RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027408
(223 letters)
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 338 bits (869), Expect = e-118
Identities = 185/223 (82%), Positives = 206/223 (92%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 248
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
GVLIVNNARGAIM+ QAVVDA SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
TTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 309 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 351
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 325 bits (834), Expect = e-112
Identities = 106/221 (47%), Positives = 137/221 (61%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
M IL LVRN+LP H G WN+A AYDLE VGTV GRIG +L+RL PF+
Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 215
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
+L Y DR ++ +EKE + + M P CD+V +N PL +T M + + + K+
Sbjct: 216 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
G IVN ARG + D AV A SG +AGY+GDVW PQPAPKDHPWR MP MTPH+SG
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQ 221
TT+ AQ RYAAG +++L+ +F+G + IV+ G LA
Sbjct: 336 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALAGT 376
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 308 bits (792), Expect = e-106
Identities = 110/228 (48%), Positives = 152/228 (66%), Gaps = 7/228 (3%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
M +L+LVRNF+P H Q+I+ +W VA +A AYD+EGKT+ T+G GRIG +L+RL PFN
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 188
Query: 61 N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
LLY+D + E++ GA+ E+++ ++ + DIV VN PL T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
KG +VN ARGAI + V A SG + GY GDVW PQPAPKDHPWR M N AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308
Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQ 221
TPH SGTT+DAQ RYA G ++L+ +F G+ D+ Q+ I+ GE +
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK 356
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 194 bits (495), Expect = 2e-61
Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 8/212 (3%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+ L R+ V SG++ + L+ TVG +G G IG + RL+ + L
Sbjct: 112 AVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL 171
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
YH+ +D Q E+ G + + D +++ PL T + + + +A ++ G
Sbjct: 172 QYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGA 230
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-------WNPQPAPKDHPWRYMPNQAMT 175
L+VN RG+++D AV+ A G + GY+ DV +P D PN T
Sbjct: 231 LLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFT 290
Query: 176 PHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
PH+ +L + + GE
Sbjct: 291 PHIGSAVRAVRLEIERCAAQNILQALAGERPI 322
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 189 bits (482), Expect = 4e-60
Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 13/209 (6%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L +N L + + +G + L GK +G +G G IG+ + K F +
Sbjct: 93 LLAHAKNILENNELMKAGIFR----QSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRV 148
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+ + R +++ E + + D V++ PLT+KTRGM + +A +K +
Sbjct: 149 IAYTRS----SVDQNVDVISE-SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNL 203
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
IVN AR ++ ++ Y DVW +P + + N ++PHV+G
Sbjct: 204 TIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAGGM 260
Query: 183 IDAQLRYAAGV-KDMLDRYFKGEDFPVQN 210
+ A + + + +F+GE +
Sbjct: 261 SGEIMDIAIQLAFENVRNFFEGEGHHHHH 289
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 187 bits (476), Expect = 5e-59
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 14/211 (6%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L + + ++ G++ ++G+ V +G G IG + + L +
Sbjct: 94 LLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQV 150
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
R KE +F L+ L + V PL + TRG+ +A M +
Sbjct: 151 RGFSRT------PKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDA 204
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAPKDHPWRYMPNQAMTPHVSGT 181
+ VN R ++D V+ ++ DV W KD + +PN TP V+G
Sbjct: 205 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGG 264
Query: 182 TIDAQLRYAAG--VKDMLDRYFKGEDFPVQN 210
+ ++ L Y G +N
Sbjct: 265 YGNERVWRQMVMEAVRNLITYATGG--RPRN 293
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 187 bits (477), Expect = 5e-59
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 2/206 (0%)
Query: 3 ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
+L R G + + W + L+ KT+G G G IG+ L +R + F+ +
Sbjct: 112 LLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMD 171
Query: 62 LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
+ Y D + E A F + LD++L +N P T +TR F+K I + +G
Sbjct: 172 IDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 231
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
++VN ARG ++D + VV A +G +A DV+ +P + + +PN + PH+
Sbjct: 232 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA 290
Query: 182 TIDAQLRYAAGVKDMLDRYFKGEDFP 207
A+ A D++D F G D
Sbjct: 291 ATQAREDMAHQANDLIDALFGGADMS 316
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 187 bits (477), Expect = 1e-58
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 7/212 (3%)
Query: 3 ILILVRNFLPGHHQVISGEWN-----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQR-LK 56
IL + R +G+ + A++ G +G VG G I K + ++ +
Sbjct: 125 ILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVH 184
Query: 57 PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
L+Y+D D + EK GA+ + L+ + + D V V+ P + T + D+ A
Sbjct: 185 GLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFA 244
Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP 176
MK G IVN ARG ++ A++ A SG + DV +P M + +T
Sbjct: 245 AMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVTLTT 303
Query: 177 HVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPV 208
H+ G I+ + +DR+ +
Sbjct: 304 HIGGVAIETFHEFERLTMTNIDRFLLQGKPLL 335
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 187 bits (476), Expect = 2e-58
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 7/208 (3%)
Query: 3 ILILVRNFLPGHHQVISGEWN-----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
IL L R H + G + VA A + G+T+G +G GR+G+ + R K
Sbjct: 130 ILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKA 189
Query: 58 FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
F N+L++D + +E+ G + L +L D V ++ L E + + + +
Sbjct: 190 FGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 248
Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKDHPWRYMPNQAMTP 176
M++G +VN ARG ++D +A+ A G I G + DV +P + P + PN TP
Sbjct: 249 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 308
Query: 177 HVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
H + + A + + R G
Sbjct: 309 HAAWYSEQASIEMREEAAREIRRAITGR 336
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 185 bits (472), Expect = 2e-58
Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 4/201 (1%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+ + R ++ G W +LEGKT+G +G GRIG + + N+
