Query 027408
Match_columns 223
No_of_seqs 307 out of 2076
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03139 formate dehydrogenase 100.0 1.6E-56 3.4E-61 396.1 24.5 223 1-223 164-386 (386)
2 COG0111 SerA Phosphoglycerate 100.0 9.4E-57 2E-61 390.2 22.5 203 1-206 109-311 (324)
3 PRK07574 formate dehydrogenase 100.0 4.3E-55 9.3E-60 387.1 24.2 223 1-223 157-383 (385)
4 PRK15409 bifunctional glyoxyla 100.0 7.4E-54 1.6E-58 373.0 23.6 210 1-214 109-320 (323)
5 COG1052 LdhA Lactate dehydroge 100.0 3.4E-53 7.3E-58 367.7 22.5 204 1-206 109-317 (324)
6 PRK06487 glycerate dehydrogena 100.0 6.6E-53 1.4E-57 366.6 22.7 201 1-208 109-315 (317)
7 PRK08410 2-hydroxyacid dehydro 100.0 1.5E-52 3.3E-57 363.4 22.5 199 1-205 106-311 (311)
8 PRK06932 glycerate dehydrogena 100.0 1.5E-51 3.2E-56 357.5 21.8 199 1-205 108-314 (314)
9 PRK13243 glyoxylate reductase; 100.0 5.4E-51 1.2E-55 356.7 22.6 208 1-213 110-322 (333)
10 PLN02928 oxidoreductase family 100.0 7.8E-51 1.7E-55 357.3 23.1 202 1-207 128-341 (347)
11 PLN02306 hydroxypyruvate reduc 100.0 1.4E-50 3E-55 359.0 23.1 209 1-210 129-354 (386)
12 PRK11790 D-3-phosphoglycerate 100.0 1.4E-50 2.9E-55 362.5 23.0 204 1-210 118-326 (409)
13 PRK15469 ghrA bifunctional gly 100.0 1.7E-50 3.8E-55 350.3 21.4 208 1-218 105-312 (312)
14 PF02826 2-Hacid_dh_C: D-isome 100.0 5.8E-51 1.3E-55 327.6 13.1 177 1-179 2-178 (178)
15 TIGR01327 PGDH D-3-phosphoglyc 100.0 1.2E-49 2.6E-54 366.6 23.1 209 1-213 105-314 (525)
16 KOG0068 D-3-phosphoglycerate d 100.0 3.4E-50 7.3E-55 340.6 15.2 207 1-211 113-321 (406)
17 PRK13581 D-3-phosphoglycerate 100.0 4.6E-49 9.9E-54 362.9 22.2 208 1-213 107-315 (526)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 2.9E-48 6.2E-53 334.3 20.0 207 1-209 127-334 (336)
19 PRK06436 glycerate dehydrogena 100.0 8.7E-48 1.9E-52 331.9 22.7 200 1-216 91-292 (303)
20 PRK12480 D-lactate dehydrogena 100.0 1.5E-47 3.2E-52 334.4 20.3 201 1-206 112-325 (330)
21 PRK08605 D-lactate dehydrogena 100.0 1.2E-45 2.6E-50 323.0 21.9 202 1-206 112-327 (332)
22 PRK15438 erythronate-4-phospha 100.0 2.2E-42 4.7E-47 305.0 19.1 167 31-205 111-281 (378)
23 PRK00257 erythronate-4-phospha 100.0 4.3E-42 9.2E-47 303.9 19.7 168 31-205 111-282 (381)
24 KOG0067 Transcription factor C 99.9 7.1E-25 1.5E-29 188.4 8.2 206 2-215 139-351 (435)
25 PTZ00075 Adenosylhomocysteinas 99.8 1.7E-18 3.6E-23 156.2 13.3 124 31-166 249-372 (476)
26 PLN02494 adenosylhomocysteinas 99.7 3.7E-17 8E-22 147.2 10.9 121 32-158 250-373 (477)
27 TIGR00936 ahcY adenosylhomocys 99.7 7.3E-16 1.6E-20 137.6 12.3 120 33-157 192-312 (406)
28 PRK13403 ketol-acid reductoiso 99.6 9.8E-16 2.1E-20 132.1 9.8 93 32-126 12-104 (335)
29 PF03446 NAD_binding_2: NAD bi 99.6 9E-16 1.9E-20 121.5 7.0 120 37-156 2-122 (163)
30 COG2084 MmsB 3-hydroxyisobutyr 99.6 6E-15 1.3E-19 125.9 10.8 125 37-161 1-128 (286)
31 PRK11559 garR tartronate semia 99.5 3.9E-14 8.4E-19 122.1 10.7 123 37-159 3-127 (296)
32 TIGR01505 tartro_sem_red 2-hyd 99.5 2.8E-14 6.1E-19 122.8 9.3 118 38-155 1-120 (291)
33 PRK12490 6-phosphogluconate de 99.5 1.7E-13 3.8E-18 118.5 11.6 114 37-153 1-117 (299)
34 PRK15461 NADH-dependent gamma- 99.5 1.7E-13 3.7E-18 118.4 10.7 121 37-157 2-124 (296)
35 PF00670 AdoHcyase_NAD: S-aden 99.5 1.8E-13 3.9E-18 107.3 9.1 104 32-140 19-123 (162)
36 TIGR02853 spore_dpaA dipicolin 99.5 3E-13 6.4E-18 116.4 9.6 96 31-131 146-243 (287)
37 PRK09599 6-phosphogluconate de 99.4 7.1E-13 1.5E-17 114.7 11.4 113 37-150 1-116 (301)
38 PLN02350 phosphogluconate dehy 99.4 6.1E-13 1.3E-17 121.8 10.4 124 37-161 7-140 (493)
39 PRK05476 S-adenosyl-L-homocyst 99.4 1.4E-12 3E-17 117.3 12.0 104 32-140 208-312 (425)
40 PLN02256 arogenate dehydrogena 99.4 5.7E-12 1.2E-16 109.2 14.1 109 33-144 33-143 (304)
41 PRK15059 tartronate semialdehy 99.4 2.5E-12 5.4E-17 111.0 10.3 119 37-156 1-121 (292)
42 TIGR00872 gnd_rel 6-phosphoglu 99.4 5.6E-12 1.2E-16 109.1 11.8 118 37-156 1-121 (298)
43 PRK05479 ketol-acid reductoiso 99.4 2.9E-12 6.3E-17 111.7 9.6 96 32-130 13-109 (330)
44 cd00401 AdoHcyase S-adenosyl-L 99.4 7E-12 1.5E-16 112.4 12.1 105 31-140 197-302 (413)
45 PLN02712 arogenate dehydrogena 99.3 7.3E-12 1.6E-16 118.8 11.6 115 29-145 362-477 (667)
46 PTZ00142 6-phosphogluconate de 99.3 5.3E-12 1.1E-16 115.3 10.1 122 37-159 2-132 (470)
47 PRK08306 dipicolinate synthase 99.3 1.1E-11 2.5E-16 107.1 10.0 95 32-131 148-244 (296)
48 TIGR01692 HIBADH 3-hydroxyisob 99.3 8.5E-12 1.8E-16 107.4 8.9 116 41-156 1-118 (288)
49 PRK07502 cyclohexadienyl dehyd 99.3 5.3E-11 1.2E-15 103.2 13.2 149 35-187 5-161 (307)
50 PLN02858 fructose-bisphosphate 99.3 1.4E-11 3E-16 124.6 10.5 123 35-157 3-129 (1378)
51 TIGR00873 gnd 6-phosphoglucona 99.3 2E-11 4.3E-16 111.5 9.9 121 38-159 1-129 (467)
52 PRK08655 prephenate dehydrogen 99.3 1.1E-10 2.4E-15 106.0 14.6 134 37-178 1-137 (437)
53 PLN02858 fructose-bisphosphate 99.3 3.3E-11 7.2E-16 121.9 11.6 123 35-157 323-449 (1378)
54 PF03807 F420_oxidored: NADP o 99.3 1E-11 2.2E-16 89.3 5.8 90 38-130 1-96 (96)
55 KOG0409 Predicted dehydrogenas 99.2 2.5E-11 5.3E-16 103.0 8.4 127 33-159 32-161 (327)
56 PRK07417 arogenate dehydrogena 99.2 1.8E-10 4E-15 98.7 13.1 143 37-186 1-148 (279)
57 PF07991 IlvN: Acetohydroxy ac 99.2 4.2E-11 9.2E-16 93.7 8.0 89 34-125 2-92 (165)
58 TIGR00465 ilvC ketol-acid redu 99.2 9E-11 2E-15 102.1 9.9 97 34-133 1-98 (314)
59 PRK05225 ketol-acid reductoiso 99.2 2.6E-11 5.6E-16 108.7 6.6 102 21-125 21-128 (487)
60 PLN02712 arogenate dehydrogena 99.2 2.6E-10 5.7E-15 108.3 13.8 109 34-144 50-159 (667)
61 PRK08293 3-hydroxybutyryl-CoA 99.2 1.6E-09 3.6E-14 93.1 15.9 140 37-188 4-168 (287)
62 PRK06545 prephenate dehydrogen 99.2 5.4E-10 1.2E-14 99.1 13.1 142 37-187 1-156 (359)
63 PRK07066 3-hydroxybutyryl-CoA 99.2 8.2E-10 1.8E-14 96.4 13.8 114 37-153 8-141 (321)
64 PRK08507 prephenate dehydrogen 99.2 7.7E-10 1.7E-14 94.6 13.4 100 37-144 1-103 (275)
65 PLN02688 pyrroline-5-carboxyla 99.2 2.5E-10 5.5E-15 96.9 10.3 104 37-144 1-109 (266)
66 COG0287 TyrA Prephenate dehydr 99.1 1.1E-09 2.5E-14 93.7 14.0 135 36-178 3-145 (279)
67 PRK09260 3-hydroxybutyryl-CoA 99.1 1.5E-09 3.2E-14 93.4 14.4 115 37-155 2-141 (288)
68 PLN02545 3-hydroxybutyryl-CoA 99.1 2E-09 4.3E-14 92.9 13.9 104 37-144 5-133 (295)
69 PRK12491 pyrroline-5-carboxyla 99.1 3.1E-10 6.6E-15 97.1 8.4 103 37-143 3-110 (272)
70 PRK11064 wecC UDP-N-acetyl-D-m 99.1 1.5E-09 3.3E-14 98.0 11.8 109 37-145 4-136 (415)
71 PRK14619 NAD(P)H-dependent gly 99.1 7.8E-10 1.7E-14 96.1 9.5 83 35-132 3-86 (308)
72 cd01075 NAD_bind_Leu_Phe_Val_D 99.1 2.4E-09 5.1E-14 87.6 11.8 109 32-148 24-134 (200)
73 PRK08818 prephenate dehydrogen 99.1 7.1E-09 1.5E-13 92.0 15.6 122 34-177 2-130 (370)
74 COG1023 Gnd Predicted 6-phosph 99.0 1.5E-09 3.4E-14 89.5 10.2 118 37-157 1-121 (300)
75 PRK15182 Vi polysaccharide bio 99.0 2.3E-09 5.1E-14 97.0 12.3 137 35-173 5-172 (425)
76 PRK07679 pyrroline-5-carboxyla 99.0 1.2E-09 2.5E-14 93.6 9.7 106 35-144 2-113 (279)
77 PRK07530 3-hydroxybutyryl-CoA 99.0 9.2E-09 2E-13 88.6 14.7 115 37-156 5-144 (292)
78 COG0499 SAM1 S-adenosylhomocys 99.0 1.3E-09 2.7E-14 94.7 9.2 111 33-148 206-318 (420)
79 PRK13302 putative L-aspartate 99.0 1.3E-09 2.9E-14 93.1 9.1 109 35-148 5-118 (271)
80 PRK14618 NAD(P)H-dependent gly 99.0 2.2E-09 4.8E-14 94.0 10.7 103 36-144 4-123 (328)
81 TIGR03026 NDP-sugDHase nucleot 99.0 1.2E-08 2.5E-13 92.2 14.8 108 37-144 1-137 (411)
82 PRK14806 bifunctional cyclohex 99.0 6.4E-09 1.4E-13 100.2 13.8 137 37-180 4-153 (735)
83 PRK06035 3-hydroxyacyl-CoA deh 99.0 1.6E-08 3.4E-13 87.1 14.6 115 37-155 4-145 (291)
84 TIGR00518 alaDH alanine dehydr 99.0 6.5E-09 1.4E-13 92.6 12.5 151 33-202 164-325 (370)
85 cd01065 NAD_bind_Shikimate_DH 99.0 6.7E-09 1.5E-13 80.8 11.1 111 33-148 16-134 (155)
86 TIGR01724 hmd_rel H2-forming N 99.0 1.9E-08 4E-13 86.9 14.7 93 48-144 32-129 (341)
87 PRK11199 tyrA bifunctional cho 99.0 9.6E-09 2.1E-13 91.6 13.5 91 35-141 97-188 (374)
88 PRK07531 bifunctional 3-hydrox 99.0 1.2E-08 2.7E-13 94.1 14.6 106 37-144 5-130 (495)
89 PRK05808 3-hydroxybutyryl-CoA 99.0 2.4E-08 5.2E-13 85.6 15.2 105 37-144 4-132 (282)
90 PRK06129 3-hydroxyacyl-CoA deh 99.0 2.4E-08 5.2E-13 86.8 15.3 106 37-144 3-132 (308)
91 PRK07819 3-hydroxybutyryl-CoA 99.0 8.5E-09 1.8E-13 88.8 11.9 116 37-156 6-146 (286)
92 PRK06130 3-hydroxybutyryl-CoA 98.9 2.2E-08 4.8E-13 86.9 14.2 105 37-143 5-128 (311)
93 PRK00094 gpsA NAD(P)H-dependen 98.9 3.7E-09 8E-14 91.9 8.7 95 37-133 2-110 (325)
94 PF01210 NAD_Gly3P_dh_N: NAD-d 98.9 3E-09 6.4E-14 83.7 7.1 92 38-131 1-106 (157)
95 PF10727 Rossmann-like: Rossma 98.9 4.8E-10 1E-14 85.1 2.4 92 35-128 9-104 (127)
96 PRK07680 late competence prote 98.9 7.1E-09 1.5E-13 88.5 9.8 103 37-143 1-109 (273)
97 KOG1370 S-adenosylhomocysteine 98.9 5.2E-09 1.1E-13 89.1 7.7 95 33-132 211-305 (434)
98 PRK15057 UDP-glucose 6-dehydro 98.9 2.7E-08 5.8E-13 89.1 12.8 119 37-164 1-147 (388)
99 PRK14194 bifunctional 5,10-met 98.9 8.9E-09 1.9E-13 88.7 9.0 82 30-132 153-235 (301)
100 KOG2380 Prephenate dehydrogena 98.9 1.2E-08 2.6E-13 88.1 9.6 142 35-181 51-193 (480)
101 PRK08268 3-hydroxy-acyl-CoA de 98.9 4.9E-08 1.1E-12 90.3 14.1 116 37-157 8-148 (507)
102 PF01488 Shikimate_DH: Shikima 98.9 5.3E-09 1.1E-13 80.3 6.3 96 33-131 9-112 (135)
103 PRK06476 pyrroline-5-carboxyla 98.9 1.4E-08 3E-13 86.0 9.3 103 37-145 1-108 (258)
104 PRK06928 pyrroline-5-carboxyla 98.8 2.5E-08 5.3E-13 85.5 10.1 104 37-144 2-112 (277)
105 cd01080 NAD_bind_m-THF_DH_Cycl 98.8 2.1E-08 4.5E-13 79.8 8.7 82 32-134 40-122 (168)
106 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.8 3.4E-08 7.4E-13 91.2 11.4 120 35-159 4-148 (503)
107 PRK11880 pyrroline-5-carboxyla 98.8 1.7E-08 3.6E-13 85.7 8.5 101 37-143 3-107 (267)
108 PRK07634 pyrroline-5-carboxyla 98.8 3.4E-08 7.3E-13 82.7 10.0 106 35-145 3-114 (245)
109 PRK09287 6-phosphogluconate de 98.8 1.8E-08 3.9E-13 91.9 8.7 112 47-159 1-120 (459)
110 PRK13304 L-aspartate dehydroge 98.8 2.8E-08 6E-13 84.7 9.0 107 37-148 2-115 (265)
111 COG0345 ProC Pyrroline-5-carbo 98.8 2E-08 4.4E-13 85.2 8.0 99 37-143 2-108 (266)
112 PF02737 3HCDH_N: 3-hydroxyacy 98.7 3.4E-08 7.5E-13 79.4 7.5 114 38-155 1-138 (180)
113 COG0059 IlvC Ketol-acid reduct 98.7 4.5E-08 9.8E-13 83.4 8.3 90 33-124 15-105 (338)
114 PRK14189 bifunctional 5,10-met 98.7 5.9E-08 1.3E-12 83.1 8.8 81 31-132 153-234 (285)
115 PRK14188 bifunctional 5,10-met 98.7 9.3E-08 2E-12 82.4 8.8 80 31-132 153-234 (296)
116 COG0362 Gnd 6-phosphogluconate 98.7 8.9E-07 1.9E-11 78.1 14.8 158 37-206 4-169 (473)
117 TIGR01915 npdG NADPH-dependent 98.6 1.4E-07 3E-12 78.0 8.2 94 37-133 1-106 (219)
118 PRK06522 2-dehydropantoate 2-r 98.6 5E-07 1.1E-11 77.8 11.8 108 37-148 1-119 (304)
119 cd05311 NAD_bind_2_malic_enz N 98.6 1.2E-06 2.6E-11 73.0 13.5 154 32-202 21-196 (226)
120 PRK12557 H(2)-dependent methyl 98.6 2.6E-07 5.7E-12 81.4 10.0 95 48-143 32-132 (342)
121 PRK14179 bifunctional 5,10-met 98.6 1.8E-07 3.8E-12 80.1 8.5 81 30-131 152-233 (284)
122 TIGR01035 hemA glutamyl-tRNA r 98.6 1.2E-07 2.6E-12 85.8 7.7 96 33-131 177-280 (417)
123 cd05213 NAD_bind_Glutamyl_tRNA 98.6 2.2E-07 4.7E-12 81.0 8.9 96 34-131 176-276 (311)
124 COG2085 Predicted dinucleotide 98.6 2.5E-07 5.5E-12 75.4 8.5 91 37-130 2-95 (211)
125 PLN02353 probable UDP-glucose 98.6 2.1E-06 4.5E-11 78.9 15.5 137 37-174 2-176 (473)
126 TIGR00561 pntA NAD(P) transhyd 98.6 2.2E-07 4.8E-12 85.5 9.0 96 33-129 161-285 (511)
127 PRK08229 2-dehydropantoate 2-r 98.6 4.1E-07 9E-12 79.8 10.3 107 37-148 3-126 (341)
128 COG0677 WecC UDP-N-acetyl-D-ma 98.6 6.8E-07 1.5E-11 78.9 11.3 157 37-203 10-201 (436)
129 PRK14175 bifunctional 5,10-met 98.6 2.8E-07 6.1E-12 79.0 8.8 80 31-131 153-233 (286)
130 PRK12921 2-dehydropantoate 2-r 98.6 7.4E-07 1.6E-11 76.9 11.1 108 37-148 1-121 (305)
131 PF02153 PDH: Prephenate dehyd 98.6 4.9E-07 1.1E-11 76.7 9.7 126 51-179 1-133 (258)
132 PF03721 UDPG_MGDP_dh_N: UDP-g 98.5 1.2E-07 2.6E-12 76.6 5.6 109 37-145 1-138 (185)
133 cd05191 NAD_bind_amino_acid_DH 98.5 6.8E-07 1.5E-11 63.1 8.7 67 32-128 19-86 (86)
134 PRK00045 hemA glutamyl-tRNA re 98.5 2.3E-07 4.9E-12 84.2 7.6 96 33-131 179-283 (423)
135 PLN00203 glutamyl-tRNA reducta 98.5 2.3E-07 5E-12 85.9 7.6 96 33-131 263-372 (519)
136 COG0240 GpsA Glycerol-3-phosph 98.5 3.3E-07 7.2E-12 79.6 8.0 99 37-137 2-114 (329)
137 PTZ00431 pyrroline carboxylate 98.5 4.6E-07 1E-11 76.9 8.8 98 35-143 2-103 (260)
138 PF01262 AlaDh_PNT_C: Alanine 98.5 2.5E-07 5.5E-12 73.4 6.4 98 32-129 16-140 (168)
139 PTZ00345 glycerol-3-phosphate 98.5 8.7E-07 1.9E-11 78.7 9.3 99 34-134 9-135 (365)
140 TIGR03376 glycerol3P_DH glycer 98.5 5.9E-07 1.3E-11 79.2 8.0 95 38-134 1-122 (342)
141 COG1064 AdhP Zn-dependent alco 98.4 4.7E-07 1E-11 79.2 6.7 136 35-201 166-308 (339)
142 KOG0023 Alcohol dehydrogenase, 98.4 5E-07 1.1E-11 77.8 6.3 143 35-206 181-331 (360)
143 COG1712 Predicted dinucleotide 98.4 1E-06 2.2E-11 72.4 7.8 98 37-139 1-102 (255)
144 PRK10792 bifunctional 5,10-met 98.4 1.9E-06 4.2E-11 73.8 9.7 80 31-131 154-234 (285)
145 PRK09424 pntA NAD(P) transhydr 98.4 1E-06 2.3E-11 81.2 8.3 97 33-129 162-286 (509)
146 PRK06141 ornithine cyclodeamin 98.4 2.1E-06 4.5E-11 74.9 9.6 90 34-129 123-220 (314)
147 COG0373 HemA Glutamyl-tRNA red 98.4 9.9E-07 2.2E-11 79.0 7.4 98 33-133 175-279 (414)
148 TIGR02371 ala_DH_arch alanine 98.4 1.5E-06 3.3E-11 76.1 8.5 91 35-131 127-225 (325)
149 PRK05472 redox-sensing transcr 98.4 2.6E-07 5.7E-12 76.2 3.2 110 35-144 83-201 (213)
150 PRK11730 fadB multifunctional 98.3 5.7E-06 1.2E-10 79.7 12.5 115 37-155 314-452 (715)
151 PRK00258 aroE shikimate 5-dehy 98.3 2.1E-06 4.6E-11 73.6 8.6 72 32-103 119-196 (278)
152 COG1250 FadB 3-hydroxyacyl-CoA 98.3 6.5E-06 1.4E-10 71.3 11.6 117 36-156 3-143 (307)
153 PRK12439 NAD(P)H-dependent gly 98.3 1.7E-06 3.6E-11 76.3 7.9 94 37-133 8-116 (341)
154 PRK14620 NAD(P)H-dependent gly 98.3 2.2E-06 4.8E-11 74.9 8.6 93 37-131 1-109 (326)
155 PRK13940 glutamyl-tRNA reducta 98.3 1.6E-06 3.5E-11 78.3 7.8 94 33-131 178-276 (414)
156 PF02882 THF_DHG_CYH_C: Tetrah 98.3 2.2E-06 4.7E-11 67.6 7.6 81 31-132 31-112 (160)
157 PRK14192 bifunctional 5,10-met 98.3 3E-06 6.6E-11 72.8 9.1 80 31-131 154-234 (283)
158 PRK14191 bifunctional 5,10-met 98.3 2.1E-06 4.5E-11 73.6 7.9 80 31-131 152-232 (285)
159 KOG2653 6-phosphogluconate deh 98.3 1.6E-05 3.4E-10 69.5 13.1 158 37-206 7-173 (487)
160 cd05212 NAD_bind_m-THF_DH_Cycl 98.3 8.4E-06 1.8E-10 62.9 10.4 80 31-131 23-103 (140)
161 cd01078 NAD_bind_H4MPT_DH NADP 98.3 2.7E-06 5.8E-11 68.9 7.6 98 32-133 24-134 (194)
162 PRK14176 bifunctional 5,10-met 98.3 3.1E-06 6.8E-11 72.5 8.3 80 30-130 158-238 (287)
163 PRK13301 putative L-aspartate 98.3 5.1E-06 1.1E-10 70.3 9.4 102 37-144 3-112 (267)
164 TIGR02440 FadJ fatty oxidation 98.3 9.6E-06 2.1E-10 78.0 12.5 115 37-155 305-444 (699)
165 PRK14178 bifunctional 5,10-met 98.3 2.6E-06 5.6E-11 72.8 7.5 80 31-131 147-227 (279)
166 TIGR01546 GAPDH-II_archae glyc 98.3 4E-06 8.7E-11 73.5 8.8 88 39-129 1-109 (333)
167 PRK11154 fadJ multifunctional 98.3 1E-05 2.2E-10 78.0 12.2 116 36-155 309-449 (708)
168 TIGR02437 FadB fatty oxidation 98.3 1.1E-05 2.5E-10 77.6 12.5 115 37-155 314-452 (714)
169 PRK13303 L-aspartate dehydroge 98.3 9.1E-06 2E-10 69.3 10.7 107 37-148 2-115 (265)
170 PRK07340 ornithine cyclodeamin 98.3 2.9E-06 6.2E-11 73.8 7.6 92 34-132 123-221 (304)
171 TIGR02441 fa_ox_alpha_mit fatt 98.3 8.3E-06 1.8E-10 78.8 11.4 116 37-156 336-475 (737)
172 PRK06249 2-dehydropantoate 2-r 98.3 3.6E-05 7.8E-10 67.0 14.4 110 36-151 5-128 (313)
173 PF01408 GFO_IDH_MocA: Oxidore 98.2 2.5E-06 5.4E-11 63.3 5.9 65 38-102 2-72 (120)
174 COG0686 Ald Alanine dehydrogen 98.2 2.4E-06 5.3E-11 73.3 5.8 96 33-128 165-268 (371)
175 TIGR00507 aroE shikimate 5-deh 98.2 1.1E-05 2.5E-10 68.7 10.0 110 33-147 114-231 (270)
176 cd05211 NAD_bind_Glu_Leu_Phe_V 98.2 2.2E-05 4.9E-10 65.0 11.1 108 33-148 20-145 (217)
177 PRK14982 acyl-ACP reductase; P 98.2 7.1E-06 1.5E-10 72.1 8.5 99 31-135 150-253 (340)
178 cd01079 NAD_bind_m-THF_DH NAD 98.2 1.5E-05 3.3E-10 64.5 9.7 91 31-130 57-158 (197)
179 PF13241 NAD_binding_7: Putati 98.2 3E-06 6.5E-11 61.9 5.2 88 33-128 4-91 (103)
180 PRK14190 bifunctional 5,10-met 98.2 1.1E-05 2.4E-10 69.2 9.2 82 30-132 152-234 (284)
181 cd01076 NAD_bind_1_Glu_DH NAD( 98.2 2E-05 4.4E-10 65.7 10.4 108 32-148 27-154 (227)
182 TIGR02992 ectoine_eutC ectoine 98.1 1.2E-05 2.6E-10 70.5 9.1 89 35-129 128-225 (326)
183 PRK08618 ornithine cyclodeamin 98.1 9E-06 1.9E-10 71.3 8.2 89 35-130 126-223 (325)
184 PRK06046 alanine dehydrogenase 98.1 1.2E-05 2.6E-10 70.5 8.9 88 35-129 128-224 (326)
185 PRK14183 bifunctional 5,10-met 98.1 1.4E-05 3E-10 68.4 8.4 81 30-131 151-232 (281)
186 PRK00048 dihydrodipicolinate r 98.1 2E-05 4.3E-10 66.9 9.1 92 37-133 2-96 (257)
187 PRK14170 bifunctional 5,10-met 98.1 3.1E-05 6.8E-10 66.3 10.1 81 30-131 151-232 (284)
188 PRK12549 shikimate 5-dehydroge 98.1 1.7E-05 3.8E-10 68.2 8.5 70 33-102 124-202 (284)
189 PRK14172 bifunctional 5,10-met 98.0 3.9E-05 8.4E-10 65.6 9.9 80 31-131 153-233 (278)
190 PRK14186 bifunctional 5,10-met 98.0 4.4E-05 9.5E-10 65.9 10.2 81 31-132 153-234 (297)
191 TIGR01921 DAP-DH diaminopimela 98.0 2.2E-05 4.7E-10 68.6 8.2 87 37-129 4-92 (324)
192 PRK14173 bifunctional 5,10-met 98.0 2.7E-05 6E-10 66.8 8.5 82 30-132 149-231 (287)
193 TIGR01763 MalateDH_bact malate 98.0 2.4E-05 5.2E-10 68.0 8.3 115 37-153 2-147 (305)
194 PRK00676 hemA glutamyl-tRNA re 98.0 4.1E-05 8.8E-10 67.2 9.5 93 33-131 171-264 (338)
195 PRK14171 bifunctional 5,10-met 98.0 5.3E-05 1.2E-09 65.1 9.9 80 31-131 154-234 (288)
196 PRK06823 ornithine cyclodeamin 98.0 2.5E-05 5.4E-10 68.2 8.1 90 35-130 127-224 (315)
197 PTZ00117 malate dehydrogenase; 98.0 4.6E-05 9.9E-10 66.7 9.7 117 34-151 3-147 (319)
198 PRK14177 bifunctional 5,10-met 98.0 3.7E-05 8.1E-10 65.9 8.8 81 30-131 153-234 (284)
199 PRK08291 ectoine utilization p 98.0 2.2E-05 4.9E-10 68.9 7.6 88 35-128 131-227 (330)
200 PRK14169 bifunctional 5,10-met 98.0 3.6E-05 7.9E-10 65.9 8.6 81 30-131 150-231 (282)
201 PRK06444 prephenate dehydrogen 98.0 4.4E-05 9.5E-10 62.3 8.7 61 37-131 1-62 (197)
202 PRK06407 ornithine cyclodeamin 98.0 3E-05 6.6E-10 67.3 8.2 91 35-131 116-215 (301)
203 PRK09310 aroDE bifunctional 3- 98.0 6.9E-05 1.5E-09 69.0 10.9 72 31-103 327-401 (477)
204 COG1748 LYS9 Saccharopine dehy 98.0 3.1E-05 6.8E-10 69.1 8.3 90 37-132 2-103 (389)
205 PF02423 OCD_Mu_crystall: Orni 98.0 1.2E-05 2.5E-10 70.2 5.5 93 36-132 128-228 (313)
206 PRK14166 bifunctional 5,10-met 98.0 4.1E-05 9E-10 65.6 8.6 81 30-131 151-232 (282)
207 TIGR02354 thiF_fam2 thiamine b 98.0 3.6E-05 7.8E-10 62.9 7.9 96 32-128 17-145 (200)
208 PRK14180 bifunctional 5,10-met 97.9 5.1E-05 1.1E-09 65.0 8.9 81 30-131 152-233 (282)
209 PRK14031 glutamate dehydrogena 97.9 9.8E-05 2.1E-09 67.1 11.1 111 31-148 223-361 (444)
210 cd05313 NAD_bind_2_Glu_DH NAD( 97.9 0.00033 7.2E-09 59.3 13.4 110 31-148 33-172 (254)
211 PRK14187 bifunctional 5,10-met 97.9 5.8E-05 1.2E-09 65.0 8.9 80 31-131 155-235 (294)
212 PLN02516 methylenetetrahydrofo 97.9 5.9E-05 1.3E-09 65.1 8.9 81 30-131 161-242 (299)
213 PF02558 ApbA: Ketopantoate re 97.9 2.3E-05 5E-10 60.6 5.8 109 39-151 1-123 (151)
214 PRK06199 ornithine cyclodeamin 97.9 4E-05 8.6E-10 68.6 7.9 94 35-131 154-262 (379)
215 PRK14184 bifunctional 5,10-met 97.9 7.4E-05 1.6E-09 64.2 9.2 81 30-131 151-236 (286)
216 PRK14030 glutamate dehydrogena 97.9 0.00052 1.1E-08 62.4 15.0 157 31-201 223-411 (445)
217 PRK14193 bifunctional 5,10-met 97.9 6.2E-05 1.3E-09 64.6 8.6 82 30-132 152-236 (284)
218 KOG2304 3-hydroxyacyl-CoA dehy 97.9 5.7E-06 1.2E-10 68.2 2.1 124 33-160 8-161 (298)
219 PRK14182 bifunctional 5,10-met 97.9 7.2E-05 1.6E-09 64.1 8.9 80 31-131 152-232 (282)
220 PLN02616 tetrahydrofolate dehy 97.9 6.3E-05 1.4E-09 66.3 8.7 81 30-131 225-306 (364)
221 TIGR01470 cysG_Nterm siroheme 97.9 5E-05 1.1E-09 62.3 7.5 92 32-128 5-100 (205)
222 COG1004 Ugd Predicted UDP-gluc 97.9 0.00011 2.5E-09 65.2 10.1 128 37-165 1-157 (414)
223 PRK14181 bifunctional 5,10-met 97.9 8.2E-05 1.8E-09 63.9 8.9 81 31-132 148-233 (287)
224 PF01113 DapB_N: Dihydrodipico 97.9 4.9E-05 1.1E-09 57.4 6.7 103 37-144 1-114 (124)
225 smart00859 Semialdhyde_dh Semi 97.9 7.4E-05 1.6E-09 55.9 7.6 90 38-129 1-100 (122)
226 PRK14174 bifunctional 5,10-met 97.9 6.6E-05 1.4E-09 64.8 8.1 80 31-131 154-238 (295)
227 PLN02897 tetrahydrofolate dehy 97.9 7.5E-05 1.6E-09 65.5 8.5 81 30-131 208-289 (345)
228 PRK06718 precorrin-2 dehydroge 97.9 8.7E-05 1.9E-09 60.8 8.4 91 32-128 6-100 (202)
229 PRK07589 ornithine cyclodeamin 97.8 6.3E-05 1.4E-09 66.5 8.0 91 35-129 128-226 (346)
230 cd00650 LDH_MDH_like NAD-depen 97.8 4.5E-05 9.9E-10 64.8 6.9 116 39-155 1-149 (263)
231 COG2423 Predicted ornithine cy 97.8 9.1E-05 2E-09 64.9 8.3 89 35-129 129-226 (330)
232 PLN02477 glutamate dehydrogena 97.8 0.0012 2.6E-08 59.7 15.6 109 31-148 201-329 (410)
233 PF00185 OTCace: Aspartate/orn 97.8 0.00019 4.1E-09 56.5 9.1 94 35-128 1-120 (158)
234 PRK14185 bifunctional 5,10-met 97.8 0.00014 3E-09 62.7 8.9 80 31-131 152-236 (293)
235 PF13380 CoA_binding_2: CoA bi 97.8 0.00031 6.7E-09 52.4 9.6 101 37-149 1-105 (116)
236 PRK09414 glutamate dehydrogena 97.8 0.00017 3.8E-09 65.6 9.6 110 31-148 227-362 (445)
237 PRK05708 2-dehydropantoate 2-r 97.8 0.00018 3.8E-09 62.6 9.4 112 37-151 3-126 (305)
238 PRK14168 bifunctional 5,10-met 97.8 0.00014 3E-09 62.8 8.6 81 30-131 155-240 (297)
239 PF00208 ELFV_dehydrog: Glutam 97.8 0.00016 3.4E-09 61.0 8.6 110 33-148 29-165 (244)
240 COG0190 FolD 5,10-methylene-te 97.8 0.00011 2.4E-09 62.5 7.7 114 31-186 151-265 (283)
241 PF03720 UDPG_MGDP_dh_C: UDP-g 97.8 0.00011 2.4E-09 53.8 6.8 81 46-127 17-100 (106)
242 PF01118 Semialdhyde_dh: Semia 97.7 0.0001 2.3E-09 55.2 6.7 88 38-130 1-99 (121)
243 TIGR01809 Shik-DH-AROM shikima 97.7 6.1E-05 1.3E-09 64.8 5.9 71 33-103 122-201 (282)
244 TIGR01761 thiaz-red thiazoliny 97.7 0.00024 5.3E-09 62.7 9.5 111 37-150 4-119 (343)
245 PRK14167 bifunctional 5,10-met 97.7 0.00022 4.7E-09 61.6 9.0 80 31-131 152-236 (297)
246 PRK12548 shikimate 5-dehydroge 97.7 0.00012 2.5E-09 63.3 6.9 38 32-69 122-160 (289)
247 PRK00683 murD UDP-N-acetylmura 97.6 0.00019 4.2E-09 64.9 7.9 109 36-144 3-126 (418)
248 PRK08300 acetaldehyde dehydrog 97.6 0.00036 7.7E-09 60.5 9.1 89 36-129 4-102 (302)
249 PRK06719 precorrin-2 dehydroge 97.6 0.00016 3.5E-09 56.8 6.4 70 31-102 8-80 (157)
250 PRK04207 glyceraldehyde-3-phos 97.6 0.00023 5.1E-09 62.8 8.2 66 37-102 2-88 (341)
251 PRK01710 murD UDP-N-acetylmura 97.6 0.00047 1E-08 63.2 10.3 112 33-145 11-142 (458)
252 PTZ00082 L-lactate dehydrogena 97.6 0.00028 6.1E-09 61.8 8.2 116 34-151 4-153 (321)
253 KOG2711 Glycerol-3-phosphate d 97.6 0.00034 7.5E-09 60.9 8.3 98 33-132 18-143 (372)
254 COG0673 MviM Predicted dehydro 97.6 0.0002 4.2E-09 62.5 7.0 68 37-104 4-79 (342)
255 COG0169 AroE Shikimate 5-dehyd 97.6 0.00054 1.2E-08 58.9 9.5 93 32-127 122-225 (283)
256 PRK08269 3-hydroxybutyryl-CoA 97.6 0.0014 3.1E-08 57.2 12.1 95 47-143 1-128 (314)
257 COG0569 TrkA K+ transport syst 97.6 0.00014 3.1E-09 60.5 5.6 69 37-105 1-79 (225)
258 TIGR00036 dapB dihydrodipicoli 97.6 0.00073 1.6E-08 57.6 10.0 105 37-146 2-118 (266)
259 PTZ00079 NADP-specific glutama 97.5 0.0015 3.2E-08 59.5 12.2 111 31-148 232-371 (454)
260 cd05291 HicDH_like L-2-hydroxy 97.5 0.00053 1.1E-08 59.6 9.1 65 37-102 1-78 (306)
261 COG1893 ApbA Ketopantoate redu 97.5 0.0016 3.5E-08 56.7 12.0 141 37-182 1-154 (307)
262 TIGR02356 adenyl_thiF thiazole 97.5 0.00024 5.2E-09 58.1 6.4 87 32-119 17-137 (202)
263 TIGR03215 ac_ald_DH_ac acetald 97.5 0.00052 1.1E-08 59.1 8.7 87 37-128 2-95 (285)
264 PRK00856 pyrB aspartate carbam 97.5 0.00098 2.1E-08 58.0 10.3 66 33-100 153-221 (305)
265 cd05297 GH4_alpha_glucosidase_ 97.5 0.00024 5.3E-09 64.5 6.7 107 37-143 1-160 (423)
266 PLN02819 lysine-ketoglutarate 97.5 0.0003 6.6E-09 69.9 7.8 68 35-102 568-658 (1042)
267 PRK10206 putative oxidoreducta 97.5 0.00025 5.4E-09 62.6 6.6 66 38-103 3-75 (344)
268 COG4007 Predicted dehydrogenas 97.5 0.0025 5.5E-08 53.7 12.0 91 48-142 33-128 (340)
269 TIGR00670 asp_carb_tr aspartat 97.5 0.0012 2.7E-08 57.2 10.7 95 33-127 147-262 (301)
270 COG0334 GdhA Glutamate dehydro 97.5 0.00075 1.6E-08 60.4 9.4 107 32-146 203-329 (411)
271 PRK09880 L-idonate 5-dehydroge 97.5 0.00083 1.8E-08 58.9 9.7 91 34-129 168-267 (343)
272 TIGR01850 argC N-acetyl-gamma- 97.5 0.00075 1.6E-08 59.7 9.2 93 37-135 1-106 (346)
273 PRK06223 malate dehydrogenase; 97.5 0.00058 1.3E-08 59.2 8.4 63 37-100 3-78 (307)
274 PRK11579 putative oxidoreducta 97.5 0.00049 1.1E-08 60.7 8.0 64 37-102 5-74 (346)
275 cd08230 glucose_DH Glucose deh 97.5 0.0005 1.1E-08 60.5 8.1 90 35-129 172-270 (355)
276 COG0026 PurK Phosphoribosylami 97.5 0.00033 7E-09 61.8 6.5 63 36-98 1-68 (375)
277 PRK00436 argC N-acetyl-gamma-g 97.4 0.00065 1.4E-08 60.0 8.6 94 37-135 3-106 (343)
278 cd05312 NAD_bind_1_malic_enz N 97.4 0.0027 5.9E-08 54.3 12.0 170 31-204 20-224 (279)
279 PF02254 TrkA_N: TrkA-N domain 97.4 0.00055 1.2E-08 50.3 6.9 85 39-125 1-93 (116)
280 PRK09496 trkA potassium transp 97.4 0.00051 1.1E-08 62.4 8.0 69 37-105 1-78 (453)
281 PRK12749 quinate/shikimate deh 97.4 0.0012 2.7E-08 56.9 9.7 72 31-102 119-206 (288)
282 COG1648 CysG Siroheme synthase 97.4 0.00047 1E-08 56.8 6.8 91 31-128 7-103 (210)
283 PRK03369 murD UDP-N-acetylmura 97.4 0.00065 1.4E-08 62.8 8.3 111 34-144 10-141 (488)
284 PRK12475 thiamine/molybdopteri 97.4 0.00048 1.1E-08 60.7 7.1 84 32-116 20-139 (338)
285 PRK01390 murD UDP-N-acetylmura 97.4 0.0012 2.5E-08 60.5 9.8 113 33-145 6-139 (460)
286 cd01339 LDH-like_MDH L-lactate 97.4 0.00061 1.3E-08 59.0 7.4 62 39-101 1-75 (300)
287 PLN02527 aspartate carbamoyltr 97.4 0.0027 5.8E-08 55.3 11.3 95 33-127 148-265 (306)
288 PF03447 NAD_binding_3: Homose 97.4 0.00018 3.9E-09 53.4 3.5 86 43-133 1-95 (117)
289 PRK06270 homoserine dehydrogen 97.3 0.0018 3.9E-08 57.2 10.2 112 37-148 3-146 (341)
290 TIGR03366 HpnZ_proposed putati 97.3 0.00075 1.6E-08 57.5 7.5 90 34-128 119-218 (280)
291 PRK00779 ornithine carbamoyltr 97.3 0.0015 3.2E-08 56.8 9.4 67 33-99 149-224 (304)
292 PRK02255 putrescine carbamoylt 97.3 0.0019 4.1E-08 57.0 10.0 95 33-127 151-271 (338)
293 TIGR02964 xanthine_xdhC xanthi 97.3 0.0017 3.6E-08 54.8 9.3 89 36-147 100-188 (246)
294 PRK03659 glutathione-regulated 97.3 0.00079 1.7E-08 63.8 8.0 92 36-129 400-499 (601)
295 PRK01713 ornithine carbamoyltr 97.3 0.0018 4E-08 57.0 9.7 96 33-128 153-275 (334)
296 PLN02353 probable UDP-glucose 97.3 0.0022 4.7E-08 59.1 10.5 104 33-139 321-456 (473)
297 PRK13814 pyrB aspartate carbam 97.3 0.0014 3E-08 57.2 8.6 66 33-98 154-223 (310)
298 COG0540 PyrB Aspartate carbamo 97.3 0.0013 2.8E-08 56.8 8.1 67 33-99 155-231 (316)
299 PRK05690 molybdopterin biosynt 97.3 0.00034 7.4E-09 58.9 4.7 93 32-128 28-154 (245)
300 PRK02102 ornithine carbamoyltr 97.3 0.0023 5E-08 56.3 9.8 68 33-100 152-232 (331)
301 PRK00066 ldh L-lactate dehydro 97.3 0.001 2.2E-08 58.1 7.7 66 35-101 5-82 (315)
302 PRK04284 ornithine carbamoyltr 97.3 0.0014 3.1E-08 57.6 8.5 96 33-128 152-274 (332)
303 cd05293 LDH_1 A subgroup of L- 97.3 0.0016 3.4E-08 56.9 8.7 113 37-150 4-144 (312)
304 PRK10669 putative cation:proto 97.2 0.001 2.2E-08 62.5 7.8 88 37-126 418-513 (558)
305 PRK04148 hypothetical protein; 97.2 0.0016 3.4E-08 49.8 7.3 70 35-105 16-90 (134)
306 cd05292 LDH_2 A subgroup of L- 97.2 0.00096 2.1E-08 58.1 7.0 65 37-102 1-77 (308)
307 PRK14027 quinate/shikimate deh 97.2 0.0016 3.4E-08 56.2 8.2 70 33-102 124-204 (283)
308 TIGR02822 adh_fam_2 zinc-bindi 97.2 0.0015 3.2E-08 57.1 8.2 90 35-129 165-255 (329)
309 cd00762 NAD_bind_malic_enz NAD 97.2 0.01 2.2E-07 50.1 12.8 169 31-203 20-224 (254)
310 PRK00141 murD UDP-N-acetylmura 97.2 0.00084 1.8E-08 61.8 6.9 113 33-145 12-146 (473)
311 PLN02342 ornithine carbamoyltr 97.2 0.0033 7.1E-08 55.6 10.2 95 33-127 191-306 (348)
312 TIGR00658 orni_carb_tr ornithi 97.2 0.0025 5.3E-08 55.5 9.2 95 33-127 145-263 (304)
313 COG5322 Predicted dehydrogenas 97.2 0.00085 1.8E-08 56.8 6.0 101 30-135 161-268 (351)
314 PLN02968 Probable N-acetyl-gam 97.2 0.001 2.2E-08 59.6 6.7 99 34-138 36-144 (381)
315 cd00757 ThiF_MoeB_HesA_family 97.2 0.0011 2.3E-08 55.3 6.3 93 32-128 17-143 (228)
316 PLN02520 bifunctional 3-dehydr 97.1 0.0027 5.8E-08 59.4 9.5 70 32-101 375-448 (529)
317 PRK03515 ornithine carbamoyltr 97.1 0.002 4.2E-08 56.8 8.1 67 33-99 153-232 (336)
318 PRK08306 dipicolinate synthase 97.1 0.0063 1.4E-07 52.7 11.0 107 35-149 1-117 (296)
319 PRK06349 homoserine dehydrogen 97.1 0.0016 3.6E-08 59.2 7.7 108 37-148 4-125 (426)
320 PRK03562 glutathione-regulated 97.1 0.0017 3.7E-08 61.8 7.9 89 36-126 400-496 (621)
321 PF00389 2-Hacid_dh: D-isomer 97.1 0.0011 2.4E-08 50.3 5.4 128 46-213 6-133 (133)
322 PRK11891 aspartate carbamoyltr 97.1 0.0043 9.4E-08 56.3 9.9 68 33-100 238-316 (429)
323 PRK12550 shikimate 5-dehydroge 97.1 0.0022 4.8E-08 54.9 7.6 64 36-102 122-188 (272)
324 PF00056 Ldh_1_N: lactate/mala 97.1 0.00075 1.6E-08 52.1 4.3 65 37-101 1-78 (141)
325 PRK05086 malate dehydrogenase; 97.1 0.0035 7.6E-08 54.7 8.9 95 37-131 1-121 (312)
326 COG0771 MurD UDP-N-acetylmuram 97.1 0.0045 9.8E-08 56.5 9.8 124 34-158 5-156 (448)
327 PRK01438 murD UDP-N-acetylmura 97.1 0.0019 4E-08 59.4 7.5 115 30-144 10-146 (480)
328 PRK14106 murD UDP-N-acetylmura 97.1 0.0066 1.4E-07 55.2 10.9 112 33-144 2-132 (450)
329 cd05188 MDR Medium chain reduc 97.1 0.0057 1.2E-07 50.6 9.8 93 34-131 133-235 (271)
330 PF03435 Saccharop_dh: Sacchar 97.0 0.00051 1.1E-08 61.4 3.5 63 39-101 1-76 (386)
331 PRK02472 murD UDP-N-acetylmura 97.0 0.0077 1.7E-07 54.7 11.2 113 33-145 2-133 (447)
332 PRK05562 precorrin-2 dehydroge 97.0 0.0029 6.3E-08 52.6 7.4 90 31-127 20-115 (223)
333 PRK12562 ornithine carbamoyltr 97.0 0.0058 1.3E-07 53.8 9.6 96 33-128 153-275 (334)
334 cd08239 THR_DH_like L-threonin 97.0 0.0035 7.7E-08 54.5 8.3 90 35-129 163-263 (339)
335 PRK00421 murC UDP-N-acetylmura 97.0 0.0022 4.8E-08 58.8 7.1 113 34-146 5-133 (461)
336 TIGR03026 NDP-sugDHase nucleot 97.0 0.0052 1.1E-07 55.5 9.4 89 33-127 310-409 (411)
337 COG1004 Ugd Predicted UDP-gluc 97.0 0.0034 7.3E-08 56.0 7.8 68 34-101 308-385 (414)
338 COG2910 Putative NADH-flavin r 97.0 0.0035 7.5E-08 50.4 7.1 65 37-101 1-71 (211)
339 COG1063 Tdh Threonine dehydrog 96.9 0.0032 6.9E-08 55.7 7.7 92 34-130 167-271 (350)
340 PRK10637 cysG siroheme synthas 96.9 0.0031 6.8E-08 57.8 7.8 92 31-128 7-103 (457)
341 PLN02586 probable cinnamyl alc 96.9 0.0068 1.5E-07 53.6 9.7 90 35-129 183-279 (360)
342 TIGR02355 moeB molybdopterin s 96.9 0.0028 6E-08 53.3 6.7 85 32-117 20-138 (240)
343 PRK02006 murD UDP-N-acetylmura 96.9 0.0028 6E-08 58.7 7.1 67 33-99 4-76 (498)
344 PRK07688 thiamine/molybdopteri 96.9 0.0027 5.9E-08 56.1 6.6 85 32-117 20-140 (339)
345 PRK14804 ornithine carbamoyltr 96.9 0.0097 2.1E-07 51.9 9.9 68 33-100 150-226 (311)
346 PRK06392 homoserine dehydrogen 96.9 0.0062 1.3E-07 53.5 8.7 111 37-148 1-137 (326)
347 PRK06019 phosphoribosylaminoim 96.9 0.0024 5.1E-08 57.0 6.2 63 36-98 2-69 (372)
348 PRK09496 trkA potassium transp 96.9 0.0074 1.6E-07 54.9 9.5 90 34-125 229-328 (453)
349 TIGR01202 bchC 2-desacetyl-2-h 96.8 0.0039 8.4E-08 53.9 7.3 89 34-129 143-232 (308)
350 PF13460 NAD_binding_10: NADH( 96.8 0.0019 4E-08 51.1 4.8 65 39-105 1-73 (183)
351 PRK08644 thiamine biosynthesis 96.8 0.0042 9.2E-08 51.2 7.0 37 32-68 24-61 (212)
352 TIGR03316 ygeW probable carbam 96.8 0.011 2.4E-07 52.5 10.1 68 33-100 167-253 (357)
353 TIGR02717 AcCoA-syn-alpha acet 96.8 0.014 3.1E-07 53.4 10.9 110 34-151 5-126 (447)
354 TIGR03201 dearomat_had 6-hydro 96.8 0.0044 9.5E-08 54.4 7.3 90 35-129 166-273 (349)
355 PLN02178 cinnamyl-alcohol dehy 96.8 0.0064 1.4E-07 54.2 8.4 90 35-129 178-274 (375)
356 KOG0022 Alcohol dehydrogenase, 96.8 0.002 4.4E-08 55.8 4.9 54 35-88 192-246 (375)
357 PRK07200 aspartate/ornithine c 96.8 0.012 2.5E-07 53.0 10.0 67 34-100 185-270 (395)
358 KOG3124 Pyrroline-5-carboxylat 96.8 0.0019 4.2E-08 54.2 4.5 96 37-134 1-101 (267)
359 cd01492 Aos1_SUMO Ubiquitin ac 96.8 0.0031 6.8E-08 51.4 5.6 38 32-69 17-55 (197)
360 cd00300 LDH_like L-lactate deh 96.7 0.0046 1E-07 53.6 6.9 62 39-101 1-75 (300)
361 cd01486 Apg7 Apg7 is an E1-lik 96.7 0.0042 9.2E-08 53.8 6.4 31 38-68 1-32 (307)
362 cd05283 CAD1 Cinnamyl alcohol 96.7 0.009 1.9E-07 52.0 8.5 90 35-129 169-264 (337)
363 PLN02740 Alcohol dehydrogenase 96.7 0.0073 1.6E-07 53.8 8.1 90 35-129 198-301 (381)
364 cd08281 liver_ADH_like1 Zinc-d 96.7 0.0056 1.2E-07 54.3 7.2 90 35-129 191-291 (371)
365 PTZ00325 malate dehydrogenase; 96.7 0.006 1.3E-07 53.5 7.2 68 33-101 5-85 (321)
366 PRK08192 aspartate carbamoyltr 96.7 0.012 2.5E-07 52.0 9.1 67 33-99 156-233 (338)
367 PF02629 CoA_binding: CoA bind 96.7 0.0034 7.4E-08 45.0 4.8 65 36-101 3-71 (96)
368 cd01487 E1_ThiF_like E1_ThiF_l 96.7 0.0056 1.2E-07 48.9 6.4 79 38-117 1-112 (174)
369 PRK11064 wecC UDP-N-acetyl-D-m 96.7 0.0061 1.3E-07 55.3 7.4 70 31-101 315-395 (415)
370 PRK06153 hypothetical protein; 96.6 0.0041 8.9E-08 55.6 5.9 36 33-68 173-209 (393)
371 cd08237 ribitol-5-phosphate_DH 96.6 0.013 2.9E-07 51.3 9.1 91 35-129 163-257 (341)
372 CHL00194 ycf39 Ycf39; Provisio 96.6 0.0053 1.1E-07 53.2 6.4 65 37-101 1-73 (317)
373 cd01338 MDH_choloroplast_like 96.6 0.023 5.1E-07 49.8 10.4 65 37-101 3-87 (322)
374 TIGR03451 mycoS_dep_FDH mycoth 96.6 0.0079 1.7E-07 53.0 7.5 90 35-129 176-277 (358)
375 PRK04690 murD UDP-N-acetylmura 96.6 0.0067 1.5E-07 55.8 7.2 111 34-144 6-139 (468)
376 cd08234 threonine_DH_like L-th 96.6 0.0075 1.6E-07 52.1 7.1 92 35-131 159-260 (334)
377 PRK08223 hypothetical protein; 96.6 0.01 2.2E-07 51.1 7.7 86 32-117 23-143 (287)
378 PRK04308 murD UDP-N-acetylmura 96.6 0.01 2.2E-07 54.1 8.2 113 33-145 2-135 (445)
379 TIGR01772 MDH_euk_gproteo mala 96.6 0.0097 2.1E-07 52.0 7.7 93 38-130 1-118 (312)
380 PLN02602 lactate dehydrogenase 96.6 0.0098 2.1E-07 52.8 7.7 92 37-129 38-155 (350)
381 PLN00106 malate dehydrogenase 96.5 0.0062 1.3E-07 53.4 6.3 98 35-132 17-139 (323)
382 TIGR02853 spore_dpaA dipicolin 96.5 0.033 7.2E-07 48.0 10.7 105 36-148 1-115 (287)
383 cd08242 MDR_like Medium chain 96.5 0.011 2.4E-07 50.8 7.7 90 34-128 154-245 (319)
384 PRK14874 aspartate-semialdehyd 96.5 0.009 1.9E-07 52.6 7.3 88 36-129 1-95 (334)
385 TIGR02818 adh_III_F_hyde S-(hy 96.5 0.0097 2.1E-07 52.7 7.5 89 35-128 185-287 (368)
386 cd08296 CAD_like Cinnamyl alco 96.5 0.012 2.5E-07 51.2 7.9 90 35-129 163-260 (333)
387 PRK08328 hypothetical protein; 96.5 0.011 2.5E-07 49.3 7.4 37 32-68 23-60 (231)
388 cd08255 2-desacetyl-2-hydroxye 96.5 0.012 2.6E-07 49.4 7.7 93 34-131 96-193 (277)
389 PF13478 XdhC_C: XdhC Rossmann 96.5 0.0057 1.2E-07 46.9 5.1 85 39-151 1-85 (136)
390 PLN02383 aspartate semialdehyd 96.5 0.01 2.2E-07 52.5 7.2 88 35-128 6-100 (344)
391 PRK10309 galactitol-1-phosphat 96.4 0.011 2.3E-07 51.8 7.3 89 35-128 160-260 (347)
392 TIGR02825 B4_12hDH leukotriene 96.4 0.012 2.5E-07 51.0 7.4 89 35-129 138-238 (325)
393 PRK08374 homoserine dehydrogen 96.4 0.012 2.6E-07 52.0 7.4 107 37-148 3-143 (336)
394 cd08245 CAD Cinnamyl alcohol d 96.4 0.013 2.9E-07 50.5 7.7 90 35-129 162-257 (330)
395 PRK15182 Vi polysaccharide bio 96.4 0.024 5.2E-07 51.6 9.6 97 31-132 309-416 (425)
396 KOG0024 Sorbitol dehydrogenase 96.4 0.016 3.5E-07 50.5 7.9 48 35-82 169-217 (354)
397 cd05294 LDH-like_MDH_nadp A la 96.4 0.016 3.6E-07 50.4 8.2 64 37-101 1-81 (309)
398 COG2344 AT-rich DNA-binding pr 96.4 0.0056 1.2E-07 49.3 4.7 65 37-101 85-155 (211)
399 TIGR01532 E4PD_g-proteo D-eryt 96.4 0.017 3.6E-07 50.8 8.1 30 38-67 1-34 (325)
400 PF04016 DUF364: Domain of unk 96.4 0.0093 2E-07 46.4 5.9 87 34-128 9-95 (147)
401 PRK05600 thiamine biosynthesis 96.4 0.0059 1.3E-07 54.6 5.4 85 32-117 37-155 (370)
402 PRK08265 short chain dehydroge 96.4 0.013 2.9E-07 49.1 7.3 37 33-69 3-40 (261)
403 PRK01368 murD UDP-N-acetylmura 96.4 0.013 2.7E-07 53.9 7.6 109 35-144 5-128 (454)
404 PRK03803 murD UDP-N-acetylmura 96.4 0.011 2.4E-07 53.9 7.3 110 35-144 5-132 (448)
405 PRK05597 molybdopterin biosynt 96.4 0.0066 1.4E-07 54.0 5.6 85 32-117 24-142 (355)
406 PRK13376 pyrB bifunctional asp 96.4 0.029 6.4E-07 52.2 9.9 98 31-128 169-293 (525)
407 cd08233 butanediol_DH_like (2R 96.3 0.023 5.1E-07 49.6 8.8 90 35-129 172-273 (351)
408 PRK05442 malate dehydrogenase; 96.3 0.053 1.1E-06 47.7 10.9 65 37-101 5-89 (326)
409 cd08277 liver_alcohol_DH_like 96.3 0.015 3.3E-07 51.4 7.7 91 34-129 183-287 (365)
410 PRK08762 molybdopterin biosynt 96.3 0.012 2.6E-07 52.6 7.0 37 32-68 131-168 (376)
411 TIGR01851 argC_other N-acetyl- 96.3 0.023 4.9E-07 49.5 8.4 75 38-128 3-80 (310)
412 cd08301 alcohol_DH_plants Plan 96.3 0.018 3.9E-07 50.8 8.1 90 35-129 187-290 (369)
413 COG0281 SfcA Malic enzyme [Ene 96.3 0.055 1.2E-06 48.7 11.0 156 30-202 193-370 (432)
414 PLN02948 phosphoribosylaminoim 96.3 0.011 2.4E-07 55.9 6.9 70 32-101 18-92 (577)
415 cd00755 YgdL_like Family of ac 96.3 0.062 1.3E-06 44.9 10.6 125 33-160 8-184 (231)
416 COG0078 ArgF Ornithine carbamo 96.3 0.055 1.2E-06 46.7 10.3 94 34-127 151-269 (310)
417 cd01485 E1-1_like Ubiquitin ac 96.3 0.013 2.9E-07 47.7 6.4 38 32-69 15-53 (198)
418 cd08298 CAD2 Cinnamyl alcohol 96.3 0.018 4E-07 49.6 7.7 90 34-128 166-256 (329)
419 PRK03806 murD UDP-N-acetylmura 96.3 0.025 5.5E-07 51.4 8.9 111 33-144 3-129 (438)
420 PRK07232 bifunctional malic en 96.2 0.14 3.1E-06 49.7 14.2 156 31-202 180-353 (752)
421 PRK12769 putative oxidoreducta 96.2 0.015 3.3E-07 55.6 7.7 69 34-102 325-422 (654)
422 PRK07231 fabG 3-ketoacyl-(acyl 96.2 0.014 3.1E-07 48.1 6.6 37 33-69 2-39 (251)
423 PLN02514 cinnamyl-alcohol dehy 96.2 0.028 6.1E-07 49.6 8.8 91 34-129 179-276 (357)
424 TIGR01087 murD UDP-N-acetylmur 96.2 0.036 7.8E-07 50.2 9.6 108 38-146 1-128 (433)
425 TIGR01161 purK phosphoribosyla 96.2 0.0096 2.1E-07 52.6 5.6 62 38-99 1-67 (352)
426 TIGR00112 proC pyrroline-5-car 96.2 0.0098 2.1E-07 50.0 5.4 81 60-144 10-91 (245)
427 cd08231 MDR_TM0436_like Hypoth 96.2 0.019 4E-07 50.5 7.4 90 35-129 177-281 (361)
428 PF05368 NmrA: NmrA-like famil 96.2 0.0085 1.8E-07 49.4 4.9 65 39-103 1-75 (233)
429 cd05284 arabinose_DH_like D-ar 96.2 0.031 6.7E-07 48.4 8.6 92 35-131 167-269 (340)
430 cd05290 LDH_3 A subgroup of L- 96.2 0.016 3.4E-07 50.5 6.7 64 38-101 1-77 (307)
431 cd08293 PTGR2 Prostaglandin re 96.1 0.023 5E-07 49.4 7.7 87 36-128 155-254 (345)
432 PLN02827 Alcohol dehydrogenase 96.1 0.023 5E-07 50.6 7.8 90 35-129 193-296 (378)
433 PRK11863 N-acetyl-gamma-glutam 96.1 0.026 5.7E-07 49.3 7.9 76 37-128 3-81 (313)
434 cd08300 alcohol_DH_class_III c 96.1 0.02 4.4E-07 50.6 7.4 89 35-128 186-288 (368)
435 cd00704 MDH Malate dehydrogena 96.1 0.044 9.5E-07 48.1 9.3 65 37-101 1-85 (323)
436 cd08269 Zn_ADH9 Alcohol dehydr 96.1 0.034 7.5E-07 47.3 8.5 91 34-129 128-230 (312)
437 PLN02662 cinnamyl-alcohol dehy 96.1 0.025 5.4E-07 48.7 7.6 67 35-101 3-85 (322)
438 PRK05786 fabG 3-ketoacyl-(acyl 96.1 0.014 3E-07 47.8 5.7 37 33-69 2-39 (238)
439 cd01483 E1_enzyme_family Super 96.1 0.071 1.5E-06 40.7 9.3 32 38-69 1-33 (143)
440 PRK07877 hypothetical protein; 96.1 0.02 4.2E-07 55.4 7.3 86 32-119 103-222 (722)
441 PLN03154 putative allyl alcoho 96.1 0.022 4.9E-07 50.1 7.3 89 34-128 157-258 (348)
442 PF05222 AlaDh_PNT_N: Alanine 96.0 0.049 1.1E-06 41.7 8.2 97 50-156 18-118 (136)
443 PRK07411 hypothetical protein; 96.0 0.016 3.5E-07 52.1 6.3 88 32-120 34-155 (390)
444 COG2227 UbiG 2-polyprenyl-3-me 96.0 0.028 6E-07 47.0 7.2 88 34-127 58-160 (243)
445 cd08260 Zn_ADH6 Alcohol dehydr 96.0 0.031 6.8E-07 48.6 8.0 91 35-130 165-266 (345)
446 PRK12862 malic enzyme; Reviewe 96.0 0.11 2.4E-06 50.7 12.3 153 31-202 188-361 (763)
447 cd08295 double_bond_reductase_ 96.0 0.028 6E-07 49.0 7.6 88 35-128 151-251 (338)
448 PRK12861 malic enzyme; Reviewe 96.0 0.12 2.6E-06 50.2 12.2 154 31-203 184-358 (764)
449 PRK10083 putative oxidoreducta 96.0 0.036 7.8E-07 48.1 8.0 92 34-130 159-261 (339)
450 cd08285 NADP_ADH NADP(H)-depen 96.0 0.031 6.7E-07 48.9 7.7 90 35-129 166-267 (351)
451 COG1062 AdhC Zn-dependent alco 95.9 0.03 6.5E-07 49.2 7.3 93 34-131 184-288 (366)
452 PRK09422 ethanol-active dehydr 95.9 0.038 8.3E-07 47.8 8.1 91 34-129 161-262 (338)
453 PRK08324 short chain dehydroge 95.9 0.022 4.8E-07 54.8 7.2 38 32-69 418-456 (681)
454 PRK12809 putative oxidoreducta 95.9 0.027 5.9E-07 53.8 7.7 69 34-102 308-405 (639)
455 PRK15076 alpha-galactosidase; 95.9 0.0088 1.9E-07 54.5 4.1 114 37-151 2-169 (431)
456 PLN00112 malate dehydrogenase 95.9 0.11 2.3E-06 47.6 11.0 65 37-101 101-185 (444)
457 cd08289 MDR_yhfp_like Yhfp put 95.9 0.038 8.2E-07 47.5 7.8 89 35-129 146-244 (326)
458 cd08284 FDH_like_2 Glutathione 95.9 0.035 7.6E-07 48.2 7.7 93 34-131 166-269 (344)
459 PRK14805 ornithine carbamoyltr 95.9 0.12 2.6E-06 45.0 10.8 67 33-100 144-222 (302)
460 cd01337 MDH_glyoxysomal_mitoch 95.9 0.024 5.2E-07 49.5 6.5 94 37-131 1-120 (310)
461 PLN03209 translocon at the inn 95.8 0.017 3.8E-07 54.2 5.9 36 34-69 78-114 (576)
462 COG3288 PntA NAD/NADP transhyd 95.8 0.019 4.2E-07 49.6 5.6 97 32-129 160-282 (356)
463 PRK03815 murD UDP-N-acetylmura 95.8 0.08 1.7E-06 47.8 9.9 104 37-144 1-113 (401)
464 TIGR01381 E1_like_apg7 E1-like 95.8 0.021 4.6E-07 54.1 6.3 37 32-68 334-371 (664)
465 PRK07878 molybdopterin biosynt 95.8 0.025 5.4E-07 50.9 6.5 85 32-117 38-156 (392)
466 TIGR01759 MalateDH-SF1 malate 95.8 0.034 7.3E-07 48.8 7.1 65 37-101 4-88 (323)
467 TIGR01318 gltD_gamma_fam gluta 95.8 0.052 1.1E-06 50.0 8.6 71 34-104 139-238 (467)
468 PRK12814 putative NADPH-depend 95.8 0.082 1.8E-06 50.7 10.2 70 34-103 191-289 (652)
469 PF00107 ADH_zinc_N: Zinc-bind 95.8 0.0066 1.4E-07 45.2 2.3 81 46-131 1-92 (130)
470 KOG0399 Glutamate synthase [Am 95.8 0.047 1E-06 54.7 8.5 71 33-103 1782-1881(2142)
471 cd01336 MDH_cytoplasmic_cytoso 95.8 0.026 5.6E-07 49.6 6.3 64 38-101 4-87 (325)
472 PRK07806 short chain dehydroge 95.7 0.062 1.3E-06 44.3 8.3 37 33-69 3-40 (248)
473 PRK04663 murD UDP-N-acetylmura 95.7 0.097 2.1E-06 47.7 10.2 110 34-144 4-132 (438)
474 PF00070 Pyr_redox: Pyridine n 95.7 0.024 5.3E-07 38.8 4.9 33 38-70 1-33 (80)
475 TIGR01296 asd_B aspartate-semi 95.7 0.021 4.6E-07 50.4 5.6 84 38-128 1-92 (339)
476 TIGR01758 MDH_euk_cyt malate d 95.7 0.018 4E-07 50.5 5.2 64 38-101 1-84 (324)
477 PRK13529 malate dehydrogenase; 95.7 0.29 6.3E-06 45.9 13.1 166 31-203 290-500 (563)
478 TIGR01771 L-LDH-NAD L-lactate 95.7 0.052 1.1E-06 47.1 7.8 61 41-101 1-73 (299)
479 KOG2741 Dimeric dihydrodiol de 95.7 0.1 2.2E-06 45.8 9.5 69 37-105 7-85 (351)
480 cd08278 benzyl_alcohol_DH Benz 95.7 0.068 1.5E-06 47.2 8.7 91 35-130 186-287 (365)
481 KOG2305 3-hydroxyacyl-CoA dehy 95.7 0.049 1.1E-06 45.4 7.1 141 37-189 4-169 (313)
482 cd08274 MDR9 Medium chain dehy 95.6 0.056 1.2E-06 46.9 8.0 87 35-128 177-273 (350)
483 TIGR00978 asd_EA aspartate-sem 95.6 0.039 8.4E-07 48.7 7.0 87 37-128 1-104 (341)
484 PRK06128 oxidoreductase; Provi 95.6 0.048 1E-06 46.8 7.4 36 33-68 52-88 (300)
485 PLN02896 cinnamyl-alcohol dehy 95.6 0.034 7.4E-07 48.8 6.6 71 31-101 5-88 (353)
486 TIGR02819 fdhA_non_GSH formald 95.6 0.066 1.4E-06 48.1 8.5 96 34-129 184-300 (393)
487 PRK15057 UDP-glucose 6-dehydro 95.6 0.039 8.5E-07 49.6 7.0 65 34-101 294-368 (388)
488 PRK08040 putative semialdehyde 95.6 0.036 7.8E-07 48.9 6.6 87 35-128 3-97 (336)
489 cd08232 idonate-5-DH L-idonate 95.6 0.049 1.1E-06 47.2 7.4 90 35-129 165-263 (339)
490 COG0002 ArgC Acetylglutamate s 95.6 0.062 1.3E-06 47.3 7.9 92 37-134 3-107 (349)
491 TIGR03466 HpnA hopanoid-associ 95.6 0.022 4.8E-07 48.9 5.2 65 37-101 1-73 (328)
492 cd05280 MDR_yhdh_yhfp Yhdh and 95.6 0.065 1.4E-06 45.8 8.1 87 36-128 147-243 (325)
493 PRK04523 N-acetylornithine car 95.6 0.053 1.2E-06 47.8 7.5 68 33-100 165-252 (335)
494 PRK02705 murD UDP-N-acetylmura 95.6 0.058 1.3E-06 49.2 8.1 107 38-144 2-133 (459)
495 TIGR01019 sucCoAalpha succinyl 95.6 0.089 1.9E-06 45.4 8.7 110 35-150 5-118 (286)
496 PLN03129 NADP-dependent malic 95.5 0.29 6.2E-06 46.1 12.5 162 31-203 316-519 (581)
497 PRK14851 hypothetical protein; 95.5 0.17 3.7E-06 48.7 11.4 37 32-68 39-76 (679)
498 PLN02214 cinnamoyl-CoA reducta 95.5 0.041 8.8E-07 48.3 6.6 69 33-101 7-90 (342)
499 cd08286 FDH_like_ADH2 formalde 95.5 0.063 1.4E-06 46.7 7.8 89 35-128 166-266 (345)
500 cd08270 MDR4 Medium chain dehy 95.5 0.068 1.5E-06 45.3 7.8 89 35-129 132-223 (305)
No 1
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-56 Score=396.12 Aligned_cols=223 Identities=89% Similarity=1.457 Sum_probs=208.7
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
|+||++.|++.++++.+++|.|........+++|.|++|||||+|+||+.+|+++++||++|++||++....+.....++
T Consensus 164 ~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 164 MRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred HHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence 58999999999999999999997532223467999999999999999999999999999999999997655555556677
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
...+++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||++||++||+++|++|+|.||+||||++||+
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPl 323 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPA 323 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 76779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCCCCC
Q 027408 161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223 (223)
Q Consensus 161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~~~~ 223 (223)
+.++|||.+||+++|||+||.|.+++.++...+++||.+|++|+++++.|.|+..|+|+++|.
