RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027405
(224 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 189 bits (480), Expect = 4e-60
Identities = 183/217 (84%), Positives = 200/217 (92%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGL
Sbjct: 1 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 60
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 61 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 120
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VSGIGT
Sbjct: 121 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 180
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG 222
GGT+TGAGKYLKE N +KLYGVEPVESA+LSGGKPG
Sbjct: 181 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 217
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 158 bits (401), Expect = 2e-48
Identities = 108/219 (49%), Positives = 143/219 (65%), Gaps = 5/219 (2%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I D + IG TPLV L + K+E P SVK RIG +M+ AE+ G +
Sbjct: 2 IYADNSYSIGNTPLVRLKHFGHNG--NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 59
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G +++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L G LVLT+ A+G
Sbjct: 60 KG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 118
Query: 128 MKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTG 186
MKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T GK+D +V+G+GTG
Sbjct: 119 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 178
Query: 187 GTVTGAGKYLKE-HNPEIKLYGVEPVESAVLSGGKPGGL 224
G++TG + +K +I VEPVES V+S G
Sbjct: 179 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEE 217
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 157 bits (398), Expect = 5e-48
Identities = 109/215 (50%), Positives = 142/215 (66%), Gaps = 9/215 (4%)
Query: 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG 69
+ LIG TP+V L+ I +RI KLE P SVKDR MI DAE++GL++ G
Sbjct: 2 HMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 57
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL GAELVLT GMK
Sbjct: 58 ---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMK 114
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV 189
GAV+KA EI +T +++L QFENP N H TTGPEI K +IDA V+G+GTGGT+
Sbjct: 115 GAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTI 173
Query: 190 TGAGKYLKEHNPE-IKLYGVEPVESAVLSGGKPGG 223
+G G+ LK +K+ VEP +S VLSGG+PG
Sbjct: 174 SGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGK 208
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 158 bits (400), Expect = 1e-47
Identities = 95/214 (44%), Positives = 127/214 (59%), Gaps = 6/214 (2%)
Query: 8 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I D+ + IG TP+V +N+I G + AK E SVKDRI MI DAE G
Sbjct: 34 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 93
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++P +IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A GAE+V T
Sbjct: 94 LKP-GDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 152
Query: 126 RGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
+ V A ++++ PNS++L Q+ N +NP HY+TT EI + GK+D LV+
Sbjct: 153 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 212
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216
+GTGGT+TG + LKE P ++ GV+P S +
Sbjct: 213 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILA 246
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 153 bits (388), Expect = 2e-46
Identities = 118/213 (55%), Positives = 156/213 (73%), Gaps = 2/213 (0%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG-E 70
V IGKTP+V L ++V+ +A + KLE + P S+KDR + MI DAEE+G++RPG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 130
V++EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL AFGAELVLTDP R M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
A ++A ++++ +++ QF+NPAN + HYETTGPE+++ G+IDA V G GTGGT+T
Sbjct: 123 AREEALRLKEE-LGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGG 223
G G+YLKE P +K+ VEP S VLSGGK G
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQ 214
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 147 bits (370), Expect = 8e-44
Identities = 114/218 (52%), Positives = 153/218 (70%), Gaps = 7/218 (3%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S I +D + IG TPLV LNRI + RI AK+E P SVK RIG +MI DAE++G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGN---GRILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG L+EPT+GNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A
Sbjct: 58 LKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 126 RGMKGAVQKAEEIRDKT-PNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIG 184