Sbjct: 111 MFSVARKIAFADRKMREGVWAKK--EAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNI 168
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
L +D + + KE KF DL+T+L + D+V ++ PL E T + +++R+ MKK
Sbjct: 169 LLYDPY-PNEERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTA 226
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
+++N +RG ++DT A+V A G IAG DV+ +P PKDHP N +TPH+ +T
Sbjct: 227 ILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAST 286
Query: 183 IDAQLRYAAGVKDMLDRYFKG 203
++AQ R V + + + KG
Sbjct: 287 VEAQERAGVEVAEKVVKILKG 307
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 185 bits (472), Expect = 5e-58
Identities = 73/210 (34%), Positives = 116/210 (55%), Gaps = 8/210 (3%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRA-----YDLEGKTVGTVGCGRIGKLLLQRLKP 57
+L R+ + G V SGEW GVA+ YD+ GKT+G +G GRIG+ + +R K
Sbjct: 112 LLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKG 171
Query: 58 FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
FN +LY+ R ++E+E A+F+ L+ +L + D VV+ PLT +T + +++R+
Sbjct: 172 FNMRILYYSR-TRKEEVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKL 229
Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 177
MKK +++N ARG ++DT A+V A G IAG DV+ +P + + N +TPH
Sbjct: 230 MKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPH 288
Query: 178 VSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
+ + A+ A V L + +GE P
Sbjct: 289 IGSASFGAREGMAELVAKNLIAFKRGEIPP 318
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 185 bits (471), Expect = 7e-58
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 7/209 (3%)
Query: 3 ILILVRNFLPGHHQVISGEWN----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
I+ L+R + GEW + R L GK VG +G G IGK + +RL PF
Sbjct: 109 IINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPF 168
Query: 59 NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
L Y R +EKE A++ D+D +L K DIV++ PLT T + +++R+ K+
Sbjct: 169 GVKLYYWSR-HRKVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKL 226
Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
+ G +VN RGA++D +AV +A G + GY+ DV+ +P + ++Y +TPH
Sbjct: 227 E-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHY 285
Query: 179 SGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
+G ++AQ + L + +GE
Sbjct: 286 AGLALEAQEDVGFRAVENLLKVLRGEVPE 314
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 180 bits (458), Expect = 5e-56
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 5/208 (2%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L +VR + + L G+ + G G+IG+ L + ++
Sbjct: 106 MLSVVRGYHAAWLNQRGARQWALPMTTS--TLTGQQLLIYGTGQIGQSLAAKASALGMHV 163
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+ + P F L + +V PLT T +F + + K+
Sbjct: 164 IGVNT-TGHPADHFHETVAFT-ATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQP 221
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
+++N RG +DT A++ A ++ + DV P+P P DHP + +TPH+SG
Sbjct: 222 MLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQI 281
Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFPVQN 210
+ ++ K V+N
Sbjct: 282 AHFRATVFPIFAANFAQFVKDGT-LVRN 308
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 178 bits (455), Expect = 2e-55
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 2/206 (0%)
Query: 3 ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
+L R +V +G W + Y L TVG +G GRIG+ + +RLKPF
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 180
Query: 62 LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
+ + P+ E A+F + + D +VV LT T G+ +KD KMK+
Sbjct: 181 RFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKET 239
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
+ +N +RG +++ + A +SG IA DV +P+P P +HP + N + PH+
Sbjct: 240 AVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSA 299
Query: 182 TIDAQLRYAAGVKDMLDRYFKGEDFP 207
T + + + L +GE P
Sbjct: 300 THRTRNTMSLLAANNLLAGLRGEPMP 325
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 177 bits (452), Expect = 9e-55
Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAY--------DLEGKTVGTVGCGRIGKLLLQR 54
++ R + G W +G+ L+G+T+G G G+IG+L+
Sbjct: 119 VMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGY 178
Query: 55 LKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114
+ F N+L R + + + G E D + + D++ V+ L ++TR +
Sbjct: 179 GRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD 237
Query: 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 174
+ +MK L VN +R +++ +V A + G + DV+ +P + H M N
Sbjct: 238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC 297
Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
TPH+ ++ Y + +G
Sbjct: 298 TPHIGYVERESYEMYFGIAFQNILDILQGN 327
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 176 bits (448), Expect = 2e-54
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
I+ L R + G+W + +L GKT+G +G GRIG+ + R++ F
Sbjct: 134 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKT 191
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+ +D + + P++ G + L+ + P CD + V+TPL T G+ + + A+ KKGV
Sbjct: 192 IGYDPI-ISPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV 249
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
+VN ARG I+D A++ A SG AG + DV+ +P P+D N PH+ +T
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGAST 308
Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFPVQN 210
+AQ R + KG+ +
Sbjct: 309 KEAQSRCGEEIAVQFVDMVKGK--SLTG 334
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 174 bits (444), Expect = 5e-54
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 8/204 (3%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
++ R SG + +L GKT+G VG GRIG + +
Sbjct: 113 MIAAARKMYTSMALAKSGIFK----KIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKV 168
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
L +D + + ++ AK L+ +L D++ ++ +++ + + D + MK V
Sbjct: 169 LAYDIL-DIREKAEKINAKAV-SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNV 226
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH--PWRYMPNQAMTPHVSG 180
+IVN +R ++ +A++D G + Y+ DV+ +P ++ +T H+
Sbjct: 227 IIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGA 286
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGE 204
T +AQ R A L K
Sbjct: 287 QTKEAQKRVAEMTTQNLLNAMKEL 310
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 174 bits (443), Expect = 5e-54
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 9/206 (4%)
Query: 3 ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
+L + R + G G W DL+G T+G VG GRIG+ + +R F
Sbjct: 110 LLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMR 169
Query: 62 LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
++YH R K F L+ +L + D+V ++TPLT +T + +++R+ MK+G
Sbjct: 170 VVYHART------PKPLPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRG 222
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
+++N ARGA++DT+A+V+A GH+ G DV +P+P P HP +PN +TPH+
Sbjct: 223 AILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSA 281
Query: 182 TIDAQLRYAAGVKDMLDRYFKGEDFP 207
+ R A + L +G + P