T Consensus 324 p~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i~~~~~~~~~~~ 386 (386)
T PLN03139 324 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYIVKEGKLASQYQ 386 (386)
T ss_pred CCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCcceeecCCccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999995
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-57 Score=390.18 Aligned_cols=203 Identities=36% Similarity=0.609 Sum_probs=189.0
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
++||+++|++..+++++++|.|.+.. ..+.+|.|||+||||+|+||+.+|+++++|||+|++|||... .+.....++
T Consensus 109 ~~~L~~~R~~~~~~~~~~~g~W~~~~--~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~-~~~~~~~~~ 185 (324)
T COG0111 109 ALLLALARRIPDADASQRRGEWDRKA--FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSP-RERAGVDGV 185 (324)
T ss_pred HHHHHHhcCchhhHHHHHcCCccccc--cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCc-hhhhccccc
Confidence 47999999999999999999999732 356799999999999999999999999999999999999542 233444456
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
....++++++++||+|++|+|+|++|+++|+++.|++||+|+++||++||++||++||+++|++|+|.||+||||++||+
T Consensus 186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl 265 (324)
T COG0111 186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPL 265 (324)
T ss_pred eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCC
Confidence 66779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408 161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 206 (223)
Q Consensus 161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~ 206 (223)
+.+||||.+|||++|||+|++|.|+++++...+++|+.+|++|.+.
T Consensus 266 ~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~ 311 (324)
T COG0111 266 PADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPV 311 (324)
T ss_pred CCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999975
No 3
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-55 Score=387.13 Aligned_cols=223 Identities=50% Similarity=0.935 Sum_probs=206.9
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
|+||++.|++..+++.+++|.|........+++|.|++|||||+|+||+.+|++|++|||+|++|||+....+.....++
T Consensus 157 ~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~ 236 (385)
T PRK07574 157 MMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL 236 (385)
T ss_pred HHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence 58999999999999999999998543223467899999999999999999999999999999999997644444555677
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
....++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|++||+++|++|+|.||+||||++||+
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl 316 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA 316 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence 66679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCC----CCC
Q 027408 161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP----QYR 223 (223)
Q Consensus 161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~----~~~ 223 (223)
+.++|||.+|||++|||+||+|.++++++...+++||.+|++|+++...+.|+..|++++ +|.
T Consensus 317 p~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 383 (385)
T PRK07574 317 PADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLAGTGAHSYT 383 (385)
T ss_pred CCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEecCCcccCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999997 773
No 4
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=7.4e-54 Score=372.95 Aligned_cols=210 Identities=31% Similarity=0.504 Sum_probs=189.5
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCCChhHHHhh
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKET 78 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~ 78 (223)
++||+++|++...++.+++|.|.... ....+.+|.|||+||||+|+||+.+|++++ +|||+|++||+... .+.....
T Consensus 109 ~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~-~~~~~~~ 187 (323)
T PRK15409 109 ALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHH-KEAEERF 187 (323)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCc-hhhHHhc
Confidence 58999999999999999999996421 112467999999999999999999999998 99999999998642 2333445
Q ss_pred CCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC
Q 027408 79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (223)
Q Consensus 79 g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e 158 (223)
++.. .++++++++||+|++|+|+|++|+++|+++.|+.||+|+++||++||++||++||+++|++|+|.||+||||++|
T Consensus 188 ~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~E 266 (323)
T PRK15409 188 NARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQE 266 (323)
T ss_pred CcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCC
Confidence 6655 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceecc
Q 027408 159 PAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK 214 (223)
Q Consensus 159 p~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~ 214 (223)
|++.++|||.+|||++|||+|+.|.+++.++...+++||.+|++|+++ .|.||.
T Consensus 267 P~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~vn~ 320 (323)
T PRK15409 267 PLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVE--KNCVNP 320 (323)
T ss_pred CCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC--CcccCc
Confidence 999999999999999999999999999999999999999999999964 455653
No 5
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=3.4e-53 Score=367.68 Aligned_cols=204 Identities=40% Similarity=0.677 Sum_probs=189.9
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCc--ccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET 78 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~--~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 78 (223)
++||++.|++.++++.+|+|.|.... ....+.+++|||+||||+|+||+++|+++++|||+|++|||++. ++..+..
T Consensus 109 aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~ 187 (324)
T COG1052 109 ALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKEL 187 (324)
T ss_pred HHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhc
Confidence 58999999999999999999998753 22457799999999999999999999999999999999999876 5556666
Q ss_pred CCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC
Q 027408 79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (223)
Q Consensus 79 g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e 158 (223)
+..+++ +++++++||+|++|||++++|+++|+++.|+.||+|++|||++||++||++||++||++|+|.+|+||||+.|
T Consensus 188 ~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~E 266 (324)
T COG1052 188 GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENE 266 (324)
T ss_pred Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCC
Confidence 677775 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCC---eEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408 159 PAPKDHPWRYMPN---QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 206 (223)
Q Consensus 159 p~~~~~~l~~~~n---v~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~ 206 (223)
|...++||+.++| |++|||+|+.|.|++.+|...+++|+.+|++|++.
T Consensus 267 p~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~ 317 (324)
T COG1052 267 PALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVP 317 (324)
T ss_pred CCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9988899988777 99999999999999999999999999999998864
No 6
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-53 Score=366.55 Aligned_cols=201 Identities=29% Similarity=0.502 Sum_probs=182.6
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcc----cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~----~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 76 (223)
++||+++|++..+++.+++|.|..... ...+.+|.||||||||+|+||+.+|+++++|||+|++||++... .
T Consensus 109 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~--- 184 (317)
T PRK06487 109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A--- 184 (317)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c---
Confidence 579999999999999999999975321 12346899999999999999999999999999999999986421 1
Q ss_pred hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 77 ~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
... ..++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||+
T Consensus 185 --~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 261 (317)
T PRK06487 185 --RPD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLS 261 (317)
T ss_pred --ccc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 122 24899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccC--CCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 027408 157 PQPAPKDHPWRY--MPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPV 208 (223)
Q Consensus 157 ~ep~~~~~~l~~--~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~ 208 (223)
+||++.++|||. +|||++|||+|++|.++.+++...+++||.+|++|+|++.
T Consensus 262 ~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~ 315 (317)
T PRK06487 262 VEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPLRV 315 (317)
T ss_pred CCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 999999999995 8999999999999999999999999999999999987643
No 7
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-52 Score=363.39 Aligned_cols=199 Identities=23% Similarity=0.407 Sum_probs=180.9
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcc-c---CcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGV-A---YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~-~---~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 76 (223)
+|||+++|++..+++.+++|.|..... . ..+++|.||||||||+|+||+.+|+++++|||+|++|||+....
T Consensus 106 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---- 181 (311)
T PRK08410 106 AMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---- 181 (311)
T ss_pred HHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----
Confidence 589999999999999999999975321 1 12468999999999999999999999999999999999964321
Q ss_pred hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 77 ~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
..++.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|. |+||||+
T Consensus 182 ~~~~~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 182 NEEYER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred ccCcee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 223443 48999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCCCCCccCC---CCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 027408 157 PQPAPKDHPWRYM---PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 205 (223)
Q Consensus 157 ~ep~~~~~~l~~~---~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~ 205 (223)
+||++.++|||.+ |||++|||+|++|.++..++...+++|+.+|++|++
T Consensus 260 ~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 260 KEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred CCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999986 899999999999999999999999999999999863
No 8
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-51 Score=357.52 Aligned_cols=199 Identities=26% Similarity=0.434 Sum_probs=179.7
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCc-c---cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAG-V---AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-~---~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 76 (223)
++||+++|++...++.+++|.|.... . ...+.+|.||||||||+|.||+.+|+++++|||+|++|+++... .
T Consensus 108 ~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-~--- 183 (314)
T PRK06932 108 GMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-V--- 183 (314)
T ss_pred HHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-c---
Confidence 57999999999999999999997432 1 12346899999999999999999999999999999999985321 1
Q ss_pred hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 77 ~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
... ...++++++++||+|++|+|+|++|+++|+++.|++||+|+++||++||++||++||+++|++|+|.||+||||+
T Consensus 184 -~~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~ 261 (314)
T PRK06932 184 -CRE-GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLV 261 (314)
T ss_pred -ccc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence 111 135899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcc----CCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 027408 157 PQPAPKDHPWR----YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 205 (223)
Q Consensus 157 ~ep~~~~~~l~----~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~ 205 (223)
+||++.++||| .+|||++|||+|++|.++.+++...+++||.+|++|++
T Consensus 262 ~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 262 KEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred CCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999998 48999999999999999999999999999999998763
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=5.4e-51 Score=356.74 Aligned_cols=208 Identities=34% Similarity=0.567 Sum_probs=187.5
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~-----~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 75 (223)
++||+++|++..+++.+++|.|..... ...+.+|.||+|||||+|.||+.+|+++++||++|++|||+... ...
T Consensus 110 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~ 188 (333)
T PRK13243 110 ALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP-EAE 188 (333)
T ss_pred HHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH
Confidence 579999999999999999999974211 12357999999999999999999999999999999999997633 233
Q ss_pred HhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408 76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (223)
Q Consensus 76 ~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~ 155 (223)
...++.. .++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|+++|++|+|.||+||||
T Consensus 189 ~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~ 267 (333)
T PRK13243 189 KELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVF 267 (333)
T ss_pred HHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccC
Confidence 3445554 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceec
Q 027408 156 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIV 213 (223)
Q Consensus 156 ~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~ 213 (223)
++||++ ++|||.+|||++|||+|++|.++..++...+++||.+|++|+++ .|.|+
T Consensus 268 ~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~v~ 322 (333)
T PRK13243 268 EEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVP--PTLVN 322 (333)
T ss_pred CCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCC--CcccC
Confidence 999987 88999999999999999999999999999999999999999864 45554
No 10
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=7.8e-51 Score=357.25 Aligned_cols=202 Identities=32% Similarity=0.395 Sum_probs=182.9
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH----
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---- 76 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---- 76 (223)
++||+++|++....+.+++|.|... .+.+|.|++|||||+|.||+.+|+++++|||+|++|||+........
T Consensus 128 ~l~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~ 203 (347)
T PLN02928 128 YLMLGLLRKQNEMQISLKARRLGEP----IGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP 203 (347)
T ss_pred HHHHHHHhCHHHHHHHHHcCCcccc----cccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc
Confidence 4799999999999999999999642 35689999999999999999999999999999999999742211110
Q ss_pred -----h---hCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 77 -----E---TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 77 -----~---~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
. ... ...++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||++||++||++||+++|++|+|.
T Consensus 204 ~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 204 NGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred cccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 0 011 3458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 027408 149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207 (223)
Q Consensus 149 ~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~ 207 (223)
||+||||++||+++++|||.+|||++|||+|++|.++++++...+++|+.+|++|+++.
T Consensus 283 gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 341 (347)
T PLN02928 283 GLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLT 341 (347)
T ss_pred EEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999764
No 11
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.4e-50 Score=359.00 Aligned_cols=209 Identities=23% Similarity=0.300 Sum_probs=182.7
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCCChhH--HH
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL--EK 76 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~--~~ 76 (223)
++||++.|++..+++.+++|.|..+. ....+.+|.|++|||||+|.||+.+|++++ +|||+|++||++...... ..
T Consensus 129 ~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~ 208 (386)
T PLN02306 129 SLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT 208 (386)
T ss_pred HHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh
Confidence 58999999999999999999985322 112467899999999999999999999985 999999999987532111 01
Q ss_pred hhC------------CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 77 ETG------------AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 77 ~~g------------~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
.++ +....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||++||++||++||+++|++
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 111 12245899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcc
Q 027408 145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQN 210 (223)
Q Consensus 145 g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n 210 (223)
|++.||+||||++||++ ++|||.+|||++|||+|++|.++.+++...+++||.+|++|+++ +.+|
T Consensus 289 g~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 289 NPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred CCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 99999999999999975 46899999999999999999999999999999999999999976 3444
No 12
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-50 Score=362.52 Aligned_cols=204 Identities=29% Similarity=0.502 Sum_probs=185.3
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
++||+++|++..+++.+++|.|.+.. ..+.+|.||||||||+|+||+.+|+++++|||+|++||++.... ..++
T Consensus 118 ~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~ 191 (409)
T PRK11790 118 GEIILLLRGIPEKNAKAHRGGWNKSA--AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNA 191 (409)
T ss_pred HHHHHHHcChHHHHHHHHcCcccccc--cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCc
Confidence 57999999999999999999998643 34679999999999999999999999999999999999864211 1234
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
....++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus 192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~ 271 (409)
T PRK11790 192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK 271 (409)
T ss_pred eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC----CCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcc
Q 027408 161 PK----DHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQN 210 (223)
Q Consensus 161 ~~----~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n 210 (223)
+. ++|||.+|||++|||+||+|.++++++...+++|+.+|++|+++ ..+|
T Consensus 272 ~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn 326 (409)
T PRK11790 272 SNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVN 326 (409)
T ss_pred CccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCccee
Confidence 76 46999999999999999999999999999999999999999875 3444
No 13
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.7e-50 Score=350.28 Aligned_cols=208 Identities=24% Similarity=0.354 Sum_probs=185.5
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
++||++.|++..+.+.+++|.|... ...++.|+||||||+|.||+.+|+++++|||+|++||++......... +
T Consensus 105 ~~~L~~~r~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~ 178 (312)
T PRK15469 105 SQVLHWFRRFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--F 178 (312)
T ss_pred HHHHHHHcChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--e
Confidence 4799999999999999999999742 245799999999999999999999999999999999986533211111 1
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
....++++++++||+|++|+|+|++|+++++++.|+.||+|+++||++||++||++||+++|++|++.||+||||++||+
T Consensus 179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCC
Confidence 12358999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCc
Q 027408 161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGEL 218 (223)
Q Consensus 161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~ 218 (223)
+.++|||.+|||++|||+|++|.+. ++...+.+|+++|.+|++ +.|.|+++.+|
T Consensus 259 ~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~--~~~~V~~~~gY 312 (312)
T PRK15469 259 PPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGER--VCGQVDRARGY 312 (312)
T ss_pred CCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCC--CcccCCcccCC
Confidence 9999999999999999999999875 567888999999999997 58888887664
No 14
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=5.8e-51 Score=327.64 Aligned_cols=177 Identities=39% Similarity=0.673 Sum_probs=154.8
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
||||++.|++..+++.++++.|.. .....+++|.|++|||||+|+||+.+|+++++|||+|++|||+..........++
T Consensus 2 ~l~L~~~R~~~~~~~~~~~~~W~~-~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 2 ALMLALLRRLPEYHEAQRNGEWAS-RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHTTHHHHHHHHHTTBHHH-HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred hHHHHHHhCHHHHHHHHHcCCCCC-CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 589999999999999999999921 1124578999999999999999999999999999999999998744333445566
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
.. .++++++++||+|++|+|+|++|+++|+++.|+.||+|+++||++||++||++||+++|++|++.+|+||||++||+
T Consensus 81 ~~-~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 159 (178)
T PF02826_consen 81 EY-VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL 159 (178)
T ss_dssp EE-SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred ee-eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence 44 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEccCCC
Q 027408 161 PKDHPWRYMPNQAMTPHVS 179 (223)
Q Consensus 161 ~~~~~l~~~~nv~~tPH~a 179 (223)
+.++|||++||+++|||+|
T Consensus 160 ~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 160 PADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp STTHHHHTSTTEEEESS-T
T ss_pred CCCChHHcCCCEEEeCccC
Confidence 9999999999999999986
No 15
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=1.2e-49 Score=366.64 Aligned_cols=209 Identities=34% Similarity=0.560 Sum_probs=190.2
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
+|||+++|++..+++.+++|.|.+.. ..+.+|.||+|||||+|+||+.+|+++++|||+|++|||+. ..+.....++
T Consensus 105 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~ 181 (525)
T TIGR01327 105 AMLLAAARNIPQADASLKEGEWDRKA--FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPERAEQLGV 181 (525)
T ss_pred HHHHHHhcCHHHHHHHHHcCCccccc--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence 58999999999999999999998542 34679999999999999999999999999999999999863 3344455677
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
...+++++++++||+|++|+|++++|+++++++.|+.||+|+++||++||++||++||+++|++|+|.||+||||++||+
T Consensus 182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP 261 (525)
T ss_pred EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence 66678999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcceec
Q 027408 161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIV 213 (223)
Q Consensus 161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n~~~ 213 (223)
.++|||.+|||++|||+|++|.++++++...+++|+.+|++|+++ +.+|...
T Consensus 262 -~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~ 314 (525)
T TIGR01327 262 -TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPG 314 (525)
T ss_pred -CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCC
Confidence 578999999999999999999999999999999999999999975 4444444
No 16
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-50 Score=340.57 Aligned_cols=207 Identities=34% Similarity=0.546 Sum_probs=192.2
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
++|++++|++.++...+++|+|.+.. +.|.+|.|||+||+|+|+||+.+|++++.+||+|++||+-. +.+.++.+|+
T Consensus 113 gli~SLaR~i~~A~~s~k~g~wnr~~--~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gv 189 (406)
T KOG0068|consen 113 GLILSLARQIGQASASMKEGKWNRVK--YLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGV 189 (406)
T ss_pred HHHHHHhhhcchhheeeecCceeecc--eeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccc
Confidence 37899999999999999999999764 56899999999999999999999999999999999999854 5567778898
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
+.+ +++|+++.||||.+|+|++|+|+++++.+.|+.||+|..|||++||++||+.||+++|++|++.||++|||+.||+
T Consensus 190 q~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp 268 (406)
T KOG0068|consen 190 QLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPP 268 (406)
T ss_pred eee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCC
Confidence 876 8999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--CCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcce
Q 027408 161 PK--DHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNY 211 (223)
Q Consensus 161 ~~--~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~ 211 (223)
.. ++.|..+|||++|||+|++|.|++.+++..+.+++..|.+|.....+|.
T Consensus 269 ~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~~~~g~Vna 321 (406)
T KOG0068|consen 269 KNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYINGNSAGSVNA 321 (406)
T ss_pred ccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhccCccceech
Confidence 76 7889999999999999999999999999999999999999954444443
No 17
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-49 Score=362.85 Aligned_cols=208 Identities=34% Similarity=0.567 Sum_probs=189.6
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
++||+++|++..+++.+++|.|.+.. ..+.+|.||+|||||+|+||+.+|+++++|||+|++|||+. ..+.....++
T Consensus 107 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~ 183 (526)
T PRK13581 107 ALMLALARNIPQAHASLKAGKWERKK--FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGV 183 (526)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCCccC--ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence 58999999999999999999997542 34678999999999999999999999999999999999864 3334455677
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
... ++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||++||+++|++|+|.||+||||++||+
T Consensus 184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 184 ELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP 262 (526)
T ss_pred EEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence 766 8999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcceec
Q 027408 161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIV 213 (223)
Q Consensus 161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n~~~ 213 (223)
+ ++|||.+|||++|||+|++|.++++++...+++|+.+|++|+++ +.+|...
T Consensus 263 ~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~ 315 (526)
T PRK13581 263 T-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPS 315 (526)
T ss_pred C-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCC
Confidence 6 88999999999999999999999999999999999999999975 3444443
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=2.9e-48 Score=334.28 Aligned_cols=207 Identities=43% Similarity=0.727 Sum_probs=193.0
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
+++|.+.|++..+++++++|.|.+......+..+.||||||+|+|+||+.+|++|++||+.+.+++|++...+.+.+.+.
T Consensus 127 ~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 127 SLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred HHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc
Confidence 46899999999999999999995554456678999999999999999999999999999889999998877777777776
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
+. .++++++.++|+|++|||+|++|++++|++.+..||+|++|||++||.++|++++.++|++|+|.+++||||++||
T Consensus 207 ~~-~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP- 284 (336)
T KOG0069|consen 207 EF-VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP- 284 (336)
T ss_pred cc-cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-
Confidence 64 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCc
Q 027408 161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQ 209 (223)
Q Consensus 161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~ 209 (223)
+.++||+.++|+++|||+|+.|.+++.+|+..++.|+.+++.|++. +++
T Consensus 285 ~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 285 PVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred CCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 8889999999999999999999999999999999999999999987 443
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=8.7e-48 Score=331.86 Aligned_cols=200 Identities=24% Similarity=0.409 Sum_probs=180.2
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
++||+++|++...++.+++|.|... .+.+|+|++|||||+|+||+.+|+++++||++|++|||+.... ++
T Consensus 91 ~l~L~l~R~i~~~~~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~ 160 (303)
T PRK06436 91 ALLLAWAKNICENNYNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GI 160 (303)
T ss_pred HHHHHHHcChHHHHHHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------Cc
Confidence 5899999999999999999999853 3568999999999999999999999999999999999975321 22
Q ss_pred e-ecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408 81 K-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (223)
Q Consensus 81 ~-~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep 159 (223)
. ...++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|+++|++|++.+|+||||++||
T Consensus 161 ~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP 240 (303)
T PRK06436 161 SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP 240 (303)
T ss_pred ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence 2 145899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCeEEccCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCC
Q 027408 160 APKDHPWRYMPNQAMTPHVS-GTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG 216 (223)
Q Consensus 160 ~~~~~~l~~~~nv~~tPH~a-~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~ 216 (223)
++.++ .+|||++|||++ ++|.++.+++...+++|+.+|++|++ .|.|+.++
T Consensus 241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~---~~~V~~~~ 292 (303)
T PRK06436 241 IITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP---KNIVRKEE 292 (303)
T ss_pred CCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC---CceEchHH
Confidence 87765 579999999976 58999999999999999999999975 47776653
No 20
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-47 Score=334.41 Aligned_cols=201 Identities=20% Similarity=0.276 Sum_probs=179.3
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (223)
++||++.|++..+++.+++|.|.+.. ...+++|.|++|||||+|.||+.+|++++++|++|++||+++..... ..
T Consensus 112 ~l~L~~~R~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~ 186 (330)
T PRK12480 112 SIALQLVRRFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FL 186 (330)
T ss_pred HHHHHHHHhHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hh
Confidence 58999999999999999999765322 12467899999999999999999999999999999999997532211 12
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
....++++++++||+|++|+|++++|.++++++.++.||+|+++||++||.+||++||+++|++|++.||+||||++||+
T Consensus 187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~ 266 (330)
T PRK12480 187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAA 266 (330)
T ss_pred hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCc
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C-------------CCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408 161 P-------------KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 206 (223)
Q Consensus 161 ~-------------~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~ 206 (223)
. ..+|||.+|||++|||+|++|.++.+++...+.+|+.+|++|++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~ 325 (330)
T PRK12480 267 YFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTC 325 (330)
T ss_pred cccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2 124799999999999999999999999999999999999999875
No 21
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-45 Score=322.97 Aligned_cols=202 Identities=23% Similarity=0.331 Sum_probs=179.9
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHH-ccCCCeEEEEcCCCCChhHHHhhC
Q 027408 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETG 79 (223)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~g 79 (223)
++||++.|++...++.+++|.|.+.. ...+++|.|++|||||+|.||+++|+++ +++|++|++||++.... .. ..
T Consensus 112 ~~~l~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~-~~ 187 (332)
T PRK08605 112 TQAINLVRHFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--AA-TY 187 (332)
T ss_pred HHHHHHhcChHHHHHHHHhCCccccc-ccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--HH-hh
Confidence 47999999999999999999885322 1246799999999999999999999999 78999999999875322 11 13
Q ss_pred CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408 80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (223)
Q Consensus 80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep 159 (223)
+....++++++++||+|++|+|.++.|.++++++.++.||+|+++||++||.++|+++|+++|++|+|.||+||||+.||
T Consensus 188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep 267 (332)
T PRK08605 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER 267 (332)
T ss_pred ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence 44456899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCCCC-----------CccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408 160 --APKDH-----------PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 206 (223)
Q Consensus 160 --~~~~~-----------~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~ 206 (223)
++.++ +||.+|||++|||+|++|.++.+++...+++|+.+|++|++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~ 327 (332)
T PRK08605 268 PLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTT 327 (332)
T ss_pred CccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35554 499999999999999999999999999999999999999875
No 22
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=2.2e-42 Score=305.03 Aligned_cols=167 Identities=27% Similarity=0.483 Sum_probs=149.6
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh----h
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----T 106 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~----t 106 (223)
+.+|.|+||||||+|+||+.+|+++++|||+|++|||..... .... .+.++++++++||+|++|+|+|++ |
T Consensus 111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T 185 (378)
T PRK15438 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKDGPYKT 185 (378)
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCCccccc
Confidence 347999999999999999999999999999999999853211 1111 245899999999999999999996 9
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~ 186 (223)
.++++++.|+.||+|+++||+|||++||++||+++|++|++.+|+||||++||. .+++|+..++ ++|||+||+|.|+.
T Consensus 186 ~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~ 263 (378)
T PRK15438 186 LHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGK 263 (378)
T ss_pred ccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHH
Confidence 999999999999999999999999999999999999999999999999999996 4567876654 99999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 027408 187 LRYAAGVKDMLDRYFKGED 205 (223)
Q Consensus 187 ~~~~~~~~~~i~~~~~g~~ 205 (223)
.++..++.+|+.+|+ |.+
T Consensus 264 ~~~~~~~~~~l~~~~-~~~ 281 (378)
T PRK15438 264 ARGTTQVFEAYSKFI-GHE 281 (378)
T ss_pred HHHHHHHHHHHHHHH-cCc
Confidence 999999999999998 544
No 23
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.3e-42 Score=303.92 Aligned_cols=168 Identities=31% Similarity=0.520 Sum_probs=152.7
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCCh----hh
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KT 106 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~----~t 106 (223)
+.+|.|+||||||+|+||+.+|++++++|++|++||+..... . +...+.++++++++||+|++|+|+|+ .|
T Consensus 111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T 185 (381)
T PRK00257 111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPT 185 (381)
T ss_pred CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCccccc
Confidence 457999999999999999999999999999999999854211 1 11234589999999999999999999 59
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~ 186 (223)
.++++++.|+.||+|+++||+|||++||++||+++|++|++.+|+||||++||. .+++|+.. |+++|||+||+|.++.
T Consensus 186 ~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 186 RHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGK 263 (381)
T ss_pred cccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999996 46788875 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 027408 187 LRYAAGVKDMLDRYFKGED 205 (223)
Q Consensus 187 ~~~~~~~~~~i~~~~~g~~ 205 (223)
.++..++.+|+.+|+.+.+
T Consensus 264 ~r~~~~~~~nl~~~~~~~~ 282 (381)
T PRK00257 264 ARGTAQIYQALCRFFGIPA 282 (381)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998864
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.91 E-value=7.1e-25 Score=188.39 Aligned_cols=206 Identities=26% Similarity=0.351 Sum_probs=177.6
Q ss_pred cHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408 2 RILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (223)
Q Consensus 2 ~~l~~~R~~~~~~~~~~~~~w~~~~~-----~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 76 (223)
++|.+.|+-.+..+..++|.|..... ......+.|.+.|++|+|++|++++.++++||+.|+.||+.- ..-..+
T Consensus 139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~-~~g~~~ 217 (435)
T KOG0067|consen 139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYL-IDGIDK 217 (435)
T ss_pred HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchh-hhhhhh
Confidence 47889999999999999999964321 123356899999999999999999999999999999999854 334556
Q ss_pred hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 77 ~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
.+|...+.++++++.++|.+++|+.+++.++++++.-.+++|++|+.++|++||.++|+.+|.++|++|++++++
T Consensus 218 ~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa----- 292 (435)
T KOG0067|consen 218 SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA----- 292 (435)
T ss_pred hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-----
Confidence 678877778999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCC-CCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcceeccC
Q 027408 157 PQPAP-KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIVKA 215 (223)
Q Consensus 157 ~ep~~-~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n~~~~~ 215 (223)
|.. ...|+.+.||.++|||.++++..+..++.+.+...+.+-+.|+.. +..|-|+.|
T Consensus 293 --~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE 351 (435)
T KOG0067|consen 293 --PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKE 351 (435)
T ss_pred --CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhh
Confidence 221 345788899999999999999999999999888889888888755 556666654
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.78 E-value=1.7e-18 Score=156.20 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=103.6
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
+..|.|++++|+|+|.||+.+|++++++|++|+++++++.....+...|+.. .+++++++++|+|++|+. +.++|
T Consensus 249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atG----t~~iI 323 (476)
T PTZ00075 249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATG----NKDII 323 (476)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCC----ccccc
Confidence 3479999999999999999999999999999999987664333344456654 479999999999999864 67899
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCc
Q 027408 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW 166 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l 166 (223)
+.+.|+.||+|++++|++|+ |++.+.++|+++. ++|+++.+|......+
T Consensus 324 ~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~~~~ 372 (476)
T PTZ00075 324 TLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDRYTF 372 (476)
T ss_pred CHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCCeEEe
Confidence 99999999999999999999 7888888888754 7899999987654333
No 26
>PLN02494 adenosylhomocysteinase
Probab=99.72 E-value=3.7e-17 Score=147.23 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=105.0
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
..+.|++++|+|+|.||+.+|++++++|++|+++++++.....+...|+... +++++++.+|+|+.+.. +.++++
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI~ 324 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDIIM 324 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----CccchH
Confidence 3479999999999999999999999999999999987644344555566544 78999999999987544 678889
Q ss_pred HHHHhcCCCCcEEEEcCC-CCccCHHHHHHH--HHhCCccEEEeeCCCCC
Q 027408 112 KDRIAKMKKGVLIVNNAR-GAIMDTQAVVDA--CSSGHIAGYSGDVWNPQ 158 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~sr-g~~vd~~al~~~--L~~g~i~~a~lDv~~~e 158 (223)
.+.|+.||+|++++|++| +..||..+|.++ ++.+.++ +.+|+|+.+
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 999999999999999999 679999999998 9999998 999999874
No 27
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.66 E-value=7.3e-16 Score=137.57 Aligned_cols=120 Identities=17% Similarity=0.226 Sum_probs=103.6
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
.+.|++|+|+|+|.||+.+|+.++.+|++|+++++++.....+...|+... +++++++.+|+|+.++. +.++++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHHHH
Confidence 589999999999999999999999999999999887644444555566544 78899999999988765 5778889
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCccEEEeeCCCC
Q 027408 113 DRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNP 157 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g~i~~a~lDv~~~ 157 (223)
+.+..||+|++++|++|+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999998887777789998763
No 28
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.64 E-value=9.8e-16 Score=132.12 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=81.2
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
..|.||+|||||+|+||+++|++|+++|++|+++++...+.+.+...|+... ++++++++||+|++++|+ +.+.++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 4699999999999999999999999999999999876555455666677654 899999999999999996 67789999
Q ss_pred HHHHhcCCCCcEEEE
Q 027408 112 KDRIAKMKKGVLIVN 126 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn 126 (223)
++.++.||+|++++-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999998764
No 29
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.62 E-value=9e-16 Score=121.49 Aligned_cols=120 Identities=14% Similarity=0.255 Sum_probs=95.2
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc-HHHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-KDRI 115 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~-~~~~ 115 (223)
++|||||+|.||+.+|+.|.+.|++|.+|||++...+.+...++...+++.|+++++|+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999987555555666888889999999999999999998777766642 1278
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
+.+++|.++||++....-+...+.+.+.+..+.+...-|+.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G 122 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG 122 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec
Confidence 88999999999999999999999999998887744444444
No 30
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.60 E-value=6e-15 Score=125.88 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=110.8
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KD 113 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~ 113 (223)
++||+||+|.||..+|++|.+.|+.|.+|||++.. .+.....|.....+..|+++++|+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 48999999999999999999999999999999755 5666677888888999999999999999999999888875 57
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC
Q 027408 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 161 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~ 161 (223)
.++.+|+|+++||+|.-+......+.+.+++..+....-.|....+..
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A 128 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGA 128 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhh
Confidence 889999999999999999999999999999999986666666666543
No 31
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.54 E-value=3.9e-14 Score=122.10 Aligned_cols=123 Identities=19% Similarity=0.261 Sum_probs=101.3
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 114 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~ 114 (223)
++|||||+|.||..+|+.+...|++|.+||+++...+.....++....++++++++||+|++|+|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999986444445556776677899999999999999998777776653 346
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (223)
Q Consensus 115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep 159 (223)
++.+++++++||+++.......++.+.+.+..+.+....|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 778899999999999998888899999988777755555565544
No 32
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.53 E-value=2.8e-14 Score=122.79 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=97.3
Q ss_pred EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc-c-HHHH
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-D-KDRI 115 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i-~-~~~~ 115 (223)
+|||||+|.||..+|+.+...|++|.+||+++...+.+...|....++.++++++||+|++|+|.++.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 5899999999999999999999999999998754555556677666789999999999999999877776664 2 3467
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (223)
Q Consensus 116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~ 155 (223)
+.+++++++||+++....+..++.+.+++..+......|+
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~ 120 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS 120 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCC
Confidence 7889999999999999988899999999877664433333
No 33
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.50 E-value=1.7e-13 Score=118.48 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=97.0
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhccc---CCEEEEcCCCChhhhhcccHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~---aDvVv~~~p~~~~t~~~i~~~ 113 (223)
++|||||+|.||..+|+.+...|++|.+||+++...+.....|.....++++++++ +|+|++|+|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence 47999999999999999999999999999998644444555677777789998876 699999999877777776 46
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEee
Q 027408 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lD 153 (223)
.+..+++|.++||+++....+..++.+.+++..+. .+|
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 77889999999999999999999999999888776 355
No 34
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.49 E-value=1.7e-13 Score=118.39 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=100.2
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 114 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~ 114 (223)
++|||||+|.||..+|+.+...|++|.+||+++...+.....+.....++.+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 479999999999999999999999999999987555555555776677899999999999999997766666653 346
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157 (223)
Q Consensus 115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ 157 (223)
++.++++.++||++++.+.....+.+.+.+..+.+...-|...
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~ 124 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRT 124 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCC
Confidence 7778999999999999999999999999998888544444443
No 35
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.48 E-value=1.8e-13 Score=107.35 Aligned_cols=104 Identities=21% Similarity=0.355 Sum_probs=75.6
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
..|.||++.|+|||.+|+.+|+.|+++|++|++++..|...-.+...|++.. +++++++++|+++.++. ...++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCC----CccccC
Confidence 4689999999999999999999999999999999997744444555677654 89999999999988876 356788
Q ss_pred HHHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 027408 112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD 140 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg~~-vd~~al~~ 140 (223)
.+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999987554 55555443
No 36
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.46 E-value=3e-13 Score=116.38 Aligned_cols=96 Identities=21% Similarity=0.339 Sum_probs=79.1
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
+.++.|++++|+|+|.||+.+|+.|+++|++|.+++|++...+.+...+... .++++++++++|+|+.|+|. .
T Consensus 146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-----~ 220 (287)
T TIGR02853 146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-----L 220 (287)
T ss_pred CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-----H
Confidence 3579999999999999999999999999999999999764333333445432 24677889999999999993 4
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+++++.++.|++++++||++..+
T Consensus 221 ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 221 VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HhCHHHHhcCCCCeEEEEeCcCC
Confidence 67889999999999999999744
No 37
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.45 E-value=7.1e-13 Score=114.73 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=96.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhccc---CCEEEEcCCCChhhhhcccHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~---aDvVv~~~p~~~~t~~~i~~~ 113 (223)
++|||||+|.||+.+|+.|...|.+|.+||+++...+...+.|+....+++++++. +|+|++++|..+.+..++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 47999999999999999999999999999998754445556677777789998875 699999999776766665 46
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a 150 (223)
....++++.++||++++.......+.+.+++..+.+.
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~ 116 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence 7788999999999999999999999999999888744
No 38
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.43 E-value=6.1e-13 Score=121.77 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=104.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----CCe---ecCCHHhhccc---CCEEEEcCCCChhh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK---FEEDLDTMLPK---CDIVVVNTPLTEKT 106 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~---~~~~l~e~l~~---aDvVv~~~p~~~~t 106 (223)
.+||+||+|.||+.+|+.|...|++|.+|||++...+.+.+. |.. ...+++|+++. +|+|++++|..+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 369999999999999999999999999999986443333221 432 45789998875 99999999999988
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 161 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~ 161 (223)
..++ ...++.+++|.++||++....-+...+.+.+++..+.+...-|...++..
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA 140 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGA 140 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHh
Confidence 8887 57888999999999999999999999999999999998888888776643
No 39
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.43 E-value=1.4e-12 Score=117.31 Aligned_cols=104 Identities=20% Similarity=0.290 Sum_probs=87.7
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.....+...|+.. .+++++++.+|+|+.++. +.++++
T Consensus 208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG----~~~vI~ 282 (425)
T PRK05476 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATG----NKDVIT 282 (425)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCC----CHHHHH
Confidence 357999999999999999999999999999999998775444444556654 478999999999988764 456788
Q ss_pred HHHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 027408 112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD 140 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg~~-vd~~al~~ 140 (223)
.+.+..||+|++++|+++... +|.++|.+
T Consensus 283 ~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 283 AEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 999999999999999999876 77777754
No 40
>PLN02256 arogenate dehydrogenase
Probab=99.41 E-value=5.7e-12 Score=109.25 Aligned_cols=109 Identities=18% Similarity=0.317 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc-ccCCEEEEcCCCChhhhhccc
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~ 111 (223)
+-.+++|+|||+|.||+++|+.++..|.+|++|+++. ..+.+...|+....+.++++ .++|+|++|+|.. .+..++
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~-~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl- 109 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD-YSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVL- 109 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc-HHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHH-
Confidence 4467899999999999999999999999999999875 33455567776667888886 4799999999943 344444
Q ss_pred HHH-HhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 112 KDR-IAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 112 ~~~-~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
++. ...++++++|+|++..+-+..+++.+.+..
T Consensus 110 ~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 110 RSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred HhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 334 566899999999999776666666666644
No 41
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.38 E-value=2.5e-12 Score=110.95 Aligned_cols=119 Identities=16% Similarity=0.098 Sum_probs=96.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 114 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~ 114 (223)
++|||||+|.||..+|+.|...|++|.+||+++. .+.....|.....+..+++++||+|++|+|..+..+.++. ...
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 3799999999999999999999999999998763 3444456777777899999999999999998777666552 235
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
++.+++|.++|+++....-+...+.+.+.+..+.+...-|..
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG 121 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG 121 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 677899999999999999889999999988877744433443
No 42
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.37 E-value=5.6e-12 Score=109.07 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=94.0
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhh---cccCCEEEEcCCCChhhhhcccHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~---l~~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
++|||||+|.||..+|+.+...|++|.+|||++...+...+.+.....+++++ +.++|+|++++|.. .+..++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 47999999999999999999999999999998754444555555545566665 45689999999976 666665 56
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
....+++|.++||++.+...+...+.+.+++..+.+...-|..
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 7788999999999999998999999999988877744444443
No 43
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.36 E-value=2.9e-12 Score=111.74 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=79.1
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
..|.|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+...|+... +.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 36899999999999999999999999999998887653 34455556677655 899999999999999996655 5666
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 027408 111 DKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~srg 130 (223)
+++.+..|++|++| ..+.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 67888899999988 56666
No 44
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.36 E-value=7e-12 Score=112.45 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=89.3
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
+..+.|++|+|+|+|.||+.+|+.++.+|++|+++|+++...+.+...|+... ++++.+..+|+|+.++. +..++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i 271 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDII 271 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHH
Confidence 34579999999999999999999999999999999998766677778887654 67888899999998765 35567
Q ss_pred cHHHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 027408 111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD 140 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~srg~~-vd~~al~~ 140 (223)
+...+..||+|++++|++++.+ +|..+|..
T Consensus 272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 7888999999999999999876 77777654
No 45
>PLN02712 arogenate dehydrogenase
Probab=99.34 E-value=7.3e-12 Score=118.82 Aligned_cols=115 Identities=14% Similarity=0.209 Sum_probs=89.7
Q ss_pred CcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhh
Q 027408 29 YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTR 107 (223)
Q Consensus 29 ~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~ 107 (223)
..+.++.+++|||||+|.||+.+|+.++.+|++|.+||++.. .+.+.+.|+....++++++. ++|+|++|+|. ..+.
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~-~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~ 439 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY-SDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTE 439 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH-HHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHH
Confidence 346788999999999999999999999999999999999753 24455677766678888875 59999999994 4566
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408 108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g 145 (223)
.++.+-....||++++++|++.++-...+++.+.+..+
T Consensus 440 ~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~ 477 (667)
T PLN02712 440 KVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD 477 (667)
T ss_pred HHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence 66654444478999999999998855555555555443
No 46
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.34 E-value=5.3e-12 Score=115.27 Aligned_cols=122 Identities=14% Similarity=0.176 Sum_probs=101.9
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----C--CeecCCHHhhcc---cCCEEEEcCCCChhhh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR 107 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g--~~~~~~l~e~l~---~aDvVv~~~p~~~~t~ 107 (223)
.+|||||+|.||..+|+.|...|++|.+|||++...+...+. | +....+++++++ ++|+|++++|..+.+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999987443333221 3 335678999886 5899999999888888
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408 108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep 159 (223)
.++ ++....+++|.+|||++.+...|...+.+.+.+..+.+...-|...++
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 877 568888999999999999999999999999999999977666776654
No 47
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.31 E-value=1.1e-11 Score=107.06 Aligned_cols=95 Identities=25% Similarity=0.320 Sum_probs=80.0
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
.++.|++++|+|+|.+|+.+++.|+.+|++|.++||++...+.++..|.... .++.+.++++|+|+.++| ..+
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-----~~~ 222 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIP-----ALV 222 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCC-----hhh
Confidence 4688999999999999999999999999999999998644455556666533 467788899999999998 356
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++++.++.|++++++||++...
T Consensus 223 i~~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 223 LTKEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred hhHHHHHcCCCCcEEEEEccCC
Confidence 7899999999999999998643
No 48
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.30 E-value=8.5e-12 Score=107.35 Aligned_cols=116 Identities=13% Similarity=0.140 Sum_probs=93.1
Q ss_pred EEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHHHhcC
Q 027408 41 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRIAKM 118 (223)
Q Consensus 41 IiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~~~~m 118 (223)
|||+|.||..+|+.|...|++|.+|||++...+...+.|+....++.++++++|+|++|+|..+.+..++. ......+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999987555555566776677899999999999999997666666652 4667788
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 119 k~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
+++.++||++....-....+.+.+.+..+.+...-|+.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~G 118 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSG 118 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCC
Confidence 99999999998777777888888887777643333443
No 49
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.29 E-value=5.3e-11 Score=103.25 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=93.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCC--eecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
..++|+|||+|.||..+|+.++..|. +|.+||+++...+.+...|+ ....++++.++++|+|++|+|... ... +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~-v 82 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGA-V 82 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHH-H
Confidence 44789999999999999999998885 89999997644444555554 234577888999999999999432 222 3
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEe-eCCCCC---CCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG-DVWNPQ---PAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~l-Dv~~~e---p~~~~~~l~~~~nv~~tPH~a~~t~~~~ 186 (223)
.++....++++.++++++..+.--.+++.+.+.. .+..... .++..| |.....+++...++++||+-+ .+.+..
T Consensus 83 ~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~-~~~~~~ 160 (307)
T PRK07502 83 AAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEG-TDPAAV 160 (307)
T ss_pred HHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCC-CCHHHH
Confidence 3556677899999999876542222223222222 2221211 222211 111223566667789999654 344443
Q ss_pred H
Q 027408 187 L 187 (223)
Q Consensus 187 ~ 187 (223)
+
T Consensus 161 ~ 161 (307)
T PRK07502 161 A 161 (307)
T ss_pred H
Confidence 3
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=99.28 E-value=1.4e-11 Score=124.62 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=104.6
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc--cH
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK 112 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i--~~ 112 (223)
+.++||+||+|.||..+|+.|...|++|.+|||++...+.+...|....+++.|+.++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 4678999999999999999999999999999998765556666788888899999999999999999888888776 35
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC--ccEEEeeCCCC
Q 027408 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH--IAGYSGDVWNP 157 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~--i~~a~lDv~~~ 157 (223)
..++.+++|.++|++|....-....+.+.+++.. +.+...-|+..
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg 129 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKG 129 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCC
Confidence 6788899999999999999999999999998877 65444444543
No 51
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.27 E-value=2e-11 Score=111.48 Aligned_cols=121 Identities=10% Similarity=0.109 Sum_probs=98.1
Q ss_pred EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-----CCeecCCHHhhc---ccCCEEEEcCCCChhhhhc
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~e~l---~~aDvVv~~~p~~~~t~~~ 109 (223)
.|||||+|.||..+|+.|...|++|.+|||++...+...+. ++....++++++ +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999987444433332 244556777776 4689999999987777777
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep 159 (223)
+ .+....+++|.+|||++....-|...+.+.+++..+.+...-|...++
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 6 567788999999999999999999999999999888866666666543
No 52
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.27 E-value=1.1e-10 Score=106.04 Aligned_cols=134 Identities=19% Similarity=0.293 Sum_probs=96.3
Q ss_pred CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (223)
Q Consensus 37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~ 114 (223)
++|+||| +|.||+++|+.++..|.+|.+|++++.. .+.+...|+....+.++.+.++|+|++|+|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 8999999999999999999999987633 24455667766668888999999999999953 333333 566
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC-CCCCccCCCCeEEccCC
Q 027408 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHV 178 (223)
Q Consensus 115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~-~~~~l~~~~nv~~tPH~ 178 (223)
...+++++++++++..+....+++.+.+..+ .. .+. ..|.. +..+++....+++||+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~---~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILP---THPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEE---cCCCCCCCCcccCCCEEEEecCC
Confidence 7788999999999986655555666555432 22 222 22331 12356667788999964
No 53
>PLN02858 fructose-bisphosphate aldolase
Probab=99.26 E-value=3.3e-11 Score=121.91 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=101.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc--cH
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK 112 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i--~~ 112 (223)
..++|||||+|.||..+|+.|...|++|.+||+++...+.....|.....++.+++++||+|++|+|..+.++.++ ..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 3588999999999999999999999999999998644444555566667789999999999999999888887776 34
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh--CCccEEEeeCCCC
Q 027408 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGDVWNP 157 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~--g~i~~a~lDv~~~ 157 (223)
..++.+++|.++||+|....-....+.+.+.+ ..+.+....|...
