+
Sbjct: 118 GVTA--KNREEVARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQA 163
Query: 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 214
G A+++ +G GG + G +K +P + GVEP +
Sbjct: 164 GRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAAD 208
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 59.8 bits (146), Expect = 7e-11
Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 33/207 (15%)
Query: 16 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEEKGLIRPGESVL 73
KTP++ + + VA + K E + + K R + ++ + ++ + G +
Sbjct: 24 ANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR---KAG---V 77
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
+ +SGN +A A G I MP + +G ++++ D +
Sbjct: 78 LTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREK 135
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSGI 183
A+EI ++ + I Y+ T E+++ G +DAL +
Sbjct: 136 MAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVGP-LDALFVCL 182
Query: 184 GTGGTVTGAGKYLKEHNPEIKLYGVEP 210
G GG ++G+ + P ++YGVEP
Sbjct: 183 GGGGLLSGSALAARHFAPNCEVYGVEP 209
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 59.6 bits (145), Expect = 1e-10
Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 43/227 (18%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEE 62
++V+ V E TPL + ++ I K E +P S K R Y+M+A E+
Sbjct: 18 RAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQ 77
Query: 63 --KGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118
G+I T+ GN G+AF +A G + +I MP + + + + FG E
Sbjct: 78 KAHGVI----------TASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGE 127
Query: 119 LVLTDPARGMKG-----AVQKAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPE 167
++L G A KA E+ + ++V P H T E
Sbjct: 128 VLLH-------GANFDEAKAKAIELSQQQGFTWV--------PPFDHPMVIAGQGTLALE 172
Query: 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 214
+ + +D + +G GG G +K+ P+IK+ VE +SA
Sbjct: 173 LLQQDA-HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA 218
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 58.4 bits (142), Expect = 2e-10
Identities = 55/226 (24%), Positives = 89/226 (39%), Gaps = 41/226 (18%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEE 62
++A V ++ ++PL ++ D K E + S K R Y+M++ EE
Sbjct: 47 VDILASPVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREE 106
Query: 63 --KGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118
KG+I T+ GN G+A I MP + + + A G +
Sbjct: 107 LDKGVI----------TASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGD 156
Query: 119 LVLT----DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPEI 168
+VL D A+ A E+ +K Y+ F++P T G EI
Sbjct: 157 VVLYGKTFDEAQ------THALELSEKDGLKYI-PPFDDP-------GVIKGQGTIGTEI 202
Query: 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 214
+ I A+ +G GG + G + K+ P K+ GVEP +A
Sbjct: 203 NRQLK-DIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAA 247
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 57.6 bits (140), Expect = 4e-10
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 32/208 (15%)
Query: 16 IGKTPLVY---LNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESV 72
I TP++ LN++ + K E+ + S K R + + L R ++V
Sbjct: 23 IHLTPVLTSSILNQLTG---RNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAV 79
Query: 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 132
+ +SGN G L + A +G I +P + +++ + A+GA +V +P+ +
Sbjct: 80 -VTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRE 136
Query: 133 QKAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSG 182
A+ + ++T ++ +H + T E+ +DALV
Sbjct: 137 NVAKRVTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVPL-VDALVVP 183
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEP 210
+G GG + G +K P +K+Y EP
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKVYAAEP 211
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 57.2 bits (139), Expect = 5e-10