Sbjct: 282 GRTTRERMAEVAVENLLAVLEGREPP 307
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 174 bits (442), Expect = 9e-52
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 5/205 (2%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L R + W + ++ ++ GKTVG VG GRIG+L+ QR+ F +
Sbjct: 111 LLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYV 168
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+ +D + P + G + LD +L + D + V+ P T +T G+ DK+ +AK K GV
Sbjct: 169 VAYDPY-VSPARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 226
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
+IVN ARG ++D A+ DA + GH+ DV+ +P D P + +TPH+ +T
Sbjct: 227 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGAST 285
Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFP 207
+AQ R V + + GE P
Sbjct: 286 AEAQDRAGTDVAESVRLALAGEFVP 310
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 168 bits (429), Expect = 1e-51
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 19/226 (8%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
IL LV+ +V ++ A +L T+G +G GRIG + F +
Sbjct: 109 ILTLVKRLKRIEDRVKKLNFSQDS-EILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKV 167
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
L +D VK L+++ G + LD +L + D++ ++ P T++T M +++RI+ MK GV
Sbjct: 168 LCYDVVK-REDLKEK-GCVYT-SLDELLKESDVISLHVPYTKETHHMINEERISLMKDGV 224
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQPAPKDHPWRY--- 168
++N ARG ++DT A+ A G +G DV + A +
Sbjct: 225 YLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELA 284
Query: 169 -MPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIV 213
N +TPH++ T + R ++ + KG+ ++ V
Sbjct: 285 CKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFV 330
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 167 bits (426), Expect = 3e-51
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 21/227 (9%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
++R +V + A ++ + VG VG G IG++ +Q ++ F +
Sbjct: 115 AARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKV 172
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+ +D + +P+LEK+ G + LD + + D++ ++ P M + + IAKMK+ V
Sbjct: 173 ITYDIFR-NPELEKK-GYYVD-SLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDV 229
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-------------NPQPAPKDHPWRYM 169
+IVN +RG ++DT AV+ SG I GY+ DV+ P +
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 289
Query: 170 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG 216
PN +TP + T A D +G++ VK G
Sbjct: 290 PNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE---TPVKVG 333
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 168 bits (427), Expect = 4e-51
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 4/203 (1%)
Query: 3 ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
+L R V SG W L G+ +G G GRIG+ + R + F
Sbjct: 139 VLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLA 198
Query: 62 LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
+ YH+R ++ E GA + + LD++L DI ++ P + +G D DRIAK+ +G
Sbjct: 199 IHYHNRTRLSH--ALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
+++N +RG +++ A+++A S H+ DV+ +PA D +R + N +TPH+
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSA 315
Query: 182 TIDAQLRYAAGVKDMLDRYFKGE 204
T + + + ++ + +
Sbjct: 316 THETRDAMGWLLIQGIEALNQSD 338
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 169 bits (431), Expect = 4e-51
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 10/206 (4%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L+L+R + + G N +A +++ GK +G +G G IG L + +
Sbjct: 114 LLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 171
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
++D +L + + L +L D+V ++ P T+ M I+ MK G
Sbjct: 172 YFYDIE---NKLPLGNATQVQ-HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 227
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHV 178
L++N +RG ++D A+ DA +S H+AG + DV+ +PA P P N +TPH+
Sbjct: 228 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 287
Query: 179 SGTTIDAQLRYAAGVKDMLDRYFKGE 204
G+T +AQ V L +Y
Sbjct: 288 GGSTQEAQENIGLEVAGKLIKYSDNG 313
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 167 bits (426), Expect = 2e-50
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 10/206 (4%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
I++L+R P +G W A + ++ GKT+G VG G IG + + +
Sbjct: 125 IIMLMRRIFPRSVSAHAGGWE--KTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTV 182
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
Y+D K LD +L D+V ++ P ++ T + + ++ KMKKG
Sbjct: 183 RYYDTSDKLQYG----NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGA 238
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK----DHPWRYMPNQAMTPHV 178
++NNARG+ +D +A+ GH+AG + DV+ +PA P + + N +TPH+
Sbjct: 239 FLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHI 298
Query: 179 SGTTIDAQLRYAAGVKDMLDRYFKGE 204
G+T +AQ R V L Y
Sbjct: 299 GGSTEEAQERIGTEVTRKLVEYSDVG 324
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 165 bits (419), Expect = 4e-50
Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 18/220 (8%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
L L+RN Q+ +G++ AG + +L +TVG +G G IG++ ++ K F
Sbjct: 111 TDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGA 169
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
++ +D P + L+ + + D++ ++ P E+ + ++ MK
Sbjct: 170 KVIAYDPY---PMKGDHPDFDYV-SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP 225
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-------------NPQPAPKDHPWR 167
G +++N AR ++DTQA++ SG +AG D + P
Sbjct: 226 GAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELL 285
Query: 168 YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
MPN ++PH++ T A L + +
Sbjct: 286 GMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETS 325
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 163 bits (414), Expect = 2e-49
Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 19/219 (8%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
++L+R+ + + V + ++ TVG VG GRIG++ Q +
Sbjct: 114 AMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATV 172
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+ D E LD +L K DI+ ++ P ++ + +D + KMK G
Sbjct: 173 IGEDVF---EIKGIEDYCTQV-SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGA 228
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQPAPKDHPWRYM-- 169
++VN ARG ++DT+AV++A SG + GY DV Q + +
Sbjct: 229 ILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDL 288
Query: 170 -PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
P +TPH+ T +A L + D P
Sbjct: 289 YPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCP 327
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 161 bits (410), Expect = 9e-49
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 6/205 (2%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L ++R G V G W + +GK +G +G G+IG+ L R + F ++
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSV 197
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
Y +R + + + D++ V + T+ + D + +
Sbjct: 198 RYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEG 252