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg 449 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGG 449 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCC
Confidence 57888999999999999998888999999988 5666444444443
No 54
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.26 E-value=1e-11 Score=89.34 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=67.8
Q ss_pred EEEEEcccHHHHHHHHHHccCC---CeEE-EEcCCCCC-hhHHHhhCCeecC-CHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFN---CNLL-YHDRVKMD-PQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G---~~V~-~~d~~~~~-~~~~~~~g~~~~~-~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
||||||+|+||+++++.+...| .+|. +++|++.. .+.++++++.... +..++++++|+|++|+| |....-+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence 7999999999999999999999 8888 55887633 3344566665555 79999999999999999 44333344
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 027408 112 KDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg 130 (223)
.+. ....++.++|+++.|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 445 667789999998765
No 55
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.25 E-value=2.5e-11 Score=103.04 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=104.9
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc-
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD- 111 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~- 111 (223)
..+.++||+||+|.||..++..|-+.|++|++|||+....+.+++.|.....++.|+.+.||+|+.++|.....+.++.
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g 111 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG 111 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence 3468899999999999999999999999999999987666777788998889999999999999999998887777653
Q ss_pred -HHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408 112 -KDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (223)
Q Consensus 112 -~~~~~~mk~ga~i-vn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep 159 (223)
...++.++++... |+.+.-...-...|.+++.....++.--.|...-+
T Consensus 112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~ 161 (327)
T KOG0409|consen 112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVK 161 (327)
T ss_pred CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCch
Confidence 3466777787777 89998888888889999998877744444444433
No 56
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.23 E-value=1.8e-10 Score=98.66 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=88.8
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-ecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~ 115 (223)
++|+|||+|.||.++|..|+..|.+|.+||+++...+.+...|.. ...+..+.++++|+|++|+|..... . +.++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~-~-~~~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLL-P-PSEQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHH-H-HHHHHH
Confidence 479999999999999999999999999999976444444444532 2222335678999999999943322 2 235667
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEe-eCCCCCCC---CCCCCccCCCCeEEccCCCCCcHHHH
Q 027408 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG-DVWNPQPA---PKDHPWRYMPNQAMTPHVSGTTIDAQ 186 (223)
Q Consensus 116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~l-Dv~~~ep~---~~~~~l~~~~nv~~tPH~a~~t~~~~ 186 (223)
..+++++++++++.-+. .+.+++........+. -++..|.. .....++....+++||+-.. +.+..
T Consensus 79 ~~l~~~~ii~d~~Svk~----~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~-~~~~~ 148 (279)
T PRK07417 79 PALPPEAIVTDVGSVKA----PIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT-DLNAL 148 (279)
T ss_pred HhCCCCcEEEeCcchHH----HHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC-CHHHH
Confidence 77899999999887442 2333333222222221 11222211 01122566778899996543 34443
No 57
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.22 E-value=4.2e-11 Score=93.67 Aligned_cols=89 Identities=21% Similarity=0.376 Sum_probs=66.9
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC-ChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh-ccc
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG-MFD 111 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~-~i~ 111 (223)
|++|+|+|||+|..|++.|..|+..|.+|++-.+... +.+.+++.|++.. +.+|+++++|+|++.+| ++... +..
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~P--D~~q~~vy~ 78 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLP--DEVQPEVYE 78 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S---HHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCC--hHHHHHHHH
Confidence 6899999999999999999999999999998887654 5667778888765 89999999999999999 33333 345
Q ss_pred HHHHhcCCCCcEEE
Q 027408 112 KDRIAKMKKGVLIV 125 (223)
Q Consensus 112 ~~~~~~mk~ga~iv 125 (223)
++....||+|+.++
T Consensus 79 ~~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 79 EEIAPNLKPGATLV 92 (165)
T ss_dssp HHHHHHS-TT-EEE
T ss_pred HHHHhhCCCCCEEE
Confidence 77888999999876
No 58
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.20 E-value=9e-11 Score=102.14 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=73.7
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
|+|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+.+.|+... +..+++++||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 579999999999999999999999999987665433 33344445677654 688899999999999994423 334456
Q ss_pred HHHhcCCCCcEEEEcCCCCcc
Q 027408 113 DRIAKMKKGVLIVNNARGAIM 133 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~v 133 (223)
+....++++. +|.++.|--+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6777888885 7888877644
No 59
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.20 E-value=2.6e-11 Score=108.73 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=80.0
Q ss_pred CCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC------CCChhHHHhhCCeecCCHHhhcccCC
Q 027408 21 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV------KMDPQLEKETGAKFEEDLDTMLPKCD 94 (223)
Q Consensus 21 ~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~------~~~~~~~~~~g~~~~~~l~e~l~~aD 94 (223)
-|.+..+......|.||+|+|||+|++|++.|..++..|.+|++--|. ..+.+.+...|+.. .+++|++++||
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~AD 99 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQAD 99 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCC
Confidence 477665544446799999999999999999999999999998733332 33344444456654 58999999999
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 027408 95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125 (223)
Q Consensus 95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv 125 (223)
+|++++|++. .+.++++.++.||+|+.+.
T Consensus 100 vVviLlPDt~--q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 100 LVINLTPDKQ--HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred EEEEcCChHH--HHHHHHHHHhhCCCCCEEE
Confidence 9999999883 6777799999999999874
No 60
>PLN02712 arogenate dehydrogenase
Probab=99.20 E-value=2.6e-10 Score=108.27 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=80.7
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc-ccCCEEEEcCCCChhhhhcccH
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
-+.++|||||+|.||+.+|+.++.+|++|.+||++. ..+.+...|+....++++++ .++|+|++|+|. ..+..++..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~-~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD-HSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 345789999999999999999999999999999974 33456667877777888866 569999999994 345555544
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
-.+..++++++|+|++.-+..-.+++.+.+..
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 33467899999999975442222334444433
No 61
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.16 E-value=1.6e-09 Score=93.11 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=94.8
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------------hCCeecCCHHhhcc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------------TGAKFEEDLDTMLP 91 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~l~e~l~ 91 (223)
++|+|||.|.||..+|..+...|.+|.+||+++...+.... .++...+++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 58999999999999999999899999999987532221110 12334578888899
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCC
Q 027408 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 171 (223)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~n 171 (223)
+||+|+.|+|...+.+..+-++..+.++++++|++.+.+ +....+.+.+... -+..++-. . .|.+..+.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf--~------~p~~~~~l 152 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHF--A------NEIWKNNT 152 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcC--C------CCCCcCCe
Confidence 999999999976666665556777788889988554433 3445666665432 23344432 1 23445677
Q ss_pred eEEccCCCCCcHHHHHH
Q 027408 172 QAMTPHVSGTTIDAQLR 188 (223)
Q Consensus 172 v~~tPH~a~~t~~~~~~ 188 (223)
+.++|+-. .+.+..++
T Consensus 153 vevv~~~~-t~~~~~~~ 168 (287)
T PRK08293 153 AEIMGHPG-TDPEVFDT 168 (287)
T ss_pred EEEeCCCC-CCHHHHHH
Confidence 88888644 34554443
No 62
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.16 E-value=5.4e-10 Score=99.09 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=90.7
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--CCe--ecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~--~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
++|+|||+|.||.++|+.++..|.+|.+|++++......... ++. ..+++++++++||+|++|+|.. .+..++ +
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl-~ 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALL-A 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHH-H
Confidence 479999999999999999999999988888776444333333 221 2356788899999999999953 344443 4
Q ss_pred HHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC---------CCCCccCCCCeEEccCCCCCc
Q 027408 113 DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---------KDHPWRYMPNQAMTPHVSGTT 182 (223)
Q Consensus 113 ~~~~-~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~---------~~~~l~~~~nv~~tPH~a~~t 182 (223)
+... .++++++|++++.-+.-..+++.+.+. .... .++.+ |.+ ....++.....++||+-. .+
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~-~~ 151 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH-TD 151 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC-CC
Confidence 4444 478999999988766433333333322 2222 23322 332 123466666788999643 33
Q ss_pred HHHHH
Q 027408 183 IDAQL 187 (223)
Q Consensus 183 ~~~~~ 187 (223)
.+..+
T Consensus 152 ~~~~~ 156 (359)
T PRK06545 152 PDAVA 156 (359)
T ss_pred HHHHH
Confidence 44433
No 63
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.16 E-value=8.2e-10 Score=96.37 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=86.6
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------h---------CCeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------T---------GAKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~l~e~l~~aDvV 96 (223)
++|||||.|.||..+|..+...|++|.+||+++...+.... . .+...+++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999997632221100 1 124567899999999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEee
Q 027408 97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (223)
Q Consensus 97 v~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lD 153 (223)
+.++|.+.+.+..+.++.-+.++++++|-..+. -+...++.+.++ +.-+..++-
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS--~l~~s~la~~~~-~p~R~~g~H 141 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIASSTS--GLLPTDFYARAT-HPERCVVGH 141 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC--ccCHHHHHHhcC-CcccEEEEe
Confidence 999999999998888899999999996644444 346677777764 333444554
No 64
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.15 E-value=7.7e-10 Score=94.56 Aligned_cols=100 Identities=16% Similarity=0.291 Sum_probs=71.2
Q ss_pred CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCCe-ecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~-~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
++|+|||+|.||+++|..|+..|. +|++||+++...+.+...|+. ...+.+++. ++|+|++|+|..... .++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~-~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAII-EIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHH-HHH-HH
Confidence 479999999999999999988775 799999976444444555653 345677765 599999999944332 222 45
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
... ++++++|++++.- ...+.+.+..
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 556 8899999997552 3445555544
No 65
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.15 E-value=2.5e-10 Score=96.86 Aligned_cols=104 Identities=13% Similarity=0.244 Sum_probs=80.0
Q ss_pred CEEEEEcccHHHHHHHHHHccCCC----eEEEE-cCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYH-DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
++|||||+|.||.++++.|...|+ +|++| +|++...+.+.+.|+....+..++++++|+|++|+| .+....++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 579999999999999999988887 88888 887644445556788777788899999999999997 33444444
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
.+....++++.++|++..| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 4555667889999988765 466666665543
No 66
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.15 E-value=1.1e-09 Score=93.68 Aligned_cols=135 Identities=20% Similarity=0.174 Sum_probs=91.5
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC--CCChhHHHhhCCeec--CCH-HhhcccCCEEEEcCCCChhhhhcc
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--KMDPQLEKETGAKFE--EDL-DTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~--~~~~~~~~~~g~~~~--~~l-~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
-++|+|+|+|.||+++|+.++..|..+.++++. ....+.+..+|+... .+. .+...++|+|++++|-. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 468999999999999999999999987555544 333344445666431 233 67778899999999933 223332
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC---CCCCccCCCCeEEccCC
Q 027408 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---KDHPWRYMPNQAMTPHV 178 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~---~~~~l~~~~nv~~tPH~ 178 (223)
++....+|+|++|++++.-+---.+++.+.+.+.. ... ...|.. ...+++....+++||.-
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~v-----g~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFV-----GGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeE-----ecCCCCCCcccccccCCCEEEEcCCC
Confidence 56666899999999999877555555555554432 222 233543 24577777889999953
No 67
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.14 E-value=1.5e-09 Score=93.40 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=83.3
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------h-----------------CCeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-----------------GAKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~l~e~l~~ 92 (223)
++|+|||+|.||..+|..+...|++|++||+++...+...+ . ++....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999997633322110 0 12345678889999
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~i-vn~srg~~vd~~al~~~L~~g~i~~a~lDv~ 155 (223)
||+|+.|+|...+.+..+..+..+.+++++++ +|+|.-. ...+.+.++ ..-+..++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~-~~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTK-RPERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC-CcccEEEEecC
Confidence 99999999987776666656677788999877 6777644 455665553 23334566655
No 68
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.11 E-value=2e-09 Score=92.87 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=77.6
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhh------------C-CeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKET------------G-AKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~------------g-~~~~~~l~e~l~~ 92 (223)
++|+|||+|.||..+|..+...|++|++||+++...+. ..+. + ....++. +.+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 58999999999999999999999999999997633221 1111 1 2233344 56799
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHh
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~ 144 (223)
||+|+.|+|.+++.+..+..+..+.++++++|+ |+|.- ....+.+.+..
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~ 133 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR 133 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence 999999999999988888788888899999887 55544 44556666543
No 69
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.10 E-value=3.1e-10 Score=97.05 Aligned_cols=103 Identities=16% Similarity=0.313 Sum_probs=78.1
Q ss_pred CEEEEEcccHHHHHHHHHHccCCC----eEEEEcCCCCChhHHH-hhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~-~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
++|||||+|+||.++++.|...|. +|+++||++...+... ++|+....+..+++++||+|++|+|. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 589999999999999999987664 6999999764433333 46776667888899999999999993 3344433
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~ 143 (223)
++....++++.++|++..|- +.+.|.+.|.
T Consensus 81 ~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGK--SIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence 45556678889999998875 5566666664
No 70
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.06 E-value=1.5e-09 Score=98.03 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=77.6
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-ecCCHHhh---------------cccCCEEEEcC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTM---------------LPKCDIVVVNT 100 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~e~---------------l~~aDvVv~~~ 100 (223)
++|+|||+|.||..+|..|+..|++|++||+++...+........ ....++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999976433332211111 11233333 34799999999
Q ss_pred CCC------hhhhhc--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408 101 PLT------EKTRGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (223)
Q Consensus 101 p~~------~~t~~~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g 145 (223)
|.. ++...+ ..+.....+++|+++|+.|.-.+-..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 953 111222 235667888999999999998888888888777653
No 71
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.06 E-value=7.8e-10 Score=96.08 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=67.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~ 114 (223)
++++|+|||+|.||+.+|+.|...|++|.+|+|+.. .+++++++++|+|++++|. +....++ +..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~-~~l 67 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA-EQV 67 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH-HHH
Confidence 568999999999999999999999999999999642 3678888999999999996 4555555 333
Q ss_pred Hh-cCCCCcEEEEcCCCCc
Q 027408 115 IA-KMKKGVLIVNNARGAI 132 (223)
Q Consensus 115 ~~-~mk~ga~ivn~srg~~ 132 (223)
.. .+++++++|++++|-.
T Consensus 68 ~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 68 QALNLPPETIIVTATKGLD 86 (308)
T ss_pred HHhcCCCCcEEEEeCCccc
Confidence 33 4788999999987543
No 72
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.06 E-value=2.4e-09 Score=87.58 Aligned_cols=109 Identities=22% Similarity=0.267 Sum_probs=84.7
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhhhc
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~~~ 109 (223)
.++.||+|+|+|+|+||+.+|+.|..+|++|+++|+++...+ ....++...+ +.++++. +||+++.|.. .++
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----ccc
Confidence 468999999999999999999999999999999998753222 2233466555 3466664 7999987776 468
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
++++.++.|+ ..+|+..+.+.+-| ..-.+.|++..+.
T Consensus 98 I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 98 INDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred cCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 8999999997 45788888887766 5666778887776
No 73
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.06 E-value=7.1e-09 Score=92.04 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=82.6
Q ss_pred CCCCEEEEEcc-cHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 34 LEGKTVGTVGC-GRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 34 l~g~~igIiG~-G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
+...+|+|||+ |.||+++|+.|+. ++.+|++||+... ...++++.+++||+|++|+|.... ..++
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~-~~~l- 68 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRHT-AALI- 68 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHH-HHHH-
Confidence 45679999999 9999999999985 5889999998421 124678889999999999993222 2222
Q ss_pred HHHHh---cCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC--CCCCccCCCCeEEccC
Q 027408 112 KDRIA---KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP--KDHPWRYMPNQAMTPH 177 (223)
Q Consensus 112 ~~~~~---~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~--~~~~l~~~~nv~~tPH 177 (223)
++... .++++++|+|++.-+. .+.+++...... +....|.. ..+.++...++++||.
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~~-----fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQAE-----VVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCCC-----EEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 34433 3799999999987552 222222222222 22334543 2345777778999986
No 74
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.5e-09 Score=89.53 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=102.1
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc---ccCCEEEEcCCCChhhhhcccHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---PKCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l---~~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
++||.||+|+||..+++++...|.+|++||+++...+.....++....++++++ ...-+|-+.+|....|..++ ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 579999999999999999999999999999998777777777887778888876 45689999999876666665 67
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ 157 (223)
+-..|.+|-++|+-+...--|.....+.|++..|. .+||-..
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS 121 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS 121 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence 77889999999999999999999999999999998 7887443
No 75
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.05 E-value=2.3e-09 Score=97.01 Aligned_cols=137 Identities=10% Similarity=0.091 Sum_probs=90.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe----------------ecCCHHhhcccCCEEEE
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----------------FEEDLDTMLPKCDIVVV 98 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~----------------~~~~l~e~l~~aDvVv~ 98 (223)
..++|||||+|.||..+|..+.. |++|++||+++...+... .|.. .+++..+.+++||++++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 34789999999999999999877 699999999874444333 1211 22333456889999999
Q ss_pred cCCCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHH-HHh-CCcc-E-EEeeCCCCCCCCCCCC-
Q 027408 99 NTPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDA-CSS-GHIA-G-YSGDVWNPQPAPKDHP- 165 (223)
Q Consensus 99 ~~p~~------~~t~~~i--~~~~~~~mk~ga~ivn~srg~~vd~~al~~~-L~~-g~i~-~-a~lDv~~~ep~~~~~~- 165 (223)
|+|.. ++...+. .+...+.+++|+++|+.|.-.+-..+.+.+. +++ ..+. + ...=+|.+||......
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~ 162 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKK 162 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccc
Confidence 99944 2223333 3466788999999999999998888876554 443 1222 1 1111366787765443
Q ss_pred --ccCCCCeE
Q 027408 166 --WRYMPNQA 173 (223)
Q Consensus 166 --l~~~~nv~ 173 (223)
+...+.++
T Consensus 163 ~~~~~~~riv 172 (425)
T PRK15182 163 HRLTNIKKIT 172 (425)
T ss_pred ccccCCCeEE
Confidence 34444443
No 76
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.04 E-value=1.2e-09 Score=93.64 Aligned_cols=106 Identities=14% Similarity=0.212 Sum_probs=77.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCC-C-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM-D-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~-~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
++++|+|||+|+||.++++.|...| .+|.+++|+.. . ......+++....+..+++++||+|++++|.... ..
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~-~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDV-AE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHH-HH
Confidence 4579999999999999999998777 67999998652 2 2233445776667888899999999999993332 22
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
++ .+....++++.+||++..|- +.+.+.+.+..
T Consensus 81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~ 113 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQK 113 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC
Confidence 22 45556678899999987654 55666666543
No 77
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.03 E-value=9.2e-09 Score=88.62 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=79.9
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------hC-------------CeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~e~l~~ 92 (223)
++|+|||.|.||..+|..+...|++|.+||+++...+.... .+ +...++++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999997533222110 12 23445665 4789
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
||+|+.++|..++.+..+-.+..+.++++++|+ |+|.- +...+.+.+.. .-+..++..+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~s~la~~~~~-~~r~~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSI---SITRLASATDR-PERFIGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC---CHHHHHhhcCC-cccEEEeeccC
Confidence 999999999877766665567778889999998 44443 33466666532 22333444443
No 78
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=99.03 E-value=1.3e-09 Score=94.66 Aligned_cols=111 Identities=19% Similarity=0.325 Sum_probs=90.0
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
-+.||++.|.|||..|+.+|.++++.|++|+++...|...-.+.-.|++.. .++++...+|+++.++- ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCccCH
Confidence 479999999999999999999999999999999887744434444566654 79999999999998886 6788999
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHHH-HHhCCcc
Q 027408 113 DRIAKMKKGVLIVNNARGAI-MDTQAVVDA-CSSGHIA 148 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~-vd~~al~~~-L~~g~i~ 148 (223)
+.+..||+|+++.|.+.=.+ ||...|.+. .+...++
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr 318 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR 318 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence 99999999999999997655 666666543 3444444
No 79
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.02 E-value=1.3e-09 Score=93.08 Aligned_cols=109 Identities=19% Similarity=0.143 Sum_probs=81.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHcc--CCCeEE-EEcCCCCC-hhHHHhhCC-eecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLL-YHDRVKMD-PQLEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~--~G~~V~-~~d~~~~~-~~~~~~~g~-~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
..++|||||+|.||+.+++.+.. .++++. ++|+++.. .+.+..++. ..++++++++.++|+|++|+|... ..
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~- 81 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LR- 81 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HH-
Confidence 35799999999999999999975 478865 78886532 233445553 456789999999999999999432 22
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+-....++.|..++..+.+.+.+.++|.++.++++..
T Consensus 82 --e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 82 --AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred --HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2234445677778888889888889999988886654
No 80
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.02 E-value=2.2e-09 Score=93.95 Aligned_cols=103 Identities=18% Similarity=0.191 Sum_probs=77.7
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--------C------CeecCCHHhhcccCCEEEEcCC
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------G------AKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------g------~~~~~~l~e~l~~aDvVv~~~p 101 (223)
.++|+|||+|.||..+|..|...|++|.+|+|++...+..... + +...++++++++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4689999999999999999999999999999975332222221 2 3345688888899999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCC-CccC--HHHHHHHHHh
Q 027408 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARG-AIMD--TQAVVDACSS 144 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg-~~vd--~~al~~~L~~ 144 (223)
... + ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~~----~--~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA----L--RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH----H--HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 441 2 6677889999999999997 3332 4556666654
No 81
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.00 E-value=1.2e-08 Score=92.16 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=77.8
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------hC-CeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~l~e~l~~aDvV 96 (223)
++|+|||+|.||..+|..|...|++|++||+++...+.... .| +...+++++++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 47999999999999999999999999999997532221111 13 44456788889999999
Q ss_pred EEcCCCChh------hhhc--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHH-HHh
Q 027408 97 VVNTPLTEK------TRGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA-CSS 144 (223)
Q Consensus 97 v~~~p~~~~------t~~~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~-L~~ 144 (223)
++|+|.... ...+ ......+.+++++++|+.|.-.+-..+.+.+. +++
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 999995432 1111 12456677899999999987666666667644 444
No 82
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.00 E-value=6.4e-09 Score=100.18 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=93.7
Q ss_pred CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHhhCCe--ecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
++|+|||+|.||.++++.++..| .+|++||+++...+.+.+.|+. ...+++++++++|+|++|+|.. ....++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 4799999987555555566653 3456888899999999999943 222222 4
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC---------CCCCccCCCCeEEccCCCC
Q 027408 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---------KDHPWRYMPNQAMTPHVSG 180 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~---------~~~~l~~~~nv~~tPH~a~ 180 (223)
+..+.++++.+|++++.-+....+.+.+.+....++ +..+-|.. .+..|+...+++++|+-..
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 455667889999999875533345555555432222 22333431 2335677778899996543
No 83
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.99 E-value=1.6e-08 Score=87.13 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=80.4
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------hC-------------CeecCCHHhh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TG-------------AKFEEDLDTM 89 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~l~e~ 89 (223)
++|+|||+|.||..+|..+...|++|++||+++...+...+ .+ +...+++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999997633221100 01 1223345 56
Q ss_pred cccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408 90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (223)
Q Consensus 90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~ 155 (223)
+++||+|+.++|...+.+..+-++.-+.++++++|++.+.| +....+.+.+.. .-+..++.-+
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~ 145 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWF 145 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecC
Confidence 78999999999976655555556666778899999887776 455667777643 2233454433
No 84
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.99 E-value=6.5e-09 Score=92.58 Aligned_cols=151 Identities=15% Similarity=0.225 Sum_probs=100.1
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhhCCe---e---cCCHHhhcccCCEEEEcCCCC-h
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAK---F---EEDLDTMLPKCDIVVVNTPLT-E 104 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~---~---~~~l~e~l~~aDvVv~~~p~~-~ 104 (223)
.+.+.+|.|+|+|.+|+..++.++.+|++|.++|+++...+.. ..++.. . ..++.+.++++|+|+.+++.. .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 3678899999999999999999999999999999875322222 233321 1 134667789999999998532 2
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCC--eEEccCCCCC-
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN--QAMTPHVSGT- 181 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~n--v~~tPH~a~~- 181 (223)
.+..+++++.++.||++.+|||++-.. .|.+. ...|...+.|.+...+ .++-||+-+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~d~------------GG~~e-------~~~~t~~d~p~~~~~Gv~~~~v~nlP~~~ 304 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAIDQ------------GGCVE-------TSRPTTHDQPTYAVHDVVHYCVANMPGAV 304 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEecCC------------CCCcc-------CCcCCCCCCCEEEECCeEEEEeCCccccc
Confidence 345578999999999999999987321 11111 1123333344444333 4666777765
Q ss_pred cHHHHHHHHHHHHHHHHHHHc
Q 027408 182 TIDAQLRYAAGVKDMLDRYFK 202 (223)
Q Consensus 182 t~~~~~~~~~~~~~~i~~~~~ 202 (223)
..++.+.++..+..-|..+.+
T Consensus 305 p~~aS~~~~~~l~~~l~~~~~ 325 (370)
T TIGR00518 305 PKTSTYALTNATMPYVLELAN 325 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666665
No 85
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.99 E-value=6.7e-09 Score=80.77 Aligned_cols=111 Identities=17% Similarity=0.280 Sum_probs=79.9
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCCh-hHHHhhCC----eecCCHHhhcccCCEEEEcCCCChh-
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKETGA----KFEEDLDTMLPKCDIVVVNTPLTEK- 105 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~-~~~~~~g~----~~~~~l~e~l~~aDvVv~~~p~~~~- 105 (223)
++.+++|+|+|+|.||+.+++.+...| .+|.++|++.... +..+..+. ....+.+++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 467899999999999999999998885 7899999975332 23334343 1345777888999999999996553
Q ss_pred hhh-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 106 t~~-~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
... .+.. ..++++.+++|++..+... .+.+.+++..+.
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~ 134 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK 134 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence 111 2222 2368999999998765443 777777776553
No 86
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.99 E-value=1.9e-08 Score=86.88 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=76.7
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 027408 48 GKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (223)
Q Consensus 48 G~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga 122 (223)
|+.+|+.|...|++|++||+++... +.....|+...++..++++++|+|++|+|..+.+..++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 8899999999999999999875321 23556688888899999999999999999888787776 56889999999
Q ss_pred EEEEcCCCCccCHHHHHHHHHh
Q 027408 123 LIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 123 ~ivn~srg~~vd~~al~~~L~~ 144 (223)
++||+|. ++.+.+++.|+.
T Consensus 111 IVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred EEEECCC---CCHHHHHHHHHH
Confidence 9999975 556677777666
No 87
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.98 E-value=9.6e-09 Score=91.63 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=69.3
Q ss_pred CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
..++|+||| +|.||+++|+.|+..|+.|.+||++.. .+.++++++||+|++|+|.... ..++ ++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~~-~~~~-~~ 161 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHLT-EEVI-AR 161 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHHH-HHHH-HH
Confidence 558999999 999999999999999999999998531 2567788899999999995543 3333 44
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHH
Q 027408 114 RIAKMKKGVLIVNNARGAIMDTQAVVDA 141 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~vd~~al~~~ 141 (223)
... ++++++|++++.-+..-..++.+.
T Consensus 162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 162 LPP-LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred HhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence 445 899999999977553333344443
No 88
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.98 E-value=1.2e-08 Score=94.10 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=78.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-------------------hhC-CeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-------------------ETG-AKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-------------------~~g-~~~~~~l~e~l~~aDvV 96 (223)
++|||||+|.||..+|..+...|++|.+||+++...+... ..+ +...+++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5899999999999999999999999999999763322111 112 45667899999999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 97 v~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
+.++|...+.+..+-.+.-+.++++++|.+.+.|- +...+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi--~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSGF--LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCC
Confidence 99999877666655556666678887665554443 35567776644
No 89
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.98 E-value=2.4e-08 Score=85.60 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=77.9
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhhC-------------CeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~e~l~~ 92 (223)
++|+|||.|.||..+|..+...|++|+++|+++...+. ..+.+ +...++.++ +++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 57999999999999999999999999999987633211 11112 233455554 789
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
||+|++|+|.+...+..+-++..+.++++++|+..+.| +....+.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999977776666667777888999988555555 566678777743
No 90
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.97 E-value=2.4e-08 Score=86.77 Aligned_cols=106 Identities=11% Similarity=0.128 Sum_probs=73.9
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhhC-------------CeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~e~l~~ 92 (223)
++|+|||.|.||..+|..+...|++|++||+++...+.. ...| +....++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999975322211 1223 2455788899999
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
||+|+.++|...+.+..+-.+.-+..++..++.+.+. ......+.+.+..
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~ 132 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAG 132 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCC
Confidence 9999999997655544444444344555555543333 3446667777754
No 91
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.96 E-value=8.5e-09 Score=88.78 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=82.6
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhhC-------------CeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~e~l~~ 92 (223)
++|||||.|.||..+|..+...|++|++||+++...+. ..+.| +...+++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999998643322 11112 2245677 45799
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
||+|+-|+|.+.+.+..+..+.-+.+ ++++++++.+.+-.+ .++..++.. .-+..++..|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~ 146 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFN 146 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCC
Confidence 99999999999998888776666666 889999877765544 444444432 22334555444
No 92
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.95 E-value=2.2e-08 Score=86.89 Aligned_cols=105 Identities=13% Similarity=0.215 Sum_probs=73.7
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----hC--------------CeecCCHHhhcccCCEEE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TG--------------AKFEEDLDTMLPKCDIVV 97 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g--------------~~~~~~l~e~l~~aDvVv 97 (223)
++|+|||+|.||..+|..+...|++|++||++....+...+ .+ +...+++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 58999999999999999999999999999987533222211 11 234457888899999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408 98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (223)
Q Consensus 98 ~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~ 143 (223)
+|+|...+....+..+.-..++++++|+..+.| +....+.+.+.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 999966543333334444556777777655544 34567777664
No 93
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.93 E-value=3.7e-09 Score=91.93 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=71.9
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--------------CCeecCCHHhhcccCCEEEEcCCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~e~l~~aDvVv~~~p~ 102 (223)
++|+|||+|.||..+|..|...|.+|.+|++++...+..... ++....+++++++++|+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 479999999999999999999999999999975333323222 244456788888999999999995
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v 133 (223)
..+..++ .+..+.+++++++|+++.|--.
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 3444443 4566677889999999866443
No 94
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.92 E-value=3e-09 Score=83.66 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=65.4
Q ss_pred EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--------------CCeecCCHHhhcccCCEEEEcCCCC
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~e~l~~aDvVv~~~p~~ 103 (223)
||+|+|.|++|.++|..+...|.+|..|.|++...+...+. .+...++++++++++|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 69999999999999999999999999999975222211111 1234578999999999999999932
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
...-+-++...+++++..+|+++.|=
T Consensus 81 --~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 --AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp --GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred --HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 22233466777778899999998764
No 95
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.92 E-value=4.8e-10 Score=85.09 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=57.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEE-EcCCCCChhHHH-hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~-~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
.-.+|+|||.|++|..+++.|...|+.|.. |+|+..+.+.+. ..+...+.+++++++++|++++++|++.-. -+.+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~--~va~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIA--EVAE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHH--HHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHH--HHHH
Confidence 457899999999999999999999999875 567653333332 233344557889999999999999965332 2334
Q ss_pred HHHhc--CCCCcEEEEcC
Q 027408 113 DRIAK--MKKGVLIVNNA 128 (223)
Q Consensus 113 ~~~~~--mk~ga~ivn~s 128 (223)
++... .++|.+++.+|
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 55444 68999999996
No 96
>PRK07680 late competence protein ComER; Validated
Probab=98.92 E-value=7.1e-09 Score=88.50 Aligned_cols=103 Identities=10% Similarity=0.250 Sum_probs=74.9
Q ss_pred CEEEEEcccHHHHHHHHHHccCCC----eEEEEcCCCCChhHH-Hhh-CCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLE-KET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~-~~~-g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
++|+|||+|.||+.+++.|...|. +|.+++|++...+.. ..+ ++....+..+++.++|+|++++|.. ....++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHH
Confidence 479999999999999999987773 799999976332222 223 5665668888899999999999822 233333
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~ 143 (223)
++....++++.+||+++.| ++.+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4555667788999999855 36777766654
No 97
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.89 E-value=5.2e-09 Score=89.15 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
-+.||.+.|.|+|.+|+..|+.|++||.+|++....+-..-.+.-.|++. ..++|++++.|+++.++- .+.+|..
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTG----c~dii~~ 285 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTG----CKDIITG 285 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccC----CcchhhH
Confidence 36899999999999999999999999999999988764444444456664 589999999999988876 6778999
Q ss_pred HHHhcCCCCcEEEEcCCCCc
Q 027408 113 DRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~ 132 (223)
+.|.+||+++++.|++.-.+
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHhCcCCcEEeccccccc
Confidence 99999999999999986553
No 98
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.89 E-value=2.7e-08 Score=89.14 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=81.9
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----------------hCCe--ecCCHHhhcccCCEEEE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------TGAK--FEEDLDTMLPKCDIVVV 98 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----------------~g~~--~~~~l~e~l~~aDvVv~ 98 (223)
++|+|||+|.||..+|..++. |++|++||+++...+.... .+.. ...+..+++++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 479999999999999977764 9999999997643332221 1121 22346677899999999
Q ss_pred cCCCChh----------hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCC
Q 027408 99 NTPLTEK----------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH 164 (223)
Q Consensus 99 ~~p~~~~----------t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~ 164 (223)
|+|...+ ....+ +...+ +++|.++|+.|.-.+-..+.+.+.+.+..+. |.+|...+..
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~ 147 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGK 147 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCc
Confidence 9995411 11111 33444 7999999999999988888898887664332 3556554433
No 99
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.88 E-value=8.9e-09 Score=88.67 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=68.5
Q ss_pred cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||+|+|||.| .||+.+|..|...|+.|++|++.. .++.++.++||+|+++++.. .
T Consensus 153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~ 214 (301)
T PRK14194 153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----R 214 (301)
T ss_pred hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----h
Confidence 3568999999999996 999999999999999999998753 16889999999999999843 3
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCc
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
.+.... +|+|+++||++...+
T Consensus 215 ~v~~~~---ik~GaiVIDvgin~~ 235 (301)
T PRK14194 215 LIDADW---LKPGAVVIDVGINRI 235 (301)
T ss_pred cccHhh---ccCCcEEEEeccccc
Confidence 444443 899999999986553
No 100
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.88 E-value=1.2e-08 Score=88.14 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=103.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhhhcccHH
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
.-.+|||||+|++|+-+|+.+...|..++.+||+. -.+.++++|...++.+.++++ +.|+|++|+.. ..+..++-.-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilaty 128 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATY 128 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhc
Confidence 45689999999999999999999999999999976 567778889888889999885 59999999862 2222333222
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCC
Q 027408 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~ 181 (223)
=++++|.|++++++..-+....+++.+.|-+.-..-..-..|. |....+.+..+|=|+. -|-.++
T Consensus 129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfG--Pksvnh~wqglpfVyd-kvRig~ 193 (480)
T KOG2380|consen 129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFG--PKSVNHEWQGLPFVYD-KVRIGY 193 (480)
T ss_pred CchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcC--CCcCCCccccCceEEE-Eeeccc
Confidence 3456889999999999998888999998866533322333333 3334556666664444 454444
No 101
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.87 E-value=4.9e-08 Score=90.30 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=85.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhhC-------------CeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~e~l~~ 92 (223)
++|||||+|.||..||..+...|++|++||+++...+.. .+.| +....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 689999999999999999999999999999986433221 1223 345567766 569
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~i-vn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ 157 (223)
||+|+.++|.+.+.+..+..+.-+.+++++++ .|+|.-.+ ..+..++.. .-+..++..|.+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~P 148 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNP 148 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCC
Confidence 99999999999888888777766677899999 48876554 456666543 223356665553
No 102
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.86 E-value=5.3e-09 Score=80.25 Aligned_cols=96 Identities=26% Similarity=0.375 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCC-ChhHHHhhC---C--eecCCHHhhcccCCEEEEcCCCChh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKM-DPQLEKETG---A--KFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~-~~~~~~~~g---~--~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
++.++++.|+|.|.+|+.++..|...|++ |++++|+.. ..+.++.++ + ...+++.+.+.++|+|+.++|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999997 999999852 333444442 2 2345666778999999999984433
Q ss_pred hhhcccHHHHhcCCCCc-EEEEcCCCC
Q 027408 106 TRGMFDKDRIAKMKKGV-LIVNNARGA 131 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga-~ivn~srg~ 131 (223)
.+.++.++..++.. +++|.+...
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-
T ss_pred ---ccCHHHHHHHHhhhhceeccccCC
Confidence 67788887766543 788886544
No 103
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.86 E-value=1.4e-08 Score=86.03 Aligned_cols=103 Identities=12% Similarity=0.257 Sum_probs=73.7
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCe---EEEEcCCCCChhH-HHhh-CCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQL-EKET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~---V~~~d~~~~~~~~-~~~~-g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
++|||||+|+||+++++.+...|.. +.+++|+....+. ...+ ++....+.+++++++|+|++++|. .....++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence 4799999999999999999877753 5788886533322 2333 455667888999999999999992 2333333
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g 145 (223)
++ + .++++.++|+++- -+..+.|.+.+..+
T Consensus 79 ~~-l-~~~~~~~vis~~a--g~~~~~l~~~~~~~ 108 (258)
T PRK06476 79 RA-L-RFRPGQTVISVIA--ATDRAALLEWIGHD 108 (258)
T ss_pred HH-h-ccCCCCEEEEECC--CCCHHHHHHHhCCC
Confidence 22 2 2568899999873 47778888877654
No 104
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.83 E-value=2.5e-08 Score=85.51 Aligned_cols=104 Identities=14% Similarity=0.260 Sum_probs=73.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCCC-hh-HHHhh-CCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMD-PQ-LEKET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~-~~-~~~~~-g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
++|+|||+|.||.++++.+...| .+|.+|+++... .+ ..... ++....+..++++++|+|++|+| +....-
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp--p~~~~~ 79 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP--PLAVLP 79 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC--HHHHHH
Confidence 47999999999999999998777 679999986421 11 12223 23334678888999999999999 332222
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
+-.+....++++..||++..| ++.+.|.+.+..
T Consensus 80 vl~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~ 112 (277)
T PRK06928 80 LLKDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG 112 (277)
T ss_pred HHHHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 224444556788899999888 666778777643
No 105
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.82 E-value=2.1e-08 Score=79.81 Aligned_cols=82 Identities=28% Similarity=0.380 Sum_probs=69.8
Q ss_pred cCCCCCEEEEEcccHH-HHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408 32 YDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 32 ~~l~g~~igIiG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
..|.|++|.|||.|.+ |..+|+.|...|.+|.+++|+. .++.+.+.++|+||.+++.. +++
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii 101 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLV 101 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----cee
Confidence 4699999999999996 8889999999999999999852 36778899999999999832 267
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccC
Q 027408 111 DKDRIAKMKKGVLIVNNARGAIMD 134 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~srg~~vd 134 (223)
.++. ++++.++||++...-+|
T Consensus 102 ~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 102 KGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred cHHH---ccCCeEEEEccCCCccc
Confidence 7765 57899999999998877
No 106
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.82 E-value=3.4e-08 Score=91.22 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=86.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhhC-------------CeecCCHHhhc
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTML 90 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~e~l 90 (223)
+=++|||||.|.||..||..+...|++|.+||+++...+.. .+.| +...+++++ +
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence 34679999999999999999999999999999986433211 1112 334567766 4
Q ss_pred ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (223)
Q Consensus 91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep 159 (223)
.+||+|+.++|.+.+.+..+..+.-+.++++++|. |+|.-. ...+.+.+.. ..+..++..|.+-|
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~---i~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS---ITAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC---HHHHHHhcCc-ccceEEEeccCccc
Confidence 69999999999888888877777767788888876 565433 3566666643 33456777655433
No 107
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.82 E-value=1.7e-08 Score=85.74 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=71.0
Q ss_pred CEEEEEcccHHHHHHHHHHccCC---CeEEEEcCCCCChhHHHh-hCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~-~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
++|+|||+|.||+.++..+...| .+|.+++|++...+.... +++....+.++++.++|+|++|+|.. ....+ .+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v-~~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEV-LS 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHH-HH
Confidence 58999999999999999998878 689999997643333333 46666678888889999999999822 12222 23
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~ 143 (223)
+....+ +.+||++..|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 333333 46788887654 5666666654
No 108
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.81 E-value=3.4e-08 Score=82.72 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCC---Ce-EEEEcCC-CC-ChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRV-KM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G---~~-V~~~d~~-~~-~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
..++|+|||+|+||++++..+...| .+ +++++++ +. .......+++....+++++++++|+|++++| +....
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp--~~~~~ 80 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMP--PSAHE 80 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecC--HHHHH
Confidence 3578999999999999999987665 33 7778764 22 2233344566666788899999999999999 33222
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g 145 (223)
-+-++.-..++ +.+||+++-| ++.+.|.+.+..+
T Consensus 81 ~v~~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 81 ELLAELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HHHHHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 22233333344 6789999877 4555676666544
No 109
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.80 E-value=1.8e-08 Score=91.94 Aligned_cols=112 Identities=11% Similarity=0.070 Sum_probs=95.1
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-----CCeecCCHHhhccc---CCEEEEcCCCChhhhhcccHHHHhcC
Q 027408 47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDRIAKM 118 (223)
Q Consensus 47 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~e~l~~---aDvVv~~~p~~~~t~~~i~~~~~~~m 118 (223)
||+.+|+.|...|++|.+|||++...+...+. ++....+++++++. +|+|++++|..+.+..++ ...+..+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 79999999999999999999987444444332 46677899999874 899999999998888887 5788999
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (223)
Q Consensus 119 k~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep 159 (223)
.+|.++||.+....-|...+.+.+++..+.+...-|...++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999999999999999999999877777777654
No 110
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.79 E-value=2.8e-08 Score=84.67 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=73.8
Q ss_pred CEEEEEcccHHHHHHHHHHccC--CCe-EEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~--G~~-V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
++|||||+|.||+.+++.+... +++ +.++|+++... +..+.++...+.++++++.++|+|++|+|. .... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~--~~~~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV--NAVE---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh--HHHH---H
Confidence 4899999999999999998765 466 55788875322 233445666677999999999999999982 2221 2
Q ss_pred HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCcc
Q 027408 113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA 148 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~vd~---~al~~~L~~g~i~ 148 (223)
-....++.|..++..+.|.+.|. +.|.++.++++..
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 22334456667777888877764 3566666665543
No 111
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.79 E-value=2e-08 Score=85.18 Aligned_cols=99 Identities=19% Similarity=0.334 Sum_probs=78.7
Q ss_pred CEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
++|||||+|+||++++..+...| .+|++.+|+.... ....++++...++.+++..++|+|++++. |.. -
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence 58999999999999999998888 5799999987444 36667877656677889999999999997 432 2
Q ss_pred HHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH
Q 027408 112 KDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS 143 (223)
Q Consensus 112 ~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~ 143 (223)
++.++.++ ++.+||+++.|- ..+.|.+.|.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcC
Confidence 55666665 689999998875 5566777765
No 112
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.74 E-value=3.4e-08 Score=79.41 Aligned_cols=114 Identities=13% Similarity=0.163 Sum_probs=78.5
Q ss_pred EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH------------------------hhCCeecCCHHhhcccC
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK------------------------ETGAKFEEDLDTMLPKC 93 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~------------------------~~g~~~~~~l~e~l~~a 93 (223)
+|+|||.|.||+.+|..+...|++|..||+++...+... ...+...++++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999999763221110 01234567899888 99
Q ss_pred CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (223)
Q Consensus 94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~ 155 (223)
|+|+-++|.+.+.+.-+.++.-+.++++++|...+. -+....|...+. ..-+..++-.|
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS--sl~i~~la~~~~-~p~R~ig~Hf~ 138 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTS--SLSISELAAALS-RPERFIGMHFF 138 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S--SS-HHHHHTTSS-TGGGEEEEEE-
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCC--CCCHHHHHhccC-cCceEEEEecc
Confidence 999999998888888787888888999999866544 345566666654 34445565544
No 113
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.73 E-value=4.5e-08 Score=83.44 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=72.6
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
-|.||+|+|||||+-|.+-|..|+..|.+|++=-|.. .+.+.+.+.|++.. +.+|+.+++|+|.+.+|+..+ ..+..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q-~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQ-KEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence 4899999999999999999999999999977655544 34567777788755 899999999999999995443 33445
Q ss_pred HHHHhcCCCCcEE
Q 027408 112 KDRIAKMKKGVLI 124 (223)
Q Consensus 112 ~~~~~~mk~ga~i 124 (223)
++.-..|++|+.+
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 5777889988854
No 114
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.72 E-value=5.9e-08 Score=83.07 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=69.0
Q ss_pred ccCCCCCEEEEEcccHH-HHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.|+++.|||.|.+ |+.+|..|...|+.|+++... ..++.+.+++||+|+.+++ +.++
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG----~~~~ 214 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVG----KRNV 214 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCC----CcCc
Confidence 56799999999999988 999999999999999987642 1368889999999999999 4567
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCc
Q 027408 110 FDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
++. +.+|+|+++||++...+
T Consensus 215 i~~---~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 215 LTA---DMVKPGATVIDVGMNRD 234 (285)
T ss_pred cCH---HHcCCCCEEEEcccccc
Confidence 776 56899999999997653
No 115
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.68 E-value=9.3e-08 Score=82.45 Aligned_cols=80 Identities=26% Similarity=0.369 Sum_probs=66.3
Q ss_pred ccCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEc-CCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD-RVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 31 ~~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
+.++.||+|+||| .|.||+.+|.+|...|+.|.+|+ ++. ++++++++||+|+++++...
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~---- 213 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE---- 213 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----
Confidence 4579999999999 99999999999999999999996 432 47888999999999999433
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCc
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
.+.... +++|+++||++--.+
T Consensus 214 ~v~~~~---lk~GavVIDvGin~~ 234 (296)
T PRK14188 214 MVKGDW---IKPGATVIDVGINRI 234 (296)
T ss_pred hcchhe---ecCCCEEEEcCCccc
Confidence 344333 899999999986553
No 116
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=8.9e-07 Score=78.07 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=119.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhh----CCeecCCHHhhc---ccCCEEEEcCCCChhhhh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~----g~~~~~~l~e~l---~~aDvVv~~~p~~~~t~~ 108 (223)
..||+||+|-||+.+|......|++|.+|||+.... +..++. .+....+++|++ +.---|++.+........
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 469999999999999999999999999999987333 333332 244556788775 456777777764322222
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHH
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 188 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~ 188 (223)
.| ++++..|.+|-++||-+...--|...-.+.|.+..|.+.+.-|...|--+-..|- + +-|-+++++++
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-------i---MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-------I---MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-------c---CCCCCHHHHHH
Confidence 33 7888999999999999999999999999999999999999999988854322221 1 34678999988
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 027408 189 YAAGVKDMLDRYFKGEDF 206 (223)
Q Consensus 189 ~~~~~~~~i~~~~~g~~~ 206 (223)
+.- +.+.|.+-..|+|.
T Consensus 153 v~p-il~~IaAk~~g~pC 169 (473)
T COG0362 153 VAP-ILTKIAAKVDGEPC 169 (473)
T ss_pred HHH-HHHHHHhhcCCCCc
Confidence 765 44557777778775
No 117
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.63 E-value=1.4e-07 Score=78.04 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=63.6
Q ss_pred CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------hCC--e-ecCCHHhhcccCCEEEEcCCCCh
Q 027408 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------TGA--K-FEEDLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~--~-~~~~l~e~l~~aDvVv~~~p~~~ 104 (223)
++|+||| .|.||+.++..|...|.+|.+++|++...+.... .++ . ...+..+.++++|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 5799997 8999999999999999999999987533222111 111 1 12366788899999999999332
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIM 133 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~v 133 (223)
...++ ++....++ +.++|+++.|--.
T Consensus 81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 81 -VLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred -HHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 22222 33323343 5899999887544
No 118
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.62 E-value=5e-07 Score=77.77 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=74.0
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-----------ecCCHHhhcccCCEEEEcCCCChh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------FEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
++|+|||.|.||..+|..|...|.+|.+++|+....+...+.|.. ...+.+++ +.+|+|++++|.. .
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 479999999999999999999999999999865333333333431 13445555 8899999999943 2
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+..+ -+...+.+.+++.||....| +-..+.+.+.+....+.
T Consensus 79 ~~~~-~~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAA-LPSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHH-HHHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 3332 24455566777888888776 33455666666555554
No 119
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.61 E-value=1.2e-06 Score=72.96 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=101.4
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCe---EEEEcCCC----CC--------hhHHHhhCCeec-CCHHhhcccCCE
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVK----MD--------PQLEKETGAKFE-EDLDTMLPKCDI 95 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~---V~~~d~~~----~~--------~~~~~~~g~~~~-~~l~e~l~~aDv 95 (223)
..+.+++|.|+|.|.+|+.+|..|...|+. |+++||+. .. .+.++..+.... .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 468999999999999999999999988974 99999983 21 112333321111 267788889999
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC-ccEEEeeCCCCCCCCCCCCccCCCCeEE
Q 027408 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH-IAGYSGDVWNPQPAPKDHPWRYMPNQAM 174 (223)
Q Consensus 96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~-i~~a~lDv~~~ep~~~~~~l~~~~nv~~ 174 (223)
|+.++| .++++++.++.|.++.++...+... .+.-+.++.+.|. +..-+. + ....+..|+++
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga~i~a~G~-----~-----~~~~Q~nn~~~ 163 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGADIVATGR-----S-----DFPNQVNNVLG 163 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCCcEEEeCC-----C-----CCccccceeee
Confidence 999987 5678889999999999999888443 3443444444433 232221 1 12235678999
Q ss_pred ccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 027408 175 TPHVSGT-----TIDAQLRYAAGVKDMLDRYFK 202 (223)
Q Consensus 175 tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~ 202 (223)
-|=++-. ...-.+.|...+.+.|..+..
T Consensus 164 fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 164 FPGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred cchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 9976632 222234455556666666554
No 120
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.61 E-value=2.6e-07 Score=81.45 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=73.3
Q ss_pred HHHHHHHHccCCCeEEEEcCCCC-----ChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 027408 48 GKLLLQRLKPFNCNLLYHDRVKM-----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (223)
Q Consensus 48 G~~iA~~l~~~G~~V~~~d~~~~-----~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga 122 (223)
|..+|..|...|++|++||+++. ..+.....|+....+..+++++||+|++++|....+..++ ......+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78899999888999999999763 1123445677767788899999999999999655456655 56778889999
Q ss_pred EEEEcCCCCccCH-HHHHHHHH
Q 027408 123 LIVNNARGAIMDT-QAVVDACS 143 (223)
Q Consensus 123 ~ivn~srg~~vd~-~al~~~L~ 143 (223)
+|||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999876655 55556664
No 121
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.61 E-value=1.8e-07 Score=80.13 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=66.7
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||+|+|||. |.+|+.+|..|...|+.|++|.... .++.+.+++||+|+.+++. .+
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVI~avg~----~~ 213 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVARKADILVVAIGR----GH 213 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEecCc----cc
Confidence 356899999999999 9999999999999999999984321 2688899999999999983 23
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++.... +|+|+++||++-..
T Consensus 214 ~v~~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 214 FVTKEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred cCCHHH---ccCCcEEEEeccee
Confidence 454443 89999999998655
No 122
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.60 E-value=1.2e-07 Score=85.82 Aligned_cols=96 Identities=26% Similarity=0.407 Sum_probs=71.4
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCC-hhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMD-PQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~-~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.|++|+|+|+|.||+.+++.|...| .+|++++|+... .+.+..++... ..++.+.+.++|+|+.|++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 488999999999999999999999999 679999997633 33445555322 24667788899999999873 345
Q ss_pred cccHHHHhcCC----CCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMK----KGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk----~ga~ivn~srg~ 131 (223)
+++.+.++.+. ...+++|.+...
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 67777776642 235788887544
No 123
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.59 E-value=2.2e-07 Score=80.95 Aligned_cols=96 Identities=26% Similarity=0.334 Sum_probs=68.1
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCC-ChhHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKM-DPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~-~~~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.+++|+|||.|.||+.+++.++..| .+|++++|++. ..+.+.+++.... +++.+.+.++|+|+.++|.... . .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~-~ 253 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-A-K 253 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-H-H
Confidence 78999999999999999999998866 57999999863 3355666665432 3466778899999999984433 1 2
Q ss_pred ccHHHHhcC-CCCcEEEEcCCCC
Q 027408 110 FDKDRIAKM-KKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~m-k~ga~ivn~srg~ 131 (223)
+.+..++.. +++.++||++...
T Consensus 254 ~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 254 IVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred HHHHHHhhCCCCCeEEEEeCCCC
Confidence 223333333 3567888887543
No 124
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.59 E-value=2.5e-07 Score=75.44 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=65.3
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhH-HHhhCCe-ecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQL-EKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~-~~~~g~~-~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
++++|+|.|+||..+|+++.+.|++|++-+++. ++.+. ++.++.. ...+.++..+.+|+|++++|..... . +.++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~-~-v~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIP-D-VLAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHH-h-HHHH
Confidence 689999999999999999999999998886654 22222 2222221 2347888999999999999943322 1 2355
Q ss_pred HHhcCCCCcEEEEcCCC
Q 027408 114 RIAKMKKGVLIVNNARG 130 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg 130 (223)
....++ |.++|+++-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 555555 8999999875
No 125
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.59 E-value=2.1e-06 Score=78.87 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=88.5
Q ss_pred CEEEEEcccHHHHHHHHHHccC--CCeEEEEcCCCCChhHHH----------------h-h--CCeecCCHHhhcccCCE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK----------------E-T--GAKFEEDLDTMLPKCDI 95 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~----------------~-~--g~~~~~~l~e~l~~aDv 95 (223)
++|+|||+|.+|..+|..|+.. |++|+++|.++...+... + . .....++.++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 6899999999999999999866 588999998653222111 0 0 13344567788899999
Q ss_pred EEEcCC--CC---------hhhhhc--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEee-CCCCCCCC
Q 027408 96 VVVNTP--LT---------EKTRGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP 161 (223)
Q Consensus 96 Vv~~~p--~~---------~~t~~~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lD-v~~~ep~~ 161 (223)
+++|+| .. ++...+ ..++.-+.++++.+||.-|.-.+=..+.+.+.|.+.. .|.-.. +|.+|-+.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 999986 21 111122 2345667789999999999888877788888877631 111111 14556444
Q ss_pred CCC---CccCCCCeEE
Q 027408 162 KDH---PWRYMPNQAM 174 (223)
Q Consensus 162 ~~~---~l~~~~nv~~ 174 (223)
+.. .+...|+|++
T Consensus 161 ~G~a~~d~~~p~riVi 176 (473)
T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCcccccCCCCEEEE
Confidence 433 3444555553
No 126
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.58 E-value=2.2e-07 Score=85.49 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--CC-------------------------
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED------------------------- 85 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~------------------------- 85 (223)
.+.+.++.|+|+|.+|...++.++.+|.+|+++|++....+.++.+|...+ +.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 456789999999999999999999999999999998755566666665431 10
Q ss_pred HHhhcccCCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 86 LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 86 l~e~l~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
+.+.++++|+|+.++ |..+ ...++.++.++.||+|++|||++-
T Consensus 241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 445578899998887 2211 235788999999999999999975
No 127
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.58 E-value=4.1e-07 Score=79.79 Aligned_cols=107 Identities=19% Similarity=0.301 Sum_probs=75.1
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-----------------ecCCHHhhcccCCEEEEc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------------FEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~l~e~l~~aDvVv~~ 99 (223)
++|+|||.|.||..+|..|...|++|.+++|++. .+...+.+.. ...+. +.+..+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 5799999999999999999999999999998542 2222333321 12334 567889999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+|... ...++ ++..+.++++.+|+++..| +...+.+.+.+...++.
T Consensus 81 vk~~~-~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 81 VKSAA-TADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred ecCcc-hHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 98543 33333 5566677889999888654 44556677777665543
No 128
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=6.8e-07 Score=78.93 Aligned_cols=157 Identities=18% Similarity=0.298 Sum_probs=103.4
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-------------------HhhC-CeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-------------------KETG-AKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-------------------~~~g-~~~~~~l~e~l~~aDvV 96 (223)
.+|||||+|-||-.+|..+...|++|+++|.++...+.. ...| +...++.++ ++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence 799999999999999999999999999999876422211 1122 334445544 4599999
Q ss_pred EEcCCCChhhh-------hcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CccEEEeeC---CCCCCCCC
Q 027408 97 VVNTPLTEKTR-------GMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDV---WNPQPAPK 162 (223)
Q Consensus 97 v~~~p~~~~t~-------~~i--~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g--~i~~a~lDv---~~~ep~~~ 162 (223)
++|+| ||-+. .+. .+...+.|++|.++|--|.-..=..+.+...|.+. .+. ..-|. |.+|-..+
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 99998 33222 111 24567889999999999998888888888887664 333 33454 45554444
Q ss_pred CCCccCCCCeEEccC-CCCCcHHHHHHHHHHHHHHHHHHHcC
Q 027408 163 DHPWRYMPNQAMTPH-VSGTTIDAQLRYAAGVKDMLDRYFKG 203 (223)
Q Consensus 163 ~~~l~~~~nv~~tPH-~a~~t~~~~~~~~~~~~~~i~~~~~g 203 (223)
.+.+...-| .|. +||.|..+.+.. ..-.+.+++|
T Consensus 167 G~~~~el~~---~~kVIgG~tp~~~e~a----~~lY~~iv~~ 201 (436)
T COG0677 167 GNVLKELVN---NPKVIGGVTPKCAELA----AALYKTIVEG 201 (436)
T ss_pred Cchhhhhhc---CCceeecCCHHHHHHH----HHHHHHheEE
Confidence 445443322 343 577887776543 2333445555
No 129
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.57 E-value=2.8e-07 Score=79.02 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=67.6
Q ss_pred ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.+|.|+++.|||.|. +|+.+|..|...|+.|++++++. .++.+.+++||+|+.+++. .++
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~ 214 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGL 214 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----Ccc
Confidence 4579999999999988 99999999999999999988632 2678889999999999982 335
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+.++. +|+|+++||++-..