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 33/218 (15%)
Query: 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEEKGLI 66
K + I KT + N + C I K E M+ S K R ++ ++ EK
Sbjct: 31 KKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEK--- 87
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
R G ++ ++GN G++ A G + MP + + AE+VL
Sbjct: 88 RKG---VVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHG--D 142
Query: 127 GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKI 176
+ K EI + + I Y+ T G EI + +
Sbjct: 143 NFNDTIAKVSEIVETE--GRIF----------IPPYDDPKVIAGQGTIGLEIMEDLY-DV 189
Query: 177 DALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 214
D ++ IG GG + G +K NP IK+ GV+
Sbjct: 190 DNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVH 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 59/191 (30%)
Query: 52 IGYSMIADAEEKGLIRP---------GE-SVLIEPTSGNTGIGLAFMAAAK-----GYRL 96
+ + D + KGLI GE + L + + ++ + + G +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAAL----ASLADV-MSIESLVEVVFYRGMTM 1793
Query: 97 IITMPASMSLERRMVLLAFGAELVLTDPARGMKG----AVQK-AEEIRDKTPNSYVLQQF 151
+ +P ++A +P R A+Q E + +T ++++
Sbjct: 1794 QVAVPRDELGRSNYGMIA-------INPGRVAASFSQEALQYVVERVGKRT--GWLVE-- 1842
Query: 152 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKL------ 205
N Y + G + AL TVT ++K I +
Sbjct: 1843 --IVN----YNVENQQY--VAAGDLRAL-------DTVTNVLNFIKLQK--IDIIELQKS 1885
Query: 206 YGVEPVESAVL 216
+E VE +
Sbjct: 1886 LSLEEVEGHLF 1896
Score = 36.2 bits (83), Expect = 0.007
Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 78/192 (40%)
Query: 52 IG------YSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS 105
IG Y + A+ G PGE L G TG + A I + S
Sbjct: 241 IGVIQLAHY--VVTAKLLGF-TPGE--LRSYLKGATGHSQGLVTAV-----AIA--ETDS 288
Query: 106 LE------RRMVLLAF--GAELVLTDPARGMK-GAVQKAEEIRDKTPNSYVL-------Q 149
E R+ + + F G P + ++ + E + P S +L +
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQE 347
Query: 150 QFE------N---PANPKIHYETTGPEIWKGTGGKIDALVSG----IGTGGTVTGAGKYL 196
Q + N PA ++ I +LV+G + V+G
Sbjct: 348 QVQDYVNKTNSHLPAGKQVE-------I---------SLVNGAKNLV-----VSG----- 381
Query: 197 KEHNPEIKLYGV 208
P+ LYG+
Sbjct: 382 ---PPQ-SLYGL 389
Score = 30.0 bits (67), Expect = 0.80
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 36/123 (29%)
Query: 10 KDVTELI---GKT-----PLVYLNRIVDGCVA----RIAAKLEMMEPCSSVKDRIGYSMI 57
+ + E++ G T P L R G +A R+AA E V +R+
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVVERV----- 1833
Query: 58 ADAEEKGLI-------RPGESVLIEPTSGNTGIGL-AFMAAAKGYRL----IITMPASMS 105
+ G + + + +G+ L +L II + S+S
Sbjct: 1834 --GKRTGWLVEIVNYNVENQQYVA---AGDL-RALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 106 LER 108
LE
Sbjct: 1888 LEE 1890
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 34.7 bits (80), Expect = 0.017
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 66 IRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLI-ITMPASMSLERRMVLLAFGAELVLT 122
+ PG+ I+ G + +G + + I + E L GA V+T
Sbjct: 164 LTPGKDWFIQ-NGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVIT 222
Query: 123 DPARGMKGAVQKAEEIRDK 141
+ + +E +
Sbjct: 223 EDQNNSREFGPTIKEWIKQ 241
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 33.7 bits (77), Expect = 0.035
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 135 AEEIRDKTPNSYVL-QQFENPANPKIHY---ETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
E +R Y + + + + G K D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 191 GAGKYLKEHNPEIKLYGVEPVESA 214
G ++ GV+
Sbjct: 205 GMVVGFAADGRADRVIGVDASAKP 228
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 33.6 bits (77), Expect = 0.036
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 13/144 (9%)
Query: 54 YSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL 113
Y M+ + ++ G+ VLI SG G G + S ++ +