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
++VN ARG ++D A+++A SG IAG DV+ +PA + PN + PH T
Sbjct: 253 IVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSAT 311
Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFP 207
++ ++ V L +F GE P
Sbjct: 312 VETRMAMGKLVLANLAAHFAGEKAP 336
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 159 bits (404), Expect = 6e-48
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 7/205 (3%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
IL ++R V G W G GK VG +G GRIG + +R + F+C +
Sbjct: 132 ILAVLRRICECDKYVRRGAWK-FGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
Y R K T + + + DI+VV PLT +T + +++ I +
Sbjct: 191 SYFSRSKKP-----NTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
+++N RG +D +V A G + G DV+ +P + N + PHV T
Sbjct: 246 VLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGT 304
Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFP 207
++ + A V L+ +F G+
Sbjct: 305 VETRKVMADLVVGNLEAHFSGKPLL 329
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 157 bits (399), Expect = 1e-46
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 11/177 (6%)
Query: 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
+ L +T+G VG G +G L RL+ L D P+ + F LD ++
Sbjct: 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDP----PRAARGDEGDFR-TLDELVQ 169
Query: 92 KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
+ D++ +TPL + KT + D+ I ++K G +++N RG ++D A++ ++G
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
DVW +P + + T H++G T++ + R V + + E
Sbjct: 230 LSVVLDVWEGEP-DLNVALLEAVDIG-TSHIAGYTLEGKARGTTQVFEAYSAFIGRE 284
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 155 bits (395), Expect = 4e-46
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 29 YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT 88
R DL +T G VG G++G L++ L+ +L D P+ +E +F L+
Sbjct: 109 VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDP----PRQAREPDGEFV-SLER 163
Query: 89 MLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144
+L + D++ ++TPL TR + D+ R+A ++ G +VN +RGA++D QA+
Sbjct: 164 LLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEG 223
Query: 145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
G + DVW +P P TPH++G +++ +LR A + +
Sbjct: 224 GADLEVALDVWEGEPQA--DPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIA 281
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 150 bits (380), Expect = 2e-44
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 10/208 (4%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
+L L+R Q W ++ L+G+T+ +G G IG+ + K F
Sbjct: 109 GHLLSLMRQLPLYREQQKQRLWQ----SHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGM 164
Query: 61 NLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
+L R + ++ L+ ML + D++V P T +T +F R K
Sbjct: 165 KVLGVSRSGRERAGFDQVYQ---LPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCK 221
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
G ++ N RG ++ ++ A +G + DV+ +P P D P PN +TPH S
Sbjct: 222 PGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNS 281
Query: 180 GTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
+ + A R+ G+
Sbjct: 282 AYSFPDDV--AQIFVRNYIRFIDGQPLD 307
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 149 bits (378), Expect = 4e-44
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 10/206 (4%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L R F W Y E +VG +G G +G + + L+ + L
Sbjct: 110 VLHWFRRFDDYQALKNQALWK----PLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPL 165
Query: 63 LYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
R K P +E G E+L L + +++ P T +T G+ + + + ++ G
Sbjct: 166 RCWSRSRKSWPGVESYVG---REELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDG 222
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
++N ARG + ++ A SG + G DV++ +P P++ P P AMTPH++
Sbjct: 223 AYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAV 282
Query: 182 TIDAQLRYAAGVKDMLDRYFKGEDFP 207
T A+ + + + KGE
Sbjct: 283 TRPAEA--IDYISRTITQLEKGEPVT 306
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 80.0 bits (197), Expect = 4e-18
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 17/165 (10%)
Query: 5 ILVRNFLPGHHQVISGEWNVAGVAYRAYD--LEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
++ R+ + ++ + + E + +A + D + G V +G GR+G + ++ +
Sbjct: 123 LMERDDIAIYNSIPTAEGTIM-MAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKV 181
Query: 63 LYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
R E G + L D+ + P + + +A+M
Sbjct: 182 KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPAL-----VVTANVLAEMPS 236
Query: 121 GVLIVNNARG--AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD 163
+++ A A + + G G V APK
Sbjct: 237 HTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIV-----APKT 276
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 40.2 bits (94), Expect = 3e-04
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 18/75 (24%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEK------ETGAKFEEDLDT 88
G G G G +L+ + +H + DP + E G L
Sbjct: 5 FGICGLGFAGSVLMAPA------MRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAE 58
Query: 89 ML--PKCDIVVVNTP 101
M+ + D V + +P
Sbjct: 59 MMQHVQMDAVYIASP 73
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 38.5 bits (90), Expect = 0.001
Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 19/75 (25%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK------ETGAKFEEDLDT 88
V +G GR ++ +++K+ +K + ++
Sbjct: 8 VAAIGLGRWAYVMAD-------AYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEA 60
Query: 89 ML--PKCDIVVVNTP 101
+L ++V++ P
Sbjct: 61 LLAREDVEMVIITVP 75
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 38.1 bits (89), Expect = 0.001
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 39 VGTVGCGRIGKLLLQRLK--PFNCNL-----LYHDRVKMDPQLEKETGAKFEEDLDTML- 90
VGCGRI L+ L + +K + TGA+ L ML
Sbjct: 16 FALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALK---AAVERTGARGHASLTDMLA 72
Query: 91 -PKCDIVVVNTP 101
DIV++ TP
Sbjct: 73 QTDADIVILTTP 84
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 37.1 bits (87), Expect = 0.001
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 14/92 (15%)
Query: 19 SGEWNVAGVAYRAYDL----EGKTVGTVGCGRIGKLLLQRLKPFNCNLLY----HDRVKM 70
S + YD+ G + VG G + + + D V+
Sbjct: 1 SNA-GKVSIPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVR- 58
Query: 71 DPQLEKETGAKFE--EDLDTMLPKCDIVVVNT 100
++ ++ D+D+++ D+++ T
Sbjct: 59 --AFAEKYEYEYVLINDIDSLIKNNDVIITAT 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 27/128 (21%)
Query: 9 NFLPGHH---QVISGEWNVAGVAYRAYD-LEGK--TVGTVGCGRIGKL-LLQRLKPFNCN 61
+ + GHH + + + + LE K T L LQ+LK
Sbjct: 475 SHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK----- 528
Query: 62 LLYHDRV-KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
Y + DP+ E+ + LPK + ++ + T D RIA M +
Sbjct: 529 -FYKPYICDNDPKYER-----LVNAILDFLPKIEENLICSKYT-------DLLRIALMAE 575
Query: 121 GVLIVNNA 128
I A
Sbjct: 576 DEAIFEEA 583
Score = 32.5 bits (73), Expect = 0.12
Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 53/145 (36%)