T Consensus 215 i~~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTKDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred cCHHH---cCCCcEEEEcCCCc
Confidence 66654 68999999998755
No 130
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.56 E-value=7.4e-07 Score=76.86 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=74.3
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-------------ecCCHHhhcccCCEEEEcCCCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------------~~~~l~e~l~~aDvVv~~~p~~ 103 (223)
++|+|+|.|.||..+|..|...|.+|.+++| ....+...+.+.. ..++.++....+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4799999999999999999998999999998 4322322332321 1335566678899999999943
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
.+..++ ++....++++.+||.+.-| +-..+.+.+.+.+.++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 222322 4445556778888887665 44466777777665544
No 131
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.55 E-value=4.9e-07 Score=76.73 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=77.9
Q ss_pred HHHHHccCC--CeEEEEcCCCCChhHHHhhCCee-cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 027408 51 LLQRLKPFN--CNLLYHDRVKMDPQLEKETGAKF-EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 51 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~~-~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~ 127 (223)
+|+.|+..| .+|++||+++...+.+.+.|+.. ..+..+.++++|+|++|+|. ....-+-++....++++++|+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~--~~~~~~l~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV--SAIEDVLEEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H--HHHHHHHHHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH--HHHHHHHHHhhhhcCCCcEEEEe
Confidence 577787777 78999999876666666777642 22225788999999999993 33223346777789999999999
Q ss_pred CCCCccCHHHHHHHHHhCCccEEE-eeCCCCC---CCCCCCCccCCCCeEEccCCC
Q 027408 128 ARGAIMDTQAVVDACSSGHIAGYS-GDVWNPQ---PAPKDHPWRYMPNQAMTPHVS 179 (223)
Q Consensus 128 srg~~vd~~al~~~L~~g~i~~a~-lDv~~~e---p~~~~~~l~~~~nv~~tPH~a 179 (223)
+.-+.--.+++.+.+. ....+.+ -..|.+| |...+..++...++++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 8866544555555555 2233233 3334443 223355788888999999765
No 132
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.55 E-value=1.2e-07 Score=76.64 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=70.2
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH--------------------hhCCeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------------------ETGAKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--------------------~~g~~~~~~l~e~l~~aDvV 96 (223)
|+|+|||+|.+|..+|..+...|++|+++|.++...+... ..++...++.++.++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 6899999999999999999999999999998753211111 01234456788889999999
Q ss_pred EEcCCCChhhhhc--------ccHHHHhcCCCCcEEEEcCCCCccCHHHHH-HHHHhC
Q 027408 97 VVNTPLTEKTRGM--------FDKDRIAKMKKGVLIVNNARGAIMDTQAVV-DACSSG 145 (223)
Q Consensus 97 v~~~p~~~~t~~~--------i~~~~~~~mk~ga~ivn~srg~~vd~~al~-~~L~~g 145 (223)
++|+|......+. .-+...+.++++.++|.-|.-.+=..+.+. ..|++.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhh
Confidence 9999822111111 134666778999999999998887777544 445543
No 133
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.54 E-value=6.8e-07 Score=63.09 Aligned_cols=67 Identities=31% Similarity=0.456 Sum_probs=56.2
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
..+.+++++|+|.|.+|+.++..+... +.+|.++|+ |+++.+++. ...+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~----~~~~ 68 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPA----GVPV 68 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCC----CCCc
Confidence 358899999999999999999999988 568999987 999999983 3345
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 027408 111 DKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~s 128 (223)
.++....++++.++++++
T Consensus 69 ~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 69 LEEATAKINEGAVVIDLA 86 (86)
T ss_pred hHHHHHhcCCCCEEEecC
Confidence 555688899999999874
No 134
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.53 E-value=2.3e-07 Score=84.16 Aligned_cols=96 Identities=25% Similarity=0.402 Sum_probs=69.8
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.|++|+|+|.|.||+.+++.+...|. +|++++|++.. ...+..++... ..++.+.+.++|+|+.|+|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 4789999999999999999999999998 79999997633 33555555332 245667788999999998733 34
Q ss_pred cccHHHHhcC-----CCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKM-----KKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~m-----k~ga~ivn~srg~ 131 (223)
++..+.++.+ +.+.+++|++-..
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 5666666543 2456778876433
No 135
>PLN00203 glutamyl-tRNA reductase
Probab=98.53 E-value=2.3e-07 Score=85.87 Aligned_cols=96 Identities=21% Similarity=0.340 Sum_probs=71.7
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhh-CC----eecCCHHhhcccCCEEEEcCCCChh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKET-GA----KFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~-g~----~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
.+.+++|+|||.|.||+.+++.|...|. +|++++|+.... ..+..+ +. ...+++.+.+.++|+|+.++| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 4889999999999999999999999997 699999986333 333333 22 123466778899999999987 3
Q ss_pred hhhcccHHHHhcCCC-------CcEEEEcCCCC
Q 027408 106 TRGMFDKDRIAKMKK-------GVLIVNNARGA 131 (223)
Q Consensus 106 t~~~i~~~~~~~mk~-------ga~ivn~srg~ 131 (223)
...++.++.++.+++ ..++||++-..
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 455788888887643 24788887654
No 136
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.52 E-value=3.3e-07 Score=79.56 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=70.6
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------hCCeecCCHHhhcccCCEEEEcCCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g~~~~~~l~e~l~~aDvVv~~~p~ 102 (223)
++|+|+|.|.+|.++|+.+...|.+|..|.|++...+.... .++...++++++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 68999999999999999999999999999986421111110 1234457899999999999999992
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHH
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~a 137 (223)
+...-+-++....+++++.+|+++.|=-.+.-.
T Consensus 82 --~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~ 114 (329)
T COG0240 82 --QALREVLRQLKPLLLKDAIIVSATKGLEPETGR 114 (329)
T ss_pred --HHHHHHHHHHhhhccCCCeEEEEeccccCCCcc
Confidence 111112233334567899999999876554333
No 137
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.52 E-value=4.6e-07 Score=76.92 Aligned_cols=98 Identities=20% Similarity=0.343 Sum_probs=65.6
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
+.++|+|||+|+||.++++.+...+ .++++++++... .+.....+..+++.++|+|++|+| |....-+
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavk--p~~~~~v 73 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVK--PDLAGKV 73 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeC--HHHHHHH
Confidence 3478999999999999999998665 248899886522 233445577788889999999998 3332222
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~ 143 (223)
-.+....+++ ..+|++..|- +.+.+.+.+.
T Consensus 74 l~~i~~~l~~-~~iIS~~aGi--~~~~l~~~~~ 103 (260)
T PTZ00431 74 LLEIKPYLGS-KLLISICGGL--NLKTLEEMVG 103 (260)
T ss_pred HHHHHhhccC-CEEEEEeCCc--cHHHHHHHcC
Confidence 2344444554 4566665554 3555555553
No 138
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.51 E-value=2.5e-07 Score=73.45 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=68.7
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe---e-----------------------cCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK---F-----------------------EED 85 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~---~-----------------------~~~ 85 (223)
..+...+|.|+|.|++|+..++.++++|++|..+|......+..+..+.. . ...
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 35778999999999999999999999999999999865322222222221 1 124
Q ss_pred HHhhcccCCEEEEcCC-CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 86 LDTMLPKCDIVVVNTP-LTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 86 l~e~l~~aDvVv~~~p-~~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
+.+.++.+|+|+.++- .......++.++.++.||++.+|+|+|-
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 6677889999986432 3455667899999999999999999963
No 139
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.46 E-value=8.7e-07 Score=78.75 Aligned_cols=99 Identities=12% Similarity=0.149 Sum_probs=68.3
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCC-------CeEEEEcCCCCC-----hhHHHh--------------hCCeecCCHH
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKMD-----PQLEKE--------------TGAKFEEDLD 87 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~~-----~~~~~~--------------~g~~~~~~l~ 87 (223)
..-++|+|||.|.+|.++|..+...| .+|..|.+++.. .+.... .++...++++
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 34579999999999999999998665 789999886531 111111 1233457888
Q ss_pred hhcccCCEEEEcCCCChhhhhcccHHHHh--cCCCCcEEEEcCCCCccC
Q 027408 88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIA--KMKKGVLIVNNARGAIMD 134 (223)
Q Consensus 88 e~l~~aDvVv~~~p~~~~t~~~i~~~~~~--~mk~ga~ivn~srg~~vd 134 (223)
++++++|+|++++| ++...-+-++.-. .+++++++|+++.|=-.+
T Consensus 89 eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 89 EAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccC
Confidence 99999999999999 3332222233333 456677999998875443
No 140
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.46 E-value=5.9e-07 Score=79.18 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=67.5
Q ss_pred EEEEEcccHHHHHHHHHHccCC--------CeEEEEcCCCC--ChhHHHh-----------------hCCeecCCHHhhc
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKM--DPQLEKE-----------------TGAKFEEDLDTML 90 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G--------~~V~~~d~~~~--~~~~~~~-----------------~g~~~~~~l~e~l 90 (223)
+|+|||.|++|.++|..+...| .+|..|.+... ..+..+. .++...+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998777 89999987320 1111110 0123446899999
Q ss_pred ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccC
Q 027408 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 134 (223)
Q Consensus 91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd 134 (223)
++||+|++++| +....-+-.+.-..++++..+|+++.|=-.+
T Consensus 81 ~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 99999999999 3222223355556778899999999885443
No 141
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.43 E-value=4.7e-07 Score=79.21 Aligned_cols=136 Identities=17% Similarity=0.233 Sum_probs=91.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-C-----CHHhhcccCCEEEEcCCCChhhhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-E-----DLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~-----~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.|++|+|+|+|..|....+.++++|++|+++|++..+.+.++++|...+ . ..+++-+.+|+|+.+++ ....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~-- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL-- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence 4999999999999999999999999999999999888888889887532 1 12222233999999998 3322
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHH
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD-HPWRYMPNQAMTPHVSGTTIDAQL 187 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~-~~l~~~~nv~~tPH~a~~t~~~~~ 187 (223)
...++.++++..++-++-.. .+|.+.. ....-+.++-+..++.+.-.|.++
T Consensus 243 ---~~~l~~l~~~G~~v~vG~~~-------------------------~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e 294 (339)
T COG1064 243 ---EPSLKALRRGGTLVLVGLPG-------------------------GGPIPLLPAFLLILKEISIVGSLVGTRADLEE 294 (339)
T ss_pred ---HHHHHHHhcCCEEEEECCCC-------------------------CcccCCCCHHHhhhcCeEEEEEecCCHHHHHH
Confidence 56778888888887774321 0111111 112334566667766766666666
Q ss_pred HHHHHHHHHHHHHH
Q 027408 188 RYAAGVKDMLDRYF 201 (223)
Q Consensus 188 ~~~~~~~~~i~~~~ 201 (223)
.+.......|+..+
T Consensus 295 ~l~f~~~g~Ikp~i 308 (339)
T COG1064 295 ALDFAAEGKIKPEI 308 (339)
T ss_pred HHHHHHhCCceeeE
Confidence 55444444444444
No 142
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=5e-07 Score=77.75 Aligned_cols=143 Identities=14% Similarity=0.146 Sum_probs=95.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeec-CC------HHhhcccCCEEEEcCCCChhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFE-ED------LDTMLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~-~~------l~e~l~~aDvVv~~~p~~~~t 106 (223)
.|+.+||+|+|.+|..-.+.++++|++|+++|++. +.++..+.+|.+.+ .+ .+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~-a- 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL-A- 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec-c-
Confidence 89999999999999999999999999999999986 55556666887532 22 224445567777666522 1
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~ 186 (223)
.+.+ +..++.||++..+|-++-.+ .|...+-..+.+..+.+.-.+-|+..|.+
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg~p~--------------------------~~~~~~~~~lil~~~~I~GS~vG~~ket~ 311 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVGLPE--------------------------KPLKLDTFPLILGRKSIKGSIVGSRKETQ 311 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEeCcC--------------------------CcccccchhhhcccEEEEeeccccHHHHH
Confidence 2222 67788888888887775322 13333333344556666666667778887
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q 027408 187 LRYAAGVKDMLDRYFKGEDF 206 (223)
Q Consensus 187 ~~~~~~~~~~i~~~~~g~~~ 206 (223)
+.+......+|..+++--++
T Consensus 312 E~Ldf~a~~~ik~~IE~v~~ 331 (360)
T KOG0023|consen 312 EALDFVARGLIKSPIELVKL 331 (360)
T ss_pred HHHHHHHcCCCcCceEEEeh
Confidence 77666555666555554444
No 143
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.42 E-value=1e-06 Score=72.37 Aligned_cols=98 Identities=27% Similarity=0.418 Sum_probs=70.6
Q ss_pred CEEEEEcccHHHHHHHHHHccC--CCe-EEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~--G~~-V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
++|||||||.||+.+.+.++.- +++ +.+||++... .+.....+....++++|++++.|+|+-|.. ++ .+-+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~---Av~e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PE---AVRE 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HH---HHHH
Confidence 4799999999999999999753 455 7899997632 233444455455899999999999999987 22 2223
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHH
Q 027408 113 DRIAKMKKGVLIVNNARGAIMDTQAVV 139 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~vd~~al~ 139 (223)
-..+.++.|.-+|-+|-|.+.|+.-+.
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l~e 102 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGLRE 102 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHHHH
Confidence 344556777777778888888765543
No 144
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.41 E-value=1.9e-06 Score=73.79 Aligned_cols=80 Identities=19% Similarity=0.325 Sum_probs=66.2
Q ss_pred ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.||++.|||.|. +|+.+|..|...|+.|+++.... .++++.+++||+|+.+++- .++
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~----p~~ 215 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGK----PGF 215 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCC----ccc
Confidence 4689999999999998 99999999999999999987632 3688999999999999951 134
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+.. +.+|+|+++||++-..
T Consensus 216 v~~---~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG---EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH---HHcCCCcEEEEccccc
Confidence 554 5578999999998544
No 145
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.40 E-value=1e-06 Score=81.24 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--CC-------------------------
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED------------------------- 85 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~------------------------- 85 (223)
...+.+|.|+|.|.+|...++.++.+|.+|+++|+++...+.++++|.... +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 357999999999999999999999999999999998766777778887532 11
Q ss_pred HHhhcccCCEEEEcCCCCh-hhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 86 LDTMLPKCDIVVVNTPLTE-KTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 86 l~e~l~~aDvVv~~~p~~~-~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
+.+.++++|+|+.|+.... ....++.++.++.||+|..|++++-
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0112357999998875311 1223456899999999999999974
No 146
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.38 E-value=2.1e-06 Score=74.94 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=64.6
Q ss_pred CCCCEEEEEcccHHHHHHHHHHcc-CC-CeEEEEcCCCCChh-HHHhh---C--CeecCCHHhhcccCCEEEEcCCCChh
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQ-LEKET---G--AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~-~~~~~---g--~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
...++|+|||+|.+|+.+++.+.. ++ .+|.+|+|++...+ .++++ + +..+.+.++++++||+|+.++|..
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 467899999999999999986643 45 57999999864333 33332 3 445678999999999998888744
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
..++.. +.+++|+++.-++.
T Consensus 201 -~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 -EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred -CCEecH---HHcCCCCEEEeeCC
Confidence 445554 45689996555543
No 147
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.37 E-value=9.9e-07 Score=79.04 Aligned_cols=98 Identities=26% Similarity=0.386 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC-CChhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK-MDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~-~~~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.|.++++.|||+|.||..+|+.|...|. +|++.+|+. +..+++++++..+ ++++.+.+.++|+|+.++. ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 4899999999999999999999999995 699999986 4455677888543 4566778899999999975 2345
Q ss_pred cccHHHHhcC-C--CCcEEEEcCCCCcc
Q 027408 109 MFDKDRIAKM-K--KGVLIVNNARGAIM 133 (223)
Q Consensus 109 ~i~~~~~~~m-k--~ga~ivn~srg~~v 133 (223)
++..+.+... + +.-++||.+-+.-+
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPRdi 279 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPRDV 279 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCCCC
Confidence 6666555443 1 22578888765533
No 148
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.37 E-value=1.5e-06 Score=76.14 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=67.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHcc-C-CCeEEEEcCCCCChhHH-H---hhC--CeecCCHHhhcccCCEEEEcCCCChhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKP-F-NCNLLYHDRVKMDPQLE-K---ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~-~---~~g--~~~~~~l~e~l~~aDvVv~~~p~~~~t 106 (223)
.-+++||||+|.+|+..++.+.. + ..+|.+|||+....+.+ . +++ +..+.+.++++++||+|++|+|..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~--- 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR--- 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence 46889999999999998877753 2 34699999986433322 2 335 345689999999999999999843
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
..++..+ .+|+|+.|..++...
T Consensus 204 ~P~~~~~---~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 204 KPVVKAD---WVSEGTHINAIGADA 225 (325)
T ss_pred CcEecHH---HcCCCCEEEecCCCC
Confidence 4556554 459999999998543
No 149
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.36 E-value=2.6e-07 Score=76.17 Aligned_cols=110 Identities=11% Similarity=0.132 Sum_probs=72.6
Q ss_pred CCCEEEEEcccHHHHHHHHHH--ccCCCeEE-EEcCCCCChh-HHHhhCCeecCCHHhhccc--CCEEEEcCCCChhhh-
Q 027408 35 EGKTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTR- 107 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l--~~~G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~e~l~~--aDvVv~~~p~~~~t~- 107 (223)
...+|+|||+|.+|+.+++.+ ...|+++. ++|+++.... ......+...+++++++++ .|.|++|+|......
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i 162 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV 162 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence 456899999999999999863 45688866 6776542111 1111112233567787754 999999999655421
Q ss_pred --hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 108 --GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 108 --~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
.+.......-+....+.+|+.+|.+|+.++|..+|..
T Consensus 163 ~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 163 ADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred HHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 1111112233445678889999999999999998865
No 150
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.35 E-value=5.7e-06 Score=79.71 Aligned_cols=115 Identities=13% Similarity=0.141 Sum_probs=84.7
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l~~ 92 (223)
++|+|||.|.||..||..+...|++|..||+++...+... + ..+...++++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 5899999999999999999999999999999763322100 0 0133345664 4689
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~ 155 (223)
||+|+-++|.+.+.+.-+..+.-+.++++++|.+.+. -+....|.+.+. ..-+..++--|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~-~p~r~~g~Hff 452 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS--TISISLLAKALK-RPENFCGMHFF 452 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcC-CCccEEEEecC
Confidence 9999999999888888888888899999999855443 355666777764 33445566644
No 151
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.35 E-value=2.1e-06 Score=73.57 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=53.5
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCCh-hHHHhhCC----eecCCHHhhcccCCEEEEcCCCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKETGA----KFEEDLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~-~~~~~~g~----~~~~~l~e~l~~aDvVv~~~p~~ 103 (223)
..+.++++.|+|.|.+|++++..|...| .+|.+++|+.... +.++.++. ....+..+.+.++|+||.++|..
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 4688999999999999999999999999 6899999975322 23333221 11113456778899999999954
No 152
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.35 E-value=6.5e-06 Score=71.30 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=84.2
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------hhC-------------CeecCCHHhhcc
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ETG-------------AKFEEDLDTMLP 91 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~e~l~ 91 (223)
-++|||||.|.||+.+|..+..-|++|..+|+++...+... +.| +....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 47899999999999999999887799999999843211100 001 12223333 678
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
+||+|+-++|-+.+.+.-+.++.-...+++++|-.-++ -+.-.++.+++ +..-++.++--|.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTS--sl~it~ia~~~-~rper~iG~HFfN 143 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTS--SLSITELAEAL-KRPERFIGLHFFN 143 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccC--CCCHHHHHHHh-CCchhEEEEeccC
Confidence 99999999999888888888888888999999843333 35567778877 4454566766554
No 153
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.34 E-value=1.7e-06 Score=76.34 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=65.3
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh---------------CCeecCCHHhhcccCCEEEEcCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------------GAKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---------------g~~~~~~l~e~l~~aDvVv~~~p 101 (223)
++|+|||.|.+|..+|..|...| .+..|.+++...+...+. ++...+++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 68999999999999999999888 677777654222111110 12234677888899999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v 133 (223)
. ..+.. +-++....++++..+|++..|=-.
T Consensus 87 s-~~~~~-vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 87 S-HGFRG-VLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred H-HHHHH-HHHHHHhhcCCCCEEEEEEeCCcC
Confidence 2 22222 234555667888889999886433
No 154
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.33 E-value=2.2e-06 Score=74.91 Aligned_cols=93 Identities=14% Similarity=0.242 Sum_probs=63.0
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------h-------CCeecCCHHhhc-ccCCEEEEcCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-------GAKFEEDLDTML-PKCDIVVVNTP 101 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------~-------g~~~~~~l~e~l-~~aDvVv~~~p 101 (223)
++|+|||.|.||..+|..|...|.+|.+|+|++...+...+ . ++....++++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 47999999999999999999999999999986422111111 0 122335666766 58999999999
Q ss_pred CChhhhhcccHHHHh-cCCCCcEEEEcCCCC
Q 027408 102 LTEKTRGMFDKDRIA-KMKKGVLIVNNARGA 131 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~-~mk~ga~ivn~srg~ 131 (223)
.. .+..++ ++... .++++..++....|-
T Consensus 81 s~-~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQ-QLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HH-HHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 32 222222 34444 667777777777664
No 155
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.33 E-value=1.6e-06 Score=78.34 Aligned_cols=94 Identities=15% Similarity=0.320 Sum_probs=67.5
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC-ChhHHHhhC-Ce--ecCCHHhhcccCCEEEEcCCCChhhh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-DPQLEKETG-AK--FEEDLDTMLPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~-~~~~~~~~g-~~--~~~~l~e~l~~aDvVv~~~p~~~~t~ 107 (223)
.+.|++|.|||.|.||+.+++.|...|. +|++++|+.. ...++..++ .. .++++.+.+.++|+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5889999999999999999999999996 6999999853 334445544 32 2356677889999999999732 3
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCC
Q 027408 108 GMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
.++..+... .+..++||.+-..
T Consensus 255 ~vi~~~~~~--~~~~~~iDLavPR 276 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISIPQ 276 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCCCC
Confidence 456655542 2335667776543
No 156
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.33 E-value=2.2e-06 Score=67.62 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=57.8
Q ss_pred ccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.||++.|||-+ .+|+.++..|...|+.|..++... .++++.+++||+|+.++. ..++
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G----~~~~ 92 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVG----KPNL 92 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SS----STT-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeec----cccc
Confidence 457999999999997 599999999999999999888642 378888999999999997 2344
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCc
Q 027408 110 FDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
+.. ..+|+|+++||++.-..
T Consensus 93 i~~---~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IKA---DWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-G---GGS-TTEEEEE--CEEE
T ss_pred ccc---ccccCCcEEEecCCccc
Confidence 543 35799999999987654
No 157
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.33 E-value=3e-06 Score=72.82 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=65.3
Q ss_pred ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.|+++.|+|.|. +|+.+|..|...|+.|+++++.. .++.+.++++|+|+.+++ .+ ..
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG-~~---~~ 215 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVG-KP---EL 215 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccC-CC---Cc
Confidence 4679999999999998 99999999999999999998721 256677789999999996 22 25
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+..+. +++|++++|++-..
T Consensus 216 v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 216 IKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred CCHHH---cCCCCEEEEEEEee
Confidence 66544 79999999997544
No 158
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.32 E-value=2.1e-06 Score=73.58 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=66.7
Q ss_pred ccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.||+|.|||-| .+|+.+|..|...|+.|.++.... .++.+.+++||+|+.+++ ..++
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG----~p~~ 213 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVG----KPDL 213 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecC----CCCc
Confidence 568999999999999 999999999999999999886422 246788999999999997 3456
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+..+.+ |+|+++||++...
T Consensus 214 i~~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 214 IKASMV---KKGAVVVDIGINR 232 (285)
T ss_pred CCHHHc---CCCcEEEEeeccc
Confidence 666654 8999999998655
No 159
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.6e-05 Score=69.47 Aligned_cols=158 Identities=13% Similarity=0.169 Sum_probs=118.2
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-H-HHhh---CCeecCCHHhhc---ccCCEEEEcCCCChhhhh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-L-EKET---GAKFEEDLDTML---PKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~-~~~~---g~~~~~~l~e~l---~~aDvVv~~~p~~~~t~~ 108 (223)
..||+||++-||+.++......|+.|.+|+|+....+ . +.+. .+....++++++ +.-.+|++.+........
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4699999999999999999999999999999863332 2 1111 233456888886 456778887765555444
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHH
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 188 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~ 188 (223)
+| +++..+|.+|-+||+-+...--|...-.+.|.+..|.+.+.-|...|.-+...|-+ +-|.+.+++.+
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl----------MpGg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL----------MPGGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc----------CCCCChHHHHH
Confidence 44 78889999999999999999999999999999999999999999888544333321 34677899988
Q ss_pred HHHHHHHHHHHHH-cCCCC
Q 027408 189 YAAGVKDMLDRYF-KGEDF 206 (223)
Q Consensus 189 ~~~~~~~~i~~~~-~g~~~ 206 (223)
+...+.. |..-. .|+|.
T Consensus 156 ik~ifq~-iaakv~~~epC 173 (487)
T KOG2653|consen 156 IKDIFQK-IAAKVSDGEPC 173 (487)
T ss_pred HHHHHHH-HHHHhcCCCCC
Confidence 7765544 44443 55554
No 160
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.32 E-value=8.4e-06 Score=62.93 Aligned_cols=80 Identities=25% Similarity=0.332 Sum_probs=66.3
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.|++|.|+|- ..+|+.+|..|...|+.|..++.+. .++++.+++||+|+.+++.. ++
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~ 84 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EK 84 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Cc
Confidence 45799999999996 6789999999999999999998642 26788899999999999843 45
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++.+. +|+|++++|++...
T Consensus 85 i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred cCHHH---cCCCCEEEEcCCCc
Confidence 66554 78999999998655
No 161
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.29 E-value=2.7e-06 Score=68.91 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=64.5
Q ss_pred cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhh----CC--ee--c---CCHHhhcccCCEEEE
Q 027408 32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKET----GA--KF--E---EDLDTMLPKCDIVVV 98 (223)
Q Consensus 32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~----g~--~~--~---~~l~e~l~~aDvVv~ 98 (223)
..+.++++.|+|. |.+|+.+++.+...|.+|.+++|+....+ ..... +. .. . +++.+.++++|+|+.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 4688999999995 99999999999988999999998752211 11111 11 11 1 233467889999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133 (223)
Q Consensus 99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v 133 (223)
++|....+ . ...-...+++.+++|+.+...+
T Consensus 104 at~~g~~~--~--~~~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 104 AGAAGVEL--L--EKLAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CCCCCcee--c--hhhhcccCceeEEEEccCCCCC
Confidence 98844431 1 1111234457788888776644
No 162
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=3.1e-06 Score=72.52 Aligned_cols=80 Identities=26% Similarity=0.354 Sum_probs=65.8
Q ss_pred cccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.|+++.|||.|. +|+.+|..|...|+.|.+++... .++.+.+++||+|+.++. ..+
T Consensus 158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG----~p~ 219 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATG----VKH 219 (287)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccC----Ccc
Confidence 35679999999999998 99999999999999999988532 367888999999999876 124
Q ss_pred cccHHHHhcCCCCcEEEEcCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg 130 (223)
++..+ .+|+|+++||++..
T Consensus 220 ~i~~~---~vk~gavVIDvGin 238 (287)
T PRK14176 220 LIKAD---MVKEGAVIFDVGIT 238 (287)
T ss_pred ccCHH---HcCCCcEEEEeccc
Confidence 56555 57899999999864
No 163
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.29 E-value=5.1e-06 Score=70.33 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=68.4
Q ss_pred CEEEEEcccHHHHHHHHHHccC---CCeE-EEEcCCCCChhHHHhhCCeecCCHHhh-cccCCEEEEcCCCChhhhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF---NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~---G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~e~-l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
++|||||||.||+.+++.+..- ++++ .++++.+...+.... .+..+.+++++ ....|+|+-|.+ ...+-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~-----~~av~ 76 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAG-----QQAIA 76 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCC-----HHHHH
Confidence 6899999999999999998653 3554 456665422221211 25567889997 478999999998 22333
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHh
Q 027408 112 KDRIAKMKKGVLIVNNARGAIMDT---QAVVDACSS 144 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg~~vd~---~al~~~L~~ 144 (223)
+-..+.++.|.-++-.|-|.+-|. +.|.++.++
T Consensus 77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 333444567788888888998873 445554444
No 164
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.29 E-value=9.6e-06 Score=77.96 Aligned_cols=115 Identities=14% Similarity=0.039 Sum_probs=83.5
Q ss_pred CEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhcc
Q 027408 37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLP 91 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l~ 91 (223)
++|+|||.|.||..+|..+. ..|++|..||+++...+... + ..+...++++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 58999999999999999887 57999999999753211100 0 1233445664 578
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (223)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~ 155 (223)
+||+|+-++|.+.+.+.-+..+.-+.++++++|...+. -+....|.+.+. ..-+..++.-|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS--~l~i~~la~~~~-~p~r~~g~Hff 444 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTS--SLPIGQIAAAAS-RPENVIGLHYF 444 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCC--CCCHHHHHHhcC-CcccEEEEecC
Confidence 99999999999888888888888889999998854443 345566777764 33345666644
No 165
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.28 E-value=2.6e-06 Score=72.82 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=67.8
Q ss_pred ccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.|+++.|+|.+ ..|+.+|..+...|+.|..+..+. .++.+.+++||+|+.+++. .++
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk----~~l 208 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGK----AGF 208 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCc----ccc
Confidence 468999999999998 999999999999999999887532 3688899999999999972 256
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+.++.+ |+|+++||++-..
T Consensus 209 v~~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 209 ITPDMV---KPGATVIDVGINQ 227 (279)
T ss_pred cCHHHc---CCCcEEEEeeccc
Confidence 777774 9999999998654
No 166
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.27 E-value=4e-06 Score=73.46 Aligned_cols=88 Identities=26% Similarity=0.287 Sum_probs=62.5
Q ss_pred EEEEcccHHHHHHHHHHcc-CCCeEEEEcC-CCCCh-hHHHhhCC------------------eecCCHHhhcccCCEEE
Q 027408 39 VGTVGCGRIGKLLLQRLKP-FNCNLLYHDR-VKMDP-QLEKETGA------------------KFEEDLDTMLPKCDIVV 97 (223)
Q Consensus 39 igIiG~G~iG~~iA~~l~~-~G~~V~~~d~-~~~~~-~~~~~~g~------------------~~~~~l~e~l~~aDvVv 97 (223)
|||+|||+||+.+++.+.. -++++.+++. .+... ..+..+++ ....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999864 4688765543 22111 22332332 12346899999999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 98 ~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
.|+| .+.+..+.+.+..++.+++|+..-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence 9987 4566788899999998888876543
No 167
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.27 E-value=1e-05 Score=77.96 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=85.0
Q ss_pred CCEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhc
Q 027408 36 GKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTML 90 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l 90 (223)
=++|+|||.|.||..+|..+. ..|++|..+|+++...+... + ..+...+++ +.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGF 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence 368999999999999999988 77999999998753221110 0 013334566 457
Q ss_pred ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (223)
Q Consensus 91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~ 155 (223)
++||+|+-++|.+.+.+.-+..+.-+.++++++|.+.+. -++...|.+.+.. .-+.+++.-|
T Consensus 388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS--~l~i~~la~~~~~-p~r~ig~Hff 449 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTS--SLPIGQIAAAAAR-PEQVIGLHYF 449 (708)
T ss_pred ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHHhcCc-ccceEEEecC
Confidence 899999999999888888888888899999999965444 4566667777643 3345666655
No 168
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.27 E-value=1.1e-05 Score=77.60 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=83.8
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l~~ 92 (223)
++|+|||.|.||..||..+...|++|..+|+++...+... + ..+....+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 5899999999999999999999999999998763222110 0 1233345554 4689
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~ 155 (223)
||+|+-++|.+.+.+.-+..+.-+.++++++|...+. -++...|...++. .-+..++--|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS--~l~i~~ia~~~~~-p~r~ig~Hff 452 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTS--TISISLLAKALKR-PENFCGMHFF 452 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHhhcCC-cccEEEEecC
Confidence 9999999998888888888888899999999854443 4556667776643 3344555544
No 169
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.27 E-value=9.1e-06 Score=69.28 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=67.5
Q ss_pred CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhh--CCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~--g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
++|||||+|.||+.+++.+... ++++. ++++........... ++..+++++++-.+.|+|+.|+|... .-+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~-----~~e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA-----LKE 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH-----HHH
Confidence 4899999999999999999765 56643 444432222222222 45566788888456999999999322 123
Q ss_pred HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCcc
Q 027408 113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA 148 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~vd~---~al~~~L~~g~i~ 148 (223)
-....++.|..++..+-+.+.|. +.|.++.+++...
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 34445566777776666655554 3455665555443
No 170
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.26 E-value=2.9e-06 Score=73.75 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCCh-hHHHhh---CCee-cCCHHhhcccCCEEEEcCCCChhh
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDP-QLEKET---GAKF-EEDLDTMLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~-~~~~~~---g~~~-~~~l~e~l~~aDvVv~~~p~~~~t 106 (223)
...++++|||+|.+|+..++.+.. ++. +|.+|+|++... ..+.++ ++.. +.+.++++.++|+|+.++|..
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~--- 199 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR--- 199 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence 467899999999999999999864 665 599999986332 233333 2222 468899999999999999944
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
..++.. .+|||+.|..++.-..
T Consensus 200 ~Pl~~~----~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 200 TPVYPE----AARAGRLVVAVGAFTP 221 (304)
T ss_pred CceeCc----cCCCCCEEEecCCCCC
Confidence 355643 3699999999986443
No 171
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.26 E-value=8.3e-06 Score=78.76 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=85.7
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPK 92 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l~~ 92 (223)
++|+|||.|.||..||..+...|++|..+|+++...+... + ..+...++++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999999999999998763221100 0 1233345665 4689
Q ss_pred CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
||+|+-++|.+.+.+.-+..+.-+.++++++|...+ +-++...|.+.+.. .-+..++.-|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNT--SALPIKDIAAVSSR-PEKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-ccceEEEeccC
Confidence 999999999988888888888889999999885433 34566777777644 34456777553
No 172
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.26 E-value=3.6e-05 Score=67.00 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=74.5
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe--------------ecCCHHhhcccCCEEEEcCC
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~~~l~e~l~~aDvVv~~~p 101 (223)
.++|+|||.|.||..+|..|...|.+|.++.|+. .+.....|+. ...+. +....+|+|++|++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK 81 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK 81 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec
Confidence 3689999999999999999999999999999864 2222222221 11122 34567999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~ 151 (223)
... +... -+.....++++..++...-| +-.++.+.+.+...++.++.
T Consensus 82 ~~~-~~~~-~~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 82 TTA-NALL-APLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred CCC-hHhH-HHHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 443 2222 23445556778888877555 45667777787776766553
No 173
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.24 E-value=2.5e-06 Score=63.35 Aligned_cols=65 Identities=26% Similarity=0.420 Sum_probs=52.2
Q ss_pred EEEEEcccHHHHHHHHHHccC--CCeE-EEEcCCCCCh-hHHHhhCCeecCCHHhhcc--cCCEEEEcCCC
Q 027408 38 TVGTVGCGRIGKLLLQRLKPF--NCNL-LYHDRVKMDP-QLEKETGAKFEEDLDTMLP--KCDIVVVNTPL 102 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~--G~~V-~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~ 102 (223)
+|||||+|.+|+.....+... +.++ .++|+++... ...+.+++..+++++++++ +.|+|++++|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 799999999999999888765 5565 4788875333 3356678888899999997 78999999993
No 174
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.21 E-value=2.4e-06 Score=73.33 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhhCCe------ecCCHHhhcccCCEEEEcCC-CCh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAK------FEEDLDTMLPKCDIVVVNTP-LTE 104 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~------~~~~l~e~l~~aDvVv~~~p-~~~ 104 (223)
.+...+|.|||.|-+|..-|+.+..+|.+|.+.|.+..... ....++.+ ...++++.+.++|+||-++- ...
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 46777899999999999999999999999999998742221 22222322 12467888999999987642 123
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcC
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
....++.++.+++||||++|||++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 345678899999999999999996
No 175
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.21 E-value=1.1e-05 Score=68.74 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhh---CCeecCCHHhh-cccCCEEEEcCCCCh--h
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET---GAKFEEDLDTM-LPKCDIVVVNTPLTE--K 105 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~---g~~~~~~l~e~-l~~aDvVv~~~p~~~--~ 105 (223)
...+++++|+|.|.+|++++..+...|++|.+++|+.... +..+.. +.....++++. ..++|+|+.++|... .
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~ 193 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN 193 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence 3568999999999999999999999999999999975322 222222 21112234443 357999999999642 1
Q ss_pred hhh-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 027408 106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (223)
Q Consensus 106 t~~-~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i 147 (223)
... .+. .+.++++.+++|+.-.+... .|.+..++..+
T Consensus 194 ~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~ 231 (270)
T TIGR00507 194 IDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGT 231 (270)
T ss_pred CCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence 111 122 34567888888887655433 35555544433
No 176
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=98.19 E-value=2.2e-05 Score=64.96 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=69.9
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCCC----------CChhHHHhh-CCeecC-----CHHhhc-ccCC
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK----------MDPQLEKET-GAKFEE-----DLDTML-PKCD 94 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~-g~~~~~-----~l~e~l-~~aD 94 (223)
+|.|++|+|.|+|++|+.+|+.|...|.+++ +.|.+. ...+..+.. ++..+. +.++++ .+||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 6899999999999999999999999998754 566544 111111111 222111 223443 4799
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+++-|.+ .+.++.+....++ =.+|+-.+.+++- . .-.+.|.+..+.
T Consensus 100 VlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t-~-~a~~~L~~~Gi~ 145 (217)
T cd05211 100 IFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTT-D-EALRILHERGIV 145 (217)
T ss_pred EEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCC-H-HHHHHHHHCCcE
Confidence 9999998 4577888888776 3345555555554 4 445666666655
No 177
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.19 E-value=7.1e-06 Score=72.14 Aligned_cols=99 Identities=30% Similarity=0.438 Sum_probs=71.3
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHcc-CC-CeEEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhh
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP-FN-CNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t 106 (223)
+..+.+++|.|+|. |.||+.+++.|.. .| .+++.++|+.... +...+++.....++++.+.++|+|+.++...
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~--- 226 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP--- 226 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---
Confidence 34789999999998 8999999999964 56 4799999875322 2233333222346889999999998776522
Q ss_pred hh-cccHHHHhcCCCCcEEEEcCCCCccCH
Q 027408 107 RG-MFDKDRIAKMKKGVLIVNNARGAIMDT 135 (223)
Q Consensus 107 ~~-~i~~~~~~~mk~ga~ivn~srg~~vd~ 135 (223)
.. .++.+.+ +++.++||+++..=||.
T Consensus 227 ~~~~I~~~~l---~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 227 KGVEIDPETL---KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred cCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence 23 3666544 78999999999876653
No 178
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.19 E-value=1.5e-05 Score=64.51 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=65.1
Q ss_pred ccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---hCCeec--CC----HHhhcccCCEEEEcC
Q 027408 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---TGAKFE--ED----LDTMLPKCDIVVVNT 100 (223)
Q Consensus 31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---~g~~~~--~~----l~e~l~~aDvVv~~~ 100 (223)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+|.+.-.. +.. ..-... .+ +.+.+++||+|+.++
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 458999999999975 679999999999999999997543100 000 000000 12 778999999999999
Q ss_pred CCChhhhhc-ccHHHHhcCCCCcEEEEcCCC
Q 027408 101 PLTEKTRGM-FDKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 101 p~~~~t~~~-i~~~~~~~mk~ga~ivn~srg 130 (223)
+ ..++ +..+. +|+|+++||++--
T Consensus 135 G----~~~~~i~~d~---ik~GavVIDVGi~ 158 (197)
T cd01079 135 P----SPNYKVPTEL---LKDGAICINFASI 158 (197)
T ss_pred C----CCCCccCHHH---cCCCcEEEEcCCC
Confidence 8 2344 55554 5799999999843
No 179
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=98.19 E-value=3e-06 Score=61.89 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
.|+|++|.|||.|.+|..-++.|...|++|+++++.. ........+. ...+++.+..+|+|+.+++. ..+++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~~~~~i~~~-~~~~~~~l~~~~lV~~at~d-----~~~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EFSEGLIQLI-RREFEEDLDGADLVFAATDD-----PELNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HHHHTSCEEE-ESS-GGGCTTESEEEE-SS------HHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hhhhhHHHHH-hhhHHHHHhhheEEEecCCC-----HHHHH
Confidence 6899999999999999999999999999999999864 1111111122 23456778899999988872 22445
Q ss_pred HHHhcCCCCcEEEEcC
Q 027408 113 DRIAKMKKGVLIVNNA 128 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~s 128 (223)
+.....+.-.+++|++
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 5555556556777774
No 180
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.18 E-value=1.1e-05 Score=69.21 Aligned_cols=82 Identities=23% Similarity=0.363 Sum_probs=67.8
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||- ..+|+.+|..|...|+.|+.++... .++.+.+++||+|+.++. ..+
T Consensus 152 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG----~p~ 213 (284)
T PRK14190 152 YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVG----KPK 213 (284)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC----CCC
Confidence 356899999999996 6789999999999999999886421 368889999999999997 344
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCc
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
++..+.+ |+|+++||++...+
T Consensus 214 ~i~~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 214 LITADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred cCCHHHc---CCCCEEEEeecccc
Confidence 6777765 89999999997663
No 181
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=98.17 E-value=2e-05 Score=65.67 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=72.1
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhH----HHhhC-------CeecCCHHhhc-c
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQL----EKETG-------AKFEEDLDTML-P 91 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~----~~~~g-------~~~~~~l~e~l-~ 91 (223)
.++.|++|+|.|+|++|+.+|+.|..+|++|+ +.|.+ ....+. ..+.+ .... +.++++ .
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~ 105 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLEL 105 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceee
Confidence 36899999999999999999999999999988 44432 111111 11122 1112 334444 4
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+||+++-|.+ .+.++.+....++ +.+|--+....+. ....+.|.+..+.
T Consensus 106 ~~Dvlip~a~-----~~~i~~~~~~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~ 154 (227)
T cd01076 106 DCDILIPAAL-----ENQITADNADRIK--AKIIVEAANGPTT-PEADEILHERGVL 154 (227)
T ss_pred cccEEEecCc-----cCccCHHHHhhce--eeEEEeCCCCCCC-HHHHHHHHHCCCE
Confidence 7999999987 5567788888886 4444444444445 5566888888777
No 182
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.15 E-value=1.2e-05 Score=70.49 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=66.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHc-cCCC-eEEEEcCCCCCh-hHHHhh----CC--eecCCHHhhcccCCEEEEcCCCChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDP-QLEKET----GA--KFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~-~~~~~~----g~--~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
..++++|||.|.+|+..++.+. ..+. +|.+|+|++... +.++++ ++ ...+++++.+++||+|+.++|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 5679999999999999999996 4675 599999986333 233322 44 33578999999999999999853
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
..++..+. +|+|+.+..++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 34565554 689998887763
No 183
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.14 E-value=9e-06 Score=71.28 Aligned_cols=89 Identities=21% Similarity=0.219 Sum_probs=66.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHc-cCCC-eEEEEcCCCCChh-HHH----hhCC--eecCCHHhhcccCCEEEEcCCCChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQ-LEK----ETGA--KFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~-~~~----~~g~--~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
..++++|||+|.+|+..+..+. ..+. +|.+|+|++...+ ..+ .+++ ..+.+++++++++|+|+.|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 5789999999999999988764 4565 5899999863332 222 2243 34678899999999999999944
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~srg 130 (223)
+.++. +.+|+|+.|+.++..
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34443 567999999988753
No 184
>PRK06046 alanine dehydrogenase; Validated
Probab=98.14 E-value=1.2e-05 Score=70.53 Aligned_cols=88 Identities=26% Similarity=0.465 Sum_probs=64.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHcc-CCCe-EEEEcCCCCChh-HHHh----hC--CeecCCHHhhcccCCEEEEcCCCChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQ-LEKE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~-~G~~-V~~~d~~~~~~~-~~~~----~g--~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
.-+++||||+|.+|+..++.+.. .+.+ |.+|||++...+ ..++ .+ +..+++.+++++ +|+|++|+|..
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~-- 204 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR-- 204 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC--
Confidence 45789999999999999998864 4554 889999863332 2222 24 344678999997 99999999953
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
..++..+. +|+|+.|..++.
T Consensus 205 -~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 -KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred -CcEecHHH---cCCCCEEEecCC
Confidence 35666554 589999988874
No 185
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=1.4e-05 Score=68.37 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=66.0
Q ss_pred cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+.+++||+|+.++. ..+
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvG----kp~ 212 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVG----KPN 212 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecC----ccc
Confidence 3568999999999998 899999999998999998876421 357888999999999997 334
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++..+. +|+|+++||++-..
T Consensus 213 ~i~~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 213 LITEDM---VKEGAIVIDIGINR 232 (281)
T ss_pred ccCHHH---cCCCcEEEEeeccc
Confidence 566555 57999999998544
No 186
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.09 E-value=2e-05 Score=66.85 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=61.1
Q ss_pred CEEEEEcc-cHHHHHHHHHHcc-CCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
.+|+|+|+ |.||+.+++.+.. -++++. ++|+...........++..+.+++++++.+|+|+.++| |... .+-
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~--p~~~---~~~ 76 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT--PEAT---LEN 76 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC--HHHH---HHH
Confidence 58999998 9999999999875 478855 57876532222234455566799999989999998887 3332 233
Q ss_pred HHhcCCCCcEEEEcCCCCcc
Q 027408 114 RIAKMKKGVLIVNNARGAIM 133 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~v 133 (223)
....++.|..+|-...|--.
T Consensus 77 ~~~al~~G~~vvigttG~s~ 96 (257)
T PRK00048 77 LEFALEHGKPLVIGTTGFTE 96 (257)
T ss_pred HHHHHHcCCCEEEECCCCCH
Confidence 34445556666644444333
No 187
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=3.1e-05 Score=66.32 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=66.2
Q ss_pred cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++.+.+++||+|+.+++ ..+
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~~~ 212 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATG----LAK 212 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcC
Confidence 3568999999999974 679999999999999999887532 368888999999999998 234
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++..+. +|+|+++||++...
T Consensus 213 ~i~~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 213 FVKKDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred ccCHHH---cCCCCEEEEccCcc
Confidence 566555 57999999998665
No 188
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.07 E-value=1.7e-05 Score=68.21 Aligned_cols=70 Identities=26% Similarity=0.271 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhhC-----C--eecCCHHhhcccCCEEEEcCCC
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETG-----A--KFEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g-----~--~~~~~l~e~l~~aDvVv~~~p~ 102 (223)
.+.++++.|+|.|.+|++++..|...|+ +|.++||+... ...++.++ . ....++.+.++++|+||.++|.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 5788999999999999999999999998 69999998532 22333221 1 1223455677889999999984
No 189
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=3.9e-05 Score=65.63 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=65.9
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+.... .++.+..++||+|+.+++ ..++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvG----kp~~ 214 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIG----RPKF 214 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence 46899999999997 5689999999999999999887532 368888999999999998 3345
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+..+. +|+|+++||++-..
T Consensus 215 i~~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 215 IDEEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 66665 68999999997544
No 190
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=4.4e-05 Score=65.87 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=66.2
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+.... .++++.+++||+|+.+++ ..++
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvG----kp~~ 214 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAG----RPNL 214 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence 56899999999997 5679999999999999999886532 268888999999999998 2345
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCc
Q 027408 110 FDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
+..+. +|+|+++||++-..+
T Consensus 215 i~~~~---ik~gavVIDvGin~~ 234 (297)
T PRK14186 215 IGAEM---VKPGAVVVDVGIHRL 234 (297)
T ss_pred cCHHH---cCCCCEEEEeccccc
Confidence 66554 579999999986664
No 191
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.03 E-value=2.2e-05 Score=68.56 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=62.2
Q ss_pred CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~ 114 (223)
.+|||+|+|+||+.+++.+... ++++. ++++++. .......++....+.++++.+.|+|++|+|.... -+..
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~ 77 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQ 77 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHH
Confidence 5899999999999999999765 78866 5788641 1222334444445777888899999999994322 2555
Q ss_pred HhcCCCCcEEEEcCC
Q 027408 115 IAKMKKGVLIVNNAR 129 (223)
Q Consensus 115 ~~~mk~ga~ivn~sr 129 (223)
...++.|.-+|+..-
T Consensus 78 ~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 78 APYFAQFANTVDSFD 92 (324)
T ss_pred HHHHHcCCCEEECCC
Confidence 566777878888753
No 192
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=2.7e-05 Score=66.81 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=67.2
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||- ..+|+.+|..|...|+.|+.+.... .++++.+++||+|+.++. ..+
T Consensus 149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvG----kp~ 210 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVG----RPH 210 (287)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcC
Confidence 356899999999997 5789999999999999999887532 267888999999999997 235
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCc
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
++..+. +|+|+++||++...+
T Consensus 211 ~i~~~~---vk~GavVIDVGin~~ 231 (287)
T PRK14173 211 LITPEM---VRPGAVVVDVGINRV 231 (287)
T ss_pred ccCHHH---cCCCCEEEEccCccc
Confidence 666655 589999999997664
No 193
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.01 E-value=2.4e-05 Score=68.03 Aligned_cols=115 Identities=22% Similarity=0.253 Sum_probs=72.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHh---------h--CCeecCCHHhhcccCCEEEEcCCCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE---------T--GAKFEEDLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~---------~--g~~~~~~l~e~l~~aDvVv~~~p~~ 103 (223)
++|+|||.|.||..+|..+...|. +|..+|....... .+.+ . .+....++++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988765 8999998653221 1100 0 1223357776 78999999998731
Q ss_pred hh-----------hhhcccHH---HHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCccEEE--ee
Q 027408 104 EK-----------TRGMFDKD---RIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS--GD 153 (223)
Q Consensus 104 ~~-----------t~~~i~~~---~~~~mk~ga~ivn~srg~~vd~~al~~~--L~~g~i~~a~--lD 153 (223)
.. +..++ ++ .+....+++++|+++..-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv-~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIV-REVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 11 11111 22 2223347889999987554445555555 5555666665 56
No 194
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=98.00 E-value=4.1e-05 Score=67.25 Aligned_cols=93 Identities=6% Similarity=0.106 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
.+.+++|.|||.|.||+.+|+.|...|. +|++.+|+....+.. .. .. ..-++..++|+|+.|+..|......+.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~-~~---~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~ 245 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYR-TV---VR-EELSFQDPYDVIFFGSSESAYAFPHLS 245 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchh-hh---hh-hhhhcccCCCEEEEcCCcCCCCCceee
Confidence 5899999999999999999999999996 599999986321111 00 00 111445789999987543334445666
Q ss_pred HHHHhcCCCCcEEEEcCCCC
Q 027408 112 KDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg~ 131 (223)
.+.++..++ .+++|.+-..
T Consensus 246 ~~~~~~~~~-r~~iDLAvPR 264 (338)
T PRK00676 246 WESLADIPD-RIVFDFNVPR 264 (338)
T ss_pred HHHHhhccC-cEEEEecCCC
Confidence 666655432 3788887554
No 195
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=5.3e-05 Score=65.06 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=65.3
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+.... .++.+.+++||+|+.++. -.++
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvG----kp~~ 215 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIG----SPLK 215 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CCCc
Confidence 45799999999997 5679999999999999999887432 368889999999999998 2346
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+..+. +|+|+++||++-..
T Consensus 216 i~~~~---vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LTAEY---FNPESIVIDVGINR 234 (288)
T ss_pred cCHHH---cCCCCEEEEeeccc
Confidence 66655 57999999998544
No 196
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.00 E-value=2.5e-05 Score=68.21 Aligned_cols=90 Identities=19% Similarity=0.315 Sum_probs=66.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChhH-HH---hhCC--eecCCHHhhcccCCEEEEcCCCChhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQL-EK---ETGA--KFEEDLDTMLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~-~~---~~g~--~~~~~l~e~l~~aDvVv~~~p~~~~t 106 (223)
.-++++|||.|..|+..++.+.. +.. +|.+|+|++...+. .+ ..++ ..+++.++++++||+|+.+++.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~--- 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR--- 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence 46799999999999999988854 344 69999998744332 21 1233 34678999999999999998733
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg 130 (223)
..++..+ .+|+|+.|+.++..
T Consensus 204 ~P~~~~~---~l~~G~hi~~iGs~ 224 (315)
T PRK06823 204 EPLLQAE---DIQPGTHITAVGAD 224 (315)
T ss_pred CceeCHH---HcCCCcEEEecCCC
Confidence 4666655 46899999999853
No 197
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.99 E-value=4.6e-05 Score=66.68 Aligned_cols=117 Identities=19% Similarity=0.265 Sum_probs=70.3
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhH-HH--h-----hC----CeecCCHHhhcccCCEEEEcC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EK--E-----TG----AKFEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~-~~--~-----~g----~~~~~~l~e~l~~aDvVv~~~ 100 (223)
+..++|+|||.|.+|..+|..+...| .++..+|++....+. +. . .+ +....+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999988777 689999987532211 11 0 11 12224666 679999999998
Q ss_pred --CCChh-hhh-------cccH---HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH--hCCccEEE
Q 027408 101 --PLTEK-TRG-------MFDK---DRIAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS 151 (223)
Q Consensus 101 --p~~~~-t~~-------~i~~---~~~~~mk~ga~ivn~srg~~vd~~al~~~L~--~g~i~~a~ 151 (223)
|..+. ++. -+-. +.+....|.+++++++...=+-...+.+.-. ..++.|.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 43331 000 0112 2233345788888887654333444444321 34566555
No 198
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=3.7e-05 Score=65.86 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=66.3
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||- ..+|+.+|..|...|+.|+.++... .++.+.+++||+|+.++. ..+
T Consensus 153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvG----k~~ 214 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVG----KPE 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCC----CcC
Confidence 356899999999997 5789999999999999999988532 367888999999999998 344
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++..+. +|+|+++||++-..
T Consensus 215 ~i~~~~---ik~gavVIDvGin~ 234 (284)
T PRK14177 215 FIKADW---ISEGAVLLDAGYNP 234 (284)
T ss_pred ccCHHH---cCCCCEEEEecCcc
Confidence 566554 57999999998644
No 199
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.98 E-value=2.2e-05 Score=68.91 Aligned_cols=88 Identities=16% Similarity=0.307 Sum_probs=62.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChh-HHHh----hCCe--ecCCHHhhcccCCEEEEcCCCChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQ-LEKE----TGAK--FEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~-~~~~----~g~~--~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
..++++|||.|.+|+..+..+.. .+. +|.+|+|++...+ ..++ +++. .+.++++++.++|+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 46799999999999999888874 554 6999999863332 2222 2443 3578899999999999999843
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
..++..+. +++|+.+..++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 34555543 57787776643
No 200
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=3.6e-05 Score=65.90 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=66.1
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||- ..+|+.+|..|...|+.|+.+.... .++.+.+++||+|+.+++ ..+
T Consensus 150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~p~ 211 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVG----VPH 211 (282)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccC----CcC
Confidence 356899999999997 5679999999999999999886432 268888999999999998 344
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++..+. +|+|+++||++--.
T Consensus 212 ~i~~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 212 FIGADA---VKPGAVVIDVGISR 231 (282)
T ss_pred ccCHHH---cCCCcEEEEeeccc
Confidence 566654 68999999998655
No 201
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.98 E-value=4.4e-05 Score=62.29 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=46.5
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~ 115 (223)
++|+|||. |.||+.++..++..|+.|. +++||+|++|+|-.. + .+.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~-~-----~~~i 48 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA-A-----LNYI 48 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH-H-----HHHH
Confidence 48999998 9999999999999999885 368999999999221 1 3334
Q ss_pred hcCCCCcEEEEcCCCC
Q 027408 116 AKMKKGVLIVNNARGA 131 (223)
Q Consensus 116 ~~mk~ga~ivn~srg~ 131 (223)
+.+. .+++|++.-+
T Consensus 49 ~~~~--~~v~Dv~SvK 62 (197)
T PRK06444 49 ESYD--NNFVEISSVK 62 (197)
T ss_pred HHhC--CeEEeccccC
Confidence 4443 3788988644
No 202
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.98 E-value=3e-05 Score=67.27 Aligned_cols=91 Identities=11% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChh-HHHh----hC--CeecCCHHhhcccCCEEEEcCCCChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQ-LEKE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~-~~~~----~g--~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
.-+++||||.|..|+..++.+.. +.. +|.+|+|++...+ .+++ .+ +..+++.++++.+||+|+.++|.+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~-- 193 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD-- 193 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence 46899999999999999988864 455 5999999864332 2222 24 345679999999999999999843
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
..++..+ .+|||+.|.-++...
T Consensus 194 -~P~~~~~---~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 194 -TPIFNRK---YLGDEYHVNLAGSNY 215 (301)
T ss_pred -CcEecHH---HcCCCceEEecCCCC
Confidence 4666655 457898887776533
No 203
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.97 E-value=6.9e-05 Score=69.04 Aligned_cols=72 Identities=25% Similarity=0.364 Sum_probs=52.4
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeecCCHHhh--cccCCEEEEcCCCC
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTM--LPKCDIVVVNTPLT 103 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~--l~~aDvVv~~~p~~ 103 (223)
+..+.+++++|+|.|.+|++++..+...|++|.+++|+.... +..+..+.... +++++ +.++|+|+.|+|..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCC
Confidence 456789999999999999999999999999999999875322 22233322211 22322 56899999999954
No 204
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.97 E-value=3.1e-05 Score=69.09 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=63.8
Q ss_pred CEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhh----------CCeecCCHHhhcccCCEEEEcCCCChh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKET----------GAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~----------g~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
++|.|||+|.||+.+|..|.+.| .+|++.||+.......... .+...+.+.+++++.|+|+.++|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~-- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF-- 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence 68999999999999999999888 8999999985333322222 1222356778899999999999832
Q ss_pred hhhcccHHHH-hcCCCCcEEEEcCCCCc
Q 027408 106 TRGMFDKDRI-AKMKKGVLIVNNARGAI 132 (223)
Q Consensus 106 t~~~i~~~~~-~~mk~ga~ivn~srg~~ 132 (223)
++...+ +.++.|...++++-.+-
T Consensus 80 ----~~~~i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 80 ----VDLTILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred ----hhHHHHHHHHHhCCCEEEcccCCc
Confidence 222333 44566777777775543
No 205
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.97 E-value=1.2e-05 Score=70.22 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=56.3
Q ss_pred CCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChh-HHHh---hC--CeecCCHHhhcccCCEEEEcCCCChhhh
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQ-LEKE---TG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~-~~~~---~g--~~~~~~l~e~l~~aDvVv~~~p~~~~t~ 107 (223)
-++++|||.|..|+..++.+.. ++. +|.+|+|++...+ +++. ++ +..+++.++++++||+|+.++|.+..+
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 4689999999999999998854 565 5999999863222 2221 23 345689999999999999999855422
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCc
Q 027408 108 GMFDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
.++..+ .+++|+.|+.++....