Sbjct: 207 YRMLVS-DRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV---VSSAQKEAAVR 262
Query: 114 AFGAELVLTDPARGMKGAVQK-AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK-- 170
A G +LV+ G+ + + + L + P I +E TG +
Sbjct: 263 ALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLS 322
Query: 171 ----GTGGKIDALVSGIGTGGTVT 190
GG + + G +G T
Sbjct: 323 VIVARRGGTV--VTCGSSSGYLHT 344
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 33.7 bits (78), Expect = 0.036
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLA--FMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
+K +RPG+ VL+ G+ +A +A G R+I T + S ++ A GA+
Sbjct: 160 DKLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVIAT---AGSEDKLRRAKALGADE 214
Query: 120 V 120
Sbjct: 215 T 215
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 31.4 bits (72), Expect = 0.19
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EKG +R G+ V+++ T G GL A A G +I+T S S E+ A GA+
Sbjct: 183 EKGHLRAGDRVVVQGTGGVALFGLQI-AKATGAEVIVT---SSSREKLDRAFALGADHG 237
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 30.2 bits (68), Expect = 0.53
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 54 YSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL 113
Y + G+ + G++VLI SG G A A G I S ++ +
Sbjct: 215 YRQLVSRNGAGM-KQGDNVLIWGASGGLGSYATQFALAGGANPICV---VSSPQKAEICR 270
Query: 114 AFGAELVL 121
A GAE ++
Sbjct: 271 AMGAEAII 278
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 29.8 bits (67), Expect = 0.88
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 115
+G ++PGESVLI SG+ G+G A +A A + + +R + F
Sbjct: 1661 VRGRMQPGESVLIH--SGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARF 1712
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 29.5 bits (67), Expect = 0.90
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
+G +R GE+VL+ +G GIG A +A G ++I + + + GA++
Sbjct: 153 RRGQLRAGETVLVLGAAG--GIGTAAIQIAKGMGAKVIAV--VN-RTAATEFVKSVGADI 207
Query: 120 VL 121
VL
Sbjct: 208 VL 209
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 29.1 bits (66), Expect = 1.0
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
++ GESVL+ SG G+GLA +A A G +++ T A + E + ++L GA
Sbjct: 164 HSACVKAGESVLVHGASG--GVGLAACQIARAYGLKILGT--AG-TEEGQKIVLQNGAHE 218
Query: 120 VL 121
V
Sbjct: 219 VF 220
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 29.1 bits (66), Expect = 1.2
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
+ + GESVLI + GIG +A A G + T A S + GA+
Sbjct: 161 QMAGLTEGESVLIHGGTS--GIGTTAIQLARAFGAEVYAT--AG-STGKCEACERLGAKR 215
Query: 120 V 120
Sbjct: 216 G 216
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 29.1 bits (66), Expect = 1.2
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
G ++ G+ VLI G+G A + G ++T A S ++ + GA
Sbjct: 156 LVGNVQAGDYVLIHAGLS--GVGTAAIQLTRMAGAIPLVT--AG-SQKKLQMAEKLGAAA 210
Query: 120 V 120
Sbjct: 211 G 211
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 28.9 bits (65), Expect = 1.3
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 58 ADAEEKGLIRPGESVLIEPTSGNTG---IGLAFMAAAKGY---RLIITMPASMSLERRMV 111
A G IRPG++V+I G IGLA +A K ++I++ S RR +
Sbjct: 203 AVIVRGGGIRPGDNVVI------LGGGPIGLAAVAILKHAGASKVILS---EPSEVRRNL 253
Query: 112 LLAFGAELVLTDPAR 126
GA+ V+ DP +
Sbjct: 254 AKELGADHVI-DPTK 267
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 28.4 bits (63), Expect = 2.0
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
E + +++ + N G L + G +L+ E+ +L A GA V
Sbjct: 165 ETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNI---VRKQEQADLLKAQGAVHVC 221
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 28.7 bits (63), Expect = 2.0
Identities = 3/26 (11%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 184 GTGGTVTGAGKYLKEHNPEIKLYGVE 209
G+G + P +++ +
Sbjct: 331 GSGNLLATVSAGFNNVMPR-QIWAND 355
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 28.3 bits (64), Expect = 2.0