+GMKGA+QKAEEI +LQQF NPANP+IH +TTGPEIW+ T G++D +SG+G
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 185 TGGTVTGAGKY--LKEHNPEIKLYGVEPVESAVLSGGK 220
TGGT+TG +Y + ++ VEP +S V++
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQAL 214
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 135 bits (339), Expect = 2e-39
Identities = 93/210 (44%), Positives = 131/210 (62%), Gaps = 2/210 (0%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
+ + IG TPLV L R+ + + KLE P SVKDR SMI +AE++G I+PG+
Sbjct: 3 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 62
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 131
+ IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 63 L-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 121
Query: 132 VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+ +L QF NP NP HY TTGPEIW+ TGG+I VS +GT GT+TG
Sbjct: 122 -RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 180
Query: 192 AGKYLKEHNPEIKLYGVEPVESAVLSGGKP 221
++++E + + + G++P E + + G +
Sbjct: 181 VSRFMREQSKPVTIVGLQPEEGSSIPGIRR 210
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 118 bits (296), Expect = 4e-32
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 11/218 (5%)
Query: 11 DVTELIGKTPLVYLNRIV-DGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAEEKGLIRP 68
D E TPLV + +G R+ KLE P S SVKDR +I+ + +
Sbjct: 88 DFFERGKPTPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEK 143
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM 128
G S++ + TS N G+ L+ +A GYR + +P + +++ GA++++ A
Sbjct: 144 G-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPST 202
Query: 129 KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK---GTGGKIDALVSGIGT 185
+ + K + QF N AN + H T EI+ G + + +GT
Sbjct: 203 VHLLPR-VMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGT 261
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGG 223
G ++ A YL+ +P I+ V+P + + G +
Sbjct: 262 SGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVE 299
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 113 bits (283), Expect = 9e-31
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 9/219 (4%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKG 64
++V+ V E TPL + ++ I K E +P S K R Y+M+A E+
Sbjct: 14 RAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQ 73
Query: 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124
+I ++GN G+AF +A G + +I MP + + + + FG E++L
Sbjct: 74 KAHG----VITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA 129
Query: 125 ARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIG 184
A + + F++P I + T +D + +G
Sbjct: 130 NFDEAKAKAIELSQQ---QGFTWVPPFDHP--MVIAGQGTLALELLQQDAHLDRVFVPVG 184
Query: 185 TGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGG 223
GG G +K+ P+IK+ VE +SA L G
Sbjct: 185 GGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAG 223
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 99.2 bits (246), Expect = 2e-25
Identities = 37/199 (18%), Positives = 86/199 (43%), Gaps = 9/199 (4%)
Query: 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRP 68
++ + + KTP++ + + VA + K E + + K R + ++
Sbjct: 12 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN----EAQ 67
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM 128
++ ++ +SGN +A A G I MP + +G ++++ D +
Sbjct: 68 RKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDD 127
Query: 129 KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGT 188
+ + A+EI ++ + + +++P + T E+++ G +DAL +G GG
Sbjct: 128 R--EKMAKEISEREGLTII-PPYDHP-HVLAGQGTAAKELFE-EVGPLDALFVCLGGGGL 182
Query: 189 VTGAGKYLKEHNPEIKLYG 207
++G+ + P ++YG
Sbjct: 183 LSGSALAARHFAPNCEVYG 201
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 93.2 bits (230), Expect = 4e-23
Identities = 39/227 (17%), Positives = 63/227 (27%), Gaps = 23/227 (10%)
Query: 12 VTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSV---KDRIGYSMIADAEEKGLI 66
G TP+ L R+ G + AK E + K R +I +A +G
Sbjct: 9 YPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD 68
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR----------MVLLAFG 116
V I N +A +AA G + ++ ++ +L
Sbjct: 69 TL---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGAD 125
Query: 117 AELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW-----KG 171
LV G + + + A E +P G
Sbjct: 126 VRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAE 185
Query: 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG 218
G K D +V TG T G ++ GV+ +
Sbjct: 186 LGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTR 232
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 86.6 bits (213), Expect = 7e-21
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 12/208 (5%)