T Consensus 207 P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 207 PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp ESB-GG---GS-TT-EEEE-S-SST
T ss_pred ccccHH---HcCCCcEEEEecCCCC
Confidence 455543 6789999999987544
No 206
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=4.1e-05 Score=65.57 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=66.3
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||- ..+|+.+|..|...++.|+.+.... .++++..++||+|+.++. -.+
T Consensus 151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvG----kp~ 212 (282)
T PRK14166 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAG----CVN 212 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcC
Confidence 356899999999997 4679999999998999999887532 368889999999999998 344
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++..+. +|+|+++||++-..
T Consensus 213 ~i~~~~---vk~GavVIDvGin~ 232 (282)
T PRK14166 213 LLRSDM---VKEGVIVVDVGINR 232 (282)
T ss_pred ccCHHH---cCCCCEEEEecccc
Confidence 566654 57999999998544
No 207
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.96 E-value=3.6e-05 Score=62.94 Aligned_cols=96 Identities=25% Similarity=0.302 Sum_probs=69.3
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC---CCCh--------h--------HHH---hhC----Cee--
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV---KMDP--------Q--------LEK---ETG----AKF-- 82 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~---~~~~--------~--------~~~---~~g----~~~-- 82 (223)
..|..++|+|+|+|.+|..+|+.|...|. +++++|+. .... + ..+ +.+ +..
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 36899999999999999999999999998 59999987 1100 0 000 111 111
Q ss_pred ----cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 83 ----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 83 ----~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
.++++++++++|+|+.| ..++.++..+..+....++...++...+
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g 145 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG 145 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 12455678899999988 6788899888888888888766666433
No 208
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=5.1e-05 Score=65.00 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=65.6
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||- ..+|+.+|..|...|+.|+.+.... .++.+..++||+|+.+++ ..+
T Consensus 152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvG----kp~ 213 (282)
T PRK14180 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVG----KPN 213 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccC----CcC
Confidence 356899999999997 5689999999999999999887532 367788999999999998 234
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++..+. +|+|+++||++-..
T Consensus 214 ~i~~~~---vk~gavVIDvGin~ 233 (282)
T PRK14180 214 FITADM---VKEGAVVIDVGINH 233 (282)
T ss_pred cCCHHH---cCCCcEEEEecccc
Confidence 566554 57999999998543
No 209
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.94 E-value=9.8e-05 Score=67.08 Aligned_cols=111 Identities=17% Similarity=0.299 Sum_probs=73.2
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC--------CChh-HH-----------------HhhCCeecC
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQ-LE-----------------KETGAKFEE 84 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~--------~~~~-~~-----------------~~~g~~~~~ 84 (223)
+.+|.|++|.|.|+|++|...|+.|..+|++|++++.+. ...+ .. ...+....
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i- 301 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV- 301 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-
Confidence 457999999999999999999999999999988744311 1110 00 01123333
Q ss_pred CHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCCC-CcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 85 ~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~-ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+.++++ ..||+++-|.- .+.|+.+....++. +..+|--+.......++.. .|.+..|.
T Consensus 302 ~~d~~~~~~cDIliPaAl-----~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~-~L~~rgI~ 361 (444)
T PRK14031 302 EGARPWGEKGDIALPSAT-----QNELNGDDARQLVANGVIAVSEGANMPSTPEAIK-VFQDAKIL 361 (444)
T ss_pred CCcccccCCCcEEeeccc-----ccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH-HHHHCCcE
Confidence 344554 46999988764 67788888888864 5555555555567766654 44444444
No 210
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.93 E-value=0.00033 Score=59.25 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=73.4
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEc-------CCCCChh-H------HHhh------------CCeec
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHD-------RVKMDPQ-L------EKET------------GAKFE 83 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d-------~~~~~~~-~------~~~~------------g~~~~ 83 (223)
+.++.|+||.|.|+|++|+.+|+.|...|++|+ +.| +.....+ + .... +.+..
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 357899999999999999999999999999988 444 2211111 1 0011 12333
Q ss_pred CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK--KGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 84 ~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk--~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+.++++ .+||+++-|.- .+.|+.+..+.++ +=.+|+-.+.+++ .. +-.+.|.+..|.
T Consensus 113 -~~~~~~~~~~DIliPcAl-----~~~I~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~ 172 (254)
T cd05313 113 -EGKKPWEVPCDIAFPCAT-----QNEVDAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVL 172 (254)
T ss_pred -CCcchhcCCCcEEEeccc-----cccCCHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence 444554 46999988864 6788888888874 2345566666665 44 455777777776
No 211
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=5.8e-05 Score=65.03 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=66.0
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+.... .++.+.+++||+|+.++. ..++
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvG----kp~~ 216 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVG----IPNF 216 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence 56899999999997 5679999999999999999887532 367888999999999998 3345
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+..+. +|+|+++||++-..
T Consensus 217 i~~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VKYSW---IKKGAIVIDVGINS 235 (294)
T ss_pred cCHHH---cCCCCEEEEecccc
Confidence 66655 57999999998654
No 212
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.92 E-value=5.9e-05 Score=65.12 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=66.2
Q ss_pred cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++++.+++||+|+.++.- .+
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~~~ADIvv~AvGk----~~ 222 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIVREADIVIAAAGQ----AM 222 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cC
Confidence 3568999999999974 679999999999999999987532 3688899999999999972 35
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++..+. +|+|+++||++--.
T Consensus 223 ~i~~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 223 MIKGDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred ccCHHH---cCCCCEEEEeeccc
Confidence 666555 57999999998655
No 213
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.92 E-value=2.3e-05 Score=60.55 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=70.3
Q ss_pred EEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--------------CCHHhhcccCCEEEEcCCCCh
Q 027408 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------EDLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--------------~~l~e~l~~aDvVv~~~p~~~ 104 (223)
|+|+|.|.||..+|..|+..|.+|.++.+.. ..+..++.|+... ....+....+|+|++|+...+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 7899999999999999988999999999865 3333333343211 111234567999999998433
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~ 151 (223)
. ...+ +.....+.+++.++..-.| +-.++.+.+.+...++.++.
T Consensus 80 ~-~~~l-~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 80 L-EQAL-QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp H-HHHH-HHHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred h-HHHH-HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 2 2332 3355555667677766554 55566676676555665443
No 214
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.91 E-value=4e-05 Score=68.59 Aligned_cols=94 Identities=17% Similarity=0.254 Sum_probs=68.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHcc-CC-C-eEEEEcCCCCChh-HHH----hh-C---CeecCCHHhhcccCCEEEEcCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKP-FN-C-NLLYHDRVKMDPQ-LEK----ET-G---AKFEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~-~G-~-~V~~~d~~~~~~~-~~~----~~-g---~~~~~~l~e~l~~aDvVv~~~p~ 102 (223)
.-++++|||.|..++..++.+.. +. . +|.+|+|++...+ ..+ .+ + +..+++.++++++||+|+.|++.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 45789999999999999998865 43 4 6999999864332 222 22 2 44568999999999999999975
Q ss_pred Ch---hhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 103 TE---KTRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 103 ~~---~t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++ .+..++..+ .+|+|+.|+.++.-+
T Consensus 234 ~~~~~s~~Pv~~~~---~lkpG~hv~~ig~~e 262 (379)
T PRK06199 234 ETGDPSTYPYVKRE---WVKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCCcCcEecHH---HcCCCcEEecCCccc
Confidence 43 334666655 457999888776543
No 215
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=7.4e-05 Score=64.15 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=66.0
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHcc----CCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCCh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~ 104 (223)
.+.++.||++.|||- ..+|+.+|..|.. .++.|..+.... .++.+.+++||+|+.+++
T Consensus 151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG--- 213 (286)
T PRK14184 151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIG--- 213 (286)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC---
Confidence 356899999999997 5679999999987 788988887532 368899999999999996
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
..+++..+.+ |+|+++||++--.
T Consensus 214 -~p~li~~~~v---k~GavVIDVGi~~ 236 (286)
T PRK14184 214 -RPRFVTADMV---KPGAVVVDVGINR 236 (286)
T ss_pred -CCCcCCHHHc---CCCCEEEEeeeec
Confidence 3456777665 8999999998543
No 216
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.90 E-value=0.00052 Score=62.43 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=94.2
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEE--------EcCCCCChhHH---H---------------hh-CCeec
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY--------HDRVKMDPQLE---K---------------ET-GAKFE 83 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~--------~d~~~~~~~~~---~---------------~~-g~~~~ 83 (223)
+.+|.|+||+|-|+|++|+..|+.|...|++|++ ||++....+.. . .+ +.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 4579999999999999999999999999999998 78664333220 0 11 33333
Q ss_pred CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCC-CCc-EEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 84 ~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
+.++++ .+||+++-|.- .+.|+.+....+. .++ +|+-.+.+ .++.+|- +.|.+..|. .+=|..-+---
T Consensus 303 -~~~~~~~~~cDVliPcAl-----~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGG 373 (445)
T PRK14030 303 -AGKKPWEQKVDIALPCAT-----QNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGG 373 (445)
T ss_pred -CCccceeccccEEeeccc-----cccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCC
Confidence 344554 46999888764 6778888777773 234 45555556 6666544 667777666 33333222100
Q ss_pred C--CCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 027408 161 P--KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 201 (223)
Q Consensus 161 ~--~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~ 201 (223)
- .-.++. .| .-|.-|...+..+++...+.+...+.+
T Consensus 374 Vivs~~E~~--qn---~~~~~w~~eeV~~~L~~~m~~~~~~v~ 411 (445)
T PRK14030 374 VATSGLEMS--QN---AMHLSWSAEEVDEKLHQIMSGIHEQCV 411 (445)
T ss_pred eeeehhhhh--cc---ccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 0 000111 11 245556666666666665555444443
No 217
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=6.2e-05 Score=64.55 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=66.2
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHcc--CCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t 106 (223)
.+.++.||++.|||- +.+|+.+|..|.. .++.|.++.... .++.+.+++||+|+.++. .
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~k~ADIvV~AvG----k 213 (284)
T PRK14193 152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHTRRADIIVAAAG----V 213 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHHHhCCEEEEecC----C
Confidence 356899999999996 5789999999987 789999887532 368889999999999998 2
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
.+++..+. +|+|+++||++...+
T Consensus 214 p~~i~~~~---ik~GavVIDvGin~~ 236 (284)
T PRK14193 214 AHLVTADM---VKPGAAVLDVGVSRA 236 (284)
T ss_pred cCccCHHH---cCCCCEEEEcccccc
Confidence 34566555 579999999997653
No 218
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.90 E-value=5.7e-06 Score=68.17 Aligned_cols=124 Identities=16% Similarity=0.155 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------h------------------CCeec
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------T------------------GAKFE 83 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~------------------g~~~~ 83 (223)
...-+.|+|||.|.||+.+|+.....|+.|..+|++......+.+ . .+...
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 345578999999999999999999999999999998643221110 0 01223
Q ss_pred CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408 84 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 84 ~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~ 160 (223)
++..++++++|+|+-+.-.+.+.+.-+.++.-+..|+.+++. |+| -+...++..+++... ++++|-.|.+-|.
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS---Sl~lt~ia~~~~~~s-rf~GlHFfNPvPv 161 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS---SLSLTDIASATQRPS-RFAGLHFFNPVPV 161 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc---ceeHHHHHhhccChh-hhceeeccCCchh
Confidence 567778888998888876555544444455555567777763 444 345666777766544 4478887776553
No 219
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=7.2e-05 Score=64.06 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=65.7
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.++.||++.|||- ..+|+.+|..|...++.|+.+.... .++++.+++||+|+.+++ ..++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvG----k~~~ 213 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIG----KAEL 213 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcCc
Confidence 56899999999997 5679999999998899999887532 367888999999999998 2446
Q ss_pred ccHHHHhcCCCCcEEEEcCCCC
Q 027408 110 FDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+..+. +|+|+++||++-..
T Consensus 214 i~~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VKGAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred cCHHH---cCCCCEEEEeecee
Confidence 66655 57999999998655
No 220
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.89 E-value=6.3e-05 Score=66.25 Aligned_cols=81 Identities=12% Similarity=0.216 Sum_probs=66.5
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||- ..+|+.+|..|...++.|..+.... .++++.+++||+||.++. ..+
T Consensus 225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvG----kp~ 286 (364)
T PLN02616 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVG----QPN 286 (364)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcC
Confidence 356899999999996 5679999999999999999887532 368888999999999997 344
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++..+. +|+|+++||++-..
T Consensus 287 ~i~~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 287 MVRGSW---IKPGAVVIDVGINP 306 (364)
T ss_pred cCCHHH---cCCCCEEEeccccc
Confidence 566655 57999999998655
No 221
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.88 E-value=5e-05 Score=62.33 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhh
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~ 107 (223)
.+|+|++|.|||.|.+|..-++.|...|++|+++++..... +......+... .--.+.+..+|+|+.++.. ++
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d-~~-- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDD-EE-- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCC-HH--
Confidence 46899999999999999999999999999999999865321 11222233221 1113457789998877663 22
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q 027408 108 GMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~s 128 (223)
++.......++-.++||+.
T Consensus 82 --ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNVV 100 (205)
T ss_pred --HHHHHHHHHHHcCCEEEEC
Confidence 3445555555556777763
No 222
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=0.00011 Score=65.18 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=88.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------------h--C-CeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------------T--G-AKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------------~--g-~~~~~~l~e~l~~aDvV 96 (223)
|+|.|+|.|-+|-..+..+..+|++|+.+|..+...+.... . | +...++.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 68999999999999999999999999999987532221111 1 1 34557888899999999
Q ss_pred EEcCCCChhhhhccc--------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeC-CCCCCCCCCCC
Q 027408 97 VVNTPLTEKTRGMFD--------KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAPKDHP 165 (223)
Q Consensus 97 v~~~p~~~~t~~~i~--------~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv-~~~ep~~~~~~ 165 (223)
++|+|..+...+.+| ++..+.++..+++|+-|.-.+=..+.+.+.+.+..-.. -.+| +.+|-+...+.
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~A 157 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSA 157 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcch
Confidence 999985443334333 45667777779999999888877777777665544322 2232 44454444333
No 223
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=8.2e-05 Score=63.88 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=65.2
Q ss_pred ccCCCCCEEEEEccc-HHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
+.++.||++.|||-+ .+|+.+|..|... ++.|+.+.... .++++.+++||+|+.+++
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG---- 209 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIG---- 209 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----
Confidence 568999999999974 6799999999877 78888876532 368888999999999997
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
..+++..+. +|+|+++||++-..+
T Consensus 210 ~p~~i~~~~---ik~GavVIDvGin~~ 233 (287)
T PRK14181 210 VPLFIKEEM---IAEKAVIVDVGTSRV 233 (287)
T ss_pred CcCccCHHH---cCCCCEEEEeccccc
Confidence 234566655 579999999986553
No 224
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.87 E-value=4.9e-05 Score=57.37 Aligned_cols=103 Identities=20% Similarity=0.258 Sum_probs=62.5
Q ss_pred CEEEEEcc-cHHHHHHHHHHcc-CCCe-EEEEcCCCCCh---hHH-----HhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKP-FNCN-LLYHDRVKMDP---QLE-----KETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~-~G~~-V~~~d~~~~~~---~~~-----~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
.+|+|+|+ |+||+.+++.+.. -+++ +.+++++.... +.. ...++...+++++++.++|+|+-.. +|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence 37999999 9999999999987 6888 45777765111 111 1345666789999999999998777 243
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
...-.-+.. ++.+..+|-.+.|---++.+.++.+.+
T Consensus 79 ~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 79 AVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred HhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 322211222 344677777777774444444444443
No 225
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.86 E-value=7.4e-05 Score=55.89 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=54.4
Q ss_pred EEEEEc-ccHHHHHHHHHHccC-CCeEEEE-cCCC-CChhHHHhhC-Ce--ecCCH--Hhh-cccCCEEEEcCCCChhhh
Q 027408 38 TVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVK-MDPQLEKETG-AK--FEEDL--DTM-LPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 38 ~igIiG-~G~iG~~iA~~l~~~-G~~V~~~-d~~~-~~~~~~~~~g-~~--~~~~l--~e~-l~~aDvVv~~~p~~~~t~ 107 (223)
+++|+| .|.+|+.+++.+... ++++.++ +++. .........+ +. ..... +++ ..++|+|++|+|......
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 589999 599999999999874 7776655 5432 1111121211 11 01111 122 148999999999553332
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q 027408 108 GMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~sr 129 (223)
.+ ......+++|.++|+++.
T Consensus 81 ~~--~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 81 IA--PLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HH--HHHHhhhcCCCEEEECCc
Confidence 22 234556789999999974
No 226
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=6.6e-05 Score=64.78 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=64.9
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHcc----CCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
+.++.||++.|||- ..+|+.+|..|.. .+..|..+..+. .++++.+++||+|+.+++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~--- 216 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGK--- 216 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCc---
Confidence 56899999999997 5679999999876 578888777532 2578889999999999972
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
.+++..+.+ |+|+++||++-..
T Consensus 217 -~~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 217 -ARFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred -cCccCHHHc---CCCCEEEEeeccc
Confidence 256777776 8999999998554
No 227
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.86 E-value=7.5e-05 Score=65.47 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=65.9
Q ss_pred cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408 30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++++.+++||+||.++. ..+
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvG----kp~ 269 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAG----IPN 269 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccC----CcC
Confidence 3568999999999974 679999999999999998887532 267888999999999998 344
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
++..+. +|+|+++||++--.
T Consensus 270 ~v~~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 270 LVRGSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred ccCHHH---cCCCCEEEEccccc
Confidence 566655 57999999998655
No 228
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.85 E-value=8.7e-05 Score=60.78 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=58.5
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhh
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~ 107 (223)
.+|.|++|.|||.|.+|...++.|...|++|+++++..... +......+... .-.++.+..+|+|+.++...+.+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN- 84 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN- 84 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH-
Confidence 47999999999999999999999999999999999854221 11221112211 11234577899998887743333
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q 027408 108 GMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~s 128 (223)
.......+.+ .++|++
T Consensus 85 ----~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 85 ----EQVKEDLPEN-ALFNVI 100 (202)
T ss_pred ----HHHHHHHHhC-CcEEEC
Confidence 3333333334 466763
No 229
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.85 E-value=6.3e-05 Score=66.48 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=64.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHc-cCCC-eEEEEcCCCCChh-HHHhh---C--CeecCCHHhhcccCCEEEEcCCCChhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQ-LEKET---G--AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~-~~~~~---g--~~~~~~l~e~l~~aDvVv~~~p~~~~t 106 (223)
.-++++|||.|..++..++.+. -+.. +|.+|+|++...+ ..++. + +..+++.++++++||+|+.++|.++ .
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~ 206 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-N 206 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-C
Confidence 4578999999999999988764 4455 5999999864332 22222 3 3446799999999999999997332 1
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
..++..+ .+|+|+.|.-++.
T Consensus 207 ~Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 207 ATILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred CceecHH---HcCCCcEEEecCC
Confidence 2455554 4589999887764
No 230
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.84 E-value=4.5e-05 Score=64.76 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=73.1
Q ss_pred EEEEcc-cHHHHHHHHHHccCC----CeEEEEcCCCCChhH-HHh----------hCCeecCCHHhhcccCCEEEEcCCC
Q 027408 39 VGTVGC-GRIGKLLLQRLKPFN----CNLLYHDRVKMDPQL-EKE----------TGAKFEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 39 igIiG~-G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~-~~~----------~g~~~~~~l~e~l~~aDvVv~~~p~ 102 (223)
|+|||. |.+|..+|..+...| .+|..+|.++...+. ..+ ..+...+++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999998777 689999987632221 110 1223345667889999999996521
Q ss_pred --Ch---------hhhhcccHH---HHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCccEEE-eeCC
Q 027408 103 --TE---------KTRGMFDKD---RIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS-GDVW 155 (223)
Q Consensus 103 --~~---------~t~~~i~~~---~~~~mk~ga~ivn~srg~~vd~~al~~~--L~~g~i~~a~-lDv~ 155 (223)
.+ .+..+ -++ .+....|.++++|++..-=+-...+.+. +...++.|.+ +|..
T Consensus 81 ~~~~g~~r~~~~~~n~~i-~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPI-VKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHH-HHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 11 01111 122 2333458899999964332333344444 4567888888 7753
No 231
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.81 E-value=9.1e-05 Score=64.92 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=68.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHHH-----hhC--CeecCCHHhhcccCCEEEEcCCCChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~-----~~g--~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
.-++++|||.|..++..++.++. ++. +|.+|+|++...+.+. +.+ +....+.+++++.||+|+.++|.++
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~- 207 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE- 207 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC-
Confidence 45689999999999999999964 565 5999999874433222 223 3567899999999999999999654
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
.++..+. ++||+.|..++.
T Consensus 208 --Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 --PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred --CeecHhh---cCCCcEEEecCC
Confidence 5666655 569999999985
No 232
>PLN02477 glutamate dehydrogenase
Probab=97.81 E-value=0.0012 Score=59.68 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=74.1
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHH-H---hh-------CCeecCCHHhhc-
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE-K---ET-------GAKFEEDLDTML- 90 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~-~---~~-------g~~~~~~l~e~l- 90 (223)
+.+|.|++|+|.|+|++|+.+|+.|...|.+|+ +.|.+ ....+.. + +. +.+.. +.++++
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~ 279 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILV 279 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCcccee
Confidence 457999999999999999999999999999988 44543 1111111 1 00 11222 334443
Q ss_pred ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
.+||+++-|.- .+.|+++....++ =.+|+-.+.+.+ ..+ -.+.|.+..|.
T Consensus 280 ~~~DvliP~Al-----~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 280 EPCDVLIPAAL-----GGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred ccccEEeeccc-----cccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 57999988864 5678888888875 346667777776 444 45778887776
No 233
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=97.79 E-value=0.00019 Score=56.48 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=68.0
Q ss_pred CCCEEEEEc--ccHHHHHHHHHHccCCCeEEEEcCCCC--Ch--hHH-------HhhC--CeecCCHHhhcccCCEEEEc
Q 027408 35 EGKTVGTVG--CGRIGKLLLQRLKPFNCNLLYHDRVKM--DP--QLE-------KETG--AKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 35 ~g~~igIiG--~G~iG~~iA~~l~~~G~~V~~~d~~~~--~~--~~~-------~~~g--~~~~~~l~e~l~~aDvVv~~ 99 (223)
.|+||++|| .+++.++++..+..||+++.++.|... .. +.. .+.| +...+++++.++++|+|+..
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 488999999 389999999999999999999998651 22 111 1223 35568999999999999876
Q ss_pred CCC----Chh-------hhhcccHHHHhcCCCCcEEEEcC
Q 027408 100 TPL----TEK-------TRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 100 ~p~----~~~-------t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
.-- .+. ....++++.++.+|+++++..+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 553 111 11457888888888888888764
No 234
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.00014 Score=62.65 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=64.2
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
+.++.||++.|||- ..+|+.+|..|... ++.|+++.... .++.+.+++||+|+.+++
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvG---- 213 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALG---- 213 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccC----
Confidence 56899999999997 56799999999876 68888886432 368888999999999998
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
..+++..+. +|+|+++||++-..
T Consensus 214 kp~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccCHHH---cCCCCEEEEecCcc
Confidence 234566544 68999999998654
No 235
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.77 E-value=0.00031 Score=52.42 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=66.4
Q ss_pred CEEEEEc----ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 37 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 37 ~~igIiG----~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
|+|+||| -+..|..+.+.++..|++|+.+++.... -.|...+.+++|.-...|++++++| ++...-+-+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-----i~G~~~y~sl~e~p~~iDlavv~~~--~~~~~~~v~ 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-----ILGIKCYPSLAEIPEPIDLAVVCVP--PDKVPEIVD 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-----ETTEE-BSSGGGCSST-SEEEE-S---HHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-----ECcEEeeccccCCCCCCCEEEEEcC--HHHHHHHHH
Confidence 6899999 7899999999999999999999986521 2366667899985478999999999 333222223
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccE
Q 027408 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 149 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~ 149 (223)
+. ..+..+.+++..+ ..++++.+.+++..+.-
T Consensus 74 ~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 74 EA-AALGVKAVWLQPG----AESEELIEAAREAGIRV 105 (116)
T ss_dssp HH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-EE
T ss_pred HH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCEE
Confidence 33 3335667888777 67788888888877763
No 236
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.77 E-value=0.00017 Score=65.59 Aligned_cols=110 Identities=17% Similarity=0.313 Sum_probs=72.2
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEE-cCC-------CCChhHHHh-----------h----CCeecCCHH
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEKE-----------T----GAKFEEDLD 87 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~-d~~-------~~~~~~~~~-----------~----g~~~~~~l~ 87 (223)
+.+|.|++|+|.|+|++|+.+|+.|..+|++|+++ |.+ ....+...+ + +.... +.+
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~ 305 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGG 305 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCc
Confidence 45789999999999999999999999999998876 521 111111000 0 11222 344
Q ss_pred hhcc-cCCEEEEcCCCChhhhhcccHHHHhcCC-CCc-EEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 88 TMLP-KCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 88 e~l~-~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+++. +||+++-|.. .+.|+.+....++ +++ +|+-.+.+++ +.+ -.+.|.+..|.
T Consensus 306 ~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~ 362 (445)
T PRK09414 306 SPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL 362 (445)
T ss_pred cccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence 5543 6999999987 5567777666663 233 5566666666 444 55677777766
No 237
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.77 E-value=0.00018 Score=62.55 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=72.2
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCeec-----------CCHHhhcccCCEEEEcCCCCh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE-----------EDLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~-----------~~l~e~l~~aDvVv~~~p~~~ 104 (223)
++|+|+|.|.||..+|-.|...|.+|.+++|.....+..+ +.|+... ....+.....|+|++|+...+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 5799999999999999999999999999998642222121 1122110 011122457899999997432
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~ 151 (223)
+...+ +.....+.+++.+|-. ..++-.++.+.+.+.+.++.++.
T Consensus 83 -~~~al-~~l~~~l~~~t~vv~l-QNGv~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 83 -AEPAV-ASLAHRLAPGAELLLL-QNGLGSQDAVAARVPHARCIFAS 126 (305)
T ss_pred -HHHHH-HHHHhhCCCCCEEEEE-eCCCCCHHHHHHhCCCCcEEEEE
Confidence 22222 4555667788877766 44455667777777666665443
No 238
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=0.00014 Score=62.80 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=64.8
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCCh
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~ 104 (223)
.+.++.||++.|||- ..+|+.+|..|... ++.|..+.... .++++.+++||+|+.++.
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvG--- 217 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAG--- 217 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecC---
Confidence 356899999999996 67899999999876 68888876432 368888999999999986
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
..+++..+. +|+|+++||++...
T Consensus 218 -kp~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 218 -VPNLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred -CcCccCHHH---cCCCCEEEecCCCc
Confidence 234566555 57999999998655
No 239
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.76 E-value=0.00016 Score=61.02 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEE--------cCCCCChhH-H---HhhCC--eecC----------CHH-
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQL-E---KETGA--KFEE----------DLD- 87 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~--------d~~~~~~~~-~---~~~g~--~~~~----------~l~- 87 (223)
++.|+++.|-|+|.+|+.+|+.|...|++|+++ |+.....+. . .+.+. ..+. +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 589999999999999999999999999997665 554322221 1 12222 1111 222
Q ss_pred hhc-ccCCEEEEcCCCChhhhhcccHHHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 88 TML-PKCDIVVVNTPLTEKTRGMFDKDRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 88 e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~-~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+++ .+||+++-|.- .+.|+.+... .+++++.+|--+....+..++.. .|.+..|.
T Consensus 109 ~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 109 EILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL 165 (244)
T ss_dssp HGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred ccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence 555 57999999965 5678888888 88877766666665556666665 88887776
No 240
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.76 E-value=0.00011 Score=62.55 Aligned_cols=114 Identities=26% Similarity=0.307 Sum_probs=82.1
Q ss_pred ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+.+|+|+++.|||-++ +|+.++..|...++.|.++.... .++.+.+++||+|+.++- -.++
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG----~p~~ 212 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVG----KPHF 212 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecC----Cccc
Confidence 4589999999999876 59999999999999999998642 367888999999999986 2345
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~ 186 (223)
+.. ..+|+|+++|+++--.+-+ ++ ..=||-.++. ....-.+||--||.-.=+.
T Consensus 213 i~~---d~vk~gavVIDVGinrv~~----------~k---l~GDVdf~~v--------~~~a~~iTPVPGGVGPmTv 265 (283)
T COG0190 213 IKA---DMVKPGAVVIDVGINRVND----------GK---LVGDVDFDSV--------KEKASAITPVPGGVGPMTV 265 (283)
T ss_pred ccc---ccccCCCEEEecCCccccC----------Cc---eEeeccHHHH--------HHhhcccCCCCCccCHHHH
Confidence 543 3468999999998766443 33 3446644331 1122357887777654443
No 241
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.75 E-value=0.00011 Score=53.83 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=57.0
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCChhHHH---hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 027408 46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (223)
Q Consensus 46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga 122 (223)
.-+..+++.|+..|++|.+|||.-....... ..++...+++++.++.+|+|+++++- ++...+-..+....|+++.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKPP 95 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSE
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCCC
Confidence 4567899999999999999999753333322 24677778999999999999999983 3333333455667788889
Q ss_pred EEEEc
Q 027408 123 LIVNN 127 (223)
Q Consensus 123 ~ivn~ 127 (223)
+|+++
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99987
No 242
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.75 E-value=0.0001 Score=55.18 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=51.9
Q ss_pred EEEEEc-ccHHHHHHHHHHccC-CCe-EEEEcCCC-CChhHHHhhC----C---eecCCHHhhcccCCEEEEcCCCChhh
Q 027408 38 TVGTVG-CGRIGKLLLQRLKPF-NCN-LLYHDRVK-MDPQLEKETG----A---KFEEDLDTMLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 38 ~igIiG-~G~iG~~iA~~l~~~-G~~-V~~~d~~~-~~~~~~~~~g----~---~~~~~l~e~l~~aDvVv~~~p~~~~t 106 (223)
||+||| .|.+|+.+.+.|... .++ +.+++++. .........+ . ...+...+.+.++|+|++|+|.....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 699999 999999999999764 456 44556544 2122222211 1 11111223458999999999922211
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg 130 (223)
-+.. +.+++|..+|+.|..
T Consensus 81 --~~~~---~~~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 81 --ELAP---KLLKAGIKVIDLSGD 99 (121)
T ss_dssp --HHHH---HHHHTTSEEEESSST
T ss_pred --HHHH---HHhhCCcEEEeCCHH
Confidence 1112 225788899998753
No 243
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.73 E-value=6.1e-05 Score=64.78 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC-ChhHHHhhC----CeecC---CHHhhcccCCEEEEcCCCC
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-DPQLEKETG----AKFEE---DLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~-~~~~~~~~g----~~~~~---~l~e~l~~aDvVv~~~p~~ 103 (223)
.+.++++.|||.|.+|++++..|...|+ +|.+++|+.. ..++++.++ +.... ++.+.+.++|+||.|+|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 4689999999999999999999999998 5999999853 223333322 11121 2335567899999999843
No 244
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.71 E-value=0.00024 Score=62.71 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=76.1
Q ss_pred CEEEEEcccHHHHHHHHHHccC--CCeEE-EEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCC-hhhhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-EKTRGMFD 111 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~--G~~V~-~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~-~~t~~~i~ 111 (223)
.+|||||+ .+|+..++.++.. ++++. ++|++. +..+.++++|+..++++++++.+.|++++++|.+ |...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 58999999 6899999988765 46754 778865 3445677788877889999999899999998732 222222
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a 150 (223)
+-..+.++.|..++.=--=..-+.++|+++.++..+...
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 444555667765544322224456667787777766644
No 245
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.00022 Score=61.60 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=63.7
Q ss_pred ccCCCCCEEEEEcc-cHHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
+.++.||++.|||- ..+|+.+|..|... ++.|..+.... .++++.+++||+|+.++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvG---- 213 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAG---- 213 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----
Confidence 45799999999997 56799999999765 78898876432 367888999999999886
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
-.+++..+. +|+|+++||++-..
T Consensus 214 kp~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 214 VPELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CcCccCHHH---cCCCCEEEEccccc
Confidence 234666544 68999999998655
No 246
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.68 E-value=0.00012 Score=63.26 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=34.4
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 69 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~ 69 (223)
..+.++++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 357899999999999999999999999996 99999975
No 247
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.63 E-value=0.00019 Score=64.89 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhh--------
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-------- 107 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~-------- 107 (223)
.++|.|||+|.+|.++|+.|+..|.+|.++|++..........+-......+.+.+++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 468999999999999999999999999999986532211110100111233444578999888765433211
Q ss_pred --hcccHHHH--hc--CCCC-cEEEEcCCCCccCHHHHHHHHHh
Q 027408 108 --GMFDKDRI--AK--MKKG-VLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 108 --~~i~~~~~--~~--mk~g-a~ivn~srg~~vd~~al~~~L~~ 144 (223)
.++.+..+ .. +.+. .+-|--+.|+.-..+-|...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 12222222 11 1122 34455566777666667777765
No 248
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.63 E-value=0.00036 Score=60.46 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=60.8
Q ss_pred CCEEEEEcccHHHHHHHHHHcc-CCCeEE-EEcCCCCCh--hHHHhhCCee-cCCHHhhcc-----cCCEEEEcCCCChh
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP--QLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK 105 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~--~~~~~~g~~~-~~~l~e~l~-----~aDvVv~~~p~~~~ 105 (223)
..+|||||.|.||+.++..+.. -++++. ++|+++... ..++++|+.. +++.+++++ +.|+|+.++|..
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 4689999999999997777754 466754 677765322 4566778764 468999984 589999999832
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
.+ -+-.....+.|..+|+-+.
T Consensus 82 ~H---~e~a~~a~eaGk~VID~sP 102 (302)
T PRK08300 82 AH---VRHAAKLREAGIRAIDLTP 102 (302)
T ss_pred HH---HHHHHHHHHcCCeEEECCc
Confidence 21 1223334566778877763
No 249
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.63 E-value=0.00016 Score=56.85 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=49.6
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC-Cee-cCCH-HhhcccCCEEEEcCCC
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-AKF-EEDL-DTMLPKCDIVVVNTPL 102 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g-~~~-~~~l-~e~l~~aDvVv~~~p~ 102 (223)
..+|+|++|.|||.|.+|...++.|...|++|.++++.. ..+... ++ +.. ...+ ++-+.++|+|+.++..
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~-~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaaT~d 80 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI-CKEMKE-LPYITWKQKTFSNDDIKDAHLIYAATNQ 80 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc-CHHHHh-ccCcEEEecccChhcCCCceEEEECCCC
Confidence 357999999999999999999999999999999998643 233222 22 111 0111 2236789999888763
No 250
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.63 E-value=0.00023 Score=62.83 Aligned_cols=66 Identities=27% Similarity=0.337 Sum_probs=44.5
Q ss_pred CEEEEEcccHHHHHHHHHHccC-CCeEEE-EcCCCCChh-HHHhh------------------CCeecCCHHhhcccCCE
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQ-LEKET------------------GAKFEEDLDTMLPKCDI 95 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~~-~d~~~~~~~-~~~~~------------------g~~~~~~l~e~l~~aDv 95 (223)
.+|||+|+|+||+.+++.+... ++++.+ +|+++.... .++.. ++....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 4799999999999999988754 788664 443321111 11111 22333567888888999
Q ss_pred EEEcCCC
Q 027408 96 VVVNTPL 102 (223)
Q Consensus 96 Vv~~~p~ 102 (223)
|+.|+|.
T Consensus 82 VIdaT~~ 88 (341)
T PRK04207 82 VVDATPG 88 (341)
T ss_pred EEECCCc
Confidence 9999983
No 251
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.62 E-value=0.00047 Score=63.17 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhhCCeec--CCHHhhcccCCEEEEcCCCChh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
-+.+++|+|+|+|..|.++|+.|+..|++|.++|.++... +..+..|+... ....+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 3678999999999999999999999999999999764211 12334465432 2234556789999887 43322
Q ss_pred hhhc-----------ccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408 106 TRGM-----------FDK-DRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (223)
Q Consensus 106 t~~~-----------i~~-~~~-~~mk~ga~ivn~srg~~vd~~al~~~L~~g 145 (223)
+... +.+ +.+ ...+...+-|--+.|+.-..+-+...|+..
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 2211 111 122 222223344656678777777677777653
No 252
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.60 E-value=0.00028 Score=61.80 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=69.0
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh---h----CCeecCCHHhhcccCCEEEEcC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---T----GAKFEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~----g~~~~~~l~e~l~~aDvVv~~~ 100 (223)
+..+||+|||.|.+|..+|..+...|. +|..+|+++.... .... . .+....+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455799999999999999999887784 8999998764221 1111 1 12223566 4678999999976
Q ss_pred CCC--h--------------hhhhcccHHH---HhcCCCCcEEEEcCCCCccCHHHHHHHHH--hCCccEEE
Q 027408 101 PLT--E--------------KTRGMFDKDR---IAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS 151 (223)
Q Consensus 101 p~~--~--------------~t~~~i~~~~---~~~mk~ga~ivn~srg~~vd~~al~~~L~--~g~i~~a~ 151 (223)
-.. + .+..++ .+. +....|.+.+++++...=+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 321 1 111111 222 22334677899988544333444444322 24566655
No 253
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.59 E-value=0.00034 Score=60.89 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=68.1
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHcc-------CCCeEEEEcCCCC--C--hhHHHh-----------------hCCeecC
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKP-------FNCNLLYHDRVKM--D--PQLEKE-----------------TGAKFEE 84 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~-------~G~~V~~~d~~~~--~--~~~~~~-----------------~g~~~~~ 84 (223)
+-.-++|+|||.|++|+++|+.+.. |..+|.-|-+... . ..+.+- .++..++
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 3455789999999999999998853 2234554443221 1 111111 1244568
Q ss_pred CHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408 85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI 132 (223)
Q Consensus 85 ~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~ 132 (223)
++.+.+.+||+++..+| .+...-+.+++..+.|+++..|+...|--
T Consensus 98 dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred hHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 99999999999999999 33333356888899999999999987743
No 254
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.58 E-value=0.0002 Score=62.52 Aligned_cols=68 Identities=26% Similarity=0.340 Sum_probs=51.3
Q ss_pred CEEEEEcccHHHH-HHHHHHccCC--Ce-EEEEcCCCC-ChhHHHhhCCe-ecCCHHhhccc--CCEEEEcCCCCh
Q 027408 37 KTVGTVGCGRIGK-LLLQRLKPFN--CN-LLYHDRVKM-DPQLEKETGAK-FEEDLDTMLPK--CDIVVVNTPLTE 104 (223)
Q Consensus 37 ~~igIiG~G~iG~-~iA~~l~~~G--~~-V~~~d~~~~-~~~~~~~~g~~-~~~~l~e~l~~--aDvVv~~~p~~~ 104 (223)
.+|||||+|.++. ..+..++..+ +. +.++|+++. ....++++++. .+++++++++. .|+|++++|..-
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~ 79 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNAL 79 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChh
Confidence 5899999997764 5788887765 35 567788763 34566777874 67899999975 699999999443
No 255
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00054 Score=58.89 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC-ChhHHHhhCCe----ecCCHHhh--cccCCEEEEcCCCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-DPQLEKETGAK----FEEDLDTM--LPKCDIVVVNTPLT 103 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~-~~~~~~~~g~~----~~~~l~e~--l~~aDvVv~~~p~~ 103 (223)
....|+++.|+|.|..+++++..|+..|. +|.+++|+.. ..++++.++-. ....+.++ ..++|+||.++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45679999999999999999999999995 7999999763 33333333310 11122222 22699999999954
Q ss_pred hhhh---hcccHHHHhcCCCCcEEEEc
Q 027408 104 EKTR---GMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 104 ~~t~---~~i~~~~~~~mk~ga~ivn~ 127 (223)
-.-. ..++ ...++++.++.++
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~ 225 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDV 225 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEe
Confidence 3322 1222 4556666666655
No 256
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.56 E-value=0.0014 Score=57.20 Aligned_cols=95 Identities=8% Similarity=-0.002 Sum_probs=69.9
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCh-------hHH-----------Hhh-------------CCeecCC--HHhhcccC
Q 027408 47 IGKLLLQRLKPFNCNLLYHDRVKMDP-------QLE-----------KET-------------GAKFEED--LDTMLPKC 93 (223)
Q Consensus 47 iG~~iA~~l~~~G~~V~~~d~~~~~~-------~~~-----------~~~-------------g~~~~~~--l~e~l~~a 93 (223)
||..||..+...|++|..||+++... +.. ... .+....+ +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 68899999999999999999987321 000 001 1222322 55788999
Q ss_pred CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (223)
Q Consensus 94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~ 143 (223)
|+|+.++|.+.+.+..+..+..+.++++++|.+ .-+.+....|.+.+.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcC
Confidence 999999999999998888888899999999944 445566677777664
No 257
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00014 Score=60.47 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=49.9
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhhCCee-------cCCHHhh-cccCCEEEEcCCCChh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKF-------EEDLDTM-LPKCDIVVVNTPLTEK 105 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~-------~~~l~e~-l~~aDvVv~~~p~~~~ 105 (223)
|++.|+|+|.+|..+|+.|...|++|+.+|+++...+. ..+..... .+.|+++ +.++|+++.++..+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 58999999999999999999999999999987643332 11233221 1234444 5789999998885544
No 258
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.56 E-value=0.00073 Score=57.65 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=63.3
Q ss_pred CEEEEEc-ccHHHHHHHHHHcc-CCCeEE-EEcCCCC-C--hhHHHh-----hCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408 37 KTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKM-D--PQLEKE-----TGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 37 ~~igIiG-~G~iG~~iA~~l~~-~G~~V~-~~d~~~~-~--~~~~~~-----~g~~~~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
.+|+|+| +|+||+.+++.+.. -++++. ++|+... . ...... .++..+++++++...+|+|+.++| |.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~--p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT--PE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC--hH
Confidence 4899999 69999999999875 578854 6775321 1 111111 345556789888667999999997 33
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccC-HHHHHHHHHhCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNARGAIMD-TQAVVDACSSGH 146 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd-~~al~~~L~~g~ 146 (223)
.. .+.....++.|.-+|....|--.+ .+.|.++.++..
T Consensus 80 ~~---~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g 118 (266)
T TIGR00036 80 GV---LNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAG 118 (266)
T ss_pred HH---HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCC
Confidence 32 233444455665566544453222 233444444433
No 259
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.54 E-value=0.0015 Score=59.51 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=72.9
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHH--------------Hhh-----CCeec
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE--------------KET-----GAKFE 83 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~--------------~~~-----g~~~~ 83 (223)
+.+|.|+||.|-|+|++|+..|+.|...|.+|+ +.|.+ ....+.. ..+ +.++.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 457999999999999999999999999999988 55544 1111111 000 22333
Q ss_pred CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 84 ~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+.++++ -.||+.+-|.- .+.|+.+..+.+ +.++.+|--+.......+ -.+.|.+..|.
T Consensus 312 -~~~~~~~~~cDI~iPcA~-----~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~ 371 (454)
T PTZ00079 312 -PGKKPWEVPCDIAFPCAT-----QNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVI 371 (454)
T ss_pred -CCcCcccCCccEEEeccc-----cccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcE
Confidence 233333 46999888764 677888877766 556666665555555554 44667776665
No 260
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.54 E-value=0.00053 Score=59.59 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=46.0
Q ss_pred CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhh-------C--Ce-ecCCHHhhcccCCEEEEcCCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-------G--AK-FEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~-------g--~~-~~~~l~e~l~~aDvVv~~~p~ 102 (223)
++|+|||.|.+|+.+|..|...| .+|.++|++....+ .+.++ + .. ...+.+ .+++||+|++++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCC
Confidence 48999999999999999998888 47999999763222 22211 1 11 123344 47899999999864
No 261
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.53 E-value=0.0016 Score=56.69 Aligned_cols=141 Identities=12% Similarity=0.106 Sum_probs=83.6
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee------------cCCHHhhcccCCEEEEcCCCCh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF------------EEDLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~------------~~~l~e~l~~aDvVv~~~p~~~ 104 (223)
++|.|+|.|.||.-++.+|...|..|..+.|.+. .+..++.|... .....+.+..+|+|++++....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 5899999999999999999999988888888654 33333334321 1122345568999999997433
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCC-ccCCCCeEEccCCCCCc
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTT 182 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~-l~~~~nv~~tPH~a~~t 182 (223)
... . -+.....+++.+.|+-. .-++=.++.+.+.....++. .++..+...-..+.+- ......+.+.+..++.+
T Consensus 80 ~~~-a-l~~l~~~~~~~t~vl~l-qNG~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEE-A-LPSLAPLLGPNTVVLFL-QNGLGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHH-H-HHHhhhcCCCCcEEEEE-eCCCcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 322 2 25666667777776654 33444555666666666554 3333332221111111 12234566666655544
No 262
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.53 E-value=0.00024 Score=58.13 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=58.4
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h-HHH---hhC--C--e--
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q-LEK---ETG--A--K-- 81 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~-~~~---~~g--~--~-- 81 (223)
..|.+++|.|+|+|.+|..+|+.|...|. ++.++|+..... + .++ +.+ + .
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 699999762100 0 001 111 1 0
Q ss_pred --ec--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCC
Q 027408 82 --FE--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119 (223)
Q Consensus 82 --~~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk 119 (223)
.. .+++++++++|+|+.|+. +..++..+++...+.-+
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT 137 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 11 234567888999887764 55666666665555433
No 263
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.53 E-value=0.00052 Score=59.10 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=58.0
Q ss_pred CEEEEEcccHHHHHHHHHHc-cCCCeEE-EEcCCCCC--hhHHHhhCCe-ecCCHHhhcc--cCCEEEEcCCCChhhhhc
Q 027408 37 KTVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMD--PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~-~~G~~V~-~~d~~~~~--~~~~~~~g~~-~~~~l~e~l~--~aDvVv~~~p~~~~t~~~ 109 (223)
.+|||||.|.||+.++..+. .-++++. ++|+++.+ .+.++++|+. .+.+.++++. +.|+|++++|.....
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~--- 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA--- 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH---
Confidence 47999999999998876665 3467755 67776643 2456667875 3457888885 589999999933221
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 027408 110 FDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 110 i~~~~~~~mk~ga~ivn~s 128 (223)
+-....++.|..+++-+
T Consensus 79 --e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 79 --RHARLLAELGKIVIDLT 95 (285)
T ss_pred --HHHHHHHHcCCEEEECC
Confidence 23334455666665544
No 264
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=97.51 E-value=0.00098 Score=58.00 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=52.1
Q ss_pred CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcC
Q 027408 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~ 100 (223)
.+.|++|++||- +++.++++..+..+|+++.++.|..-.++... .....++++++++++|+|....
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECC
Confidence 489999999996 69999999999999999999998642221111 2355689999999999998754
No 265
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.50 E-value=0.00024 Score=64.48 Aligned_cols=107 Identities=14% Similarity=0.054 Sum_probs=67.4
Q ss_pred CEEEEEcccHHHHHHHH---HH---ccCCCeEEEEcCCCCChhHHH--------hh----CCeecCCHHhhcccCCEEEE
Q 027408 37 KTVGTVGCGRIGKLLLQ---RL---KPFNCNLLYHDRVKMDPQLEK--------ET----GAKFEEDLDTMLPKCDIVVV 98 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~---~l---~~~G~~V~~~d~~~~~~~~~~--------~~----g~~~~~~l~e~l~~aDvVv~ 98 (223)
.+|+|||.|.+|.+.+. .+ ...|.+|..||+++...+... .. .+...+++++.+++||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 47999999999998655 22 334679999999763222111 11 12345688899999999999
Q ss_pred cCCCCh--h-hh--------h-------------c--------ccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH
Q 027408 99 NTPLTE--K-TR--------G-------------M--------FDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS 143 (223)
Q Consensus 99 ~~p~~~--~-t~--------~-------------~--------i~~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~ 143 (223)
++|... . .+ + + +-.+..+.++ |.++++|.+..--+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 998310 0 00 0 0 1123333333 689999998877666666665544
No 266
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.50 E-value=0.0003 Score=69.95 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=47.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHccC-CCe-------------EEEEcCCCCChh-HHHhh-CC---ee-cCCHHhh---cc
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPF-NCN-------------LLYHDRVKMDPQ-LEKET-GA---KF-EEDLDTM---LP 91 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~-G~~-------------V~~~d~~~~~~~-~~~~~-g~---~~-~~~l~e~---l~ 91 (223)
..++|+|||+|.||+.+|+.|... +.+ |.+.|++....+ .++.+ ++ .. +.+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 578999999999999999999754 333 888998753222 22223 32 22 3455555 46
Q ss_pred cCCEEEEcCCC
Q 027408 92 KCDIVVVNTPL 102 (223)
Q Consensus 92 ~aDvVv~~~p~ 102 (223)
++|+|++|+|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999994
No 267
>PRK10206 putative oxidoreductase; Provisional
Probab=97.50 E-value=0.00025 Score=62.61 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=46.3
Q ss_pred EEEEEcccHHHHH-HHHHH-cc-CCCeEE-EEcCCCCChhHHHhhC-CeecCCHHhhcc--cCCEEEEcCCCC
Q 027408 38 TVGTVGCGRIGKL-LLQRL-KP-FNCNLL-YHDRVKMDPQLEKETG-AKFEEDLDTMLP--KCDIVVVNTPLT 103 (223)
Q Consensus 38 ~igIiG~G~iG~~-iA~~l-~~-~G~~V~-~~d~~~~~~~~~~~~g-~~~~~~l~e~l~--~aDvVv~~~p~~ 103 (223)
+|||||+|.+++. .+..+ .. -++++. ++|+++...+.+++++ +..+++++++++ +.|+|++++|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 7999999998753 34544 32 357765 7888754344445554 456679999995 579999999943
No 268
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.50 E-value=0.0025 Score=53.69 Aligned_cols=91 Identities=14% Similarity=0.210 Sum_probs=73.4
Q ss_pred HHHHHHHHccCCCeEEEEcCCCC--Chh---HHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 027408 48 GKLLLQRLKPFNCNLLYHDRVKM--DPQ---LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (223)
Q Consensus 48 G~~iA~~l~~~G~~V~~~d~~~~--~~~---~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga 122 (223)
|..+|-.+...|++|+..+|+.. .++ ..++.|++.+++-.+..+.+.+.++-+|....|.++. ++.++.++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 66788888889999999999863 222 2345688888888899999999999999998887764 88999999999
Q ss_pred EEEEcCCCCccCHHHHHHHH
Q 027408 123 LIVNNARGAIMDTQAVVDAC 142 (223)
Q Consensus 123 ~ivn~srg~~vd~~al~~~L 142 (223)
+|.|+..-+. -.|+..|
T Consensus 112 VicnTCT~sp---~vLy~~L 128 (340)
T COG4007 112 VICNTCTVSP---VVLYYSL 128 (340)
T ss_pred EecccccCch---hHHHHHh
Confidence 9999987554 4566666
No 269
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=97.50 E-value=0.0012 Score=57.23 Aligned_cols=95 Identities=23% Similarity=0.367 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCC--ChhH---HHhhCC--eecCCHHhhcccCCEEEEcCCC
Q 027408 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQL---EKETGA--KFEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~---~~~~g~--~~~~~l~e~l~~aDvVv~~~p~ 102 (223)
.+.|.+|+++|- +++.++++..++.+|++|.+..|... +.+. +++.|. ...+++++.++++|+|....-.
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~ 226 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ 226 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence 489999999998 49999999999999999999998642 2222 223343 3468999999999999774211
Q ss_pred C------hh-----hhhcccHHHHhcCCCCcEEEEc
Q 027408 103 T------EK-----TRGMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 103 ~------~~-----t~~~i~~~~~~~mk~ga~ivn~ 127 (223)
. ++ ...-++++.++..++++++..+
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc 262 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP 262 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence 0 00 0123455666666666666544
No 270
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00075 Score=60.36 Aligned_cols=107 Identities=21% Similarity=0.385 Sum_probs=74.2
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC------------------Ch-hHHHhhCCeecCCHHhhc-c
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM------------------DP-QLEKETGAKFEEDLDTML-P 91 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~------------------~~-~~~~~~g~~~~~~l~e~l-~ 91 (223)
..|.|+||+|-|+|++|+..|+.+...|.+|++++-+.. .. ......+.+..++ ++++ .
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~ 281 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV 281 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc
Confidence 359999999999999999999999888999988876543 00 1122234455533 5655 4
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146 (223)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~ 146 (223)
+||+.+-|.- .+.|+.+...+++.. +|+-.+.+++- .+|--..++.|-
T Consensus 282 ~cDIl~PcA~-----~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGI 329 (411)
T COG0334 282 DCDILIPCAL-----ENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGI 329 (411)
T ss_pred cCcEEccccc-----ccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCC
Confidence 6998877764 678888888888865 66666666654 444444444443
No 271
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.48 E-value=0.00083 Score=58.86 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=67.8
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhcc---cCCEEEEcCCCCh
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP---KCDIVVVNTPLTE 104 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l~---~aDvVv~~~p~~~ 104 (223)
..|++|.|+|.|.+|...++.++..|. +|++.++++...+.++++|+..+ .+++++.. ..|+|+-++.. +
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~ 246 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-P 246 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-H
Confidence 368999999999999999999999998 58889987766677777886432 13334332 27999888762 1
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
. .....++.++++..++.++.
T Consensus 247 ~----~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 S----SINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H----HHHHHHHHhhcCCEEEEEcc
Confidence 1 12567788899999988875
No 272
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.47 E-value=0.00075 Score=59.74 Aligned_cols=93 Identities=16% Similarity=0.203 Sum_probs=58.7
Q ss_pred CEEEEEcc-cHHHHHHHHHHccC-CCeEE-EEcCCC-CChhHHHhhC----C--eecC--CHHhhcccCCEEEEcCCCCh
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVK-MDPQLEKETG----A--KFEE--DLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~-G~~V~-~~d~~~-~~~~~~~~~g----~--~~~~--~l~e~l~~aDvVv~~~p~~~ 104 (223)
++|+|+|. |.+|+.+++.|... +.++. ++++.. ........++ . ..+. +.++++.++|+|++|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 47999998 99999999999877 66777 445433 1111211111 0 0122 45666678999999999332
Q ss_pred hhhhcccHHHHhc-CCCCcEEEEcCCCCccCH
Q 027408 105 KTRGMFDKDRIAK-MKKGVLIVNNARGAIMDT 135 (223)
Q Consensus 105 ~t~~~i~~~~~~~-mk~ga~ivn~srg~~vd~ 135 (223)
. .+.... .+.|..+|+.|..--.+.
T Consensus 81 s------~~~~~~~~~~G~~VIDlS~~fR~~~ 106 (346)
T TIGR01850 81 S------AELAPELLAAGVKVIDLSADFRLKD 106 (346)
T ss_pred H------HHHHHHHHhCCCEEEeCChhhhcCC
Confidence 1 233332 357899999986655553
No 273
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.47 E-value=0.00058 Score=59.20 Aligned_cols=63 Identities=24% Similarity=0.375 Sum_probs=44.2
Q ss_pred CEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHh---h----C----CeecCCHHhhcccCCEEEEcC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE---T----G----AKFEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~---~----g----~~~~~~l~e~l~~aDvVv~~~ 100 (223)
++|+|||.|.+|..+|..+...|. +|..+|+++...+. ..+ . + +....+.+ .+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence 689999999999999999987664 99999986532211 111 0 1 11224554 478999999986
No 274
>PRK11579 putative oxidoreductase; Provisional
Probab=97.47 E-value=0.00049 Score=60.68 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=45.8
Q ss_pred CEEEEEcccHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhh-CCeecCCHHhhcc--cCCEEEEcCCC
Q 027408 37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPL 102 (223)
Q Consensus 37 ~~igIiG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~e~l~--~aDvVv~~~p~ 102 (223)
.+|||||+|.||+. .+..++.. ++++. ++|++.. .....+ +...+++++++++ +.|+|++|+|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDAT--KVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHH--HHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 48999999999984 56666543 78865 6777542 222233 3455689999995 57999999994
No 275
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.46 E-value=0.0005 Score=60.48 Aligned_cols=90 Identities=13% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC---CCChhHHHhhCCeecCC----HHh--hcccCCEEEEcCCCChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV---KMDPQLEKETGAKFEED----LDT--MLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~---~~~~~~~~~~g~~~~~~----l~e--~l~~aDvVv~~~p~~~~ 105 (223)
.|.+|.|+|.|.+|...++.++..|++|++++++ +...+.++++|+..+.. ..+ .....|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 6899999999999999999999999999999873 33445566777654321 111 1235799988886211
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
...+.++.++++..++.++.
T Consensus 251 ----~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ----LAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ----HHHHHHHHccCCcEEEEEec
Confidence 22567788898888877764
No 276
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00033 Score=61.75 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=47.5
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-hCC-eec---CCHHhhcccCCEEEE
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGA-KFE---EDLDTMLPKCDIVVV 98 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~-~~~---~~l~e~l~~aDvVv~ 98 (223)
+++|||||-|..|+.++...+.+|+++++.|+++..+...-. .-+ ..+ ..+.++.+.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999988744432111 111 112 257788899999976
No 277
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.45 E-value=0.00065 Score=60.03 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=57.8
Q ss_pred CEEEEEcc-cHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhhC-Ce-----ecCCHHh-hcccCCEEEEcCCCChhh
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETG-AK-----FEEDLDT-MLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g-~~-----~~~~l~e-~l~~aDvVv~~~p~~~~t 106 (223)
++|+|+|. |.+|+.+++.+... ++++. ++++...........+ +. .+.++++ ...++|+|++|+|.....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~ 82 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM 82 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence 68999997 99999999999876 67764 4554332211221111 11 1223333 456799999999943221
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCH
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDT 135 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~ 135 (223)
+-....++.|..+||.|..--.+.
T Consensus 83 -----~~v~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 83 -----DLAPQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred -----HHHHHHHhCCCEEEECCcccCCCC
Confidence 122222357899999997666654
No 278
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.45 E-value=0.0027 Score=54.34 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=105.8
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccC----CC-------eEEEEcCCCC----C---hh----HHHhhCCeecCCHHh
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----D---PQ----LEKETGAKFEEDLDT 88 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~---~~----~~~~~g~~~~~~l~e 88 (223)
+..|...+|.|+|.|.-|..+|+.+... |. +++.+|+... . .+ .++...-....+|.|
T Consensus 20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e 99 (279)
T cd05312 20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE 99 (279)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence 4578899999999999999999998765 76 6889998631 0 11 111111012358999
Q ss_pred hcc--cCCEEEEcCCCChhhhhcccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH--hCC-ccEEEeeCCCCCCC
Q 027408 89 MLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGH-IAGYSGDVWNPQPA 160 (223)
Q Consensus 89 ~l~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~--~g~-i~~a~lDv~~~ep~ 160 (223)
+++ ++|+++=+.- ..++++++.++.|. +..+|.=.|.....-|..=.++.+ +|+ |.+.+...-.-+..