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
++ RPGE VL++ +G +G A +A A G R++ AS E+ + LA GAE
Sbjct: 119 KRAQARPGEKVLVQAAAG--ALGTAAVQVARAMGLRVLAA--AS-RPEKLALPLALGAEE 173
Query: 120 VL 121
Sbjct: 174 AA 175
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 28.3 bits (64), Expect = 2.1
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 30/82 (36%)
Query: 63 KGLIRPGESVLIE-PT-------------------SGNTGI---GLAFMAAAKGYRLIIT 99
K + G VL+E P+ +G G L + + R +
Sbjct: 109 KVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYL 168
Query: 100 MP-------ASMSLERRMVLLA 114
+P L R LL
Sbjct: 169 IPSFQNPTGGLTPLPARKRLLQ 190
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 28.2 bits (63), Expect = 2.1
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 72 VLIEPTSGNTGIGLAF--MAAAKGYRLIITM--PASMSLERRMVLLAFGA---------E 118
+LI T ++G G A G+R+ +M + + F E
Sbjct: 8 ILI--TGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLE 65
Query: 119 LVLTDPARGMKGAVQKAEE 137
L + + A+ +
Sbjct: 66 LDVQSQVS-VDRAIDQIIG 83
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 27.5 bits (62), Expect = 2.7
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAK--GYRLIITMPASMSLERRMVLLAFGAE 118
+ PGE VLI +G G+G+A ++ AK G R+ T A S +R +L G E
Sbjct: 36 LSPGERVLIHSATG--GVGMAAVSIAKMIGARIYTT--AG-SDAKREMLSRLGVE 85
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 28.0 bits (63), Expect = 2.8
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
I+P E L +G G+ A A G +LI T + ++ L GA V+
Sbjct: 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGT--VG-TAQKAQSALKAGAWQVI 190
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.9
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 196 LKEHNPEIKLYGVEPVESA 214
LK+ +KLY +SA
Sbjct: 22 LKKLQASLKLY--AD-DSA 37
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 27.1 bits (59), Expect = 4.1
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 32 VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSG 79
V +A L + + + + D +RPG+S+L++ +G
Sbjct: 185 VVWLADPLIAEDLPDGLPEALN-----DDTRPRKLRPGDSLLVDTKAG 227
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 27.2 bits (61), Expect = 4.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
++PGE +L +G G A A G +LI T S S E+ A GA +
Sbjct: 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGT--VS-SPEKAAHAKALGAWETI 190
>2ekd_A Hypothetical protein PH0250; NPPSFA, national project on protein
structural and functiona analyses; 2.30A {Pyrococcus
horikoshii}
Length = 207
Score = 26.8 bits (59), Expect = 5.0
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 66 IRPGESVLIE-PTSGNTGIGLAFMAAAKGYRLII 98
R GE+VL+E + + L ++ +++
Sbjct: 12 FRVGETVLVEYSGTSRAELLLYYIVNNSKLPIVV 45
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 26.8 bits (59), Expect = 5.3
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 77 TSGNTGIGLAFMA--AAKGYRLIIT 99
T GN GIG ++ G +++T
Sbjct: 18 TGGNKGIGFEICKQLSSNGIMVVLT 42
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 26.6 bits (59), Expect = 6.6
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 26/75 (34%)
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT--DPARGMKGAVQK 134
T GN GIGL A + L R F ++VLT D RG AV
Sbjct: 10 TGGNKGIGL---AIVRD------------LCRL-----FSGDVVLTARDVTRGQA-AV-- 46
Query: 135 AEEIRDKTPNSYVLQ 149
++++ + + Q
Sbjct: 47 -QQLQAEGLSPRFHQ 60
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 26.4 bits (59), Expect = 7.6
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
++PG+ VLI +G G + A G +I T S + E+ G +
Sbjct: 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGT--VS-TEEKAETARKLGCHHTI 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.383
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,565,138
Number of extensions: 227845
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 84
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.9 bits)