Query: 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRP 68
+ + +TPL+ + R+ K E ++ S K R S E
Sbjct: 10 FRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENP----- 64
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM 128
L+ +SGN G+A+ A G + ++ MP S ++ A+GAE+V
Sbjct: 65 --KGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKN 122
Query: 129 KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW--KGTGGKIDALVSGIGTG 186
+ V +A + ++ F++P + G A+++ +G G
Sbjct: 123 REEVARA---LQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGG 179
Query: 187 GTVTGAGKYLKEHNPEIKLYGVEPVESA 214
G + G +K +P + GVEP +
Sbjct: 180 GLLAGLATAVKALSPTTLVLGVEPEAAD 207
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 85.1 bits (209), Expect = 6e-20
Identities = 24/192 (12%), Positives = 55/192 (28%), Gaps = 5/192 (2%)
Query: 12 VTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG 69
V+ G + L + R + + K + S KD +++ ++
Sbjct: 115 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 174
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
+ ++G+T L+ A+ G I+ +PA+ ++ +
Sbjct: 175 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SMAQLVQPIANGAFVLSIDTDFD 233
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV 189
G ++ L N + + + D ++ G G +
Sbjct: 234 GCMKLI--REITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNI 291
Query: 190 TGAGKYLKEHNP 201
K K
Sbjct: 292 YAFYKGFKMCQE 303
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 83.6 bits (205), Expect = 1e-19
Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 9/219 (4%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMM--EPCSSVKDRIGYSMIADAEEKGLIRPG 69
V + +TP+ YL I A + K + + K R ++ DA KG
Sbjct: 15 VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVV- 73
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
+ + N A G I+ + L+ +L A+
Sbjct: 74 --ITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSF 131
Query: 130 GAVQKAEEIRD----KTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 185
++ AEEI + + YV+ + Y EI + K D++V G+
Sbjct: 132 ELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGS 191
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGGL 224
GGT+ G L N +I+ G+ + K L
Sbjct: 192 GGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNL 230
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 82.4 bits (202), Expect = 3e-19
Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 26/235 (11%)
Query: 12 VTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSV---KDRIGYSMIADAEEKGLI 66
G +P+ LNR+ G + AK E + K R ++ D E
Sbjct: 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT 68
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
V I N +A +AA G + ++ + + + +
Sbjct: 69 HL---VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIM 125
Query: 127 GMKG---------------AVQKAEEIRDKTPNSYVLQQFENPANPKIHY---ETTGPEI 168
G A E + + +
Sbjct: 126 GADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQ 185
Query: 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGG 223
G K D +V TG T G + ++ + + ++ ++ + +
Sbjct: 186 EVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLR 240
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 81.1 bits (199), Expect = 1e-18
Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 18/220 (8%)
Query: 19 TPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPT 77
TPL Y R+ + A+I K E + + K A+ G R ++ E
Sbjct: 51 TPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTR----LIAETG 106
Query: 78 SGNTGIGLAFMAAAKGYRLIITMPA---SMSLERRMVLLAFGAELVLTDP-ARGMKGAVQ 133
+G G+ A A G ++ I M A + GA ++ + +R +K A+
Sbjct: 107 AGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAIN 166
Query: 134 KAEEIRDKTP------NSYVLQQFENPANPKIHYETTGPEI---WKGTGGKIDALVSGIG 184
+A T V+ P + G E G++ ++
Sbjct: 167 EALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACV 226
Query: 185 TGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGGL 224
GG+ Y ++ ++KL GVE + SG L
Sbjct: 227 GGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASL 266
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 75.6 bits (184), Expect = 6e-17
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 8/187 (4%)
Query: 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
L KTP+ + + K++ +P S K R ++G +
Sbjct: 4 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAH-----FV 58
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
++GN G+ A+ A G I +P + L GA + +
Sbjct: 59 CSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAF--EL 116
Query: 135 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGK 194
A+ + P + F++P + H K A+ +G GG + G +