Query: 19 SGEWNVAGVAYRAYDLEGKTVG-----TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ 73
SG+ VA +Y ++ K + + +L+ L+ LLY +DP
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQ----IDPN 212
Query: 74 LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133
D + + + +++ E R + K + L+ ++
Sbjct: 213 WTSR------SDHSSNIK----LRIHSIQAELRRLLKSKPY-----ENCLL-------VL 250
Query: 134 DTQAVVDACSSGHIAGYSGDVWNPQ 158
+V N +
Sbjct: 251 L------------------NVQNAK 257
Score = 32.5 bits (73), Expect = 0.13
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 29/134 (21%)
Query: 81 KFEEDLD---------TMLPK--CDIVVVNTPLTEKTRGMFD------KDRIAKMKKGVL 123
F ++ D ++L K D ++++ T +F ++ + K + VL
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 124 IVNNARGAIMDTQAVVDACSSGHIAGYSGDV---WN-PQPAPKDHPWRYMPNQAMTPHVS 179
+N +M S Y +N Q K + R P + +
Sbjct: 88 RIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 180 GTTIDAQLRYAAGV 193
+LR A V
Sbjct: 146 ------ELRPAKNV 153
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 36.9 bits (86), Expect = 0.003
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDP------QLEKETGAKFEEDLDT 88
+G +G G I + L +R + P ++ + + +++
Sbjct: 9 MGMIGLGSIAQKAYLP------ILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIES 62
Query: 89 MLPKCDIVVVNTP 101
+ KCD + +++
Sbjct: 63 LAKKCDCIFLHSS 75
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 36.2 bits (84), Expect = 0.005
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 16/73 (21%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEK------ETGAKFEEDLDT 88
+G VG G I + + L P K + + L +
Sbjct: 8 IGVVGLGGIAQKAWLPV------LAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSS 61
Query: 89 MLPKCDIVVVNTP 101
+ CD V V++
Sbjct: 62 LAASCDAVFVHSS 74
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 35.7 bits (83), Expect = 0.007
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 19/75 (25%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLE------KETGAKFEEDLDT 88
+ G GRIG + N+ + ++ DP +E + GA+ D
Sbjct: 7 IALFGAGRIGHVHAA-------NIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDE 59
Query: 89 ML--PKCDIVVVNTP 101
+ D +V+ +P
Sbjct: 60 VFARDDIDGIVIGSP 74
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 35.8 bits (83), Expect = 0.007
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 18/74 (24%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK-----ETGAKFEEDLDTM 89
+ VG G +G + D +++ D EK + G K E + +
Sbjct: 8 LVIVGYGGMGSYHVT-------LASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAV 60
Query: 90 L--PKCDIVVVNTP 101
L K D V++ TP
Sbjct: 61 LADEKVDAVLIATP 74
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 35.0 bits (81), Expect = 0.014
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------ETGAKFEEDLDTML 90
+ +G + L+ L C++ + L K K + ML
Sbjct: 5 ICVIGSSGHFRYALEGLDE-ECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEML 63
Query: 91 --PKCDIVVVNTP 101
K DI+V+NT
Sbjct: 64 EKEKPDILVINTV 76
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 34.6 bits (80), Expect = 0.020
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 51 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110
+++ HD P + G + ++L+ ++ D +VV + +
Sbjct: 378 YRDLCLKAGASVMVHD-----PYVVNYPGVEISDNLEEVVRNADAIVVLAGHSAYSSLKA 432
Query: 111 DKDRIAKMKKGVLIV 125
D + K +I+
Sbjct: 433 DWAKKVSAKANPVII 447
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 34.2 bits (79), Expect = 0.021
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 39 VGTVGCGRIGK-----LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--P 91
+G G+ +L R ++ ++ K + Q + F DLD +L P
Sbjct: 5 CAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDP 64
Query: 92 KCDIVVVNTP 101
+VVV T
Sbjct: 65 DVKLVVVCTH 74
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 34.1 bits (79), Expect = 0.028
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-----HDRVKMDPQLEKETGAKFE--ED 85
L KTV VG G +GK + + L + ++R +L ++ G + ++
Sbjct: 164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAV---ELARDLGGEAVRFDE 220
Query: 86 LDTMLPKCDIVVVNT 100
L L + D+VV T
Sbjct: 221 LVDHLARSDVVVSAT 235
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 33.8 bits (78), Expect = 0.030
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEKET-------GAKFEEDLD 87
+G +G G+ ++ + +++ D + ++ G F DL+
Sbjct: 5 MGFIGFGKSANRYHLPY------VMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLN 58
Query: 88 TML--PKCDIVVVNTP 101
+L P+ +++ + TP
Sbjct: 59 ELLTDPEIELITICTP 74
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 33.5 bits (77), Expect = 0.043
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 39 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PK 92
G G G++ + F + +R K + E+ A + P+
Sbjct: 8 TGLAAFGMSGQVFHAPFISTNPHFELYKIV-ERSK-ELSKERYPQASIVRSFKELTEDPE 65
Query: 93 CDIVVVNTP 101
D++VVNTP
Sbjct: 66 IDLIVVNTP 74
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 33.1 bits (76), Expect = 0.049
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 17/73 (23%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK----ETGAKFEEDLDTML 90
+ +G GR GK ++ + + + G E D +++
Sbjct: 13 LALIGAGRWGKNYIR-------TIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVV 65
Query: 91 --PKCDIVVVNTP 101
P+ + V++ TP
Sbjct: 66 SAPEVEAVIIATP 78
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 33.1 bits (76), Expect = 0.050
Identities = 7/69 (10%), Positives = 15/69 (21%), Gaps = 6/69 (8%)
Query: 39 VGTVGCGRIGKL-LLQRLKPFNCNLLY---HDRVKMDPQLEKETGAKFEEDLDTML--PK 92
+G + Q+L L D F + ++
Sbjct: 7 FAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDAS 66
Query: 93 CDIVVVNTP 101
D++
Sbjct: 67 IDLIACAVI 75
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 32.9 bits (75), Expect = 0.060
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 16/72 (22%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEKETGAKFE---EDLDTML- 90
V VG GR G + L+ +L +E G+ E L+ L
Sbjct: 10 VVVVGVGRAGSVRLR-------DLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALR 62
Query: 91 -PKCDIVVVNTP 101
+ D+ + +
Sbjct: 63 SQEIDVAYICSE 74
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 32.9 bits (76), Expect = 0.065
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 19/111 (17%)
Query: 33 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLY---HDRVKMDPQLEKETGAKFEE-- 84
++G +G R LL+ L F L+Y ++ ++ E +E
Sbjct: 146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVE 205
Query: 85 DLDTMLPKCDIVVV---------NTPLTEKTRGMF--DKDRIAKMKKGVLI 124
+ ++ + D++ V + EK +G + D KMKK +I
Sbjct: 206 NPFEVINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSII 256
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 32.6 bits (75), Expect = 0.10
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 71 DPQLEKET--GAKFEEDLDTMLPKCDIVVVNTP------LTEK--TRGMFDKD 113
+P ++++ ++ DL+ + D+++ N + +K TR +F D
Sbjct: 372 EPVMQEDEFFNSRVVRDLNAFKQEADVIISNRMAEELADVADKVYTRDLFGND 424
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 32.3 bits (74), Expect = 0.11
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 39 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PK 92