T Consensus 100 ~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~ 175 (279)
T cd05312 100 VVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYN 175 (279)
T ss_pred HHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeC
Confidence 999 8898876542 24789999999998 789999999887644433334443 355 44333221111110
Q ss_pred CCCCCccCCCCeEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHcCC
Q 027408 161 PKDHPWRYMPNQAMTPHVSGT-----TIDAQLRYAAGVKDMLDRYFKGE 204 (223)
Q Consensus 161 ~~~~~l~~~~nv~~tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~g~ 204 (223)
......-+..|+++-|=++-. .....+.|...+++.|.++..-+
T Consensus 176 Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~ 224 (279)
T cd05312 176 GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDE 224 (279)
T ss_pred CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcc
Confidence 011112346788998876632 22234556666777777766544
No 279
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.44 E-value=0.00055 Score=50.33 Aligned_cols=85 Identities=24% Similarity=0.319 Sum_probs=56.0
Q ss_pred EEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCHHhh----cccCCEEEEcCCCChhhhhcc
Q 027408 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~----l~~aDvVv~~~p~~~~t~~~i 110 (223)
|.|+|+|.+|+.+++.|+..+.+|.++++++...+.....++..+ .+.+.+ ++++|.|+++++....+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence 579999999999999999977799999987644455555554321 223222 46899999999854443 32
Q ss_pred cHHHHhcCCCCcEEE
Q 027408 111 DKDRIAKMKKGVLIV 125 (223)
Q Consensus 111 ~~~~~~~mk~ga~iv 125 (223)
-...++.+-+...++
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 244555555555554
No 280
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.44 E-value=0.00051 Score=62.45 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=50.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-hCCee-------cCCHHhh-cccCCEEEEcCCCChh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF-------EEDLDTM-LPKCDIVVVNTPLTEK 105 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~-------~~~l~e~-l~~aDvVv~~~p~~~~ 105 (223)
++|.|+|+|.+|+.+++.|...|.+|.++++++...+..+. .++.. ...++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 57999999999999999999999999999987643333322 33321 1234455 7789999999985443
No 281
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.42 E-value=0.0012 Score=56.92 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=49.8
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC----ChhHHHhhCC-----eecCCH------HhhcccCC
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM----DPQLEKETGA-----KFEEDL------DTMLPKCD 94 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~----~~~~~~~~g~-----~~~~~l------~e~l~~aD 94 (223)
+..+.++++.|+|.|..+++++..+...|. +|.+++|+.. ...+++.++. ....++ .+.+.++|
T Consensus 119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 198 (288)
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCC
Confidence 346789999999999999999999988887 6999999742 2222222211 011222 23456789
Q ss_pred EEEEcCCC
Q 027408 95 IVVVNTPL 102 (223)
Q Consensus 95 vVv~~~p~ 102 (223)
+||.++|.
T Consensus 199 ivINaTp~ 206 (288)
T PRK12749 199 ILTNGTKV 206 (288)
T ss_pred EEEECCCC
Confidence 99998884
No 282
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.41 E-value=0.00047 Score=56.79 Aligned_cols=91 Identities=23% Similarity=0.266 Sum_probs=65.7
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH---hhCCee---cCCHHhhcccCCEEEEcCCCCh
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKF---EEDLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~~g~~~---~~~l~e~l~~aDvVv~~~p~~~ 104 (223)
..+|.|++|.|||.|.+|..=++.+...|++|+++.+.. .++... ..++.. .-..++ +..+++|+.+++
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~--- 81 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATD--- 81 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCC---
Confidence 357999999999999999999999999999999999876 333222 222111 113333 345999999998
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcC
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
..-+|++.+...++-.++||+.
T Consensus 82 --d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 82 --DEELNERIAKAARERRILVNVV 103 (210)
T ss_pred --CHHHHHHHHHHHHHhCCceecc
Confidence 3345677777777777888884
No 283
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.40 E-value=0.00065 Score=62.79 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=69.6
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhh----
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR---- 107 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~---- 107 (223)
+.|++|.|+|+|.+|.+.++.|+..|++|+++|..+...+..++.|+... ....+.++++|+|+.+..-.+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 57899999999999999999999999999999975432233344566443 123455678998887643222111
Q ss_pred ------hcccHHHHh-cC-------CC-CcEEEEcCCCCccCHHHHHHHHHh
Q 027408 108 ------GMFDKDRIA-KM-------KK-GVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 108 ------~~i~~~~~~-~m-------k~-ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
.++.+-.+. .+ ++ ..+-|--+.|+.-...-+...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 122222221 11 12 233455567887777767777765
No 284
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.40 E-value=0.00048 Score=60.75 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=58.5
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC--------------------h-hH----HHhh--CC--e
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD--------------------P-QL----EKET--GA--K 81 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~--------------------~-~~----~~~~--g~--~ 81 (223)
..|.+++|.|||+|.+|..+|+.|...|. ++.++|+.... . +. ..+. ++ .
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 46999999999999999999999999998 68889885310 0 00 0111 11 1
Q ss_pred e------cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHh
Q 027408 82 F------EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116 (223)
Q Consensus 82 ~------~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~ 116 (223)
. ..+++++++++|+|+.++ .+.+++.+++.-..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~ 139 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK 139 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 1 134677888999998887 466777776655444
No 285
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.39 E-value=0.0012 Score=60.46 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=70.0
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcC--CCC-h----h
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT--PLT-E----K 105 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~--p~~-~----~ 105 (223)
++.|++|.|+|+|..|.++|+.|+..|++|.++|............|+.....-.+-+.++|+||..- |.+ | .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 47889999999999999999999999999999997542222233446543221123356799887643 211 2 1
Q ss_pred hhh-------cccH-HHHhc-C-----CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408 106 TRG-------MFDK-DRIAK-M-----KKGVLIVNNARGAIMDTQAVVDACSSG 145 (223)
Q Consensus 106 t~~-------~i~~-~~~~~-m-----k~ga~ivn~srg~~vd~~al~~~L~~g 145 (223)
... ++.+ +.+.. + +...+-|.-+.|+.-...-|...|+..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 111 1221 22222 2 223445666788887777777778763
No 286
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.38 E-value=0.00061 Score=59.00 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=42.8
Q ss_pred EEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh---h----CCeecCCHHhhcccCCEEEEcCC
Q 027408 39 VGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---T----GAKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 39 igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~----g~~~~~~l~e~l~~aDvVv~~~p 101 (223)
|+|||.|.||..+|..+...|. +|+.+|+++.... .... . .+....+.+ .+++||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence 6899999999999999886665 9999999753211 1110 0 112224554 4789999999773
No 287
>PLN02527 aspartate carbamoyltransferase
Probab=97.37 E-value=0.0027 Score=55.29 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=63.3
Q ss_pred CCCCCEEEEEccc---HHHHHHHHHHccC-CCeEEEEcCCCC--ChhH---HHhhCC--eecCCHHhhcccCCEEEEcCC
Q 027408 33 DLEGKTVGTVGCG---RIGKLLLQRLKPF-NCNLLYHDRVKM--DPQL---EKETGA--KFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 33 ~l~g~~igIiG~G---~iG~~iA~~l~~~-G~~V~~~d~~~~--~~~~---~~~~g~--~~~~~l~e~l~~aDvVv~~~p 101 (223)
++.|.||+++|-+ ++.++++..+..+ |++|.+..|..- ..+. +++.|. ...+++++.++++|+|....-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence 4899999999965 7899999998887 999999888542 2222 222233 446799999999999988432
Q ss_pred CCh------h-h-----hhcccHHHHhcCCCCcEEEEc
Q 027408 102 LTE------K-T-----RGMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 102 ~~~------~-t-----~~~i~~~~~~~mk~ga~ivn~ 127 (223)
..+ . . ...++++.++..++++++..+
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 100 0 0 133455555556666555544
No 288
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.37 E-value=0.00018 Score=53.42 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHHccC----CCeEE-EEcCC--CCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcccHH
Q 027408 43 GCGRIGKLLLQRLKPF----NCNLL-YHDRV--KMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 43 G~G~iG~~iA~~l~~~----G~~V~-~~d~~--~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
|+|.||+.+++.+... +++|. +++++ ..........+.....++++++. ..|+|+-|++..+.. +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence 8999999999999765 57754 66776 11111112223445679999998 899999997633222 33
Q ss_pred HHhcCCCCcEEEEcCCCCcc
Q 027408 114 RIAKMKKGVLIVNNARGAIM 133 (223)
Q Consensus 114 ~~~~mk~ga~ivn~srg~~v 133 (223)
..+.++.|..+|..+.+.+.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALA 95 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHH
T ss_pred HHHHHHCCCeEEEECHHHhh
Confidence 45666789999999988877
No 289
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.35 E-value=0.0018 Score=57.19 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=68.7
Q ss_pred CEEEEEcccHHHHHHHHHHccC----------CCeEE-EEcCCC-------CChhH----HHhhCC-e------ecCCHH
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVK-------MDPQL----EKETGA-K------FEEDLD 87 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~----------G~~V~-~~d~~~-------~~~~~----~~~~g~-~------~~~~l~ 87 (223)
.+|+|+|+|.||+.+++.+... +++|. ++|++. ...+. ....+. . ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3799999999999999998644 46644 556532 11111 111221 1 123788
Q ss_pred hhc--ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408 88 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA 148 (223)
Q Consensus 88 e~l--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g~i~ 148 (223)
+++ .+.|+|+.++|....+......-....++.|..+|....+.+ ...+.|.+..++....
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 888 468999999996544322222333566778888877654443 3456777777666554
No 290
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.35 E-value=0.00075 Score=57.47 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=62.5
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeecCCH---Hh----hc--ccCCEEEEcCCCC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL---DT----ML--PKCDIVVVNTPLT 103 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l---~e----~l--~~aDvVv~~~p~~ 103 (223)
..|.+|.|+|.|.+|...++.++.+|.+ |++.++++...+.++++|+..+-+. .+ +. ...|+++-++...
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 3689999999999999999999999997 8888877655666777776432111 11 11 2468888776521
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
+ .....++.++++..++.++
T Consensus 199 ~-----~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 199 A-----AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred H-----HHHHHHHHhcCCCEEEEec
Confidence 1 1245667778888777775
No 291
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=97.34 E-value=0.0015 Score=56.83 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=53.4
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH----HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL----EKETG--AKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~----~~~~g--~~~~~~l~e~l~~aDvVv~~ 99 (223)
.+.|.+|+++|- +++.++++..+..+|++|.++.|... .. +. ++..| +....+++++++++|+|..-
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 489999999997 89999999999999999999998642 21 22 23344 34567999999999999875
No 292
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=97.33 E-value=0.0019 Score=56.99 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-C-hhHH-------HhhC--CeecCCHHhhcccCCEEEEcC
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQLE-------KETG--AKFEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~~-------~~~g--~~~~~~l~e~l~~aDvVv~~~ 100 (223)
.+.|.+|++||- .++.++++..+..+|++|.++.|... . .+.. +..| +...++++++++++|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 589999999996 78999999999999999999998642 1 1221 1224 445689999999999998833
Q ss_pred -----CC-C--hh------hhhcccHHHHhcCCCCcEEEEc
Q 027408 101 -----PL-T--EK------TRGMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 101 -----p~-~--~~------t~~~i~~~~~~~mk~ga~ivn~ 127 (223)
.. . ++ ....++++.++.+|++++|..+
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp 271 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC 271 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence 11 0 00 0134556666666666665544
No 293
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=97.33 E-value=0.0017 Score=54.84 Aligned_cols=89 Identities=18% Similarity=0.340 Sum_probs=58.9
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~ 115 (223)
-.++-|+|.|.+++.+++.++..|++|+++|+.+. ... +.....++.+....| .+.+
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~---~~~----------~~~~~~~~~~~~~~~----------~~~~ 156 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA---EFP----------EDLPDGVATLVTDEP----------EAEV 156 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc---ccc----------ccCCCCceEEecCCH----------HHHH
Confidence 35899999999999999999999999999997542 110 011123443332222 2222
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 027408 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (223)
Q Consensus 116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i 147 (223)
..+.+...+|-++++.-.|.+.|..+|.+...
T Consensus 157 ~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~ 188 (246)
T TIGR02964 157 AEAPPGSYFLVLTHDHALDLELCHAALRRGDF 188 (246)
T ss_pred hcCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence 23456677777778888888888888854443
No 294
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.32 E-value=0.00079 Score=63.81 Aligned_cols=92 Identities=21% Similarity=0.240 Sum_probs=64.6
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee----cCCHHhh----cccCCEEEEcCCCChhhh
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EEDLDTM----LPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~l~e~----l~~aDvVv~~~p~~~~t~ 107 (223)
..+|.|+|+|++|+.+++.|...|.++++.|.++...+..++.|... .++.+-+ +++||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 45799999999999999999999999999998875555556666432 1233222 468999999999766554
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q 027408 108 GMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~sr 129 (223)
.+ -...+.+.|...++--++
T Consensus 480 ~i--~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KI--VELCQQHFPHLHILARAR 499 (601)
T ss_pred HH--HHHHHHHCCCCeEEEEeC
Confidence 43 344455556666655444
No 295
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=97.31 E-value=0.0018 Score=57.01 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=67.0
Q ss_pred CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCC-Chh--------HHHhhC--CeecCCHHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~~--------~~~~~g--~~~~~~l~e~l~~aDvVv~~ 99 (223)
.+.|++|++||-+ ++.++++..+..+|++|.++.|... ..+ .++..| +...+++++.++++|+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 5899999999975 6899999999999999999998642 211 122234 44568999999999999874
Q ss_pred C----CC-Ch---h-----hhhcccHHHHhcC-CCCcEEEEcC
Q 027408 100 T----PL-TE---K-----TRGMFDKDRIAKM-KKGVLIVNNA 128 (223)
Q Consensus 100 ~----p~-~~---~-----t~~~i~~~~~~~m-k~ga~ivn~s 128 (223)
. .. .+ + ....++++.++.. |++++|..+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 10 00 0 0223567777775 6777777664
No 296
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.31 E-value=0.0022 Score=59.14 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----------------------CC
Q 027408 33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------------GA 80 (223)
Q Consensus 33 ~l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g~ 80 (223)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||.-...+..+.+ ++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 589999999996 4578899999999999999999964222221112 12
Q ss_pred eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHH
Q 027408 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139 (223)
Q Consensus 81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~ 139 (223)
....++++.++++|+|++++.-.+ .+.+-.++..+.|++..+|+|. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 445567789999999999998332 3333223445667766678885 43 45655553
No 297
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=97.30 E-value=0.0014 Score=57.21 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcc---cHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEE
Q 027408 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 98 (223)
Q Consensus 33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~ 98 (223)
.+.|.+|+++|- +++.++++..+..+|+ +|.+..|....++......+...++++++++++|+|..
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 488999999997 6999999999999999 89999886422221111235556899999999999977
No 298
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.0013 Score=56.77 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=52.3
Q ss_pred CCCCCEEEEEc---ccHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhhC-C-eecCCHHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETG-A-KFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG---~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g-~-~~~~~l~e~l~~aDvVv~~ 99 (223)
.+.|++|+|+| +|++.++.++.|+.||.+|.++.|..... +.....+ . ...+..+|.++++|++.+.
T Consensus 155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l 231 (316)
T COG0540 155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML 231 (316)
T ss_pred CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence 48999999999 89999999999999999999999875333 2223322 2 3455666699999999764
No 299
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=97.29 E-value=0.00034 Score=58.95 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=60.4
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hH-------------------H---HhhC--C--ee-
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QL-------------------E---KETG--A--KF- 82 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~-------------------~---~~~g--~--~~- 82 (223)
..|..++|+|||+|.+|..+|+.|...|. ++.++|...... .. . .+.+ + ..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999999999999999887 588887643111 00 0 0111 1 11
Q ss_pred ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
. .+.+++++++|+|+.|+- +.+++..+++...+.- ..+|..+
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~---ip~v~~~ 154 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAK---KPLVSGA 154 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhC---CEEEEee
Confidence 1 134567888998887774 5666666666555543 3455544
No 300
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=97.27 E-value=0.0023 Score=56.28 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=52.9
Q ss_pred CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-h-------HHHhhC--CeecCCHHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-Q-------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~-------~~~~~g--~~~~~~l~e~l~~aDvVv~~ 99 (223)
.+.|++|++||-+ ++.++++..+..+|++|.++.|... .. + .++..| +...++++++++++|+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4899999999986 8999999999999999999987642 21 1 122234 34568999999999999885
Q ss_pred C
Q 027408 100 T 100 (223)
Q Consensus 100 ~ 100 (223)
+
T Consensus 232 ~ 232 (331)
T PRK02102 232 V 232 (331)
T ss_pred C
Confidence 3
No 301
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.27 E-value=0.001 Score=58.10 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhh--------CCee-cCCHHhhcccCCEEEEcCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--------GAKF-EEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~--------g~~~-~~~l~e~l~~aDvVv~~~p 101 (223)
.++||+|||.|.+|..+|..+...|. ++..+|++....+ .+.++ .... ..+. +.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecC
Confidence 57799999999999999999988777 7999998653221 11111 1111 1234 45789999999764
No 302
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=97.27 E-value=0.0014 Score=57.61 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=65.2
Q ss_pred CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCC-CCh-hH-------HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVK-MDP-QL-------EKETG--AKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~-~~~-~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~ 99 (223)
.+.|++|++||-+ ++.++++..+..+|++|.+..|.. ... +. ++..| +...+++++.++++|+|..-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 4889999999974 899999999999999999998863 111 11 12334 44568999999999999885
Q ss_pred CCCC--h------h-----hhhcccHHHHhcCC-CCcEEEEcC
Q 027408 100 TPLT--E------K-----TRGMFDKDRIAKMK-KGVLIVNNA 128 (223)
Q Consensus 100 ~p~~--~------~-----t~~~i~~~~~~~mk-~ga~ivn~s 128 (223)
.=.. . + ....++++.++.++ ++++|..+.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 2100 0 0 12235566666664 366665553
No 303
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.27 E-value=0.0016 Score=56.89 Aligned_cols=113 Identities=15% Similarity=0.213 Sum_probs=65.2
Q ss_pred CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHh----h------CCeecCCHHhhcccCCEEEEcCCC-
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE----T------GAKFEEDLDTMLPKCDIVVVNTPL- 102 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~----~------g~~~~~~l~e~l~~aDvVv~~~p~- 102 (223)
.||+|||.|.+|..+|..+...|. ++..+|++....+ .+.+ . .+....+.++ +++||+|+++.-.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 589999999999999998876654 6999998653221 1111 1 1222245665 7899999996542
Q ss_pred -Ch-hhhh-cc--c----H---HHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCccEE
Q 027408 103 -TE-KTRG-MF--D----K---DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY 150 (223)
Q Consensus 103 -~~-~t~~-~i--~----~---~~~~~mk~ga~ivn~srg~~vd~~al~~~--L~~g~i~~a 150 (223)
.+ .++. ++ | + +.+....+.+++++++..-=+-...+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence 11 1221 11 1 1 22333467889999984332222233333 444555555
No 304
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.24 E-value=0.001 Score=62.46 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=59.9
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCHHhh----cccCCEEEEcCCCChhhhh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~----l~~aDvVv~~~p~~~~t~~ 108 (223)
.++-|+|+|++|+.+|+.|+..|.+++++|.++...+..++.+.... .+.+-+ ++++|.++++++.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 46889999999999999999999999999987654555555554321 222211 4689999999997666554
Q ss_pred cccHHHHhcCCCCcEEEE
Q 027408 109 MFDKDRIAKMKKGVLIVN 126 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn 126 (223)
++. .. ..+.+...++-
T Consensus 498 iv~-~~-~~~~~~~~iia 513 (558)
T PRK10669 498 IVA-SA-REKRPDIEIIA 513 (558)
T ss_pred HHH-HH-HHHCCCCeEEE
Confidence 432 22 23344555543
No 305
>PRK04148 hypothetical protein; Provisional
Probab=97.24 E-value=0.0016 Score=49.84 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=53.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-----cCCHHhhcccCCEEEEcCCCChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-----EEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-----~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
+++++.+||+| -|..+|..|+..|++|++.|.++...+.++..+... ++.--++-+.+|+|...-|..+-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el 90 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDL 90 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHH
Confidence 56899999999 999999999999999999999876555555555432 23334667889999888774333
No 306
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.23 E-value=0.00096 Score=58.06 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=46.2
Q ss_pred CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhh-CCe--------ecCCHHhhcccCCEEEEcCCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-GAK--------FEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~-g~~--------~~~~l~e~l~~aDvVv~~~p~ 102 (223)
++|+|||.|.+|..+|..+...| .+|.++|++....+ .+.++ ... ...+. +.+++||+|+++++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence 47999999999999999998888 57999998753222 11111 111 11344 457899999999884
No 307
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.23 E-value=0.0016 Score=56.15 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=49.3
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhh----CC---eecC--CHHhhcccCCEEEEcCC
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKET----GA---KFEE--DLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~----g~---~~~~--~l~e~l~~aDvVv~~~p 101 (223)
.+.++++.|+|.|..|++++..|...|+ +|.++||+... .+.++.+ +. ...+ +.++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 5778999999999999999999998997 59999997522 2233322 11 1111 12345567899999988
Q ss_pred C
Q 027408 102 L 102 (223)
Q Consensus 102 ~ 102 (223)
.
T Consensus 204 ~ 204 (283)
T PRK14027 204 M 204 (283)
T ss_pred C
Confidence 3
No 308
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=97.23 E-value=0.0015 Score=57.11 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=67.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHh-hcccCCEEEEcCCCChhhhhcccHH
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-~l~~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
.|.+|.|.|.|.+|...++.++..|.+|++.++++...+.++++|+..+-+..+ .-...|+++.+.... . .-..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~----~~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G----LVPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H----HHHH
Confidence 588999999999999999999999999999988776677888888754322211 123468777766532 1 2356
Q ss_pred HHhcCCCCcEEEEcCC
Q 027408 114 RIAKMKKGVLIVNNAR 129 (223)
Q Consensus 114 ~~~~mk~ga~ivn~sr 129 (223)
.++.++++..++.++.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 7888999998888764
No 309
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=97.22 E-value=0.01 Score=50.15 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=103.4
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCC-----------eEEEEcCCCC----C---hhHHHh---h-C-CeecCCHH
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-----------NLLYHDRVKM----D---PQLEKE---T-G-AKFEEDLD 87 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-----------~V~~~d~~~~----~---~~~~~~---~-g-~~~~~~l~ 87 (223)
+..|...+|.|+|.|..|..+|+.+...+. +++.+|+... . ....+. + . -....+|.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ 99 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE 99 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence 457899999999999999999999976554 6888887631 0 011111 1 1 12235899
Q ss_pred hhcc--cCCEEEEcCCCChhhhhcccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHHh--C-CccEEEeeCCCCCC
Q 027408 88 TMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACSS--G-HIAGYSGDVWNPQP 159 (223)
Q Consensus 88 e~l~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~~--g-~i~~a~lDv~~~ep 159 (223)
|+++ +.|+++=..- ..+++.++.++.|. +..+|.=.|.....-|..=.++.+- | .|.+-+.-.+..+-
T Consensus 100 eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~ 175 (254)
T cd00762 100 DAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL 175 (254)
T ss_pred HHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc
Confidence 9999 8998875432 24789999999998 8899999998776444333333333 3 34433332221111
Q ss_pred CCCCCCccCCCCeEEccCCCCCc-----HHHHHHHHHHHHHHHHHHHcC
Q 027408 160 APKDHPWRYMPNQAMTPHVSGTT-----IDAQLRYAAGVKDMLDRYFKG 203 (223)
Q Consensus 160 ~~~~~~l~~~~nv~~tPH~a~~t-----~~~~~~~~~~~~~~i~~~~~g 203 (223)
.......-+..|+++-|=++-.. ....+.|...+.+.|.++..-
T Consensus 176 ~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~ 224 (254)
T cd00762 176 NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTE 224 (254)
T ss_pred CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCCh
Confidence 11111122567899999766322 222345555666666665543
No 310
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.22 E-value=0.00084 Score=61.80 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeecC--CHHhhcccCCEEEEcC--C-CChhh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEE--DLDTMLPKCDIVVVNT--P-LTEKT 106 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~--~l~e~l~~aDvVv~~~--p-~~~~t 106 (223)
.+.+++|.|+|+|..|+++|+.|...|.+|.++|++.... +.....|+.... ...+.+.++|+||..- | .+|..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 5789999999999999999999999999999999754222 122445665432 2234567899988763 2 23322
Q ss_pred h-------hcccHHHHhc-------C-CCC-cEEEEcCCCCccCHHHHHHHHHhC
Q 027408 107 R-------GMFDKDRIAK-------M-KKG-VLIVNNARGAIMDTQAVVDACSSG 145 (223)
Q Consensus 107 ~-------~~i~~~~~~~-------m-k~g-a~ivn~srg~~vd~~al~~~L~~g 145 (223)
. .++.+-.+.. + .+. .+-|--+.|+.-...-|...|+..
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 1 1122222221 1 122 334555567777777777777653
No 311
>PLN02342 ornithine carbamoyltransferase
Probab=97.21 E-value=0.0033 Score=55.64 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-C-hhH---HHhhC---CeecCCHHhhcccCCEEEEcC---
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQL---EKETG---AKFEEDLDTMLPKCDIVVVNT--- 100 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~---~~~~g---~~~~~~l~e~l~~aDvVv~~~--- 100 (223)
.+.|+||+++|- .++.++++..+..+|++|.++.|... . .+. ++..+ +...+++++.++++|+|....
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 589999999996 57999999999999999999998642 2 111 22233 455689999999999998763
Q ss_pred -CCChh--------hhhcccHHHHhcCCCCcEEEEc
Q 027408 101 -PLTEK--------TRGMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 101 -p~~~~--------t~~~i~~~~~~~mk~ga~ivn~ 127 (223)
-..+. ....++++.++.+|++++|..+
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 11111 1134566666666666665544
No 312
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=97.21 E-value=0.0025 Score=55.50 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-C-hhH-------HHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQL-------EKETG--AKFEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~~ 100 (223)
.+.|.+|+++|- +++.++++..+..+|++|.++.|... . .+. +++.| +...+++++.++++|+|..-.
T Consensus 145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~ 224 (304)
T TIGR00658 145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDV 224 (304)
T ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 489999999996 89999999999999999999987642 2 111 22334 345689999999999998743
Q ss_pred --CCC-----hh-----hhhcccHHHHhcCCCCcEEEEc
Q 027408 101 --PLT-----EK-----TRGMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 101 --p~~-----~~-----t~~~i~~~~~~~mk~ga~ivn~ 127 (223)
... ++ ....++++.++.+|+++++..+
T Consensus 225 w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 225 WVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred cccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 100 00 1223566666666666666544
No 313
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=97.20 E-value=0.00085 Score=56.85 Aligned_cols=101 Identities=28% Similarity=0.230 Sum_probs=66.0
Q ss_pred cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCCh------hHHHhhCCeecCCHHhhcccCCEEEEcCCC
Q 027408 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP------QLEKETGAKFEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~------~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~ 102 (223)
.|.+|+..+++|+|+ |.||..+|+-+...++.....-|..... ...+..+-....+++..+.+.|+++....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs- 239 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS- 239 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence 467999999999996 9999999999999988766665432111 11122333334456655555555544332
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCCCCccCH
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~ 135 (223)
..+-..|+.+. +|||+.|+|-++..=+|+
T Consensus 240 -~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 240 -MPKGVEIFPQH---LKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred -cCCCceechhh---ccCCeEEEcCCcCccccc
Confidence 12234455554 689999999998775544
No 314
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.17 E-value=0.001 Score=59.62 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=63.0
Q ss_pred CCCCEEEEEcc-cHHHHHHHHHHccC-CCeEEEEcCCCCChhH-HHhh------CCeecCCHHh-hcccCCEEEEcCCCC
Q 027408 34 LEGKTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQL-EKET------GAKFEEDLDT-MLPKCDIVVVNTPLT 103 (223)
Q Consensus 34 l~g~~igIiG~-G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~-~~~~------g~~~~~~l~e-~l~~aDvVv~~~p~~ 103 (223)
-..++|+|+|. |.+|+.+.+.|... +++|..+.+.....+. .... ....+.+++. .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 45669999996 99999999999877 6788776654321111 1111 1111122222 247899999999932
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV 138 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al 138 (223)
...+....|+.|..+|+.|.....+.++.
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~ 144 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAE 144 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCccc
Confidence 23455555667899999997666655433
No 315
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.16 E-value=0.0011 Score=55.25 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=60.8
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-------------------H-H---Hhh----CCee-
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-------------------L-E---KET----GAKF- 82 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-------------------~-~---~~~----g~~~- 82 (223)
..|..++|.|+|+|.+|..+|+.|...|. ++.++|....... . . ++. .+..
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 5778875421000 0 0 001 1111
Q ss_pred -----cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 83 -----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 83 -----~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
..+++++++++|+|+.|+. ++.++..+++...+. +..+|+++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 1234567888999888876 566666666555543 34566654
No 316
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.15 E-value=0.0027 Score=59.37 Aligned_cols=70 Identities=23% Similarity=0.278 Sum_probs=47.4
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCe--ecCCHHhhc-ccCCEEEEcCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAK--FEEDLDTML-PKCDIVVVNTP 101 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~--~~~~l~e~l-~~aDvVv~~~p 101 (223)
..+.++++.|+|.|.+|++++..|...|++|++++|+... .+.+..++.. ...++.+.. ..+|+|+.++|
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~ 448 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTS 448 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEeccc
Confidence 3578999999999999999999999999999999987422 2222233221 112222222 34677777776
No 317
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=97.14 E-value=0.002 Score=56.84 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=52.5
Q ss_pred CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-h-------HHHhhC--CeecCCHHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-Q-------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~-------~~~~~g--~~~~~~l~e~l~~aDvVv~~ 99 (223)
.+.|.+|++||-+ ++.++++..+..+|+++.++.|..- .. + .++..| +...+++++.++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 5899999999975 7899999999999999999988642 21 1 122234 45568999999999999885
No 318
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.13 E-value=0.0063 Score=52.71 Aligned_cols=107 Identities=13% Similarity=0.181 Sum_probs=75.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhh-------
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR------- 107 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~------- 107 (223)
.|++++|||-=.--..+++.|.+.|++|.++.-... + ....|+...++.+++++++|+|+.-+|.+.+..
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~--~-~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL--D-HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc--c-cccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 478999999999999999999999999987664321 1 122366666678899999999998888543211
Q ss_pred ---hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccE
Q 027408 108 ---GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 149 (223)
Q Consensus 108 ---~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~ 149 (223)
--++.+.++.|++++.++ ++.+. .. +-+.+.+.++..
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~ 117 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL 117 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence 113678999999998554 33322 22 345566777763
No 319
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.13 E-value=0.0016 Score=59.17 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=65.1
Q ss_pred CEEEEEcccHHHHHHHHHHccC----------CCeE-EEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF----------NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT 103 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~----------G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~ 103 (223)
.+|||+|+|.||+.+++.+... +.+| .+++++..........+....+++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4799999999999998877432 3454 46677542211111122345578999985 579999998743
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCcc
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 148 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~ 148 (223)
... ..-..+.++.|..+|....+... .-+.|.++.++....
T Consensus 84 ~~~----~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPA----RELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHH----HHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 211 12233566778777755443222 235566666666554
No 320
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.12 E-value=0.0017 Score=61.84 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=62.1
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee----cCCHHhh----cccCCEEEEcCCCChhhh
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EEDLDTM----LPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~l~e~----l~~aDvVv~~~p~~~~t~ 107 (223)
..+|-|+|+|++|+.+++.|.+.|.++++.|.++...+..++.|... .++.+-+ ++++|.+++++++.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 46799999999999999999999999999998775555555556532 1233322 458999999998666554
Q ss_pred hcccHHHHhcCCCCcEEEE
Q 027408 108 GMFDKDRIAKMKKGVLIVN 126 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn 126 (223)
.+ ....+.+.|+..++-
T Consensus 480 ~i--~~~ar~~~p~~~iia 496 (621)
T PRK03562 480 QL--VELVKEHFPHLQIIA 496 (621)
T ss_pred HH--HHHHHHhCCCCeEEE
Confidence 43 334444555555544
No 321
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=97.11 E-value=0.0011 Score=50.28 Aligned_cols=128 Identities=19% Similarity=0.240 Sum_probs=73.8
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 027408 46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125 (223)
Q Consensus 46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv 125 (223)
.+.....+.|+. |++|.+++.. .. ..+.+.++++|+++..... -++++.++.+++=..|.
T Consensus 6 ~~~~~~~~~l~~-~~~v~~~~~~--~~-----------~~~~~~l~~~d~ii~~~~~------~~~~~~l~~~~~Lk~I~ 65 (133)
T PF00389_consen 6 PLPDEEIERLEE-GFEVEFCDSP--SE-----------EELAERLKDADAIIVGSGT------PLTAEVLEAAPNLKLIS 65 (133)
T ss_dssp S-SHHHHHHHHH-TSEEEEESSS--SH-----------HHHHHHHTTESEEEESTTS------TBSHHHHHHHTT-SEEE
T ss_pred cCCHHHHHHHHC-CceEEEeCCC--CH-----------HHHHHHhCCCeEEEEcCCC------CcCHHHHhccceeEEEE
Confidence 334455566666 6677777721 11 1355677889999876541 36778888775444554
Q ss_pred EcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 027408 126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 205 (223)
Q Consensus 126 n~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~ 205 (223)
..+.|- |.-++..+ .+..|.-+ - -|.....+.-++ +++|.++.+++...+++||.+|++|++
T Consensus 66 ~~~~G~--d~id~~~a-~~~gI~V~--n----~~g~~~~aVAE~---------a~~T~e~~~~~~~~~~~ni~~~l~g~~ 127 (133)
T PF00389_consen 66 TAGAGV--DNIDLEAA-KERGIPVT--N----VPGYNAEAVAEH---------AGYTDEARERMAEIAAENIERFLNGEP 127 (133)
T ss_dssp ESSSSC--TTB-HHHH-HHTTSEEE--E-----TTTTHHHHHHH---------HTGBHHHHHHHHHHHHHHHHHHHTTST
T ss_pred Eccccc--CcccHHHH-hhCeEEEE--E----eCCcCCcchhcc---------chhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444433 55444444 44444311 1 121100000000 189999999999999999999999987
Q ss_pred CCCcceec
Q 027408 206 FPVQNYIV 213 (223)
Q Consensus 206 ~~~~n~~~ 213 (223)
+ .|.||
T Consensus 128 ~--~n~VN 133 (133)
T PF00389_consen 128 P--ENVVN 133 (133)
T ss_dssp ---TTBSS
T ss_pred C--CCCCC
Confidence 5 55543
No 322
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=97.09 E-value=0.0043 Score=56.27 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=52.3
Q ss_pred CCCCCEEEEEcc---cHHHHHHHHHHccC-CCeEEEEcCCCC-C-hhH---HHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408 33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM-D-PQL---EKETG--AKFEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 33 ~l~g~~igIiG~---G~iG~~iA~~l~~~-G~~V~~~d~~~~-~-~~~---~~~~g--~~~~~~l~e~l~~aDvVv~~~ 100 (223)
.+.|+||++||- +++..+++..+..+ |++|.++.|..- . .+. ++..| +...+++++.++++|+|....
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 488999999997 59999999998876 999999988642 2 222 12224 445689999999999998744
No 323
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.08 E-value=0.0022 Score=54.91 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=45.7
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhhCCeecCCHHhh-cccCCEEEEcCCC
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKFEEDLDTM-LPKCDIVVVNTPL 102 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~-l~~aDvVv~~~p~ 102 (223)
++++.|+|.|..+++++..|...|+ +|.+++|+.... +.++.++.... +++ ...+|+||.|+|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCcc
Confidence 5789999999999999999999998 499999986322 23333332211 111 2458999999983
No 324
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.08 E-value=0.00075 Score=52.06 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=45.1
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHh-------h--CCeecCCHHhhcccCCEEEEcCC
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------T--GAKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~-------~--g~~~~~~l~e~l~~aDvVv~~~p 101 (223)
+||+|||. |.+|..+|..+...+ -++..+|++....+ .+.+ . .........+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 58999999 999999999997544 57999998742111 1111 1 11222355677889999999874
No 325
>PRK05086 malate dehydrogenase; Provisional
Probab=97.07 E-value=0.0035 Score=54.72 Aligned_cols=95 Identities=25% Similarity=0.310 Sum_probs=57.8
Q ss_pred CEEEEEcc-cHHHHHHHHHHc---cCCCeEEEEcCCCCCh----hHHH-h--hCCee--cCCHHhhcccCCEEEEcCCCC
Q 027408 37 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDP----QLEK-E--TGAKF--EEDLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~---~~G~~V~~~d~~~~~~----~~~~-~--~g~~~--~~~l~e~l~~aDvVv~~~p~~ 103 (223)
++|+|||. |.+|++++..+. ..+.++..+|+++... +... . ..+.. .+++.+.++++|+|++|.-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 68999999 999999998773 3455789999865321 1111 1 01111 245567788999999987531
Q ss_pred hh---hh-hc------ccHHHHhcC---CCCcEEEEcCCCC
Q 027408 104 EK---TR-GM------FDKDRIAKM---KKGVLIVNNARGA 131 (223)
Q Consensus 104 ~~---t~-~~------i~~~~~~~m---k~ga~ivn~srg~ 131 (223)
.. ++ .+ +-.+..+.| .+.+++++++..-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 11 00 01 123333333 4678888887654
No 326
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.0045 Score=56.45 Aligned_cols=124 Identities=17% Similarity=0.236 Sum_probs=76.9
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH----HHhhCCeec--CCHHhhcccCCEEEEcCCCChhhh
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL----EKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~----~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~ 107 (223)
+.+++|.|+|+|.-|.++|+.|...|.+|+++|.++..... ....++... ....+...++|+|+..-- -+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG-i~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG-IPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC-CCCCC
Confidence 45999999999999999999999999999999976644211 112333321 112256778999987632 22222
Q ss_pred h-----------cccH-HHHhcC-CCCcEE-EEcCCCCccCHHHHHHHHHh--------CCccEEEeeCCCCC
Q 027408 108 G-----------MFDK-DRIAKM-KKGVLI-VNNARGAIMDTQAVVDACSS--------GHIAGYSGDVWNPQ 158 (223)
Q Consensus 108 ~-----------~i~~-~~~~~m-k~ga~i-vn~srg~~vd~~al~~~L~~--------g~i~~a~lDv~~~e 158 (223)
. ++.+ +++-+. ++-.+| |.-+.|+--...-+...|++ |.|...++|+..++
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 2 1222 233332 122344 55556776666666666665 66777888888763
No 327
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.06 E-value=0.0019 Score=59.43 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=70.3
Q ss_pred cccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhhCCeecC-CHHhhcccCCEEEEcCC--
Q 027408 30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEE-DLDTMLPKCDIVVVNTP-- 101 (223)
Q Consensus 30 ~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~-~l~e~l~~aDvVv~~~p-- 101 (223)
.+..+.+++|.|+|.|.+|.++|+.|+..|++|.++|+..... +..++.|+.... .-.+....+|+|+++.-
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWR 89 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcC
Confidence 4456889999999999999999999999999999999654211 123344665431 11123456999998763
Q ss_pred -CChhhh-----h--cccH-HHH-hcCCC----CcEEEEcCCCCccCHHHHHHHHHh
Q 027408 102 -LTEKTR-----G--MFDK-DRI-AKMKK----GVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 102 -~~~~t~-----~--~i~~-~~~-~~mk~----ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
.++... + ++.+ +.+ ..+.+ ..+-|--+.|+.-...-+...|+.
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 333211 1 1222 222 23322 134455556776666666666765
No 328
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.05 E-value=0.0066 Score=55.23 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=69.4
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-h-h---HHHhhCCee--cCCHHhhcccCCEEEEcCCCChh
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P-Q---LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~-~---~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
.+.+|++.|+|.|.+|..+|+.|...|++|+++|++... . + .....++.. ....++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 468999999999999999999999999999999986421 1 1 112234432 23344566789999887643332
Q ss_pred hhhcc----------c-HHHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 106 TRGMF----------D-KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 106 t~~~i----------~-~~~~~~-mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
...+. . .+.+.. .+...+-|--+.|+.-..+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 22110 0 111222 232233355567887777777777765
No 329
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=97.05 E-value=0.0057 Score=50.62 Aligned_cols=93 Identities=26% Similarity=0.250 Sum_probs=62.2
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-c----CCHHhh-----cccCCEEEEcCCCC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-E----EDLDTM-----LPKCDIVVVNTPLT 103 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~----~~l~e~-----l~~aDvVv~~~p~~ 103 (223)
..|.+|.|.|.|.+|+.+++.++..|.+|++.+++....+..+..+... + .+..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 4688999999999999999999999999999988754444444444321 1 111111 13578888777621
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
......++.|+++..+++++...
T Consensus 213 -----~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 213 -----ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred -----HHHHHHHHhcccCCEEEEEccCC
Confidence 12255667788888888776543
No 330
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.05 E-value=0.00051 Score=61.40 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=42.9
Q ss_pred EEEEcccHHHHHHHHHHccCC-C-eEEEEcCCCCChhHH-Hh---hCCee-------cCCHHhhcccCCEEEEcCC
Q 027408 39 VGTVGCGRIGKLLLQRLKPFN-C-NLLYHDRVKMDPQLE-KE---TGAKF-------EEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 39 igIiG~G~iG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~-~~---~g~~~-------~~~l~e~l~~aDvVv~~~p 101 (223)
|+|+|.|.+|+.+++.|...+ . +|++.||+....+.. ++ ..+.. ..+++++++++|+|+.|+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g 76 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAG 76 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCc
Confidence 789999999999999998765 4 899999976332222 11 11111 1246788999999999998
No 331
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.03 E-value=0.0077 Score=54.74 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-h---hHHHhhCCeec--CCHHhhccc-CCEEEEcC--C-C
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P---QLEKETGAKFE--EDLDTMLPK-CDIVVVNT--P-L 102 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~---~~~~~~g~~~~--~~l~e~l~~-aDvVv~~~--p-~ 102 (223)
++.|+++.|+|.|.+|.++|+.|...|++|.++|++... . +.....|+... ....+++.. +|+||... | .
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367999999999999999999999999999999975422 1 12233455432 223344554 89887765 2 2
Q ss_pred Chhh-------hhcccHH-HHhcCCC-CcEEEEcCCCCccCHHHHHHHHHhC
Q 027408 103 TEKT-------RGMFDKD-RIAKMKK-GVLIVNNARGAIMDTQAVVDACSSG 145 (223)
Q Consensus 103 ~~~t-------~~~i~~~-~~~~mk~-ga~ivn~srg~~vd~~al~~~L~~g 145 (223)
+|.. ..++.+. .+..+.+ ..+-|--+.|+--...-+...|+..
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 2211 1122222 2223322 3444666678877777777777653
No 332
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.00 E-value=0.0029 Score=52.56 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=60.0
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHhhCCeec---CCHHhhcccCCEEEEcCCCCh
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKFE---EDLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~~---~~l~e~l~~aDvVv~~~p~~~ 104 (223)
...++|++|.|||.|.+|..=++.|..+|++|+++.+... ++. .....+... -.. +.+..+++|+.|+.
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~-~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaATd--- 94 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS-KEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIATD--- 94 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC-HHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECCC---
Confidence 3467899999999999999989999999999999998642 222 111122211 122 34578999988886
Q ss_pred hhhhcccHHHHhcCCCCcEEEEc
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~ 127 (223)
...+|+......+.-.+++|+
T Consensus 95 --D~~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 95 --DEKLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred --CHHHHHHHHHHHHHcCCeEEE
Confidence 233455555555554455554
No 333
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=97.00 E-value=0.0058 Score=53.80 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCC-CC-hhH-------HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVK-MD-PQL-------EKETG--AKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~-~~-~~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~ 99 (223)
.+.|.+|++||-+ ++.++++..+..+|++|.++.|.. .. .+. ++..| +...+++++.++++|+|...
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 5889999999975 799999999999999999998754 11 111 12234 44568999999999999886
Q ss_pred CC----C-Ch---h-----hhhcccHHHHhcC-CCCcEEEEcC
Q 027408 100 TP----L-TE---K-----TRGMFDKDRIAKM-KKGVLIVNNA 128 (223)
Q Consensus 100 ~p----~-~~---~-----t~~~i~~~~~~~m-k~ga~ivn~s 128 (223)
.= . .+ + ...-++++.++.. +++++|..+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 41 0 00 0 1223566666664 5667666653
No 334
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.99 E-value=0.0035 Score=54.51 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=62.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-C----CH---Hhhcc--cCCEEEEcCCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----DL---DTMLP--KCDIVVVNTPLT 103 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~----~l---~e~l~--~aDvVv~~~p~~ 103 (223)
.|.+|.|+|.|.+|...++.++.+|.+ |++.+++....+.++++|+..+ . +. .++.. ..|+|+-++...
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 589999999999999999999999999 9999887655556666675321 1 11 12222 478888776621
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
. .....+..++++..++.++.
T Consensus 243 ~-----~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 243 A-----ARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred H-----HHHHHHHHhhcCCEEEEEcC
Confidence 1 12455677888888877764
No 335
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.98 E-value=0.0022 Score=58.75 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=71.3
Q ss_pred CCCCEEEEEcccHHHHH-HHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeec-CCHHhhcccCCEEEEcC--C-CChhhh
Q 027408 34 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFE-EDLDTMLPKCDIVVVNT--P-LTEKTR 107 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~-~~l~e~l~~aDvVv~~~--p-~~~~t~ 107 (223)
.++++|.|+|+|..|.+ +|+.|+..|++|.++|...... +..++.|+... ....+.+.++|+||..- | .+|...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 7999999999999999764321 12334466432 22335567899988753 2 223221
Q ss_pred -------hcccHH-HHhc-CCC-CcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408 108 -------GMFDKD-RIAK-MKK-GVLIVNNARGAIMDTQAVVDACSSGH 146 (223)
Q Consensus 108 -------~~i~~~-~~~~-mk~-ga~ivn~srg~~vd~~al~~~L~~g~ 146 (223)
.++.+. .+.. +++ ..+-|--+.|+.-...-+.+.|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 123332 3233 333 24446666788777777777776544
No 336
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.96 E-value=0.0052 Score=55.53 Aligned_cols=89 Identities=25% Similarity=0.315 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCC
Q 027408 33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 33 ~l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~ 102 (223)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||...... ... .....++++.++++|+|+++++-
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~~--~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VKG--LPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hhh--cccCCCHHHHHhCCCEEEEecCC
Confidence 589999999996 44678899999999999999999643222 222 22246889999999999999973
Q ss_pred ChhhhhcccHHHH-hcCCCCcEEEEc
Q 027408 103 TEKTRGMFDKDRI-AKMKKGVLIVNN 127 (223)
Q Consensus 103 ~~~t~~~i~~~~~-~~mk~ga~ivn~ 127 (223)
. +.+. ++-+.+ +.|+ ..+++|.
T Consensus 387 ~-~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 D-EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred H-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 2 2222 333434 3454 4577764
No 337
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.96 E-value=0.0034 Score=56.01 Aligned_cols=68 Identities=25% Similarity=0.405 Sum_probs=53.2
Q ss_pred CCCCEEEEEccc----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCC
Q 027408 34 LEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 34 l~g~~igIiG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p 101 (223)
|.||+|||.|+- .-...++++|+..|.+|.+|||...........++...+++++++++||++++++.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence 899999999962 45678899999999999999985422211111136778999999999999999886
No 338
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.95 E-value=0.0035 Score=50.43 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=48.5
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----hhCCeecCCHHhhcccCCEEEEcCC
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----ETGAKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----~~g~~~~~~l~e~l~~aDvVv~~~p 101 (223)
+||+|||. |.+|+.+++.+...|++|+++-|++......+ +..+...+++.+.+...|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 68999996 99999999999999999999998863322211 1223223455578889999998865
No 339
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.95 E-value=0.0032 Score=55.74 Aligned_cols=92 Identities=23% Similarity=0.253 Sum_probs=66.8
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-hCCeecCCH-H--------hhc--ccCCEEEEcC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFEEDL-D--------TML--PKCDIVVVNT 100 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~~~l-~--------e~l--~~aDvVv~~~ 100 (223)
..+.++.|+|.|.||...+..++.+|. +|++.|+++...+.+++ .+.....+. + ++- ..+|+++-|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 344499999999999999999999997 58888998877777777 454432221 1 222 2499999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408 101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 101 p~~~~t~~~i~~~~~~~mk~ga~ivn~srg 130 (223)
. ++. .-.+.++..+++..++.++-.
T Consensus 247 G-~~~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 247 G-SPP----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred C-CHH----HHHHHHHHhcCCCEEEEEecc
Confidence 8 222 226778888999888888754
No 340
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.94 E-value=0.0031 Score=57.85 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=61.8
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHhhCCee--cCCHHhhcccCCEEEEcCCCChh
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
..+|+|++|.|||.|.++..=++.|..+|++|.++.+... .+. .....+.. -.-.++.++.+++|+.++...+
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~-~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~- 84 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFI-PQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA- 84 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC-HHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH-
Confidence 3579999999999999999999999999999999988542 222 11112211 1112345678999888876332
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
+|.+.....+...+++|++
T Consensus 85 ----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 ----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred ----HhHHHHHHHHHcCcEEEEC
Confidence 4555555555555666664
No 341
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.93 E-value=0.0068 Score=53.62 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=62.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeec---C---CHHhhcccCCEEEEcCCCChhhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---E---DLDTMLPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~---~l~e~l~~aDvVv~~~p~~~~t~ 107 (223)
.|++|.|.|.|.+|...++.++.+|.+|++.+.+... .+.++++|+..+ . .+.+.....|+|+-++.. +.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~~- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VHA- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HHH-
Confidence 6899999999999999999999999998887765422 334456676322 1 122333457999887752 111
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q 027408 108 GMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~sr 129 (223)
..+.++.++++..++.++.
T Consensus 261 ---~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 ---LGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ---HHHHHHHhcCCcEEEEeCC
Confidence 2456788899888888764
No 342
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.92 E-value=0.0028 Score=53.30 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=57.2
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-----------------------HHHhhC----Cee-
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKETG----AKF- 82 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~g----~~~- 82 (223)
..|.+++|.|+|+|.+|..+|+.|...|. ++.++|+...... ...+.+ +..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 46899999999999999999999999887 5888886532110 000111 111
Q ss_pred ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117 (223)
Q Consensus 83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~ 117 (223)
. .+.+++++++|+|+.++ .+.+++..+++...+.
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA 138 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence 1 23556788899888776 4566777776665554
No 343
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.90 E-value=0.0028 Score=58.69 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=48.0
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhh--CCeec--CCHHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET--GAKFE--EDLDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~--g~~~~--~~l~e~l~~aDvVv~~ 99 (223)
++.+++|.|+|+|..|.++|+.|+..|.+|.++|...... +..+.. ++... ....+.+.++|+|+..
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 3678999999999999999999999999999999754221 112222 33321 1234556789999886
No 344
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.88 E-value=0.0027 Score=56.05 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=57.5
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh---------------------hH----HHhhC--C--e
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP---------------------QL----EKETG--A--K 81 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~---------------------~~----~~~~g--~--~ 81 (223)
..|..++|.|||+|.+|..+|+.|...|. ++.++|...... +. .++.+ + .
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999998 799999753100 00 01111 1 1
Q ss_pred e------cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408 82 F------EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117 (223)
Q Consensus 82 ~------~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~ 117 (223)
. ..+..++++++|+|+.++- +..++.++++...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~ 140 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQKY 140 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHh
Confidence 1 1234567888898877754 566777776655543
No 345
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=96.87 E-value=0.0097 Score=51.94 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=53.1
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChh-------HHHhhC-CeecCCHHhhcccCCEEEEcC
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LEKETG-AKFEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-------~~~~~g-~~~~~~l~e~l~~aDvVv~~~ 100 (223)
.+.|++|++||- +++.++++..+..+|++|.+..|.....+ .++..| +...+++++.++++|+|..-+
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 489999999996 79999999999999999999998652211 112223 455679999999999998843
No 346
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.87 E-value=0.0062 Score=53.49 Aligned_cols=111 Identities=16% Similarity=0.252 Sum_probs=65.9
Q ss_pred CEEEEEcccHHHHHHHHHHcc--------CCCeEE-EEcCCCC--C-h-----hH---HHhhCC--eecC--CHHhhc-c
Q 027408 37 KTVGTVGCGRIGKLLLQRLKP--------FNCNLL-YHDRVKM--D-P-----QL---EKETGA--KFEE--DLDTML-P 91 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~--------~G~~V~-~~d~~~~--~-~-----~~---~~~~g~--~~~~--~l~e~l-~ 91 (223)
++|+|+|+|++|+.+++.+.. .+.+|. +.|++.. . . +. .....+ .... ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 379999999999999999865 456644 4555421 0 0 10 111001 1112 566664 4
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCcc
Q 027408 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 148 (223)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~ 148 (223)
++|+|+-|+|....-... -.-..+.++.|..+|-.+.|.+. .-..|.+..++++..
T Consensus 81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 689999999843211111 12335567789999988887774 455566666655443
No 347
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.86 E-value=0.0024 Score=56.98 Aligned_cols=63 Identities=21% Similarity=0.419 Sum_probs=44.7
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhhCC-eecC---CHHhhcccCCEEEE
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA-KFEE---DLDTMLPKCDIVVV 98 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~-~~~~---~l~e~l~~aDvVv~ 98 (223)
.++|||||.|..|+.++..++.+|++|+++|+++..+... ...-+ ..+. .+.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4789999999999999999999999999999875432211 11001 0122 35567788998865
No 348
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.86 E-value=0.0074 Score=54.85 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=58.6
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--CCeec----CCHHh----hcccCCEEEEcCCCC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFE----EDLDT----MLPKCDIVVVNTPLT 103 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~~~----~~l~e----~l~~aDvVv~~~p~~ 103 (223)
+..+++.|+|+|.+|+.+++.|...|.+|+++|+++...+..... ++..+ .+.+. -+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 567899999999999999999999999999999876433322221 32211 22222 246899999888855
Q ss_pred hhhhhcccHHHHhcCCCCcEEE
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIV 125 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~iv 125 (223)
..+ ++.....+.+.+..+++
T Consensus 309 ~~n--~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 309 EAN--ILSSLLAKRLGAKKVIA 328 (453)
T ss_pred HHH--HHHHHHHHHhCCCeEEE
Confidence 433 33333444455544444
No 349
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.85 E-value=0.0039 Score=53.89 Aligned_cols=89 Identities=12% Similarity=0.007 Sum_probs=58.2
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
..|+++.|+|.|.+|...++.++.+|++ |.+++++....+.+....+ .+.-++.-...|+|+-++... . .-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~-~----~~~ 215 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDP-S----LID 215 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCH-H----HHH
Confidence 3578899999999999999999999997 5566765432222222211 211111223579998887621 1 125
Q ss_pred HHHhcCCCCcEEEEcCC
Q 027408 113 DRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~sr 129 (223)
..++.++++..++.++-
T Consensus 216 ~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 216 TLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHhhhcCcEEEEEee
Confidence 66788899888887753
No 350
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.83 E-value=0.0019 Score=51.09 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=48.1
Q ss_pred EEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-------cCCHHhhcccCCEEEEcCCCChh
Q 027408 39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 39 igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p~~~~ 105 (223)
|.|+|. |.+|+.+++.|...|.+|.++.|++...+. ..+++. .+++.+.++.+|.|+.+++....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 679995 999999999999999999999997643322 223321 13456778899999999874333
No 351
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.83 E-value=0.0042 Score=51.19 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=33.4
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 68 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~ 68 (223)
..|..++|+|||+|.+|..+|+.|...|.. +.++|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468999999999999999999999988985 8888876
No 352
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.83 E-value=0.011 Score=52.49 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=50.6
Q ss_pred CCCCCEEEEEccc--------HHHHHHHHHHccCCCeEEEEcCCCC--ChhH-------HHhhCC--eecCCHHhhcccC
Q 027408 33 DLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETGA--KFEEDLDTMLPKC 93 (223)
Q Consensus 33 ~l~g~~igIiG~G--------~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g~--~~~~~l~e~l~~a 93 (223)
.|.|+||+|+|.| ++.++++..+..+|++|.+..|... .++. +++.|. ...+++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999843 5668888899999999999998642 2222 123343 4568999999999
Q ss_pred CEEEEcC
Q 027408 94 DIVVVNT 100 (223)
Q Consensus 94 DvVv~~~ 100 (223)
|+|....
T Consensus 247 Dvvyt~~ 253 (357)
T TIGR03316 247 DIVYPKS 253 (357)
T ss_pred CEEEECC
Confidence 9998863
No 353
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.81 E-value=0.014 Score=53.43 Aligned_cols=110 Identities=12% Similarity=0.117 Sum_probs=73.6
Q ss_pred CCCCEEEEEcc----cHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhh
Q 027408 34 LEGKTVGTVGC----GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 34 l~g~~igIiG~----G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~ 107 (223)
++=++|+|||. |++|..+.+.+...|+ +|+.++|... .-.|+..+.+++++-...|++++++|.. .+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-----~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~ 78 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-----EILGVKAYPSVLEIPDPVDLAVIVVPAK-YVP 78 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-----ccCCccccCCHHHCCCCCCEEEEecCHH-HHH
Confidence 56789999998 8899999999998887 6888887542 2346777789999888899999999922 222
Q ss_pred hcccHHHHhcCCCCcE-EEEcCCCCc-----cCHHHHHHHHHhCCccEEE
Q 027408 108 GMFDKDRIAKMKKGVL-IVNNARGAI-----MDTQAVVDACSSGHIAGYS 151 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~-ivn~srg~~-----vd~~al~~~L~~g~i~~a~ 151 (223)
.++ ++..+ .+-..+ ++..+-++. ..+++|.+..+++.++-.+
T Consensus 79 ~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 79 QVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred HHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 222 33333 333333 333322232 2356788888887766443
No 354
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.80 E-value=0.0044 Score=54.42 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=60.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecC--------CHHhhcc------cCC----EE
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--------DLDTMLP------KCD----IV 96 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~--------~l~e~l~------~aD----vV 96 (223)
.|.+|.|.|.|.+|...++.++..|.+|++.++++...+.++++|+..+- ++.+.+. ..| +|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 48999999999999999999999999999998876555566666653211 1111111 233 66
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 97 v~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
+-++.. +. .....++.++++..++.++.
T Consensus 246 ~d~~g~-~~----~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 246 FECSGS-KP----GQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EECCCC-hH----HHHHHHHHHhcCCeEEEECc
Confidence 666652 11 11445677888888887765
No 355
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=96.79 E-value=0.0064 Score=54.23 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=61.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC-ChhHHHhhCCeec---CC---HHhhcccCCEEEEcCCCChhhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~---~~---l~e~l~~aDvVv~~~p~~~~t~ 107 (223)
.|++|.|.|.|.+|...++.++.+|.+|++.+++.. ..+.++++|+... .+ +.+.....|+|+-++....