Sbjct: 117 AKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKET-LWEKPGAIALSVGGGGLLCGVVQ 175
Query: 195 YLKEHNP 201
L+E
Sbjct: 176 GLQECGW 182
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 70.9 bits (172), Expect = 4e-15
Identities = 40/221 (18%), Positives = 66/221 (29%), Gaps = 17/221 (7%)
Query: 12 VTELIGKTPLVYLNRIV--DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG 69
++ L G TPL+ L R+ AK E + P S KDR ++ A E G
Sbjct: 22 ISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAV- 80
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
++GNT A AA G I+ +PA ++ ++
Sbjct: 81 ----ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDD 136
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV 189
+ + +T E+ G +G G +
Sbjct: 137 ALRLTQKLTEAFPVA----LVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNI 192
Query: 190 TGAGKYLKE------HNPEIKLYGVEPVESAVLSGGKPGGL 224
T K ++ G + +A L G+P
Sbjct: 193 TAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVER 233
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 70.7 bits (172), Expect = 6e-15
Identities = 40/216 (18%), Positives = 63/216 (29%), Gaps = 21/216 (9%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTS 78
T L I G + K E + + K A+ G E +
Sbjct: 56 TALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEII----AETGA 111
Query: 79 GNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARGMKGAVQKA 135
G G+ A +A G + I M A + GAE++ G
Sbjct: 112 GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS--GSATLKDAC 169
Query: 136 -EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG-----------GKIDALVSGI 183
E +RD + + A Y T E + G G++ V
Sbjct: 170 NEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIAC 229
Query: 184 GTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGG 219
GG+ ++ + L GVEP + +G
Sbjct: 230 VGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGE 265
>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus
subtilis [TaxId: 1423]}
Length = 167
Score = 30.7 bits (68), Expect = 0.088
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL 112
E+ GL SVL+ +G G M +GY ++ + + + L
Sbjct: 16 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL 67
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st
ketoreductase module {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 259
Score = 28.8 bits (63), Expect = 0.44
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 67 RPGESVLIEPTSGNTGIGLAF--MAAAKGYRLII 98
+P +VL+ T G G+G A +G ++
Sbjct: 7 KPTGTVLV--TGGTGGVGGQIARWLARRGAPHLL 38
>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 27.6 bits (60), Expect = 1.0
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 53 GYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL 112
GY + + PG + G + A R+I ++ ++
Sbjct: 16 GYGAAVNT---AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD---INKDKFARA 69
Query: 113 LAFG 116
FG
Sbjct: 70 KEFG 73
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4
12-hydroxydehydrogenase/prostaglandin 15-keto reductase
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 182
Score = 26.9 bits (58), Expect = 1.6
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITM 100
E ++ GE+VL+ +G G + +A KG +++
Sbjct: 22 LEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAA 61
>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus
callarias) [TaxId: 8053]}
Length = 175
Score = 26.9 bits (58), Expect = 1.6
Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 11/155 (7%)
Query: 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
A + PG + + + +A R+I ++ ++ FGA
Sbjct: 20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD---LNPDKFEKAKVFGATD 76
Query: 120 VLT-------DPARGMKGAVQKAEEIRDKTPNSYVLQQ-FENPANPKIHYETTGPEIWKG 171
+ K + + N V++ E+ G
Sbjct: 77 FVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHD 136
Query: 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLY 206
+ L++G G++ G K +K Y
Sbjct: 137 VATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAY 171
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas
putida [TaxId: 303]}
Length = 195
Score = 26.0 bits (56), Expect = 3.1
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 10/142 (7%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
+ PG +V + +G +GLA A+A+ + + ++ R A G E+
Sbjct: 19 VTAGVGPGSTVYV---AGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIAD 75
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVS 181
+ E+I V + + +++L+
Sbjct: 76 LSLDTPL------HEQIAALLGEPEVDCAVDAVGFEA-RGHGHEGAKHEAPATVLNSLMQ 128
Query: 182 GIGTGGTVTGAGKYLKEHNPEI 203
G + G Y+ E +
Sbjct: 129 VTRVAGKIGIPGLYVTEDPGAV 150
>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol
dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}