+ +G G +GK L++ + N + R + + + + P
Sbjct: 10 IALIGYGFVGKTFHAPLIRSVPGLNLAFVA-SRDE-EKVKRDLPDVTVIASPEAAVQHPD 67
Query: 93 CDIVVVNTP 101
D+VV+ +P
Sbjct: 68 VDLVVIASP 76
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 32.3 bits (74), Expect = 0.11
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 19/76 (25%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK--ETGAKFE-----EDLD 87
VG VG G + L +LL +++ D LE+ +++
Sbjct: 8 VGLVGIGAQMQENLLP------SLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVP 61
Query: 88 TML--PKCDIVVVNTP 101
ML D VV+ P
Sbjct: 62 AMLNQVPLDAVVMAGP 77
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 31.9 bits (73), Expect = 0.15
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 20/77 (25%)
Query: 39 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQLEK--------ETGAKFEEDL 86
+G +G G IGK + +L ++ V D E + A +
Sbjct: 5 IGVIGTGAIGKEHINRITNKLS--GAEIVA---V-TDVNQEAAQKVVEQYQLNATVYPND 58
Query: 87 DTML--PKCDIVVVNTP 101
D++L D V+V +
Sbjct: 59 DSLLADENVDAVLVTSW 75
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 31.5 bits (72), Expect = 0.17
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 16/73 (21%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK----ETGAKFEEDLDTML 90
VG +G G K L ++ +++ K D +
Sbjct: 10 VGLLGYGYASKTFHAPL------IMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLF 63
Query: 91 --PKCDIVVVNTP 101
P D++V+ TP
Sbjct: 64 NDPSIDLIVIPTP 76
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 31.6 bits (71), Expect = 0.18
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 39 VGTVGCGRIGKLLLQRLKPF-NCNL-----LYHDRVKMDPQLEKETGAK-------FEED 85
+ + G G+ ++ + + + V ++ K+ G K +D
Sbjct: 23 IAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDD 82
Query: 86 LDTML--PKCDIVVVNTP 101
ML D V V++P
Sbjct: 83 YKNMLKDKNIDAVFVSSP 100
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 31.5 bits (72), Expect = 0.20
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 39 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEEDLDTML-- 90
VG +G G G + LL L + + + A+ +L+ +
Sbjct: 8 VGILGYGLSGSVFHGPLLDVLD--EYQI--SKIMTSRTEEVKRDFPDAEVVHELEEITND 63
Query: 91 PKCDIVVVNTP 101
P ++V+V TP
Sbjct: 64 PAIELVIVTTP 74
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 31.1 bits (71), Expect = 0.27
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 20/76 (26%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDP------QLEKETGA-KFEEDLD 87
+G +G GRIG + + NL D D +++++ G K +D
Sbjct: 5 IGVIGLGRIGTIHAE-------NLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPH 57
Query: 88 TML--PKCDIVVVNTP 101
++ P D V+V +
Sbjct: 58 ELIEDPNVDAVLVCSS 73
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 30.7 bits (70), Expect = 0.30
Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 17/75 (22%)
Query: 39 VGTVGCGRIGKL----LLQRLKPFNCNLLY-----HDRVKMDPQLEKETGAK-FEEDLDT 88
+G GR+G+ L+ +++ L+ ++++ + E G + +
Sbjct: 11 AAIIGLGRLGERHARHLVNKIQ--GVKLVAACALDSNQLE---WAKNELGVETTYTNYKD 65
Query: 89 ML--PKCDIVVVNTP 101
M+ D + + P
Sbjct: 66 MIDTENIDAIFIVAP 80
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 30.6 bits (70), Expect = 0.34
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 51 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT------PLTE 104
++ LK + ++ ++ + E E + DL+ + +I+V N +
Sbjct: 334 VIDILKSKDIKIIIYEPMLNKL--ESEDQSVLVNDLENFKKQANIIVTNRYDNELQDVKN 391
Query: 105 K--TRGMFDKD 113
K +R +F +D
Sbjct: 392 KVYSRDIFGRD 402
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 30.7 bits (70), Expect = 0.35
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 29/100 (29%)
Query: 76 KETGAKFEEDLDTMLPKCDIVV-VNTPLTEKTRGMFDKDRIAKMKKGVLIVN-------- 126
GA L + D+V V P D +A +K+G +++
Sbjct: 51 TAAGATIASTAAQALSQADVVWKVQRP----MTAEEGTDEVALIKEGAVLMCHLGALTNR 106
Query: 127 ------NARGAI---MD-----TQA-VVDACSS-GHIAGY 150
R M+ ++A +D SS ++AGY
Sbjct: 107 PVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGY 146
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 30.6 bits (70), Expect = 0.39
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 21/113 (18%)
Query: 33 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLY--HDRVKMDPQLE---KETGAKFEE 84
++G +G +G GR L + L ++ L + ++M + +E G K E
Sbjct: 152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVE 211
Query: 85 --DLDTMLPKCDIVVV---------NTPLTEKTRGMF--DKDRIAKMKKGVLI 124
L+ ++ K D++ V + K +G + + + K K + I
Sbjct: 212 TTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRI 264
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB:
1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A*
1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A*
2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Length = 310
Score = 30.2 bits (69), Expect = 0.48
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 21/113 (18%)
Query: 33 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLY---HDRVKMDPQLE---KETGAKFE 83
L+ V VG GR L Q L F+ N Y D + M + E G +
Sbjct: 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWS 210
Query: 84 E--DLDTMLPKCDIVVV--------NTPLTEKTRGMF--DKDRIAKMKKGVLI 124
++ ++ + DI+ + + + F + K + +
Sbjct: 211 LHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKV 263
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Length = 393
Score = 30.1 bits (68), Expect = 0.56
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 39 VGTVGCGRIGKLLLQ--RLKPFNCNLLYHDRVKM----DPQLEKETGAKF-----EEDLD 87
+G +G G +GK + R+ + L + +F D
Sbjct: 28 IGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWR 87
Query: 88 TML--PKCDIVVVNTP 101
++ P+ D+V V TP
Sbjct: 88 ALIADPEVDVVSVTTP 103
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 29.8 bits (67), Expect = 0.63
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 23/102 (22%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEK-----ETGAK--FEED 85
+ G V +G GR G + + N VK E G ++
Sbjct: 155 IHGSQVAVLGLGRTGMTIARTFAALGAN------VKVGARSSAHLARITEMGLVPFHTDE 208
Query: 86 LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIV 125
L + D + +NT + + ++ ++ M LI+
Sbjct: 209 LKEHVKDID-ICINTIPSM------ILNQTVLSSMTPKTLIL 243
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 29.6 bits (67), Expect = 0.70
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 20/77 (25%)
Query: 39 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQLEK--------ETGAKFEEDL 86
G VG G IG L + ++ V D + AK D
Sbjct: 26 AGIVGIGMIGSDHLRRLANTVS--GVEVVA---V-CDIVAGRAQAALDKYAIEAKDYNDY 79
Query: 87 DTML--PKCDIVVVNTP 101
++ ++V++
Sbjct: 80 HDLINDKDVEVVIITAS 96
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 29.3 bits (66), Expect = 0.94
Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 17/74 (22%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK---MDPQLEK--ETGAKFE-----EDLDT 88
+ +G G I + L ++ + ++ D
Sbjct: 5 IAMIGLGDIAQKAYLP------VLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRD 58
Query: 89 ML-PKCDIVVVNTP 101
+L D V+++
Sbjct: 59 VLQYGVDAVMIHAA 72
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 28.9 bits (65), Expect = 1.3
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 14/70 (20%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTML---P 91