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~--- 254 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEH--- 254 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHH---
Confidence 589999999999999999999999999988887542 2345556666422 11 2222334788888765211
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q 027408 108 GMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 108 ~~i~~~~~~~mk~ga~ivn~sr 129 (223)
.-.+.++.++++..++.++-
T Consensus 255 --~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 255 --ALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred --HHHHHHHhhcCCCEEEEEcc
Confidence 11455677788888877753
No 356
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.79 E-value=0.002 Score=55.77 Aligned_cols=54 Identities=22% Similarity=0.160 Sum_probs=46.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCCHHh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDT 88 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~e 88 (223)
.|++++|+|+|.+|.++++.+++.|. +|+++|.++..-+.++++|+..+-+..+
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d 246 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD 246 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh
Confidence 68999999999999999999999997 6999999987777888888765545443
No 357
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=96.79 E-value=0.012 Score=53.04 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=51.5
Q ss_pred CCCCEEEEEcc-----c---HHHHHHHHHHccCCCeEEEEcCCCC--ChhH-------HHhhC--CeecCCHHhhcccCC
Q 027408 34 LEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKCD 94 (223)
Q Consensus 34 l~g~~igIiG~-----G---~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g--~~~~~~l~e~l~~aD 94 (223)
+.|++|+|+|- | ++.++++..+..+|++|.++.|..- .++. ++..| +...++++++++++|
T Consensus 185 l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aD 264 (395)
T PRK07200 185 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDAD 264 (395)
T ss_pred cCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCC
Confidence 88999999985 5 6779999999999999999998631 2221 22234 445689999999999
Q ss_pred EEEEcC
Q 027408 95 IVVVNT 100 (223)
Q Consensus 95 vVv~~~ 100 (223)
+|..-.
T Consensus 265 vVYtd~ 270 (395)
T PRK07200 265 IVYPKS 270 (395)
T ss_pred EEEEcC
Confidence 998763
No 358
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0019 Score=54.22 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=67.1
Q ss_pred CEEEEEcccHHHHHHHHHHccCCC----eEEEEcCCCCChhH-HHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~-~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~ 111 (223)
+++|+||.|.|..++++.+...|. +++.+-++...... ++..|+..+..-.+.++.+|++++++. |.....+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK--p~~i~~vl 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK--PQVIESVL 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec--chhHHHHh
Confidence 468999999999999999988775 57777774444444 667788755555888899999999986 33222222
Q ss_pred HHHHhcCCCCcEEEEcCCCCccC
Q 027408 112 KDRIAKMKKGVLIVNNARGAIMD 134 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~srg~~vd 134 (223)
.+.-.....+.+++.+.-|..++
T Consensus 79 s~~~~~~~~~~iivS~aaG~tl~ 101 (267)
T KOG3124|consen 79 SEIKPKVSKGKIIVSVAAGKTLS 101 (267)
T ss_pred hcCccccccceEEEEEeecccHH
Confidence 22222244567899998887553
No 359
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.75 E-value=0.0031 Score=51.37 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=34.2
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 69 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~ 69 (223)
..|..++|.|+|+|.+|..+++.|...|.. +.++|...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 469999999999999999999999999985 88998753
No 360
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.74 E-value=0.0046 Score=53.60 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=43.1
Q ss_pred EEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhh-------C---CeecCCHHhhcccCCEEEEcCC
Q 027408 39 VGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-------G---AKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 39 igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~-------g---~~~~~~l~e~l~~aDvVv~~~p 101 (223)
|+|||.|.+|..+|..+...| .++..+|++....+ ...++ . +....+ .+.+++||+|+++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag 75 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCC
Confidence 589999999999999998877 47999998653221 11111 0 111233 457889999999876
No 361
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.72 E-value=0.0042 Score=53.76 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=26.9
Q ss_pred EEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~ 68 (223)
+|.|+|+|.+|..+|+.|...|. ++.++|..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999998 47777753
No 362
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=96.70 E-value=0.009 Score=52.01 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=62.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec---CC---HHhhcccCCEEEEcCCCChhhhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~---l~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.|.++.|.|.|.+|..+++.++.+|.+|++.+++....+.+..+++..+ .+ .++.-...|+|+.+.+..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~----- 243 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS----- 243 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence 5789999999999999999999999999999887644555555554321 11 111224578888777632
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~sr 129 (223)
....+.++.++++..+++++.
T Consensus 244 ~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 244 HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred chHHHHHHHhcCCCEEEEEec
Confidence 112566777777777777754
No 363
>PLN02740 Alcohol dehydrogenase-like
Probab=96.70 E-value=0.0073 Score=53.79 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=61.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecC-------CHHhhc----c-cCCEEEEcCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTML----P-KCDIVVVNTP 101 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~e~l----~-~aDvVv~~~p 101 (223)
.|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+- ++.+.+ . ..|+|+-++.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G 277 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG 277 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 599999877666666777753211 122211 1 4788887775
Q ss_pred CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408 102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR 129 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr 129 (223)
.. . .-...+..++++ ..++.++-
T Consensus 278 ~~-~----~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 278 NV-E----VLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred Ch-H----HHHHHHHhhhcCCCEEEEEcc
Confidence 21 1 124556667675 66666653
No 364
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.70 E-value=0.0056 Score=54.26 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=62.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-C----CHHh----hcc-cCCEEEEcCCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E----DLDT----MLP-KCDIVVVNTPLT 103 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~----~l~e----~l~-~aDvVv~~~p~~ 103 (223)
.|.+|.|.|.|.+|...++.++..|. +|++.++++...+.++++|+..+ + ++.+ +.. ..|+|+-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 58899999999999999999999999 59999887656666677776321 1 1111 111 378888877521
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
+ .....++.++++..++.++-
T Consensus 271 ~-----~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 P-----ALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred H-----HHHHHHHHHhcCCEEEEEcc
Confidence 1 12455677888888877763
No 365
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.69 E-value=0.006 Score=53.49 Aligned_cols=68 Identities=25% Similarity=0.279 Sum_probs=46.1
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHh-------hCCeecCC---HHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKE-------TGAKFEED---LDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~-------~g~~~~~~---l~e~l~~aDvVv~~ 99 (223)
-+..+||+|+|. |.+|..+|..+...+ .++..+|+.. ....+.+ ..+...++ ..+.+++||+|+++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~-~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG-APGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC-CcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence 367779999999 999999999998544 5799999832 1111111 11221222 25788999999987
Q ss_pred CC
Q 027408 100 TP 101 (223)
Q Consensus 100 ~p 101 (223)
+-
T Consensus 84 aG 85 (321)
T PTZ00325 84 AG 85 (321)
T ss_pred CC
Confidence 65
No 366
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=96.68 E-value=0.012 Score=52.02 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcc---cHHHHHHHHHHc-cCCCeEEEEcCCCC--ChhH---HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408 33 DLEGKTVGTVGC---GRIGKLLLQRLK-PFNCNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 33 ~l~g~~igIiG~---G~iG~~iA~~l~-~~G~~V~~~d~~~~--~~~~---~~~~g--~~~~~~l~e~l~~aDvVv~~ 99 (223)
.+.|++|++||- +++..+++..+. .+|++|.+..|..- +.+. ++..| +...+++++.++++|+|...
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 589999999997 688999998776 44999999988642 2222 12233 44568999999999999874
No 367
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.68 E-value=0.0034 Score=45.01 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=44.0
Q ss_pred CCEEEEEcccHHHHHHHHHH-ccCCCe-EEEEcCCCCChhHHHhhCCeecCCHHhhccc--CCEEEEcCC
Q 027408 36 GKTVGTVGCGRIGKLLLQRL-KPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTP 101 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l-~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~--aDvVv~~~p 101 (223)
..++.|+|+|+.|++++... ...|+. +.++|.++.... ..-.++..+.+++++.+. .|+-++++|
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-~~i~gipV~~~~~~l~~~~~i~iaii~VP 71 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-KEIGGIPVYGSMDELEEFIEIDIAIITVP 71 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-SEETTEEEESSHHHHHHHCTTSEEEEES-
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-cEECCEEeeccHHHhhhhhCCCEEEEEcC
Confidence 34799999999999998555 345765 456676553221 122356655577777766 999999999
No 368
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.68 E-value=0.0056 Score=48.86 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=51.9
Q ss_pred EEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCCh------------------hH-HH---hh--CCee--------cC
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDP------------------QL-EK---ET--GAKF--------EE 84 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~------------------~~-~~---~~--g~~~--------~~ 84 (223)
+|+|+|+|.+|..+++.|...|.. +.++|...... +. .+ +. .++. ..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 589999999999999999988984 88888753100 00 00 11 1111 12
Q ss_pred CHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408 85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117 (223)
Q Consensus 85 ~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~ 117 (223)
+++++++++|+|+.| -.+.+++..++....+.
T Consensus 81 ~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 81 NLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred hHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 445778889999888 44667766665555554
No 369
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.66 E-value=0.0061 Score=55.27 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=52.1
Q ss_pred ccCCCCCEEEEEcc----------cHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEc
Q 027408 31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 31 ~~~l~g~~igIiG~----------G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~ 99 (223)
+.++.|++|+|+|+ ..-+..+++.|...| .+|.+|||.-...... ..+.....++++.+++||+|+++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~-~~~~~~~~~~~~~~~~ad~vvi~ 393 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKK-LDGLVTLVSLDEALATADVLVML 393 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhh-ccCceeeCCHHHHHhCCCEEEEC
Confidence 45689999999996 446788999999986 9999999963221110 01111236899999999999999
Q ss_pred CC
Q 027408 100 TP 101 (223)
Q Consensus 100 ~p 101 (223)
++
T Consensus 394 t~ 395 (415)
T PRK11064 394 VD 395 (415)
T ss_pred CC
Confidence 98
No 370
>PRK06153 hypothetical protein; Provisional
Probab=96.64 E-value=0.0041 Score=55.56 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~ 68 (223)
.|.+++|+|||+|.+|..++..|...|. ++..+|..
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 6899999999999999999999999887 58888764
No 371
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.63 E-value=0.013 Score=51.29 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=61.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcc
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i 110 (223)
.|.+|.|+|.|.+|...++.++. +| .+|+++++++...+.++..+... ..+++.+ ..|+|+-++... .+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~-~~~~~~ 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGR-GSQSAI 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCC-ccHHHH
Confidence 58999999999999999988875 54 67999998765555555444332 1222222 379999888631 011112
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 027408 111 DKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~sr 129 (223)
.+.++.++++..++.++-
T Consensus 240 -~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 240 -NQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -HHHHHhCcCCcEEEEEee
Confidence 567788999988887753
No 372
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.62 E-value=0.0053 Score=53.24 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=46.9
Q ss_pred CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-------cCCHHhhcccCCEEEEcCC
Q 027408 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p 101 (223)
++|.|.| .|.+|+.+++.|...|++|.+.+|+..........+++. ..++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4799999 599999999999999999999998753222212223321 2345677889999987654
No 373
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.61 E-value=0.023 Score=49.80 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=44.4
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCC---h----hHHHh-----hCCeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---P----QLEKE-----TGAKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~---~----~~~~~-----~g~~~~~~l~e~l~~aDvV 96 (223)
++|+|||. |.+|..+|..+...|. ++..+|..... . +.... ..+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999998876554 79999985321 1 11110 0112223456778999999
Q ss_pred EEcCC
Q 027408 97 VVNTP 101 (223)
Q Consensus 97 v~~~p 101 (223)
+++.-
T Consensus 83 vitaG 87 (322)
T cd01338 83 LLVGA 87 (322)
T ss_pred EEeCC
Confidence 99864
No 374
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.60 E-value=0.0079 Score=52.96 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=62.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCHH----hhcc--cCCEEEEcCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP--KCDIVVVNTPL 102 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~----e~l~--~aDvVv~~~p~ 102 (223)
.|++|.|.|.|.+|...++.++..|.+ |++.+++....+.++++|...+ .+.. ++.. ..|+|+-++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 589999999999999999999999985 9899887666666667765321 1111 1222 47888877652
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
+.+ + ...+..++++..++.++.
T Consensus 256 -~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 256 -PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -HHH---H-HHHHHHhccCCEEEEECC
Confidence 211 1 445677888888887764
No 375
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.59 E-value=0.0067 Score=55.82 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=67.4
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC-Chh---HHHhhCCee-cCCHHhhcccCCEEEEcC--C-CChh
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ---LEKETGAKF-EEDLDTMLPKCDIVVVNT--P-LTEK 105 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~---~~~~~g~~~-~~~l~e~l~~aDvVv~~~--p-~~~~ 105 (223)
+.|++|+|+|+|.-|.+.|+.|...|.+|+++|.... ... ..+..+... .....+.+.++|+||..- | .+|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5789999999999999999999999999999996432 111 111111111 112245567899988753 2 2222
Q ss_pred hh-------hcccHHHH--hc-CC-----CCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 106 TR-------GMFDKDRI--AK-MK-----KGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 106 t~-------~~i~~~~~--~~-mk-----~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
.. .++.+-.+ .. ++ +..+-|--+.|+.-...-+...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 11 13433332 32 32 1234466667877777777777765
No 376
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=96.57 E-value=0.0075 Score=52.10 Aligned_cols=92 Identities=25% Similarity=0.220 Sum_probs=62.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCee-c----CCHH--h--hcccCCEEEEcCCCCh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKF-E----EDLD--T--MLPKCDIVVVNTPLTE 104 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~-~----~~l~--e--~l~~aDvVv~~~p~~~ 104 (223)
.|.+|.|+|.|.+|+.+++.+++.|++ |++.+++....+...+.+... + .+.. . .-...|+++-+++..
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~- 237 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP- 237 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence 578999999999999999999999998 888887654444444455421 1 1111 1 113578888776521
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
....+.++.|+++..+++++...
T Consensus 238 ----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 238 ----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred ----HHHHHHHHHHhcCCEEEEEecCC
Confidence 12356677788888888876544
No 377
>PRK08223 hypothetical protein; Validated
Probab=96.57 E-value=0.01 Score=51.12 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=57.5
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-------------------HH----HhhC----Ce--
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-------------------LE----KETG----AK-- 81 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-------------------~~----~~~g----~~-- 81 (223)
..|..++|.|||+|.+|..+|+.|...|. ++.++|....... .+ .+.+ +.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999999999999999997 4778876431110 00 0111 11
Q ss_pred ----ecCCHHhhcccCCEEEEcCCCC-hhhhhcccHHHHhc
Q 027408 82 ----FEEDLDTMLPKCDIVVVNTPLT-EKTRGMFDKDRIAK 117 (223)
Q Consensus 82 ----~~~~l~e~l~~aDvVv~~~p~~-~~t~~~i~~~~~~~ 117 (223)
..++.+++++++|+|+-++..- -+++..+++...+.
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~ 143 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR 143 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc
Confidence 1245678888999998666431 25667776665554
No 378
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.57 E-value=0.01 Score=54.09 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHh--hCCeec--CCHHhhcccCCEEEEcCC---CC
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE--EDLDTMLPKCDIVVVNTP---LT 103 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~--~~l~e~l~~aDvVv~~~p---~~ 103 (223)
++.+++|.|+|.|.+|.++|+.|...|.+|.++|...... +..++ .|+... ...++.+.++|+||...- .+
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~ 81 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ 81 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence 3678999999999999999999999999999999765332 11122 255432 112344568999987642 22
Q ss_pred hhhhh-------ccc-HHHHhc-CC---CCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408 104 EKTRG-------MFD-KDRIAK-MK---KGVLIVNNARGAIMDTQAVVDACSSG 145 (223)
Q Consensus 104 ~~t~~-------~i~-~~~~~~-mk---~ga~ivn~srg~~vd~~al~~~L~~g 145 (223)
|.... ++. .+.+.. ++ ...+-|--+.|+.-...-+...|+..
T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 32211 222 223333 32 12344555667776666667777653
No 379
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.57 E-value=0.0097 Score=51.97 Aligned_cols=93 Identities=26% Similarity=0.283 Sum_probs=56.1
Q ss_pred EEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCCh---hHHHhh---CCeec---CCHHhhcccCCEEEEcCCCC--
Q 027408 38 TVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP---QLEKET---GAKFE---EDLDTMLPKCDIVVVNTPLT-- 103 (223)
Q Consensus 38 ~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~---~~~~~~---g~~~~---~~l~e~l~~aDvVv~~~p~~-- 103 (223)
||+|||. |.+|..+|..+...+. ++..+|+.+... ++.... .+..+ +++.+.+++||+|+++....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999998876554 799999865111 111100 11111 13467899999999986531
Q ss_pred h-hhhh-cc--c----H---HHHhcCCCCcEEEEcCCC
Q 027408 104 E-KTRG-MF--D----K---DRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 104 ~-~t~~-~i--~----~---~~~~~mk~ga~ivn~srg 130 (223)
| .++. ++ | + +.+....|++++++++..
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 1 1111 11 1 1 122333588999998754
No 380
>PLN02602 lactate dehydrogenase
Probab=96.55 E-value=0.0098 Score=52.75 Aligned_cols=92 Identities=16% Similarity=0.255 Sum_probs=56.3
Q ss_pred CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHh-------hC-Cee--cCCHHhhcccCCEEEEcCCCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE-------TG-AKF--EEDLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~-------~g-~~~--~~~l~e~l~~aDvVv~~~p~~ 103 (223)
+||+|||.|.+|..+|..+...+. ++..+|.+....+ .+.+ .+ ... ..+.++ +++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999998876665 6999998653221 1111 01 111 124444 88999999985431
Q ss_pred --h-hhh-hcc--c----H---HHHhcCCCCcEEEEcCC
Q 027408 104 --E-KTR-GMF--D----K---DRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 104 --~-~t~-~~i--~----~---~~~~~mk~ga~ivn~sr 129 (223)
| .++ .++ | + +.+....+.+++++++.
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 121 111 1 1 12233457888988874
No 381
>PLN00106 malate dehydrogenase
Probab=96.54 E-value=0.0062 Score=53.43 Aligned_cols=98 Identities=21% Similarity=0.234 Sum_probs=60.0
Q ss_pred CCCEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCCh---hHHH---hhCCee---cCCHHhhcccCCEEEEcCCC
Q 027408 35 EGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP---QLEK---ETGAKF---EEDLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 35 ~g~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~---~~~~---~~g~~~---~~~l~e~l~~aDvVv~~~p~ 102 (223)
..+||+|+|. |.+|..+|..+...+. ++..+|+..... ++.. ...+.. .+++.+.+++||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4569999999 9999999999975544 799999865211 1110 011111 23456889999999987642
Q ss_pred --Ch-hhhh-cc------cHHHH---hcCCCCcEEEEcCCCCc
Q 027408 103 --TE-KTRG-MF------DKDRI---AKMKKGVLIVNNARGAI 132 (223)
Q Consensus 103 --~~-~t~~-~i------~~~~~---~~mk~ga~ivn~srg~~ 132 (223)
.| .++. ++ -.+.. ....+.+++++++..--
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 21 1111 11 12222 33347889998876553
No 382
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.52 E-value=0.033 Score=48.03 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=74.4
Q ss_pred CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhh---------
Q 027408 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT--------- 106 (223)
Q Consensus 36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t--------- 106 (223)
|++++|||-=.--..+++.|...|++|..+........ . .++...+..++.++++|+|++-+|.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG-F--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc-c--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 68999999999899999999999999888875321111 1 15555666777799999999999965542
Q ss_pred -hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408 107 -RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (223)
Q Consensus 107 -~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~ 148 (223)
+-.++++.++.+++++++ -++ ++..++.++.++..+.
T Consensus 78 ~~~~l~~~~l~~~~~~~~~-~~G----~~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCTI-YVG----ISNPYLEQLAADAGVK 115 (287)
T ss_pred CCccccHHHHHhcCCCCEE-EEe----cCCHHHHHHHHHCCCe
Confidence 112568899999976653 333 4445566566777666
No 383
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=96.52 E-value=0.011 Score=50.85 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=62.5
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc--ccCCEEEEcCCCChhhhhccc
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l--~~aDvVv~~~p~~~~t~~~i~ 111 (223)
-.|.+|.|.|.|.+|+.+++.++..|.+|++.+.++...+.++++|+....+..+.. ...|+++-+..... ..
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~-----~~ 228 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPS-----GL 228 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChH-----HH
Confidence 358899999999999999999999999998888765555556667764332332222 34788888765211 12
Q ss_pred HHHHhcCCCCcEEEEcC
Q 027408 112 KDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~s 128 (223)
...++.++++..++..+
T Consensus 229 ~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 229 ELALRLVRPRGTVVLKS 245 (319)
T ss_pred HHHHHHhhcCCEEEEEc
Confidence 45567778877777643
No 384
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.52 E-value=0.009 Score=52.62 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=51.9
Q ss_pred CCEEEEEcc-cHHHHHHHHHHccCCC---eEEEEcCCCCChhHHHhhC--CeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408 36 GKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (223)
Q Consensus 36 g~~igIiG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~g--~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~ 109 (223)
+++|+|+|. |.+|+.+++.|...++ ++.+..+.....+.....+ +...+...+.+.++|+|++|+|...
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~----- 75 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSV----- 75 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHH-----
Confidence 468999995 9999999999988655 4455543321111111111 1111111123478999999998321
Q ss_pred ccHHHHh-cCCCCcEEEEcCC
Q 027408 110 FDKDRIA-KMKKGVLIVNNAR 129 (223)
Q Consensus 110 i~~~~~~-~mk~ga~ivn~sr 129 (223)
..+... .++.|+.+||.|.
T Consensus 76 -s~~~~~~~~~~G~~VIDlS~ 95 (334)
T PRK14874 76 -SKKYAPKAAAAGAVVIDNSS 95 (334)
T ss_pred -HHHHHHHHHhCCCEEEECCc
Confidence 223222 2357889998875
No 385
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.50 E-value=0.0097 Score=52.74 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecC-------CHHhhc-----ccCCEEEEcCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTML-----PKCDIVVVNTP 101 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~e~l-----~~aDvVv~~~p 101 (223)
.|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+...- ++.+.+ ...|+++-++.
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 264 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG 264 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 58999999999999999999999999 799998876556666667653211 111111 14688877765
Q ss_pred CChhhhhcccHHHHhcCCCC-cEEEEcC
Q 027408 102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA 128 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~s 128 (223)
. +. ...+.++.++++ ..++.++
T Consensus 265 ~-~~----~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 265 N-VN----VMRAALECCHKGWGESIIIG 287 (368)
T ss_pred C-HH----HHHHHHHHhhcCCCeEEEEe
Confidence 2 11 124556666664 5655554
No 386
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=96.50 E-value=0.012 Score=51.19 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc---ccCCEEEEcCCCChhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML---PKCDIVVVNTPLTEKT 106 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l---~~aDvVv~~~p~~~~t 106 (223)
.|.+|.|.|.|.+|..+++.++.+|.+|++.+++....+.+.++|+..+ .++.+.+ ...|+++-++...
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~--- 239 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNA--- 239 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCch---
Confidence 5889999999999999999999999999999887655555555664221 1121111 3467777654311
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
......+..++++..+++++.
T Consensus 240 --~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 240 --KAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred --HHHHHHHHHcccCCEEEEEec
Confidence 112455677777777777754
No 387
>PRK08328 hypothetical protein; Provisional
Probab=96.49 E-value=0.011 Score=49.25 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=32.9
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~ 68 (223)
..|.+++|.|+|+|.+|..+|+.|...|. ++.++|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999999997 48888854
No 388
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=96.49 E-value=0.012 Score=49.44 Aligned_cols=93 Identities=17% Similarity=0.090 Sum_probs=64.0
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhC-CeecCCHH-hh--cccCCEEEEcCCCChhhhh
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG-AKFEEDLD-TM--LPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g-~~~~~~l~-e~--l~~aDvVv~~~p~~~~t~~ 108 (223)
-.|.++.|.|.|.+|..+++.++..|.+ |++.+++....+.++++| ........ +. -...|+++.++....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~---- 171 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS---- 171 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----
Confidence 3688999999999999999999999998 988887654444555555 22111111 11 135898888765221
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
.....++.++++..+++++-.+
T Consensus 172 -~~~~~~~~l~~~g~~~~~g~~~ 193 (277)
T cd08255 172 -ALETALRLLRDRGRVVLVGWYG 193 (277)
T ss_pred -HHHHHHHHhcCCcEEEEEeccC
Confidence 2256778899999998886543
No 389
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.49 E-value=0.0057 Score=46.93 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=49.4
Q ss_pred EEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcC
Q 027408 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118 (223)
Q Consensus 39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~m 118 (223)
+-|+|.|.+++++++.++..|++|+++|+.+. .++.++-+ .+.+ ...+ .+.+ .+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e------------------~~~~~~~~-~~~~----~~~~--~~~~-~~ 54 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE------------------RFPEADEV-ICIP----PDDI--LEDL-EI 54 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC------------------C-TTSSEE-ECSH----HHHH--HHHC--S
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc------------------ccCCCCcc-EecC----hHHH--Hhcc-CC
Confidence 46899999999999999999999999998642 01233433 2322 1111 1111 35
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151 (223)
Q Consensus 119 k~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~ 151 (223)
.++..+| ++++.-.|...|..+|+. ...+.+
T Consensus 55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG 85 (136)
T PF13478_consen 55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIG 85 (136)
T ss_dssp -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence 5566655 788888888888888877 344344
No 390
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.46 E-value=0.01 Score=52.52 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=50.9
Q ss_pred CCCEEEEEcc-cHHHHHHHHHHccCCC---eEEEEcCCCCChhHHHhhCCe-ecCCH-HhhcccCCEEEEcCCCChhhhh
Q 027408 35 EGKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 35 ~g~~igIiG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~g~~-~~~~l-~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
...+|+|+|. |.+|+.+.+.|...++ ++.++.......+.....+.. .+.++ .+.+.++|+|++++|...
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~---- 81 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI---- 81 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH----
Confidence 4678999995 9999999999987554 343332211111111111111 11111 234578999999999332
Q ss_pred cccHHHHhc-CCCCcEEEEcC
Q 027408 109 MFDKDRIAK-MKKGVLIVNNA 128 (223)
Q Consensus 109 ~i~~~~~~~-mk~ga~ivn~s 128 (223)
..+.... .+.|+.+||.|
T Consensus 82 --s~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 82 --SKKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred --HHHHHHHHHhCCCEEEECC
Confidence 2233222 25688999998
No 391
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.44 E-value=0.011 Score=51.78 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=59.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec---C--CHHh---hcc--cCC-EEEEcCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE---E--DLDT---MLP--KCD-IVVVNTPL 102 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~---~--~l~e---~l~--~aD-vVv~~~p~ 102 (223)
.|++|.|.|.|.+|...++.++..|.+ |++.+++....+.++++|+..+ . +.++ +.. ..| +|+-++..
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~ 239 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGV 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCC
Confidence 589999999999999999999999997 6788876655555566665321 1 1122 221 346 66666652
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
+. .-.+.++.++++..++.++
T Consensus 240 -~~----~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 240 -PQ----TVELAIEIAGPRAQLALVG 260 (347)
T ss_pred -HH----HHHHHHHHhhcCCEEEEEc
Confidence 11 1255677888888887775
No 392
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=96.44 E-value=0.012 Score=51.01 Aligned_cols=89 Identities=21% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec------CCHHhhc-----ccCCEEEEcCCC
Q 027408 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL 102 (223)
Q Consensus 35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~e~l-----~~aDvVv~~~p~ 102 (223)
.|.+|.|.| .|.+|...++.++..|.+|++.+++....+..+++|+..+ ++..+.+ ...|+|+-++..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~ 217 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG 217 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence 588999999 5999999999999999999988876544555566665321 1232222 136888777651
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
. .+ ...++.++++..+++.+.
T Consensus 218 ----~-~~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 218 ----E-FS-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred ----H-HH-HHHHHHhCcCcEEEEecc
Confidence 1 12 567788888888888764
No 393
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.42 E-value=0.012 Score=51.96 Aligned_cols=107 Identities=17% Similarity=0.264 Sum_probs=62.5
Q ss_pred CEEEEEcccHHHHHHHHHHcc--------CC--CeEE-EEcCCCC-------ChhHH----HhhC-Cee--------cCC
Q 027408 37 KTVGTVGCGRIGKLLLQRLKP--------FN--CNLL-YHDRVKM-------DPQLE----KETG-AKF--------EED 85 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~--------~G--~~V~-~~d~~~~-------~~~~~----~~~g-~~~--------~~~ 85 (223)
.+|+|+|+|++|+.+++.+.. +| .+|. +.|++.. ..+.. +..+ ... ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999998865 56 4544 3354311 11110 0111 000 116
Q ss_pred HHhhc--ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408 86 LDTML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA 148 (223)
Q Consensus 86 l~e~l--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g~i~ 148 (223)
+++++ .++|+|+-+++..+ ...-..+.++.|..+|-...|.+ ...+.|.+..++....
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~-----a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~ 143 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKN-----AHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP 143 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHH-----HHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence 77877 47999998886221 22334455677888887776644 3555666665554443
No 394
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=96.42 E-value=0.013 Score=50.53 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=61.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-CC----H-HhhcccCCEEEEcCCCChhhhh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-ED----L-DTMLPKCDIVVVNTPLTEKTRG 108 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~----l-~e~l~~aDvVv~~~p~~~~t~~ 108 (223)
.|.+|.|.|.|.+|+.+++.++..|.+|++.+++....+...+.+.... .. . .......|+++-++...
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~----- 236 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSG----- 236 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcH-----
Confidence 5789999999999999999999999999999887644444444554211 11 1 11123578888776521
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 027408 109 MFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 109 ~i~~~~~~~mk~ga~ivn~sr 129 (223)
....+.+..++++..+++++.
T Consensus 237 ~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 237 AAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred HHHHHHHHhcccCCEEEEECC
Confidence 123566788888888888764
No 395
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.42 E-value=0.024 Score=51.60 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=62.0
Q ss_pred ccCCCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcC
Q 027408 31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 31 ~~~l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~ 100 (223)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+|||.-...+..+.++.... + ...++.+|+|++++
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~-~-~~~~~~ad~vvi~t 386 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPV-S-EVKSSHYDAIIVAV 386 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccc-h-hhhhcCCCEEEEcc
Confidence 34689999999996 456889999999999999999996322222222332211 1 22467899999998
Q ss_pred CCChhhhhcccHHHH-hcCCCCcEEEEcCCCCc
Q 027408 101 PLTEKTRGMFDKDRI-AKMKKGVLIVNNARGAI 132 (223)
Q Consensus 101 p~~~~t~~~i~~~~~-~~mk~ga~ivn~srg~~ 132 (223)
.-. +... ++-+.+ +.|+...+|+|. |+-+
T Consensus 387 ~h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 387 GHQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred CCH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 732 2222 333333 445544578874 5443
No 396
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.41 E-value=0.016 Score=50.46 Aligned_cols=48 Identities=29% Similarity=0.364 Sum_probs=42.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCee
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKF 82 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~ 82 (223)
.|.++.|+|+|.||-.....++++|+ +|++.|..+...+.++++|+..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~ 217 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV 217 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence 58999999999999999999999998 5999998887788888888754
No 397
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.41 E-value=0.016 Score=50.42 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=43.8
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCC--CChh-----HHH---hhC----CeecCCHHhhcccCCEEEEc
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVK--MDPQ-----LEK---ETG----AKFEEDLDTMLPKCDIVVVN 99 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~--~~~~-----~~~---~~g----~~~~~~l~e~l~~aDvVv~~ 99 (223)
++|+|+|. |.+|..++..+...|. +|..+|+.. ...+ ... ..+ +....+.+ .+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence 58999998 9999999999988776 499999843 1110 111 011 11223444 48999999999
Q ss_pred CC
Q 027408 100 TP 101 (223)
Q Consensus 100 ~p 101 (223)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 75
No 398
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.41 E-value=0.0056 Score=49.26 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=45.0
Q ss_pred CEEEEEcccHHHHHHHHHH--ccCCCeE-EEEcCCCCChh-HHHhhCCeecCCHHhhcc--cCCEEEEcCC
Q 027408 37 KTVGTVGCGRIGKLLLQRL--KPFNCNL-LYHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTP 101 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l--~~~G~~V-~~~d~~~~~~~-~~~~~g~~~~~~l~e~l~--~aDvVv~~~p 101 (223)
-++.|||.|++|++++..- +..|+++ .++|..+...- .....-+...+++++.++ +.|+.++|+|
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEcc
Confidence 3589999999999999754 4678985 48887652110 111122334567777776 6889999999
No 399
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.40 E-value=0.017 Score=50.80 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=24.2
Q ss_pred EEEEEcccHHHHHHHHHHccC----CCeEEEEcC
Q 027408 38 TVGTVGCGRIGKLLLQRLKPF----NCNLLYHDR 67 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~----G~~V~~~d~ 67 (223)
+|||+|+|+||+.+.+.+... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 589999999999999998754 367766653
No 400
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=96.40 E-value=0.0093 Score=46.36 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=54.5
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~ 113 (223)
..|++|++||+= +.+++.++..+.++.++|+++... ....+.......++++++||+|+++-. .-..+-+ ..
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~ 80 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNI--GEEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DD 80 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG----SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCC--CCCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HH
Confidence 579999999962 137788888899999999976221 111111134567889999999988764 1011111 56
Q ss_pred HHhcCCCCcEEEEcC
Q 027408 114 RIAKMKKGVLIVNNA 128 (223)
Q Consensus 114 ~~~~mk~ga~ivn~s 128 (223)
.++..++++.++=.+
T Consensus 81 iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 81 ILELARNAREVILYG 95 (147)
T ss_dssp HHHHTTTSSEEEEES
T ss_pred HHHhCccCCeEEEEe
Confidence 777777676666554
No 401
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.39 E-value=0.0059 Score=54.58 Aligned_cols=85 Identities=19% Similarity=0.188 Sum_probs=57.8
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------hH----HHhhC----Cee-
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QL----EKETG----AKF- 82 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~~----~~~~g----~~~- 82 (223)
..|.+++|.|+|+|.+|..+++.|...|. ++.++|...... +. ..+.+ +..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 46899999999999999999999999997 688888752100 00 00111 111
Q ss_pred ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117 (223)
Q Consensus 83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~ 117 (223)
. .+.+++++++|+|+.|+- +.+++.++++...+.
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~ 155 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT 155 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1 245578889998876664 566777777655544
No 402
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.013 Score=49.10 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 69 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~ 69 (223)
.+.++++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999996 9999999999999999999999875
No 403
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.39 E-value=0.013 Score=53.85 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=64.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-CCeec-CCHHhhcccCCEEEEcC--C-CChhhh--
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFE-EDLDTMLPKCDIVVVNT--P-LTEKTR-- 107 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-g~~~~-~~l~e~l~~aDvVv~~~--p-~~~~t~-- 107 (223)
.|++|+|+|+|.-|.+.|+.|+. |.+|+++|..........+. ..... ....+.+.++|+||..- | .+|...
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 58899999999999999999995 99999999543222211111 11111 11234567899887753 2 222211
Q ss_pred -----hcccHH-HH-hcCCCC-cEEEEcCCCCccCHHHHHHHHHh
Q 027408 108 -----GMFDKD-RI-AKMKKG-VLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 108 -----~~i~~~-~~-~~mk~g-a~ivn~srg~~vd~~al~~~L~~ 144 (223)
.++.+- .+ ..+++. .+-|--+.|+.-...-+...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123222 22 333332 34455556887777777777776
No 404
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.38 E-value=0.011 Score=53.88 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHh--hCCeecC--CHHhhcccCCEEEEcC--C-CChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFEE--DLDTMLPKCDIVVVNT--P-LTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~~--~l~e~l~~aDvVv~~~--p-~~~~ 105 (223)
.+-+|+|+|+|.+|.++|+.|...|++|.++|...... +..++ .|+.... ...+.+.++|+||..- | .+|.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence 45589999999999999999999999999999754221 11222 2554421 1234567899887753 2 2232
Q ss_pred hh-------hcccH-HHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 106 TR-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 106 t~-------~~i~~-~~~~~-mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
.. .++.+ +.+.. ++...+-|--+.|+--...-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 21 12222 23322 333344455667777766667777765
No 405
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.38 E-value=0.0066 Score=53.96 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=55.9
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------hH-HH---hh--C--Cee-
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QL-EK---ET--G--AKF- 82 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~~-~~---~~--g--~~~- 82 (223)
..|.+++|.|+|+|.+|..+|+.|...|. ++.++|...... +. ++ +. . +..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 46899999999999999999999999997 588888653100 00 00 11 1 111
Q ss_pred ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117 (223)
Q Consensus 83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~ 117 (223)
. ++..++++++|+|+.|+- +..++.+++....+.
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~ 142 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARL 142 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1 233567888998877764 556666666554443
No 406
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=96.36 E-value=0.029 Score=52.19 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=69.7
Q ss_pred ccCCCCCEEEEEcc---cHHHHHHHHHHccCC-CeEEEEcCCCC--ChhH---HHhhC--CeecCCHHhhcccCCEE--E
Q 027408 31 AYDLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIV--V 97 (223)
Q Consensus 31 ~~~l~g~~igIiG~---G~iG~~iA~~l~~~G-~~V~~~d~~~~--~~~~---~~~~g--~~~~~~l~e~l~~aDvV--v 97 (223)
+..+.|++|++||- +++.++++..+..+| ++|.+..|... +.+. +++.| +...++++++++++|+. .
T Consensus 169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw 248 (525)
T PRK13376 169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW 248 (525)
T ss_pred CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence 33589999999997 699999999999998 99999988542 2222 22334 44568999999999952 2
Q ss_pred E-------cCCCC--h---h--hhhcccHHHHhcCCCCcEEEEcC
Q 027408 98 V-------NTPLT--E---K--TRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 98 ~-------~~p~~--~---~--t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
. ..+.. + . -...++++.++.+++++++..+.
T Consensus 249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 2 22211 0 1 13457889999999999988876
No 407
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=96.33 E-value=0.023 Score=49.64 Aligned_cols=90 Identities=21% Similarity=0.248 Sum_probs=62.6
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCH----Hhhcc--cCCEEEEcCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL 102 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l~--~aDvVv~~~p~ 102 (223)
.|.+|.|.|.|.+|...++.++..|+ +|++.+++....+.+.++|+... .++ .++.. ..|+|+-+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 58899999999999999999999999 78888876544455555554321 111 22222 38999888752
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
.. ...+.++.++++..++.++.
T Consensus 252 ~~-----~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 252 QA-----TLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HH-----HHHHHHHhccCCCEEEEEcc
Confidence 11 12566778888888888764
No 408
>PRK05442 malate dehydrogenase; Provisional
Probab=96.33 E-value=0.053 Score=47.68 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=43.4
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCC---h----hHHHh-----hCCeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---P----QLEKE-----TGAKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~---~----~~~~~-----~g~~~~~~l~e~l~~aDvV 96 (223)
++|+|||. |.+|..+|..+...+. ++..+|.++.. . +.... .+.....+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998765433 79999985321 1 11111 0122234555788999999
Q ss_pred EEcCC
Q 027408 97 VVNTP 101 (223)
Q Consensus 97 v~~~p 101 (223)
+++.-
T Consensus 85 VitaG 89 (326)
T PRK05442 85 LLVGA 89 (326)
T ss_pred EEeCC
Confidence 99764
No 409
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=96.33 E-value=0.015 Score=51.36 Aligned_cols=91 Identities=19% Similarity=0.129 Sum_probs=58.8
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-C------CHHhhc-----ccCCEEEEcC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E------DLDTML-----PKCDIVVVNT 100 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~------~l~e~l-----~~aDvVv~~~ 100 (223)
..|.+|.|+|.|.+|...++.++.+|. +|++.+++....+.++++|+..+ . ++.+.+ ...|+|+-++
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~ 262 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence 358999999999999999999999999 69899886655555566665211 0 011111 2367777666
Q ss_pred CCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408 101 PLTEKTRGMFDKDRIAKMKKG-VLIVNNAR 129 (223)
Q Consensus 101 p~~~~t~~~i~~~~~~~mk~g-a~ivn~sr 129 (223)
.... .-.+.+..++++ ..++.++.
T Consensus 263 g~~~-----~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 263 GNAD-----LMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CChH-----HHHHHHHhcccCCCEEEEEcC
Confidence 4211 124556667664 66666553
No 410
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.33 E-value=0.012 Score=52.64 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=33.6
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~ 68 (223)
..|.+++|.|+|+|.+|..+++.|...|. ++.++|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 36899999999999999999999999998 58899875
No 411
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.32 E-value=0.023 Score=49.54 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=50.7
Q ss_pred EEEEEcc-cHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408 38 TVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (223)
Q Consensus 38 ~igIiG~-G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~ 115 (223)
+|+|+|. |-+|..+.+.|... .+++........ ... .+.+++++++|++++|+|.... .+..
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~~-~~~~~~~~~~D~vFlalp~~~s------~~~~ 66 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KDA-AERAKLLNAADVAILCLPDDAA------REAV 66 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cCc-CCHhHhhcCCCEEEECCCHHHH------HHHH
Confidence 7999995 99999999999876 456655432221 111 2456777899999999993322 2222
Q ss_pred hc-CCCCcEEEEcC
Q 027408 116 AK-MKKGVLIVNNA 128 (223)
Q Consensus 116 ~~-mk~ga~ivn~s 128 (223)
.. ...|+.+||.|
T Consensus 67 ~~~~~~g~~VIDlS 80 (310)
T TIGR01851 67 SLVDNPNTCIIDAS 80 (310)
T ss_pred HHHHhCCCEEEECC
Confidence 22 24688899988
No 412
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=96.32 E-value=0.018 Score=50.83 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=58.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecC-------CHHhhc----c-cCCEEEEcCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTML----P-KCDIVVVNTP 101 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~e~l----~-~aDvVv~~~p 101 (223)
.|.+|.|.|.|.+|...++.++.+|+ +|++.+++....+.++++|+..+. ++.+.+ . ..|+++-++.
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G 266 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG 266 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 58999999999999999999999999 799998876556666666653211 111111 1 3677776654
Q ss_pred CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408 102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR 129 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr 129 (223)
... .-...+..++++ ..++.++.
T Consensus 267 ~~~-----~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 267 NID-----AMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred ChH-----HHHHHHHHhhcCCCEEEEECc
Confidence 111 113445666664 66666553
No 413
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.32 E-value=0.055 Score=48.69 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=99.2
Q ss_pred cccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCCC----ChhH-HHhhCC-------eecCCHHhhcccCC
Q 027408 30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM----DPQL-EKETGA-------KFEEDLDTMLPKCD 94 (223)
Q Consensus 30 ~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~~----~~~~-~~~~g~-------~~~~~l~e~l~~aD 94 (223)
.++.|+..+|.+.|.|.-|-.+++.+.+.|. +|+.+|+... ..+. ...... ..... ++.+..+|
T Consensus 193 ~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~ad 271 (432)
T COG0281 193 TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGAD 271 (432)
T ss_pred hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCC
Confidence 3578999999999999999999999999998 5999998631 1110 000000 01111 45788999
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhC-CccEEEeeCCCCCCCCCCCCccCCCCe
Q 027408 95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQ 172 (223)
Q Consensus 95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g-~i~~a~lDv~~~ep~~~~~~l~~~~nv 172 (223)
+++-+.- .+.+.++.++.|.++.+|.=.|.... +..+++.++ ..| .|.+ ..-|. .|- +..|+
T Consensus 272 v~iG~S~-----~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~-~~~aaiva------TGrsd---~Pn-QvNNv 335 (432)
T COG0281 272 VLIGVSG-----VGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEW-GDGAAIVA------TGRSD---YPN-QVNNV 335 (432)
T ss_pred EEEEcCC-----CCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhc-CCCCEEEE------eCCCC---Ccc-cccce
Confidence 8876654 38899999999999999988887663 122222221 111 2321 11222 222 57899
Q ss_pred EEccCCCCCc-----HHHHHHHHHHHHHHHHHHHc
Q 027408 173 AMTPHVSGTT-----IDAQLRYAAGVKDMLDRYFK 202 (223)
Q Consensus 173 ~~tPH~a~~t-----~~~~~~~~~~~~~~i~~~~~ 202 (223)
++-|-+.-.. +.-.+.|...+++.|.++.+
T Consensus 336 L~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~ 370 (432)
T COG0281 336 LIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAR 370 (432)
T ss_pred eEcchhhhhhHhhccccCCHHHHHHHHHHHHhhcc
Confidence 9999876432 23345566677777777754
No 414
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=96.30 E-value=0.011 Score=55.85 Aligned_cols=70 Identities=19% Similarity=0.337 Sum_probs=49.3
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhhCCeecCC---HHhhcccCCEEEEcCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEED---LDTMLPKCDIVVVNTP 101 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~~~---l~e~l~~aDvVv~~~p 101 (223)
.....|+|||||-|..|+.+++.++.+|++|+++|+++..+.. +...-+..+.+ +.++++++|+|.....
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 3578999999999999999999999999999999987632221 11100111234 4456678999876543
No 415
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.28 E-value=0.062 Score=44.94 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-------------------H-H---HhhC----Cee--
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-------------------L-E---KETG----AKF-- 82 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-------------------~-~---~~~g----~~~-- 82 (223)
.|.+++|.|+|+|.+|..+|+.|...|. +++.+|....... . + .+.+ +..
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 5889999999999999999999998887 6888886431110 0 0 0111 111
Q ss_pred --c--CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCH-----------------HHHHH
Q 027408 83 --E--EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT-----------------QAVVD 140 (223)
Q Consensus 83 --~--~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~-----------------~al~~ 140 (223)
+ ++.++++ .+.|+|+.|+-. ...+..+++...+. .-.+|...+.|.-.|. ..+-+
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD~-~~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~ 164 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAIDS-IRAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK 164 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCCC-HHHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence 1 2455666 368999888753 33333343333222 2234445555554432 23556
Q ss_pred HHHhCCccEEEeeCCCCCCC
Q 027408 141 ACSSGHIAGYSGDVWNPQPA 160 (223)
Q Consensus 141 ~L~~g~i~~a~lDv~~~ep~ 160 (223)
.|++.++..-.-=||..|++
T Consensus 165 ~Lrk~~~~~~~~~v~S~E~~ 184 (231)
T cd00755 165 RLRKRGIFFGVPVVYSTEPP 184 (231)
T ss_pred HHHHcCCCCCeEEEeCCCCC
Confidence 67877776223335777753
No 416
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=96.27 E-value=0.055 Score=46.73 Aligned_cols=94 Identities=17% Similarity=0.274 Sum_probs=67.8
Q ss_pred CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCCh--h---H----HHhhC--CeecCCHHhhcccCCEEEEcCC
Q 027408 34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--Q---L----EKETG--AKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~---~----~~~~g--~~~~~~l~e~l~~aDvVv~~~p 101 (223)
|.|+|++.+|- .+++.++......+|+++.+..|..-.+ + . +++.| +....++++.++.+|+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 89999999995 5899999999999999999988864211 1 1 22223 4566799999999999987654
Q ss_pred CC--hhhh-----------hcccHHHHhcCCCCcEEEEc
Q 027408 102 LT--EKTR-----------GMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 102 ~~--~~t~-----------~~i~~~~~~~mk~ga~ivn~ 127 (223)
.. ++.+ .-++.+.++.-++++++..|
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 21 1111 34567777777777777766
No 417
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.26 E-value=0.013 Score=47.69 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=33.7
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 69 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~ 69 (223)
..|..++|.|+|+|.+|..+|+.|...|.. +..+|...
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 468999999999999999999999999985 88888653
No 418
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=96.26 E-value=0.018 Score=49.59 Aligned_cols=90 Identities=22% Similarity=0.317 Sum_probs=62.2
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhh-cccCCEEEEcCCCChhhhhcccH
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFDK 112 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~-l~~aDvVv~~~p~~~~t~~~i~~ 112 (223)
..|.++.|.|.|.+|..+++.++..|.+|++.+++....+.++++|+....+.++. -+..|+++.+.+.. ....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~-----~~~~ 240 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG-----ALVP 240 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH-----HHHH
Confidence 35789999999999999999999999999988876644555556665332122211 13468887765521 1236
Q ss_pred HHHhcCCCCcEEEEcC
Q 027408 113 DRIAKMKKGVLIVNNA 128 (223)
Q Consensus 113 ~~~~~mk~ga~ivn~s 128 (223)
+.++.++++..++..+
T Consensus 241 ~~~~~l~~~G~~v~~g 256 (329)
T cd08298 241 AALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHHhhcCCEEEEEc
Confidence 6788888888887664
No 419
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.26 E-value=0.025 Score=51.35 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhhCCeec--CCHHhhcccCCEEEEcCCCChhhhh-
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRG- 108 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~~- 108 (223)
++.+++|.|+|+|..|.+.++.|+..|.+|.++|........ ....|+... ....+.++..|+||.. |.-+....
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~ 81 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPS 81 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHH
Confidence 457889999999999999999999999999999975432211 111254432 1223456778977654 32221111
Q ss_pred ----------cccH-HHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 109 ----------MFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 109 ----------~i~~-~~~~~m-k~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
++.+ +.+..+ +...+-|--+.|+--...-|...|+.
T Consensus 82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 333332 22234455567777766667777765
No 420
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.25 E-value=0.14 Score=49.71 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=98.6
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCCC----C----hhHHHhhC-CeecCCHHhhcccCCEEEE
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM----D----PQLEKETG-AKFEEDLDTMLPKCDIVVV 98 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~~----~----~~~~~~~g-~~~~~~l~e~l~~aDvVv~ 98 (223)
++.+...+|.|.|.|.-|-.+|+.+...|. +++.+|+... . ......+- -....+|.|+++.+|+++=
T Consensus 180 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG 259 (752)
T PRK07232 180 GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG 259 (752)
T ss_pred CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE
Confidence 567899999999999999999999998888 6999997631 1 11111110 0223589999999998765
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccC
Q 027408 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 177 (223)
Q Consensus 99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH 177 (223)
. + +.+++.++.++.|.+..+|.=.|....- +.+..+++ ..|.|.+-+ ..+.| -+..|+++-|-
T Consensus 260 ~-s----~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atG---------rs~~p-nQ~NN~~~FPg 323 (752)
T PRK07232 260 L-S----AAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATG---------RSDYP-NQVNNVLCFPY 323 (752)
T ss_pred c-C----CCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEEC---------CcCCC-Ccccceeecch
Confidence 4 3 1478999999999999999999887752 22222222 223344332 11111 23567888886
Q ss_pred CCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 027408 178 VSGT-----TIDAQLRYAAGVKDMLDRYFK 202 (223)
Q Consensus 178 ~a~~-----t~~~~~~~~~~~~~~i~~~~~ 202 (223)
++-. ...-.+.|...+++.|.+...
T Consensus 324 i~~g~l~~~a~~i~~~m~~aaa~ala~~~~ 353 (752)
T PRK07232 324 IFRGALDVGATTINEEMKLAAVRAIAELAR 353 (752)
T ss_pred hhHHHHHcCCccCCHHHHHHHHHHHHhhcc
Confidence 5522 222234455555555555443
No 421
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.24 E-value=0.015 Score=55.63 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=51.3
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhhCCeec--------C
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E 84 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~ 84 (223)
-.|++|+|||.|..|.+.|..|+..|++|+++++.... .+..+.+|+... .
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i 404 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI 404 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence 47999999999999999999999999999999975421 122334455421 1
Q ss_pred CHHhhcccCCEEEEcCCC
Q 027408 85 DLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 85 ~l~e~l~~aDvVv~~~p~ 102 (223)
+++++..+.|.|++++..
T Consensus 405 ~~~~~~~~~DavilAtGa 422 (654)
T PRK12769 405 SLESLLEDYDAVFVGVGT 422 (654)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 455666789999998753
No 422
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.23 E-value=0.014 Score=48.06 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 69 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~ 69 (223)
++.++++.|+|. |.||+.+++.|...|++|++++|++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468899999995 9999999999999999999999976
No 423
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=96.22 E-value=0.028 Score=49.55 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=62.4
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeec---CC---HHhhcccCCEEEEcCCCChhh
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKT 106 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~---~~---l~e~l~~aDvVv~~~p~~~~t 106 (223)
-.|.++.|.|.|.+|...++.++..|.+|++.+++.... ...+++|+... .+ +.+.....|+++-+++...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~-- 256 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH-- 256 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH--
Confidence 368999999999999999999999999988887654222 22334565321 11 2223345799988876221
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q 027408 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 107 ~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
.....++.++++..++.++.
T Consensus 257 ---~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 257 ---PLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---HHHHHHHHhccCCEEEEECC
Confidence 12556788899998888874
No 424
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.20 E-value=0.036 Score=50.24 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=67.8
Q ss_pred EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--h---HHH-hhCCeec--CCHHhhcccCCEEEEcC--C-CChhh
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--Q---LEK-ETGAKFE--EDLDTMLPKCDIVVVNT--P-LTEKT 106 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~---~~~-~~g~~~~--~~l~e~l~~aDvVv~~~--p-~~~~t 106 (223)
+|.|||+|.+|.++|+.|+..|++|.++|...... . ..+ ..|+... .+ .+.+.++|+||... | .+|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 47899999999999999999999999999754311 1 112 2365432 23 45567899887754 2 23322
Q ss_pred h-------hcccHH-HH-hcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408 107 R-------GMFDKD-RI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146 (223)
Q Consensus 107 ~-------~~i~~~-~~-~~mk~ga~ivn~srg~~vd~~al~~~L~~g~ 146 (223)
. .++.+. .+ ..++...+-|.-+.|+.-...-+...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 122222 22 3333334556667788777777777777643
No 425
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=96.19 E-value=0.0096 Score=52.55 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=43.7
Q ss_pred EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhhCCeecCC---HHhhcccCCEEEEc
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEED---LDTMLPKCDIVVVN 99 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~~~---l~e~l~~aDvVv~~ 99 (223)
+|||||.|..|+.+++.++.+|++|+++|+++..... +...-+....+ +.++++.+|+|...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5899999999999999999999999999987633321 11100111234 55677889987543
No 426
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=96.19 E-value=0.0098 Score=50.02 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=54.8
Q ss_pred CeEEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q 027408 60 CNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV 138 (223)
Q Consensus 60 ~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al 138 (223)
.+|.+++|+.... +...++++....+..++++++|+|++|++ |....-+..+.-..++++.+||+++-|- ..+.|
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~~~~~~~~~ivS~~agi--~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELKSEKGKDKLLISIAAGV--TLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHhhhccCCCEEEEecCCC--CHHHH
Confidence 5799999976332 33345677767788899999999999999 4332222233333456678999998764 55667
Q ss_pred HHHHHh
Q 027408 139 VDACSS 144 (223)
Q Consensus 139 ~~~L~~ 144 (223)
.+.+..
T Consensus 86 ~~~~~~ 91 (245)
T TIGR00112 86 SQLLGG 91 (245)
T ss_pred HHHcCC
Confidence 666654
No 427
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=96.19 E-value=0.019 Score=50.46 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=60.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec---C--C-------HHhhc--ccCCEEEEc
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--D-------LDTML--PKCDIVVVN 99 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~--~-------l~e~l--~~aDvVv~~ 99 (223)
.|++|.|.|.|.+|..+++.++.+|. +|++.+++....+..+++|+..+ . + +.++. ...|+|+-+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 78999999999999999999999999 89888876544445555564211 1 1 11222 246888777
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
..... .....+..++++..++.++.
T Consensus 257 ~g~~~-----~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 257 SGHPA-----AVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCChH-----HHHHHHHHhccCCEEEEEcC
Confidence 64211 12456677788777777763
No 428
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.18 E-value=0.0085 Score=49.41 Aligned_cols=65 Identities=23% Similarity=0.229 Sum_probs=48.8
Q ss_pred EEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhhCCee-------cCCHHhhcccCCEEEEcCCCC
Q 027408 39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 39 igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p~~ 103 (223)
|.|+|. |.+|+.+++.|...+++|.+.-|+.... +..+..|++. .+++.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 689995 9999999999999999999998876221 2223445432 245667789999999999943
No 429
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=96.16 E-value=0.031 Score=48.43 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=63.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeecC--------CHHhhcc--cCCEEEEcCCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEE--------DLDTMLP--KCDIVVVNTPLT 103 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~--------~l~e~l~--~aDvVv~~~p~~ 103 (223)
.|++|.|.|.|.+|..+++.++..| .+|++.++++...+..+++|+.... .+.++.. ..|+++-+....
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~ 246 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD 246 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence 5889999999999999999999998 8998888765444455555642211 1222332 478888776621
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
+ ...+.+..++++..++.++..+
T Consensus 247 ~-----~~~~~~~~l~~~g~~i~~g~~~ 269 (340)
T cd05284 247 E-----TLALAAKLLAKGGRYVIVGYGG 269 (340)
T ss_pred H-----HHHHHHHHhhcCCEEEEEcCCC
Confidence 1 2356677788888888876544
No 430
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.15 E-value=0.016 Score=50.52 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=42.9
Q ss_pred EEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhh----------CCeecCCHHhhcccCCEEEEcCC
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET----------GAKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~----------g~~~~~~l~e~l~~aDvVv~~~p 101 (223)
||+|||.|.+|..+|..+...+. ++..+|.+....+ .+.++ .+....+--+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 58999999999999998866554 6999998653221 11111 11111222467889999999865
No 431
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=96.13 E-value=0.023 Score=49.39 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=59.0
Q ss_pred CCEEEEEcc-cHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-hCCeec-----CCHHhhc-----ccCCEEEEcCCC
Q 027408 36 GKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML-----PKCDIVVVNTPL 102 (223)
Q Consensus 36 g~~igIiG~-G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~-----~~l~e~l-----~~aDvVv~~~p~ 102 (223)
|.+|.|.|. |.+|...++.++.+|+ +|++.+++....+...+ +|+..+ .++.+.+ ...|+|+-++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 79988876533333333 565321 1232222 247888877652
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
+ .+ .+.++.++++..++.++
T Consensus 235 -~----~~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 235 -E----IS-DTVISQMNENSHIILCG 254 (345)
T ss_pred -H----HH-HHHHHHhccCCEEEEEe
Confidence 1 12 56778888888888775
No 432
>PLN02827 Alcohol dehydrogenase-like
Probab=96.13 E-value=0.023 Score=50.63 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=60.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-C------CHHhhc----c-cCCEEEEcCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E------DLDTML----P-KCDIVVVNTP 101 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~------~l~e~l----~-~aDvVv~~~p 101 (223)
.|.+|.|+|.|.+|..+++.++..|.+ |++.+++....+.++++|+..+ + +..+.+ . ..|+|+-++.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 272 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG 272 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence 589999999999999999999999985 7788876655566666675321 1 112211 1 4688877765
Q ss_pred CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408 102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR 129 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr 129 (223)
..+ .....+..++++ ..++.++-
T Consensus 273 ~~~-----~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 273 DTG-----IATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ChH-----HHHHHHHhhccCCCEEEEECC
Confidence 211 114556777776 77766653
No 433
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.13 E-value=0.026 Score=49.26 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=50.5
Q ss_pred CEEEEEc-ccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408 37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (223)
Q Consensus 37 ~~igIiG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~ 114 (223)
.+|+|+| .|.+|+.+.+.|.... .++.....+... . . .+.++.++++|+|++|+|... ..+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~~------s~~~ 66 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDDA------AREA 66 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHHH------HHHH
Confidence 5899999 5999999999998765 455544433211 1 1 233456678999999999322 2233
Q ss_pred HhcC-CCCcEEEEcC
Q 027408 115 IAKM-KKGVLIVNNA 128 (223)
Q Consensus 115 ~~~m-k~ga~ivn~s 128 (223)
...+ +.|..+||.|
T Consensus 67 ~~~~~~~g~~VIDlS 81 (313)
T PRK11863 67 VALIDNPATRVIDAS 81 (313)
T ss_pred HHHHHhCCCEEEECC
Confidence 3322 5688899988
No 434
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=96.12 E-value=0.02 Score=50.58 Aligned_cols=89 Identities=20% Similarity=0.174 Sum_probs=58.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec---C----CHHhhc-----ccCCEEEEcCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E----DLDTML-----PKCDIVVVNTP 101 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~----~l~e~l-----~~aDvVv~~~p 101 (223)
.|.+|.|.|.|.+|...++.++.+|. +|++.+++....+.++++|+..+ . ++.+.+ ..+|+|+-++.