Length = 174
Score = 26.0 bits (56), Expect = 3.1
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG 116
E I G SV++ G +GL +A AK + +G
Sbjct: 19 GAELADIEMGSSVVV---IGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYG 72
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 181
Score = 25.8 bits (56), Expect = 4.0
Identities = 7/71 (9%), Positives = 20/71 (28%)
Query: 138 IRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLK 197
+R + + + + G + + TGGT+ A + +
Sbjct: 81 LRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCE 140
Query: 198 EHNPEIKLYGV 208
+ + +
Sbjct: 141 TAGVKPENIYI 151
>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 252
Score = 25.8 bits (56), Expect = 4.4
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 77 TSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA--RGMKGAV 132
T+ G+ + G+ + S +++ L AF P + +
Sbjct: 6 TNVKHFGGMGSALRLSEAGHTVACH---DESFKQKDELEAFAETYPQLKPMSEQEPAELI 62
Query: 133 QKAEE 137
+
Sbjct: 63 EAVTS 67
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus
musculus), class II [TaxId: 10090]}
Length = 174
Score = 25.7 bits (55), Expect = 4.5
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG 116
A + PG + + G +GL+ + K + ++ E+ A G
Sbjct: 20 AINTAKVTPGSTCAV---FGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 73
>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 236
Score = 25.6 bits (55), Expect = 4.5
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 4/33 (12%)
Query: 69 GESVLIEPTSGNTGIGLAF--MAAAKGYRLIIT 99
VL+ G +G A+ + +
Sbjct: 2 ARRVLV--YGGRGALGSRCVQAFRARNWWVASI 32
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase
(TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 273
Score = 25.8 bits (56), Expect = 4.9
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 108 RRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 141
+ + L D + + A+ + +K
Sbjct: 215 AEFIKINTAVALFALDRVGDFREGYEYADHLIEK 248
>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 269
Score = 25.5 bits (55), Expect = 5.5
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 69 GESVLIEPTSGNTGIGLAF--MAAAKGYRLIIT 99
G+ V++ T + GIG A G +++T
Sbjct: 14 GKKVIV--TGASKGIGREMAYHLAKMGAHVVVT 44
>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 235
Score = 25.2 bits (54), Expect = 5.9
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 72 VLIEPTSGNTGIGLAF--MAAAKGYRLIIT 99
V++ G +G A GY ++
Sbjct: 5 VIV--YGGKGALGSAILEFFKKNGYTVLNI 32
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus
caballus) [TaxId: 9796]}
Length = 176
Score = 25.0 bits (53), Expect = 7.1
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG 116
+ + G + + G + AA R+I ++ ++ G
Sbjct: 22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD---INKDKFAKAKEVG 73
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 124
Score = 24.5 bits (53), Expect = 7.4
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 180 VSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217
+ G+GTG T L +I+ S
Sbjct: 1 IVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKL 38
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 25.2 bits (54), Expect = 7.7
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 3/93 (3%)
Query: 78 SGNTGIGLAFMAAAKGYR--LIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 135
SG G A A GY + ++ R + + L + PA +++
Sbjct: 45 SGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAE 104
Query: 136 EEIRDKTPNSY-VLQQFENPANPKIHYETTGPE 167
E + Q+ + TT +
Sbjct: 105 ENALPGFAEALRSYQEAAAAGTFLVVEFTTLAD 137
>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI
{Human (Homo sapiens) [TaxId: 9606]}
Length = 244
Score = 24.9 bits (54), Expect = 7.9
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 69 GESVLIEPTSGNTGIGLAF--MAAAKGYRLIIT 99
GE VLI T GIG A +L++
Sbjct: 7 GEIVLI--TGAGHGIGRLTAYEFAKLKSKLVLW 37
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 24.5 bits (52), Expect = 8.3
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 53 GYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM 104
G +++D E IRPG +L+ G G + +T+
Sbjct: 2 GVGLLSDLERLSFIRPGLRILL---IGAGGASRGVLLPLLSLDCAVTITNRT 50
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 329
Score = 24.9 bits (54), Expect = 9.5
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 54 YSMIADAEEKGLIRPGESVLIE 75
Y+M A + G + ESV++E
Sbjct: 283 YAMHMGAIQNGWLA--ESVILE 302
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.383
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 831,203
Number of extensions: 38964
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 43
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.2 bits)