+ VG G+I + + P + + K E G ++ ML P
Sbjct: 28 LAIVGVGKIVR---DQHLPS---IAKNANFKLVATASRHGTVE-GVNSYTTIEAMLDAEP 80
Query: 92 KCDIVVVNTP 101
D V + P
Sbjct: 81 SIDAVSLCMP 90
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG,
protein structure initiative, joint center for
structural G oxidoreductase; HET: NAD; 1.90A
{Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB:
1h2h_A*
Length = 253
Score = 28.4 bits (63), Expect = 1.7
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 97
V +G G IGK L++ + D + G ++ + VV
Sbjct: 15 VLIIGMGNIGKKLVELGN-------FEKIYAYDRISKDIPGVVRLDEFQ-VPSDVSTVV 65
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 28.6 bits (63), Expect = 1.7
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 38 TVGTVGCGRIGKLLLQRLKPFNCNLL-YHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDI 95
+ +G G + L + L ++ + R + +L ++ A++ DL + P +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 96 VVVNTP 101
+V+
Sbjct: 72 YIVSLK 77
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport,
flavoprotein, FMN, transport; HET: FMN; 2.00A
{Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A*
3kap_A* 3kaq_A*
Length = 148
Score = 27.6 bits (62), Expect = 2.2
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 28 AYRAYDLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKMD--PQLEKE 77
+ L G+ V G + +R K ++ + +KM+ + E
Sbjct: 77 EFDRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATII-AEGLKMEGDASNDPE 135
Query: 78 TGAKFEEDLDTML 90
A F ED+ L
Sbjct: 136 AVASFAEDVLKQL 148
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 28.0 bits (63), Expect = 2.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 22 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK 56
A + A+D + + +G G +G L L LK
Sbjct: 159 LEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLK 193
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis,
NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A
{Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 27.6 bits (62), Expect = 2.9
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 14 HHQVISGEWNVAGV--AYRAYDLEGKTVGTVGCGRIGKLLLQRL------KPFNCNLLYH 65
HH + +GV + +VG +G G++ L +
Sbjct: 2 HHH----HHHSSGVDLGTENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSP 57
Query: 66 DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 98
D ++ G K + D++ +
Sbjct: 58 DMDLATVSALRKMGVKLTPHNKETVQHSDVLFL 90
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 27.4 bits (60), Expect = 3.1
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVV 97
VG +G G IGK L + L+ + +D + E K +D L + D+ V
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGFEIAA----ILDVRGEH---EKMVRGIDEFLQREMDVAV 55
Query: 98 VNTP 101
Sbjct: 56 EAAS 59
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco,
photosynthesis, alpha/beta barrel, N-methylmethioni
translational modification, lyase; HET: KCX CAP; 1.35A
{Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A*
3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L
1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A*
1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...
Length = 477
Score = 27.7 bits (61), Expect = 3.2
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 174 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQ 221
M+P T A + + AGVKD Y+ E I+ A + PQ
Sbjct: 1 MSPQ---TETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQ 45
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 27.5 bits (62), Expect = 4.1
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Query: 19 SGEWNVAGVAYRAYDLEGKTVGTVGCG 45
+G W + D G+ VG +G G
Sbjct: 174 TGNWP-----HEPVDFSGQRVGVIGTG 195
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD;
1.50A {Pseudomonas aeruginosa}
Length = 318
Score = 27.2 bits (60), Expect = 4.3
Identities = 23/178 (12%), Positives = 45/178 (25%), Gaps = 40/178 (22%)
Query: 37 KTVGTVGC-GRIGKLLLQRLKPFNCNLL-----YHDRVKMDPQLEK-ETGAKFE-----E 84
K +G G I ++ +K L+ +D + E +FE
Sbjct: 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHA 63
Query: 85 DLDTML--PKCDIVVVNTP------------------LTEK--------TRGMFDKDRIA 116
D V + +P + EK + +R
Sbjct: 64 SNLKRDSATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123
Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 174
+ ++ AI+ + V S H + W+ P ++
Sbjct: 124 DKRLYNILQLRHHQAIIALKDKVAREKSPHKYEVDLTYITSRGNWYLKSWKGDPRKSF 181
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 27.3 bits (61), Expect = 4.4
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 21/115 (18%)
Query: 56 KPFNCNLLYHDRVKMDP---------------QLEKETGAKFEEDLDTMLPKCDIVV-VN 99
+PF N+ + E E G D K +++
Sbjct: 63 RPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDP 122
Query: 100 TPLTEKTRGMFDKDRIAKMKK-GVLIVNNA---RGAIMDTQAVVDA-CSSGHIAG 149
P+ G+ D++ IA++++ G L + A A A DA + G AG
Sbjct: 123 VPVVSFHFGVPDREVIARLRRAGTLTLVTATTPEEARAVEAAGADAVIAQGVEAG 177
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE,
anisotropic refinement, redox protein; HET: FMN; 1.30A
{Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A*
1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A*
1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A*
1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Length = 147
Score = 26.4 bits (59), Expect = 4.6
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 30 RAYDLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKMD 71
+G+ V GCG + ++LK ++ D +++D
Sbjct: 78 EETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQ-DGLRID 126
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 26.9 bits (60), Expect = 4.6
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 95
K V G G++G L + L+ + DR +++L D+
Sbjct: 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED-------------WAVAESILANADV 68
Query: 96 VVVNTPLTEKTRGMFDKDRIA-KMKKGVLIV 125
V+V+ P+ T ++ + + + +L+
Sbjct: 69 VIVSVPI-NLTLETIER--LKPYLTENMLLA 96
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 27.2 bits (61), Expect = 4.7
Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 31/138 (22%)
Query: 37 KTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPK 92
KT+ G G IG L +K + ++ ++R + E G + D
Sbjct: 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAAL 66
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT----QAVVDACSS---- 144
D++++ P+ +KT +K+ V+ I D +V A
Sbjct: 67 ADVIILAVPI-KKTIDFIKILADLDLKEDVI--------ITDAGSTKYEIVRAAEYYLKD 117
Query: 145 -------GH-IAG--YSG 152
H +AG SG
Sbjct: 118 KPVQFVGSHPMAGSHKSG 135
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 27.0 bits (59), Expect = 4.9
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 9 NFLPGHHQVISGEWNVAGVAYRAYDL 34
NFL ++ +W +G+ +DL
Sbjct: 184 NFLDTGERMWIVDWEYSGMNDPLWDL 209
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 26.8 bits (59), Expect = 5.1
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155
V + TP+++ + ++ + I+ G + ++ A GHI Y
Sbjct: 53 VEIETPVSKARAKVIAGKKLG----VIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQT 108
Query: 156 N 156
Sbjct: 109 L 109
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium