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g 265 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG 265 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence 58999999999999999999999999 69999887655556666665321 1 122211 13688877765
Q ss_pred CChhhhhcccHHHHhcCCCC-cEEEEcC
Q 027408 102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA 128 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~s 128 (223)
... ...+.++.++++ ..++.++
T Consensus 266 ~~~-----~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 266 NVK-----VMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred ChH-----HHHHHHHhhccCCCeEEEEc
Confidence 211 124456667664 5666554
No 435
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.12 E-value=0.044 Score=48.10 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=43.6
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCC--CChh-----HHHh-----hCCeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVK--MDPQ-----LEKE-----TGAKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~--~~~~-----~~~~-----~g~~~~~~l~e~l~~aDvV 96 (223)
.+|+|+|. |.+|..+|..+...|. ++..+|++. ...+ .... .+.....+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999998876442 488999864 2111 1110 0111124567889999999
Q ss_pred EEcCC
Q 027408 97 VVNTP 101 (223)
Q Consensus 97 v~~~p 101 (223)
+++.-
T Consensus 81 VitAG 85 (323)
T cd00704 81 ILVGA 85 (323)
T ss_pred EEeCC
Confidence 98754
No 436
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=96.10 E-value=0.034 Score=47.26 Aligned_cols=91 Identities=23% Similarity=0.188 Sum_probs=60.4
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCH----Hhhc--ccCCEEEEcCC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTP 101 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l--~~aDvVv~~~p 101 (223)
-.|.+|.|.|.|.+|..+++.++..|++ |++..+++...+....+|+..+ .++ .++. ...|+++-+..
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g 207 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVG 207 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 3688999999999999999999999999 8888776533444455554211 122 2222 23788877654
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
.. ......++.|+++..+++++.
T Consensus 208 ~~-----~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 208 HQ-----WPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred CH-----HHHHHHHHHhccCCEEEEEcc
Confidence 11 122556677888888887764
No 437
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.09 E-value=0.025 Score=48.67 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=46.6
Q ss_pred CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---h-----CCe-------ecCCHHhhcccCCEEEE
Q 027408 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---T-----GAK-------FEEDLDTMLPKCDIVVV 98 (223)
Q Consensus 35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---~-----g~~-------~~~~l~e~l~~aDvVv~ 98 (223)
+|++|.|.| .|-||+.+++.|...|++|.+++++......... . .+. ....++++++++|+|+-
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 478999999 6999999999999999999988876432211110 0 111 12346677888998877
Q ss_pred cCC
Q 027408 99 NTP 101 (223)
Q Consensus 99 ~~p 101 (223)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 654
No 438
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.07 E-value=0.014 Score=47.85 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 69 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~ 69 (223)
++++++|.|.|. |.||..+++.+...|++|++.+|+.
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999996 8899999999999999999999865
No 439
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.07 E-value=0.071 Score=40.71 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=28.7
Q ss_pred EEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK 69 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~ 69 (223)
+|.|+|+|.+|..+++.|...|. ++.++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 599998763
No 440
>PRK07877 hypothetical protein; Provisional
Probab=96.06 E-value=0.02 Score=55.42 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=59.5
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCCh------------------hHHH----hh----CCee-
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDP------------------QLEK----ET----GAKF- 82 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~------------------~~~~----~~----g~~~- 82 (223)
..|..++|+|+|+| +|+.+|..|...|. ++..+|...... +.++ +. .+..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999 99999999998884 677777542100 0010 01 1111
Q ss_pred -----cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCC
Q 027408 83 -----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119 (223)
Q Consensus 83 -----~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk 119 (223)
.++++++++++|+|+-|+- +-+++.++++...+.-+
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI 222 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 1367888999999988776 56788888877666533
No 441
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=96.05 E-value=0.022 Score=50.09 Aligned_cols=89 Identities=24% Similarity=0.196 Sum_probs=60.7
Q ss_pred CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCeec------CCHHhhcc-----cCCEEEEcC
Q 027408 34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTMLP-----KCDIVVVNT 100 (223)
Q Consensus 34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~------~~l~e~l~-----~aDvVv~~~ 100 (223)
-.|.+|.|.|. |.+|...++.++.+|++|++.+++....+..+ .+|+..+ .++.+.+. ..|+++-++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 35899999999 99999999999999999988887654444443 4665321 12333221 368887776
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 101 PLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 101 p~~~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
.. . .....++.++++..++.++
T Consensus 237 G~--~----~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 237 GG--D----MLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CH--H----HHHHHHHHhccCCEEEEEC
Confidence 51 1 1256677888888887765
No 442
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=96.05 E-value=0.049 Score=41.75 Aligned_cols=97 Identities=14% Similarity=0.264 Sum_probs=68.7
Q ss_pred HHHHHHccCCCeEEEEcCCC----CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 027408 50 LLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125 (223)
Q Consensus 50 ~iA~~l~~~G~~V~~~d~~~----~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv 125 (223)
..++.|...|++|++=.-.. -+.+.-.+.|+...++.++++++||+|+-.-|. ..+.++.|++|++++
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p--------~~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPP--------SEEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCC--------CHHHHhhcCCCcEEE
Confidence 45677777799987765432 123344556888777778999999999877663 256678899999998
Q ss_pred EcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408 126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (223)
Q Consensus 126 n~srg~~vd~~al~~~L~~g~i~~a~lDv~~ 156 (223)
...... ....+++.|.+.++...++|...
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ip 118 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIP 118 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence 887655 58899999999999988887543
No 443
>PRK07411 hypothetical protein; Validated
Probab=96.03 E-value=0.016 Score=52.14 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=59.0
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh--------------------HHH---hhC----Cee-
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ--------------------LEK---ETG----AKF- 82 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~--------------------~~~---~~g----~~~- 82 (223)
..|..++|+|||+|.+|..+|+.|...|. ++..+|....... .++ +.+ +..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46899999999999999999999999997 4888886531110 000 111 111
Q ss_pred ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCC
Q 027408 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120 (223)
Q Consensus 83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ 120 (223)
. .+..+++.++|+|+.|+- +.+++.++++...+.-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 1 234567889998876654 566777777666655444
No 444
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.03 E-value=0.028 Score=47.04 Aligned_cols=88 Identities=22% Similarity=0.397 Sum_probs=61.8
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----CCe--e-cCCHHhhcc---cCCEEEE-----
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK--F-EEDLDTMLP---KCDIVVV----- 98 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~--~-~~~l~e~l~---~aDvVv~----- 98 (223)
+.|++|.=|||| |..+++.++..|.+|++.|.+++..+.++.. ++. + ..+.+++.. +.|+|++
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 799999999998 4588888889999999999988766666532 222 2 235566665 6898866
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 027408 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNN 127 (223)
Q Consensus 99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~ 127 (223)
|+| +|+. +-....+.+|||.+++-.
T Consensus 136 Hv~-dp~~---~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 136 HVP-DPES---FLRACAKLVKPGGILFLS 160 (243)
T ss_pred ccC-CHHH---HHHHHHHHcCCCcEEEEe
Confidence 455 2221 335677888998776543
No 445
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=96.02 E-value=0.031 Score=48.58 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=62.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec---C---CHHh----hcc-cCCEEEEcCCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E---DLDT----MLP-KCDIVVVNTPLT 103 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~---~l~e----~l~-~aDvVv~~~p~~ 103 (223)
.|++|.|.|.|.+|..+++.++..|.+|++..++....+...++|+..+ . ++.+ +.. ..|+++-++..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~- 243 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI- 243 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence 5789999999999999999999999999988876544455555665211 1 1111 111 47888877652
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~srg 130 (223)
.. .....+..++++..+++++..
T Consensus 244 ~~----~~~~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 244 PE----TCRNSVASLRKRGRHVQVGLT 266 (345)
T ss_pred HH----HHHHHHHHhhcCCEEEEeCCc
Confidence 11 124567788888888887643
No 446
>PRK12862 malic enzyme; Reviewed
Probab=96.01 E-value=0.11 Score=50.68 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=99.2
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCC-----CC---h----hHHHhhCCeecCCHHhhcccCCE
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----MD---P----QLEKETGAKFEEDLDTMLPKCDI 95 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~-----~~---~----~~~~~~g~~~~~~l~e~l~~aDv 95 (223)
++.|...+|.|.|.|.-|..+|+.+...|. +++.+|+.. .. . ..++.. ...+|.|+++.+|+
T Consensus 188 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~---~~~~l~e~~~~~~v 264 (763)
T PRK12862 188 GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT---DARTLAEVIEGADV 264 (763)
T ss_pred CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc---ccCCHHHHHcCCCE
Confidence 567899999999999999999999998888 699999652 11 1 112221 23589999999998
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEE
Q 027408 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 174 (223)
Q Consensus 96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~ 174 (223)
++=+.- .+++.++.++.|.+..+|.=.|....- ..+..+++ ..|.|.+-+ ..+.| -+..|+++
T Consensus 265 ~iG~s~-----~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atG---------rs~~p-~Q~NN~~~ 328 (763)
T PRK12862 265 FLGLSA-----AGVLKPEMVKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATG---------RSDYP-NQVNNVLC 328 (763)
T ss_pred EEEcCC-----CCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEEC---------CcCCC-Ccccceee
Confidence 865432 478999999999999999999887742 22222222 123344332 11112 23567888
Q ss_pred ccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 027408 175 TPHVSGT-----TIDAQLRYAAGVKDMLDRYFK 202 (223)
Q Consensus 175 tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~ 202 (223)
-|=++-. ...-.+.|...+++.|.+...
T Consensus 329 FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~ 361 (763)
T PRK12862 329 FPYIFRGALDVGATTINEEMKIAAVRAIAELAR 361 (763)
T ss_pred ccchhhhHHhcCCeeCCHHHHHHHHHHHHhccc
Confidence 8866532 222344455555566655543
No 447
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=96.01 E-value=0.028 Score=48.96 Aligned_cols=88 Identities=24% Similarity=0.195 Sum_probs=60.1
Q ss_pred CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-hCCeec------CCHHhhc-----ccCCEEEEcCC
Q 027408 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE------EDLDTML-----PKCDIVVVNTP 101 (223)
Q Consensus 35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~------~~l~e~l-----~~aDvVv~~~p 101 (223)
.|.+|.|.|. |.+|..+++.++.+|.+|++..++....+..++ +|+..+ .++.+.+ ...|+|+-++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 5899999998 999999999999999999888876544444444 564211 1222222 24678877665
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 102 LTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
. . ...+.++.++++..++.++
T Consensus 231 ~----~--~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 231 G----K--MLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred H----H--HHHHHHHHhccCcEEEEec
Confidence 1 1 1256677788888887775
No 448
>PRK12861 malic enzyme; Reviewed
Probab=95.96 E-value=0.12 Score=50.23 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=99.7
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCC-----CC---h----hHHHhhCCeecCCHHhhcccCCE
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----MD---P----QLEKETGAKFEEDLDTMLPKCDI 95 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~-----~~---~----~~~~~~g~~~~~~l~e~l~~aDv 95 (223)
++.|...+|.|.|.|.-|..+|+.+...|. +++.+|+.. +. . ..++.. ...+|.|+++.+|+
T Consensus 184 gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~---~~~~L~eai~~adv 260 (764)
T PRK12861 184 GKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQET---DARTLAEVIGGADV 260 (764)
T ss_pred CCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc---CCCCHHHHHhcCCE
Confidence 567899999999999999999999998898 699999543 10 1 122221 23589999999998
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEE
Q 027408 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 174 (223)
Q Consensus 96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~ 174 (223)
++=+ + ..+++.++.++.|.+..+|.=.|....- ..+..++ ..|.-.. +. . ..+.| -+..|+++
T Consensus 261 liG~-S----~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~~--~~g~aiv-aT----G---rs~~p-nQ~NN~l~ 324 (764)
T PRK12861 261 FLGL-S----AGGVLKAEMLKAMAARPLILALANPTPEIFPELAHA--TRDDVVI-AT----G---RSDYP-NQVNNVLC 324 (764)
T ss_pred EEEc-C----CCCCCCHHHHHHhccCCEEEECCCCCccCCHHHHHh--cCCCEEE-Ee----C---CcCCC-Cccceeee
Confidence 7644 3 2578999999999999999988887742 2222222 3344221 21 1 11112 23568888
Q ss_pred ccCCCCC-----cHHHHHHHHHHHHHHHHHHHcC
Q 027408 175 TPHVSGT-----TIDAQLRYAAGVKDMLDRYFKG 203 (223)
Q Consensus 175 tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~g 203 (223)
-|=++-. ...-.+.|...+++.|.....-
T Consensus 325 FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~~ 358 (764)
T PRK12861 325 FPYIFRGALDVGATTITREMEIAAVHAIAGLAEE 358 (764)
T ss_pred cchhhHHHHHcCCccCCHHHHHHHHHHHHhhCCc
Confidence 8876532 2233445555566666665543
No 449
>PRK10083 putative oxidoreductase; Provisional
Probab=95.96 E-value=0.036 Score=48.05 Aligned_cols=92 Identities=23% Similarity=0.292 Sum_probs=61.4
Q ss_pred CCCCEEEEEcccHHHHHHHHHHcc-CCCe-EEEEcCCCCChhHHHhhCCeec-----CCHHhhcc----cCCEEEEcCCC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP----KCDIVVVNTPL 102 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~-~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l~----~aDvVv~~~p~ 102 (223)
-.|.+|.|.|.|.+|..+++.++. +|.+ |++.++++...+.+.++|+... .++.+.+. +.|+|+-++..
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~ 238 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACH 238 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCC
Confidence 358899999999999999999986 6986 7778876655556666665321 12333332 24577666542
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg 130 (223)
. . ...+.++.++++..+++++..
T Consensus 239 ~-~----~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 239 P-S----ILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred H-H----HHHHHHHHhhcCCEEEEEccC
Confidence 1 1 125667788888888887643
No 450
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.95 E-value=0.031 Score=48.87 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCH----Hhhc--ccCCEEEEcCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL 102 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l--~~aDvVv~~~p~ 102 (223)
.|++|.|.|.|.+|..+++.++..|.. |++.+++....+.++++|+..+ .++ .++. ...|+++-++..
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG 245 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence 589999999999999999999999995 8888876544555566665321 111 1222 247888776652
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
. . .-.+.++.++++..+++++-
T Consensus 246 ~-~----~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 246 Q-D----TFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred H-H----HHHHHHHHhhcCCEEEEecc
Confidence 1 1 12566777888888877653
No 451
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.94 E-value=0.03 Score=49.17 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCCHH----------hhcc-cCCEEEEcCC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLD----------TMLP-KCDIVVVNTP 101 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~----------e~l~-~aDvVv~~~p 101 (223)
=.|.+++|+|+|.+|-+..+.++..|. +|++.|.++.+.+.++++|...+-+.. ++-. .+|+.+-++-
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G 263 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVG 263 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccC
Confidence 369999999999999999999999998 599999998888899999875432222 2223 6889988876
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
..+ .-++.+....++...+-++-..
T Consensus 264 ~~~-----~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 264 NVE-----VMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred CHH-----HHHHHHHHHhcCCeEEEEecCC
Confidence 332 2256666666666555555444
No 452
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=95.94 E-value=0.038 Score=47.79 Aligned_cols=91 Identities=24% Similarity=0.302 Sum_probs=60.7
Q ss_pred CCCCEEEEEcccHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhhCCeec------CCHH----hhcccCCEEEEcCCC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE------EDLD----TMLPKCDIVVVNTPL 102 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~----e~l~~aDvVv~~~p~ 102 (223)
-.|.+|.|.|.|.+|..+++.++. +|.+|++.++++...+.++++|+..+ .+.. +.....|+++++..
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~- 239 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAV- 239 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCC-
Confidence 357899999999999999999997 59999999887655566666665221 1111 12234575555543
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
... ...+.++.++++..++.++.
T Consensus 240 ~~~----~~~~~~~~l~~~G~~v~~g~ 262 (338)
T PRK09422 240 AKA----AFNQAVDAVRAGGRVVAVGL 262 (338)
T ss_pred CHH----HHHHHHHhccCCCEEEEEee
Confidence 121 22566777888888887753
No 453
>PRK08324 short chain dehydrogenase; Validated
Probab=95.93 E-value=0.022 Score=54.81 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=34.5
Q ss_pred cCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408 32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK 69 (223)
Q Consensus 32 ~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~ 69 (223)
..+.|+++.|.| .|.||+.+|+.|...|.+|++.+++.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~ 456 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE 456 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH
Confidence 457899999999 59999999999999999999999875
No 454
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.92 E-value=0.027 Score=53.84 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=51.6
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhhCCeec--------C
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E 84 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~ 84 (223)
..|++|+|||.|..|...|..|+..|++|++|++.... .+.....|+... .
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 46999999999999999999999999999999976521 122334454321 2
Q ss_pred CHHhhcccCCEEEEcCCC
Q 027408 85 DLDTMLPKCDIVVVNTPL 102 (223)
Q Consensus 85 ~l~e~l~~aDvVv~~~p~ 102 (223)
+++++....|.|++++-.
T Consensus 388 ~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 388 TFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 455666789999998764
No 455
>PRK15076 alpha-galactosidase; Provisional
Probab=95.91 E-value=0.0088 Score=54.54 Aligned_cols=114 Identities=14% Similarity=0.127 Sum_probs=67.6
Q ss_pred CEEEEEcccHHHHHHHH--HH---ccC-CCeEEEEcCCCCChhHH--------HhhC----CeecCCHHhhcccCCEEEE
Q 027408 37 KTVGTVGCGRIGKLLLQ--RL---KPF-NCNLLYHDRVKMDPQLE--------KETG----AKFEEDLDTMLPKCDIVVV 98 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~--~l---~~~-G~~V~~~d~~~~~~~~~--------~~~g----~~~~~~l~e~l~~aDvVv~ 98 (223)
++|+|||.|.+|...+- .+ ..+ +.+|..+|+++...+.. ...+ +...+++.+.+++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999955543 22 233 56899999875333211 1112 2335677899999999999
Q ss_pred cCCCC--h--------------------hhh-------hc----ccH---HHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q 027408 99 NTPLT--E--------------------KTR-------GM----FDK---DRIAKMKKGVLIVNNARGAIMDTQAVVDAC 142 (223)
Q Consensus 99 ~~p~~--~--------------------~t~-------~~----i~~---~~~~~mk~ga~ivn~srg~~vd~~al~~~L 142 (223)
+.-.. + +|. .+ +-. +.++...|++.+||.+..--+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 87542 1 110 00 011 223334589999999987645455554 22
Q ss_pred HhCCccEEE
Q 027408 143 SSGHIAGYS 151 (223)
Q Consensus 143 ~~g~i~~a~ 151 (223)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 344555544
No 456
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=95.89 E-value=0.11 Score=47.59 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=44.5
Q ss_pred CEEEEEcc-cHHHHHHHHHHccC-------CC--eEEEEcCCCCChhH-H----Hhh-----CCeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPF-------NC--NLLYHDRVKMDPQL-E----KET-----GAKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~-~----~~~-----g~~~~~~l~e~l~~aDvV 96 (223)
.+|+|||. |.+|..+|..+... +. +++.+|++....+- + ... .+....+..+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 47999999 99999999988655 44 68889987633221 1 100 122123445778899999
Q ss_pred EEcCC
Q 027408 97 VVNTP 101 (223)
Q Consensus 97 v~~~p 101 (223)
+++..
T Consensus 181 VitAG 185 (444)
T PLN00112 181 LLIGA 185 (444)
T ss_pred EECCC
Confidence 99864
No 457
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=95.89 E-value=0.038 Score=47.46 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=58.8
Q ss_pred CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHH----hhc-----ccCCEEEEcCCCCh
Q 027408 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD----TML-----PKCDIVVVNTPLTE 104 (223)
Q Consensus 35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~----e~l-----~~aDvVv~~~p~~~ 104 (223)
.|.+|.|+|. |.+|..+++.++..|.+|++.+++....+..+++|+..+.+.+ +.+ ...|+|+-++..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~-- 223 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG-- 223 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH--
Confidence 3679999998 9999999999999999999888776555555556652211111 111 236777665541
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
. ...+.++.++++..+|.++.
T Consensus 224 --~--~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 224 --K--TLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred --H--HHHHHHHHhhcCCEEEEEee
Confidence 1 12456777777777777753
No 458
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=95.89 E-value=0.035 Score=48.15 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=62.5
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec----CCH----Hhhc--ccCCEEEEcCCC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL----DTML--PKCDIVVVNTPL 102 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~~l----~e~l--~~aDvVv~~~p~ 102 (223)
..|.+|.|.|.|.+|..+++.++..|+ +|++.+..........++|+..+ .+. .++. ...|+++-+...
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~ 245 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGG 245 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 368999999999999999999999997 78888665433444455663211 111 1223 247888877652
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~ 131 (223)
. ......+..++++..+|.++...
T Consensus 246 ~-----~~~~~~~~~l~~~g~~v~~g~~~ 269 (344)
T cd08284 246 A-----AALDLAFDLVRPGGVISSVGVHT 269 (344)
T ss_pred H-----HHHHHHHHhcccCCEEEEECcCC
Confidence 1 12356678888888888887544
No 459
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=95.88 E-value=0.12 Score=44.98 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=49.2
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-Chh--------HHHhhCCe--ecCCHHhhcccCCEEEEcC
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ--------LEKETGAK--FEEDLDTMLPKCDIVVVNT 100 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~--------~~~~~g~~--~~~~l~e~l~~aDvVv~~~ 100 (223)
.+.|+||+++|- -++.++++..+..+|++|.+..|... ..+ .++..|.. ..+++ +.++++|+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 589999999996 57789999999999999999998642 211 12233543 34565 5689999998744
No 460
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.87 E-value=0.024 Score=49.48 Aligned_cols=94 Identities=29% Similarity=0.318 Sum_probs=58.0
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCChh----HHHh-h--CCeec---CCHHhhcccCCEEEEcCCC-
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ----LEKE-T--GAKFE---EDLDTMLPKCDIVVVNTPL- 102 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~----~~~~-~--g~~~~---~~l~e~l~~aDvVv~~~p~- 102 (223)
+||+|||. |.+|..+|..+...+. ++..+|.+ .... +... . .+... +++.+.+++||+|+++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 48999999 9999999999987664 79999986 3221 1111 0 11211 2235778999999998643
Q ss_pred -Ch-hhhh-cc--c----H---HHHhcCCCCcEEEEcCCCC
Q 027408 103 -TE-KTRG-MF--D----K---DRIAKMKKGVLIVNNARGA 131 (223)
Q Consensus 103 -~~-~t~~-~i--~----~---~~~~~mk~ga~ivn~srg~ 131 (223)
.| +++. ++ | + +.+....|.+++++++..-
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 12 1111 11 1 1 1223335789999997653
No 461
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.85 E-value=0.017 Score=54.21 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=32.7
Q ss_pred CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408 34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 69 (223)
Q Consensus 34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~ 69 (223)
-.|++|.|.|. |.||+.+++.|...|++|.+++|+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 36899999996 9999999999999999999999875
No 462
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.84 E-value=0.019 Score=49.62 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=69.3
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee--------------c----------CCHH
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--------------E----------EDLD 87 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--------------~----------~~l~ 87 (223)
-.....++.++|+|-+|-..+-.....|+-|..+|-.+...+..+..|.++ . .-+.
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a 239 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA 239 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence 356788899999999999999998999999999986542222222222111 0 1133
Q ss_pred hhcccCCEEEEc--CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408 88 TMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 88 e~l~~aDvVv~~--~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
+.+++.|+||.+ .|..|. ..++.++....||||.+|||.+.
T Consensus 240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlAa 282 (356)
T COG3288 240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLAA 282 (356)
T ss_pred HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEehh
Confidence 556789999875 354443 45788999999999999999864
No 463
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.82 E-value=0.08 Score=47.82 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=63.5
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc--ccCCEEEEcC--C-CChhhh---h
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNT--P-LTEKTR---G 108 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l--~~aDvVv~~~--p-~~~~t~---~ 108 (223)
++|.|+|+|..|.++|+.|+ .|.+|.++|..+.... .++.|+... . ++.+ .++|+|+..- | .+|... .
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 46899999999999999999 9999999996532221 223466543 2 2233 4689887652 2 223221 1
Q ss_pred cccH-HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 109 MFDK-DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 109 ~i~~-~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
++.+ +.+..+.+..+-|--+.|+.-...-+...|+.
T Consensus 77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 2222 22222222345566667887777777777775
No 464
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.81 E-value=0.021 Score=54.15 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=32.6
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 68 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~ 68 (223)
..|.+.+|.|+|+|.+|..+|+.|.+.|.. ++++|..
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 468899999999999999999999999984 7777753
No 465
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.79 E-value=0.025 Score=50.95 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=56.6
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------hHH----HhhC----Cee-
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QLE----KETG----AKF- 82 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~~~----~~~g----~~~- 82 (223)
..|..++|.|||+|.+|..+|+.|...|. ++.++|...... +.+ .+.+ +..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 46899999999999999999999998887 588888642100 000 0111 111
Q ss_pred ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117 (223)
Q Consensus 83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~ 117 (223)
. .+..++++++|+|+.|+ .+..++..+++...+.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~ 156 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA 156 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 1 23456788899887765 4567777777665554
No 466
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.78 E-value=0.034 Score=48.83 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=44.4
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCC---hhHHHhh---------CCeecCCHHhhcccCCEE
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKET---------GAKFEEDLDTMLPKCDIV 96 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~---~~~~~~~---------g~~~~~~l~e~l~~aDvV 96 (223)
.||+|||. |.+|..+|..+...|. ++..+|..... ...+.++ +.....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 37999998 9999999999876664 79999985411 1111111 111223556788999999
Q ss_pred EEcCC
Q 027408 97 VVNTP 101 (223)
Q Consensus 97 v~~~p 101 (223)
+++.-
T Consensus 84 VitAG 88 (323)
T TIGR01759 84 LLVGA 88 (323)
T ss_pred EEeCC
Confidence 99864
No 467
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.77 E-value=0.052 Score=49.96 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=52.1
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhhCCeec--------C
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E 84 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~ 84 (223)
-.+++|.|||.|.+|...|..|+..|++|+++++.+.. .+..++.|+... .
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 218 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI 218 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence 37899999999999999999999999999999875421 123445565421 1
Q ss_pred CHHhhcccCCEEEEcCCCCh
Q 027408 85 DLDTMLPKCDIVVVNTPLTE 104 (223)
Q Consensus 85 ~l~e~l~~aDvVv~~~p~~~ 104 (223)
.++++....|.|++++...+
T Consensus 219 ~~~~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 219 SLDDLLEDYDAVFLGVGTYR 238 (467)
T ss_pred CHHHHHhcCCEEEEEeCCCC
Confidence 34555567999999886543
No 468
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.76 E-value=0.082 Score=50.72 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=50.4
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhhCCeec--------C
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E 84 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~ 84 (223)
-.+++|+|||.|..|...|..|+..|++|+++++.... .+.....|+... .
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv 270 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI 270 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence 36899999999999999999999999999999976421 112233454321 1
Q ss_pred CHHhhcccCCEEEEcCCCC
Q 027408 85 DLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 85 ~l~e~l~~aDvVv~~~p~~ 103 (223)
+++++..+.|.|++++-..
T Consensus 271 ~~~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 271 TLEELQKEFDAVLLAVGAQ 289 (652)
T ss_pred CHHHHHhhcCEEEEEcCCC
Confidence 3455555689999987643
No 469
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.76 E-value=0.0066 Score=45.24 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=58.9
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCH----Hhhcc--cCCEEEEcCCCChhhhhcccHHH
Q 027408 46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPLTEKTRGMFDKDR 114 (223)
Q Consensus 46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l~--~aDvVv~~~p~~~~t~~~i~~~~ 114 (223)
.||...++.++.+|.+|++.++++...+.++++|...+ .++ .++.. ..|+|+.|++. + -.....
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-~----~~~~~~ 75 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-G----DTLQEA 75 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-H----HHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc-H----HHHHHH
Confidence 37888899999999999999998766777888875421 112 23343 48999999872 2 233678
Q ss_pred HhcCCCCcEEEEcCCCC
Q 027408 115 IAKMKKGVLIVNNARGA 131 (223)
Q Consensus 115 ~~~mk~ga~ivn~srg~ 131 (223)
++.++++..++.++-..
T Consensus 76 ~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 76 IKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHEEEEEEEEEESSTS
T ss_pred HHHhccCCEEEEEEccC
Confidence 88899999999887543
No 470
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.76 E-value=0.047 Score=54.72 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh---------------------hHHHhhCCee--------c
Q 027408 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP---------------------QLEKETGAKF--------E 83 (223)
Q Consensus 33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~---------------------~~~~~~g~~~--------~ 83 (223)
.-.|++|+|||-|..|-+.|..|...|+.|.+|.|+.+.- ++....|+.+ .
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence 4589999999999999999999999999999999875311 1112234432 2
Q ss_pred CCHHhhcccCCEEEEcCCCC
Q 027408 84 EDLDTMLPKCDIVVVNTPLT 103 (223)
Q Consensus 84 ~~l~e~l~~aDvVv~~~p~~ 103 (223)
.+++++.++-|.|++++-.|
T Consensus 1862 vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred ccHHHHhhccCeEEEEeCCC
Confidence 48899999999999987543
No 471
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.76 E-value=0.026 Score=49.59 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=43.6
Q ss_pred EEEEEcc-cHHHHHHHHHHccCC-------CeEEEEcCCCCCh-hHHHhh-----------CCeecCCHHhhcccCCEEE
Q 027408 38 TVGTVGC-GRIGKLLLQRLKPFN-------CNLLYHDRVKMDP-QLEKET-----------GAKFEEDLDTMLPKCDIVV 97 (223)
Q Consensus 38 ~igIiG~-G~iG~~iA~~l~~~G-------~~V~~~d~~~~~~-~~~~~~-----------g~~~~~~l~e~l~~aDvVv 97 (223)
+|+|+|. |.+|+.++..|...+ .+|..+|+.+... ...... .+....++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999987644 4799999854211 000000 1112346668889999998
Q ss_pred EcCC
Q 027408 98 VNTP 101 (223)
Q Consensus 98 ~~~p 101 (223)
.+.-
T Consensus 84 ~tAG 87 (325)
T cd01336 84 LVGA 87 (325)
T ss_pred EeCC
Confidence 8754
No 472
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.74 E-value=0.062 Score=44.31 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=32.9
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 69 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~ 69 (223)
.+.++++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 9999999999999999999888754
No 473
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.74 E-value=0.097 Score=47.66 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=65.7
Q ss_pred CCC-CEEEEEcccHHHHHHHHHHccC--CCeEEEEcCCCCCh--hHHHhhCCeec-C-CHHhhcccCCEEEEcC--C-CC
Q 027408 34 LEG-KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDP--QLEKETGAKFE-E-DLDTMLPKCDIVVVNT--P-LT 103 (223)
Q Consensus 34 l~g-~~igIiG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~--~~~~~~g~~~~-~-~l~e~l~~aDvVv~~~--p-~~ 103 (223)
+.+ ++|.|+|+|..|.+.++.+... |++|.++|...... +..+. |+... . ...+.+.++|+||... | .+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~ 82 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALAT 82 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCC
Confidence 556 7899999999999999999876 58899999754222 11222 55432 1 1234457899887754 2 23
Q ss_pred hhhhh-------cccH-HHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408 104 EKTRG-------MFDK-DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 104 ~~t~~-------~i~~-~~~~-~mk~ga~ivn~srg~~vd~~al~~~L~~ 144 (223)
|.... ++.+ +.+. .++...+-|--+.|+.-...-+...|+.
T Consensus 83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 32211 2222 2322 2333344455566777766667777765
No 474
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.72 E-value=0.024 Score=38.85 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.4
Q ss_pred EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM 70 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~ 70 (223)
+|.|||.|.+|-.+|..++.+|.+|.++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998763
No 475
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.71 E-value=0.021 Score=50.40 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=48.9
Q ss_pred EEEEEc-ccHHHHHHHHHHccCCCe---EEEEcCCCCChhHHHhhCCe-ecC--CHHhhcccCCEEEEcCCCChhhhhcc
Q 027408 38 TVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEE--DLDTMLPKCDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 38 ~igIiG-~G~iG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~g~~-~~~--~l~e~l~~aDvVv~~~p~~~~t~~~i 110 (223)
+|+|+| .|.+|+.+++.|...++. +.++.+.....+.....+.. .+. +. +.+.++|+|++|+|....
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~s----- 74 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSVS----- 74 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHHH-----
Confidence 589999 699999999999886654 33443332111111111211 111 22 334789999999993322
Q ss_pred cHHHHh-cCCCCcEEEEcC
Q 027408 111 DKDRIA-KMKKGVLIVNNA 128 (223)
Q Consensus 111 ~~~~~~-~mk~ga~ivn~s 128 (223)
.+... .++.|+.+||.+
T Consensus 75 -~~~a~~~~~~G~~VID~s 92 (339)
T TIGR01296 75 -KEFAPKAAKCGAIVIDNT 92 (339)
T ss_pred -HHHHHHHHHCCCEEEECC
Confidence 22222 235678888877
No 476
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=95.71 E-value=0.018 Score=50.51 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=42.4
Q ss_pred EEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCCh-hHHHhh-----------CCeecCCHHhhcccCCEEE
Q 027408 38 TVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDP-QLEKET-----------GAKFEEDLDTMLPKCDIVV 97 (223)
Q Consensus 38 ~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~~-~~~~~~-----------g~~~~~~l~e~l~~aDvVv 97 (223)
+|+|||. |.+|..+|..+...+. ++..+|+.+... ...... .+....+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999876443 589999854221 101000 1111124467889999999
Q ss_pred EcCC
Q 027408 98 VNTP 101 (223)
Q Consensus 98 ~~~p 101 (223)
++.-
T Consensus 81 itAG 84 (324)
T TIGR01758 81 LVGA 84 (324)
T ss_pred EcCC
Confidence 8764
No 477
>PRK13529 malate dehydrogenase; Provisional
Probab=95.70 E-value=0.29 Score=45.89 Aligned_cols=166 Identities=12% Similarity=0.119 Sum_probs=101.8
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHcc----CCC-------eEEEEcCCCC---C-hh-------HHHhhC-C------e
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKP----FNC-------NLLYHDRVKM---D-PQ-------LEKETG-A------K 81 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~----~G~-------~V~~~d~~~~---~-~~-------~~~~~g-~------~ 81 (223)
+..|...+|.|+|.|..|..+|+.+.. .|. +++.+|+... . .+ .++... . .
T Consensus 290 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~ 369 (563)
T PRK13529 290 GEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEG 369 (563)
T ss_pred CCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccccc
Confidence 467899999999999999999998875 577 6889987631 1 11 111110 0 0
Q ss_pred ecCCHHhhcccC--CEEEEcCCCChhhhhcccHHHHhcCCC---CcEEEEcCCCCccCHHHHHHHHH--hCCccEE-Eee
Q 027408 82 FEEDLDTMLPKC--DIVVVNTPLTEKTRGMFDKDRIAKMKK---GVLIVNNARGAIMDTQAVVDACS--SGHIAGY-SGD 153 (223)
Q Consensus 82 ~~~~l~e~l~~a--DvVv~~~p~~~~t~~~i~~~~~~~mk~---ga~ivn~srg~~vd~~al~~~L~--~g~i~~a-~lD 153 (223)
...+|.|+++.+ |+++=+.. ..++++++.++.|.+ ..+|.=.|.....-|..-.++.+ +|+...| +..
T Consensus 370 ~~~~L~e~v~~~kPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGsp 445 (563)
T PRK13529 370 DVISLLEVVRNVKPTVLIGVSG----QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSP 445 (563)
T ss_pred CCCCHHHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCC
Confidence 114789999887 98865432 246899999999987 88999999887755544444444 4543322 221
Q ss_pred CCCCCCCCCC---CCccCCCCeEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHcC
Q 027408 154 VWNPQPAPKD---HPWRYMPNQAMTPHVSGT-----TIDAQLRYAAGVKDMLDRYFKG 203 (223)
Q Consensus 154 v~~~ep~~~~---~~l~~~~nv~~tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~g 203 (223)
| .|..-+ ...-+..|+++-|=++-. .....+.|...+++.|.+...-
T Consensus 446 -f--~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~ 500 (563)
T PRK13529 446 -F--APVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPL 500 (563)
T ss_pred -C--CCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCcc
Confidence 1 111111 111245688888876532 2223345555666666665543
No 478
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=95.67 E-value=0.052 Score=47.08 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=41.2
Q ss_pred EEcccHHHHHHHHHHccCCC--eEEEEcCCCCCh-hHHHhh---------CCeecCCHHhhcccCCEEEEcCC
Q 027408 41 TVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDP-QLEKET---------GAKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 41 IiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~-~~~~~~---------g~~~~~~l~e~l~~aDvVv~~~p 101 (223)
|||.|.+|..+|..+...+. ++..+|++.... ..+.++ .+....+..+.+++||+|+++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 69999999999999876665 699999865322 111111 12222233467889999999765
No 479
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.67 E-value=0.1 Score=45.83 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=51.9
Q ss_pred CEEEEEcccHHHHHHHHHHccC---CCeEE-EEcCCC-CChhHHHhhCC---eecCCHHhhccc--CCEEEEcCCCChh
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPF---NCNLL-YHDRVK-MDPQLEKETGA---KFEEDLDTMLPK--CDIVVVNTPLTEK 105 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~---G~~V~-~~d~~~-~~~~~~~~~g~---~~~~~l~e~l~~--aDvVv~~~p~~~~ 105 (223)
-++||+|+|.|++-.++.+... ++.|. +++|+. ...+.++..++ +.+.+.+|++++ +|+|++..|....
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 4799999999999999999654 56655 667754 34456666676 457899999976 5999999985443
No 480
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=95.67 E-value=0.068 Score=47.21 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=62.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCHHhhc-----ccCCEEEEcCCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT 103 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l-----~~aDvVv~~~p~~ 103 (223)
.|++|.|.|.|.+|..+++.++..|.+ |++.+++....+..+++++..+ .++.+.+ ...|+|+-++...
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~ 265 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP 265 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence 589999999999999999999999994 8888876644555555554221 1222211 3478888877521
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408 104 EKTRGMFDKDRIAKMKKGVLIVNNARG 130 (223)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~ivn~srg 130 (223)
+ .....++.++++..++.++..
T Consensus 266 ~-----~~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 266 A-----VIEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred H-----HHHHHHHHhccCCEEEEeCcC
Confidence 1 125667778888888887654
No 481
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.66 E-value=0.049 Score=45.38 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=80.1
Q ss_pred CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhhC--------------CeecCCHHhhcc
Q 027408 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG--------------AKFEEDLDTMLP 91 (223)
Q Consensus 37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g--------------~~~~~~l~e~l~ 91 (223)
.+|+|+|-|.+|+++|-.++..|++|..||..+..... .++.| +....+++|+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 47999999999999999999999999999986531110 01111 233578899999
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCC
Q 027408 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 171 (223)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~n 171 (223)
.+=.|--|+|..=..+.-+-+ .+..+-....|+..| -+.+-..-+.+.|.+..- .|=++ |.. .|++ .|=
T Consensus 84 ~Ai~iQEcvpE~L~lkk~ly~-qlD~i~d~~tIlaSS-TSt~mpS~~s~gL~~k~q---~lvaH---PvN--PPyf-iPL 152 (313)
T KOG2305|consen 84 GAIHIQECVPEDLNLKKQLYK-QLDEIADPTTILASS-TSTFMPSKFSAGLINKEQ---CLVAH---PVN--PPYF-IPL 152 (313)
T ss_pred hhhhHHhhchHhhHHHHHHHH-HHHHhcCCceEEecc-ccccChHHHhhhhhhhhh---eeEec---CCC--CCcc-cch
Confidence 988888899833222222212 222233334444443 344444445555544321 11111 221 1322 355
Q ss_pred eEEccCCCCCcHHHHHHH
Q 027408 172 QAMTPHVSGTTIDAQLRY 189 (223)
Q Consensus 172 v~~tPH~a~~t~~~~~~~ 189 (223)
|-+-|| -+.+.++.+|.
T Consensus 153 vElVPa-PwTsp~tVdrt 169 (313)
T KOG2305|consen 153 VELVPA-PWTSPDTVDRT 169 (313)
T ss_pred heeccC-CCCChhHHHHH
Confidence 666675 45666666654
No 482
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.64 E-value=0.056 Score=46.93 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=57.9
Q ss_pred CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecC-----CHHh--hc--ccCCEEEEcCCCCh
Q 027408 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT--ML--PKCDIVVVNTPLTE 104 (223)
Q Consensus 35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----~l~e--~l--~~aDvVv~~~p~~~ 104 (223)
.|.+|.|.|. |.+|..+++.++..|.+|++.+.+. ..+.++++|+..+. ...+ .. +..|+++-+...
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-- 253 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG-- 253 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH--
Confidence 5899999998 9999999999999999988777544 34444555542211 1111 11 247888776651
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcC
Q 027408 105 KTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
. .....++.++++..+++++
T Consensus 254 --~--~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 254 --P--LFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred --H--HHHHHHHHhccCCEEEEec
Confidence 1 1255677788887777764
No 483
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.63 E-value=0.039 Score=48.73 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=48.4
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCC-CeEEEE-cCCCCC-hhHHHhhC----------Ce--ecCC-HHhhcccCCEEEEc
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFN-CNLLYH-DRVKMD-PQLEKETG----------AK--FEED-LDTMLPKCDIVVVN 99 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G-~~V~~~-d~~~~~-~~~~~~~g----------~~--~~~~-l~e~l~~aDvVv~~ 99 (223)
.+|+|+|. |.+|+.+++.+.... +++... +..... ........ .. .+.+ .++.+.++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 47999995 999999999997755 676655 433211 11111010 01 1111 12345789999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
+|...... +. . .....|..+|+.|
T Consensus 81 ~p~~~s~~-~~-~---~~~~~G~~VIDls 104 (341)
T TIGR00978 81 LPSEVAEE-VE-P---KLAEAGKPVFSNA 104 (341)
T ss_pred CCHHHHHH-HH-H---HHHHCCCEEEECC
Confidence 99432211 11 1 2224577677665
No 484
>PRK06128 oxidoreductase; Provisional
Probab=95.63 E-value=0.048 Score=46.82 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCC
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRV 68 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~ 68 (223)
.+.||++.|.|. |.||+.+|+.|...|++|++..++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999999996 999999999999999998876653
No 485
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.61 E-value=0.034 Score=48.81 Aligned_cols=71 Identities=20% Similarity=0.177 Sum_probs=48.5
Q ss_pred ccCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhh----CCee-------cCCHHhhcccCCEEE
Q 027408 31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKET----GAKF-------EEDLDTMLPKCDIVV 97 (223)
Q Consensus 31 ~~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~----g~~~-------~~~l~e~l~~aDvVv 97 (223)
+++-++++|.|.| .|.||+.+++.|...|.+|++.+++..... ..... ++.. ...+++++++.|+|+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 5678999999999 599999999999999999998887542211 11110 1111 123456677789887
Q ss_pred EcCC
Q 027408 98 VNTP 101 (223)
Q Consensus 98 ~~~p 101 (223)
-+..
T Consensus 85 h~A~ 88 (353)
T PLN02896 85 HVAA 88 (353)
T ss_pred ECCc
Confidence 6553
No 486
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=95.60 E-value=0.066 Score=48.11 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=63.6
Q ss_pred CCCCEEEEEcccHHHHHHHHHHccCCCeE-EEEcCCCCChhHHHhhCCeecC-----CHHh----hc--ccCCEEEEcCC
Q 027408 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEE-----DLDT----ML--PKCDIVVVNTP 101 (223)
Q Consensus 34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~g~~~~~-----~l~e----~l--~~aDvVv~~~p 101 (223)
-.|.+|.|.|.|.+|..+++.++.+|.++ ++.+++....+.++++|+..+. ++.+ +. ...|+++-++.
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 35889999999999999999999999984 4556655455666777764221 2222 22 24798888776
Q ss_pred CChhh---------hhcccHHHHhcCCCCcEEEEcCC
Q 027408 102 LTEKT---------RGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 102 ~~~~t---------~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
....- ....-++.++.++++..++.++-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 32100 00112566788888888888765
No 487
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.60 E-value=0.039 Score=49.63 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=53.5
Q ss_pred CCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCC
Q 027408 34 LEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 34 l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p 101 (223)
..|++|+|+|+ ..-+..+++.|...|.+|.+|||.-.... .+++...+++.+++++||+|++.+-
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRM 368 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence 47899999996 34577899999999999999999642222 4478888999999999999998875
No 488
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.60 E-value=0.036 Score=48.92 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=52.4
Q ss_pred CCCEEEEEcc-cHHHHHHHHHHcc--CC-CeEEEEcCCCCChh-H-HHhhCCeecCCHHhh-cccCCEEEEcCCCChhhh
Q 027408 35 EGKTVGTVGC-GRIGKLLLQRLKP--FN-CNLLYHDRVKMDPQ-L-EKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTR 107 (223)
Q Consensus 35 ~g~~igIiG~-G~iG~~iA~~l~~--~G-~~V~~~d~~~~~~~-~-~~~~g~~~~~~l~e~-l~~aDvVv~~~p~~~~t~ 107 (223)
.+.+|+|||. |.+|+.+.+.|.. +. .++..+.......+ . ....... +.++++. +.++|++++++|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~-v~~~~~~~~~~~Dvvf~a~p~~---- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVT-VQDAAEFDWSQAQLAFFVAGRE---- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceE-EEeCchhhccCCCEEEECCCHH----
Confidence 5678999996 9999999999987 43 35554432211111 1 1111122 2244444 37899999999932
Q ss_pred hcccHHHHhcC-CCCcEEEEcC
Q 027408 108 GMFDKDRIAKM-KKGVLIVNNA 128 (223)
Q Consensus 108 ~~i~~~~~~~m-k~ga~ivn~s 128 (223)
+..+....+ +.|+.+||.|
T Consensus 78 --~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 78 --ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred --HHHHHHHHHHHCCCEEEECC
Confidence 223333332 5688899988
No 489
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=95.59 E-value=0.049 Score=47.17 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=59.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCee-cC----CHHhhc---ccCCEEEEcCCCChh
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKF-EE----DLDTML---PKCDIVVVNTPLTEK 105 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~-~~----~l~e~l---~~aDvVv~~~p~~~~ 105 (223)
.|.+|.|.|.|.+|+.+++.++.+|. +|++.+++....+..++++... +. ++.++. ...|+++-+.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~- 243 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPA- 243 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHH-
Confidence 79999999999999999999999998 7888887654444445555421 11 122222 12688777664211
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~sr 129 (223)
...+.++.++++..+|+++.
T Consensus 244 ----~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 244 ----ALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ----HHHHHHHHHhcCCEEEEEec
Confidence 12566777788888887753
No 490
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.59 E-value=0.062 Score=47.30 Aligned_cols=92 Identities=20% Similarity=0.366 Sum_probs=55.3
Q ss_pred CEEEEEcc-cHHHHHHHHHHccC-CCeEEEEcCCC-CChhHHHhh-CCe------e-cCCHHhh-cccCCEEEEcCCCCh
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVK-MDPQLEKET-GAK------F-EEDLDTM-LPKCDIVVVNTPLTE 104 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~-G~~V~~~d~~~-~~~~~~~~~-g~~------~-~~~l~e~-l~~aDvVv~~~p~~~ 104 (223)
.||+|+|. |-.|..+.+.|... ..++..+..+. ........+ +.. . ..+.+++ ..+||+|++|+|...
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~ 82 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV 82 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence 58999995 99999999999876 45666655433 222222111 111 0 1123333 456999999999332
Q ss_pred hhhhcccHHHHhc-CCCCcEEEEcCCCCccC
Q 027408 105 KTRGMFDKDRIAK-MKKGVLIVNNARGAIMD 134 (223)
Q Consensus 105 ~t~~~i~~~~~~~-mk~ga~ivn~srg~~vd 134 (223)
. .+.... +.+|..|||.|----++
T Consensus 83 s------~~~v~~l~~~g~~VIDLSadfR~~ 107 (349)
T COG0002 83 S------AELVPELLEAGCKVIDLSADFRLK 107 (349)
T ss_pred H------HHHHHHHHhCCCeEEECCcccccC
Confidence 2 233332 33567799999766665
No 491
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.58 E-value=0.022 Score=48.87 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=45.5
Q ss_pred CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-------ecCCHHhhcccCCEEEEcCC
Q 027408 37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTP 101 (223)
Q Consensus 37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~e~l~~aDvVv~~~p 101 (223)
++|.|.|. |.||+.+++.|...|.+|++++++..........++. ..+++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 47899995 9999999999999999999999865322111111222 11345667788999887664
No 492
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=95.57 E-value=0.065 Score=45.84 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=53.8
Q ss_pred CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHH-------hhc--ccCCEEEEcCCCChh
Q 027408 36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD-------TML--PKCDIVVVNTPLTEK 105 (223)
Q Consensus 36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~-------e~l--~~aDvVv~~~p~~~~ 105 (223)
+.+|.|.|. |.+|..+++.++..|.+|++.+++....+...++|.....+.. ... ...|+|+-++..
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~--- 223 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGG--- 223 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCch---
Confidence 568999998 9999999999999999999888876444444555542111111 111 135666544331
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q 027408 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 106 t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
. ...+.++.++++..+|.++
T Consensus 224 -~--~~~~~~~~l~~~g~~v~~g 243 (325)
T cd05280 224 -D--VLANLLKQTKYGGVVASCG 243 (325)
T ss_pred -H--HHHHHHHhhcCCCEEEEEe
Confidence 1 1245566666666666654
No 493
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=95.57 E-value=0.053 Score=47.84 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=50.3
Q ss_pred CC-CCCEEEEEcc-------cHHHHHHHHHHccCCCeEEEEcC-CC--CChhH-------HHhhC--CeecCCHHhhccc
Q 027408 33 DL-EGKTVGTVGC-------GRIGKLLLQRLKPFNCNLLYHDR-VK--MDPQL-------EKETG--AKFEEDLDTMLPK 92 (223)
Q Consensus 33 ~l-~g~~igIiG~-------G~iG~~iA~~l~~~G~~V~~~d~-~~--~~~~~-------~~~~g--~~~~~~l~e~l~~ 92 (223)
.+ .|+||+|++. +++.++++..+..+|++|.+..| .. ...+. ++..| +...+++++.+++
T Consensus 165 ~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~ 244 (335)
T PRK04523 165 TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAG 244 (335)
T ss_pred CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC
Confidence 37 7999987654 38999999999999999999998 43 12221 12334 4456899999999
Q ss_pred CCEEEEcC
Q 027408 93 CDIVVVNT 100 (223)
Q Consensus 93 aDvVv~~~ 100 (223)
+|+|..-.
T Consensus 245 aDvvy~~~ 252 (335)
T PRK04523 245 ADVVYAKS 252 (335)
T ss_pred CCEEEece
Confidence 99998754
No 494
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.058 Score=49.22 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=64.7
Q ss_pred EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-----HHHhhCCeec--CCHH-----hhcccCCEEEEcCCCChh
Q 027408 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEKETGAKFE--EDLD-----TMLPKCDIVVVNTPLTEK 105 (223)
Q Consensus 38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-----~~~~~g~~~~--~~l~-----e~l~~aDvVv~~~p~~~~ 105 (223)
+|.|||.|..|.+.|+.|...|++|.++|+...... .....|+... ...+ +.+.+.|+|+......+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 689999999999999999999999999997653211 1233455432 1121 456789998874332221
Q ss_pred hhh----------cccHH-H-HhcCCCC-cEEEEcCCCCccCHHHHHHHHHh
Q 027408 106 TRG----------MFDKD-R-IAKMKKG-VLIVNNARGAIMDTQAVVDACSS 144 (223)
Q Consensus 106 t~~----------~i~~~-~-~~~mk~g-a~ivn~srg~~vd~~al~~~L~~ 144 (223)
..- ++.+- . ...+++. .+-|--+.|+.-...-|...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 111 12222 2 2333333 34455667877666666667765
No 495
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.56 E-value=0.089 Score=45.40 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=68.8
Q ss_pred CCCEEEEEcc-cHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeecCCHHhhccc--CCEEEEcCCCChhhhhcc
Q 027408 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGMF 110 (223)
Q Consensus 35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~--aDvVv~~~p~~~~t~~~i 110 (223)
...+|.|.|. |.+|+.+-+.+.+.|.+ |..+++..-.. .-.|+..+.+++|+-+. .|+.++++|.. .+...+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~---~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l 80 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGT---TVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAI 80 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcc---eecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHH
Confidence 3567999995 99999999999988887 33455541122 23577778899998876 79999999922 222222
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150 (223)
Q Consensus 111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a 150 (223)
++..+.=-+.++++..+-++ -+++.|.+..++..++-.
T Consensus 81 -~e~~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~giril 118 (286)
T TIGR01019 81 -FEAIDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLI 118 (286)
T ss_pred -HHHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEE
Confidence 22222111233343333332 256788888888766643
No 496
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.55 E-value=0.29 Score=46.10 Aligned_cols=162 Identities=12% Similarity=0.099 Sum_probs=100.0
Q ss_pred ccCCCCCEEEEEcccHHHHHHHHHHcc-----CCC-------eEEEEcCCCC----Chh--------HHHhhCCeecCCH
Q 027408 31 AYDLEGKTVGTVGCGRIGKLLLQRLKP-----FNC-------NLLYHDRVKM----DPQ--------LEKETGAKFEEDL 86 (223)
Q Consensus 31 ~~~l~g~~igIiG~G~iG~~iA~~l~~-----~G~-------~V~~~d~~~~----~~~--------~~~~~g~~~~~~l 86 (223)
+..|...+|.|+|.|..|..+|+.+.. .|. +++.+|+... ..+ .++. .....+|
T Consensus 316 g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~--~~~~~~L 393 (581)
T PLN03129 316 GGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD--HEPGASL 393 (581)
T ss_pred CCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh--cccCCCH
Confidence 467899999999999999999998876 466 6888887631 101 1111 1234689
Q ss_pred Hhhccc--CCEEEEcCCCChhhhhcccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH--hCCccEEEeeCCCCCC
Q 027408 87 DTMLPK--CDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGHIAGYSGDVWNPQP 159 (223)
Q Consensus 87 ~e~l~~--aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~--~g~i~~a~lDv~~~ep 159 (223)
.|+++. .|+++=+.. ..+++.++.++.|. +..+|.=.|...-.-|..-.++.+ +|+...|. ..|
T Consensus 394 ~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~At-----GSP 464 (581)
T PLN03129 394 LEAVKAIKPTVLIGLSG----VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFAS-----GSP 464 (581)
T ss_pred HHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEe-----CCC
Confidence 999988 898876542 23689999999995 778888888776433333333333 35533221 112
Q ss_pred CCC---C---CCccCCCCeEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHcC
Q 027408 160 APK---D---HPWRYMPNQAMTPHVSGT-----TIDAQLRYAAGVKDMLDRYFKG 203 (223)
Q Consensus 160 ~~~---~---~~l~~~~nv~~tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~g 203 (223)
.++ + ...-+..|+++-|=++-. .....+.|...+++.|.++..-
T Consensus 465 f~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~ 519 (581)
T PLN03129 465 FDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTE 519 (581)
T ss_pred CCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCc
Confidence 211 1 111245688888876632 2223455555666666666543
No 497
>PRK14851 hypothetical protein; Provisional
Probab=95.53 E-value=0.17 Score=48.74 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=31.9
Q ss_pred cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (223)
Q Consensus 32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~ 68 (223)
..|.+++|+|+|+|.+|..+|..|...|. ++.++|..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 46899999999999999999999998887 46677643
No 498
>PLN02214 cinnamoyl-CoA reductase
Probab=95.50 E-value=0.041 Score=48.32 Aligned_cols=69 Identities=25% Similarity=0.231 Sum_probs=48.4
Q ss_pred CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChh--HHHhh-----CCe-------ecCCHHhhcccCCEEE
Q 027408 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKET-----GAK-------FEEDLDTMLPKCDIVV 97 (223)
Q Consensus 33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~--~~~~~-----g~~-------~~~~l~e~l~~aDvVv 97 (223)
.+.+++|.|.|. |.||+.+++.|...|++|.+..|+..... ..... .+. ...+++++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 467899999997 99999999999999999999988643211 00110 111 1234567778899887
Q ss_pred EcCC
Q 027408 98 VNTP 101 (223)
Q Consensus 98 ~~~p 101 (223)
-+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7764
No 499
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=95.50 E-value=0.063 Score=46.70 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=59.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeec-----CCH----Hhhc--ccCCEEEEcCCC
Q 027408 35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL 102 (223)
Q Consensus 35 ~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l--~~aDvVv~~~p~ 102 (223)
.|.+|.|.|.|.+|..+++.++.+| .+|++++++.......+++|+..+ .++ .++. ...|+|+-++..
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGI 245 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 5889999999999999999999999 688888775544444455554211 111 1222 247888877642
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (223)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~ivn~s 128 (223)
+. .....+..++++..+++.+
T Consensus 246 -~~----~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 246 -PA----TFELCQELVAPGGHIANVG 266 (345)
T ss_pred -HH----HHHHHHHhccCCcEEEEec
Confidence 11 1245557788888888775
No 500
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.49 E-value=0.068 Score=45.32 Aligned_cols=89 Identities=16% Similarity=0.109 Sum_probs=61.5
Q ss_pred CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-cCCHHhhc-ccCCEEEEcCCCChhhhhccc
Q 027408 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD 111 (223)
Q Consensus 35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~ 111 (223)
.|.++.|.|. |.+|+.+++.++.+|.+|++.+++....+..+++|+.. ....+++. ...|+++-++.. .. .
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~----~~--~ 205 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGG----PQ--L 205 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCc----HH--H
Confidence 5899999999 99999999999999999998887654445555566421 11111222 247888766541 11 2
Q ss_pred HHHHhcCCCCcEEEEcCC
Q 027408 112 KDRIAKMKKGVLIVNNAR 129 (223)
Q Consensus 112 ~~~~~~mk~ga~ivn~sr 129 (223)
...++.|+++..+|+++.
T Consensus 206 ~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 206 ARALELLAPGGTVVSVGS 223 (305)
T ss_pred HHHHHHhcCCCEEEEEec
Confidence 567788888888888764
Done!