falciparum}
Length = 262
Score = 26.7 bits (60), Expect = 5.2
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
+E +G +G G++G L + N N++ + + +K T + + + C
Sbjct: 2 MENIKLGFMGLGQMGSALAHGI--ANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHC 59
Query: 94 DIVVV 98
DI+V
Sbjct: 60 DIIVC 64
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 26.8 bits (59), Expect = 5.6
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 10/123 (8%)
Query: 39 VGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDI 95
VG G IG+ LQ L+ + + V+ +P F D++ L D+
Sbjct: 12 AAIVGYGNIGRYALQALREAPDFEIAG--IVRRNPAEVPFELQPFRVVSDIE-QLESVDV 68
Query: 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVD-ACSSGHIAGYSGDV 154
+V +P + + + K + I+ + + A A
Sbjct: 69 ALVCSP--SREVERTALEILKKGIC-TADSFDIHDGILALRRSLGDAAGKSGAAAVIASG 125
Query: 155 WNP 157
W+P
Sbjct: 126 WDP 128
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 26.8 bits (60), Expect = 5.6
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 72 PQLEKETGAKFEEDLDTMLPKCDIVVV 98
P + F L K D VV+
Sbjct: 126 PDVTDMDVNHFLRRYKMTLSKVDCVVI 152
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 26.7 bits (60), Expect = 6.1
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 73 QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
+L ++ + + ++ K ++V T + G+ D+D
Sbjct: 167 KLAQKFPLEVVNSPEEVIDKVQVIVNTTSV-----GLKDEDPE 204
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 26.9 bits (60), Expect = 6.3
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 134
+L+ LP + V V R + + +++G I + A
Sbjct: 129 LBHRRZLZKALPGTEFVDV-GZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAA 182
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 26.9 bits (60), Expect = 6.4
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 134
+ + L P ++V V + R + + ++ G I + A+++
Sbjct: 129 LQNRDKLAARYPDAELVDV-AAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVE 182
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2,
protein structure initiative; 2.01A {Desulfitobacterium
hafniense dcb-2} SCOP: c.67.3.1 PDB: 3l5o_A
Length = 270
Score = 26.6 bits (58), Expect = 6.5
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
+++GK VG VG L+ L C+L + E G + +LP
Sbjct: 137 NEVKGKKVGVVGHFP----HLESLLEPICDLSILEW-------SPEEGDYPLPASEFILP 185
Query: 92 KCDIVVV 98
+CD V +
Sbjct: 186 ECDYVYI 192
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics
consortium, TBSGC; 1.50A {Mycobacterium tuberculosis}
PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Length = 334
Score = 26.5 bits (59), Expect = 6.7
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 84 EDLDTMLPKCDIVVVN----TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI 132
E++ ++ + N L KT + + + + +G
Sbjct: 190 EEIRRLVNGAAYLFTNDYEWDLLLSKT--GWSEADVMAQIDLRVTTLGPKGVD 240
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 26.8 bits (60), Expect = 6.8
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 26 GVAY---RAYDLEGKTVGTVGCGRIGKLLLQRLK 56
G A A + GK+V G G +G L + K
Sbjct: 155 GNAVDTVLAGPISGKSVLITGAGPLGLLGIAVAK 188
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 26.8 bits (60), Expect = 6.9
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 5/27 (18%)
Query: 19 SGEWNVAGVAYRAYDLEGKTVGTVGCG 45
+ W + D GK VG +G G
Sbjct: 179 TARWP-----HDGVDFTGKRVGVIGTG 200
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
hyperthermophIle, ribokinase ribokinase fold; 1.70A
{Methanococcus jannaschii} PDB: 2c49_A
Length = 302
Score = 26.4 bits (59), Expect = 7.2
Identities = 6/53 (11%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 84 EDLDTMLPKCDIVVVN----TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI 132
E L ++ + + +N + F+ D + +++ ++G++
Sbjct: 171 EMLLEIIEHTNFLFMNKHEFERASNLL--NFEIDDYLERVDALIVTKGSKGSV 221
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 26.6 bits (59), Expect = 7.8
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 31/136 (22%)
Query: 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG----AKFEEDLDTMLPK 92
+ V +G G IG LL+ L N ++ ++R + + + G A E L +
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE 68
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT----QAVVDACSS---- 144
++V+ P+ + D + D AV DA +
Sbjct: 69 DALIVLAVPM-TAIDSLL--DAVHTHAPNNG--------FTDVVSVKTAVYDAVKARNMQ 117
Query: 145 -----GH-IAG--YSG 152
H +AG SG
Sbjct: 118 HRYVGSHPMAGTANSG 133
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics,
protein structur initiative, midwest center for
structural genomics; 2.40A {Clostridium difficile 630}
Length = 148
Score = 25.8 bits (58), Expect = 8.1
Identities = 1/20 (5%), Positives = 9/20 (45%)
Query: 193 VKDMLDRYFKGEDFPVQNYI 212
++D+ ++ ++ +
Sbjct: 75 IRDLYNQKINENKIELEEIL 94
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB:
1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 26.4 bits (58), Expect = 8.9
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 23/129 (17%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDR-----VKMDPQLEKETGAKFEEDLDTMLPKC 93
V VG G +G+ + + + D L+ +T D+D
Sbjct: 6 VAIVGYGNLGRSVEKLIAKQP------DMDLVGIFSRRATLDTKTPVFDVADVDKHADDV 59
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAK-MKKGVLIVNNA--RGAIMDTQAVVD--ACSSGHIA 148
D++ + D A + V+ I + V++ A ++G++A
Sbjct: 60 DVLFLCMG------SATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVA 113
Query: 149 GYSGDVWNP 157
S W+P
Sbjct: 114 LVSTG-WDP 121
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 26.4 bits (59), Expect = 9.1
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 27/98 (27%)
Query: 23 NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD----------- 71
NV V G +G G +G+ + ++L + H +
Sbjct: 61 NVTRVL-AQVGEPVLASGFIG-GELGQFIAKKLDHADIK---HAFYNIKGETRNCIAILH 115
Query: 72 -----------PQLEKETGAKFEEDLDTMLPKCDIVVV 98
P+++ + A F + + M+ K + V +
Sbjct: 116 EGQQTEILEQGPEIDNQEAAGFIKHFEQMMEKVEAVAI 153
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol,
oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Length = 332
Score = 26.1 bits (58), Expect = 9.5
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 20/76 (26%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEK--ETGAKFE-----EDLD 87
G +G I + + + + M E+ + ++
Sbjct: 3 WGLIGASTIAREWVI-------GAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVE 55
Query: 88 TML--PKCDIVVVNTP 101
++ P D V V+T
Sbjct: 56 ELVGDPDVDAVYVSTT 71
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 26.2 bits (58), Expect = 10.0
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 67 RVKMDPQL------EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK--M 118
+ D Q ++ + E + L D+ V++ E G D +
Sbjct: 147 FLSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRESCRIIR 206
Query: 119 KKGVLIV 125
G I+
Sbjct: 207 SFGAKII 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.427
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,693,707
Number of extensions: 225165
Number of successful extensions: 852
Number of sequences better than 10.0: 1
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 124
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)