BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027409
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 20 SCENIKESGVAELLSAMAAGW-------NAKLIVEAWTH--GGPITTSIGLAIAARHTCA 70
S N K+ L +GW N KL++ TH G PI + G+ I TC
Sbjct: 111 SFNNFKDQFSNVLCGHFGSGWGWLALNKNNKLVILQ-THDAGNPIKENTGIPIL---TCD 166
Query: 71 --RHVCIVPDERSRLAYVKAMYDVVGW 95
H + RL+YVKA +++V W
Sbjct: 167 VWEHAYYIDYRNDRLSYVKAWWNLVNW 193
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 20 SCENIKESGVAELLSAMAAGW-------NAKLIVEAWTH--GGPITTSIGLAIAARHTCA 70
S N KE L +GW N KL++ TH G PI + G+ I TC
Sbjct: 102 SFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQ-THDAGNPIKDNTGIPIL---TCD 157
Query: 71 --RHVCIVPDERSRLAYVKAMYDVVGW 95
H + R +YVKA +++V W
Sbjct: 158 IWEHAYYIDYRNDRASYVKAWWNLVNW 184
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 20 SCENIKESGVAELLSAMAAGW-------NAKLIVEAWTH--GGPITTSIGLAIAARHTCA 70
S N KE L +GW N KL++ TH G PI + G+ I TC
Sbjct: 103 SFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQ-THDAGNPIKDNTGIPIL---TCD 158
Query: 71 --RHVCIVPDERSRLAYVKAMYDVVGW 95
H + R +YVKA +++V W
Sbjct: 159 IWEHAYYIDYRNDRASYVKAWWNLVNW 185
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 13 AYIDTVKSCENIKESGVAELLSAMAAGW-------NAKL-IVEAWTHGGPITTSIGLAIA 64
A I+T S EN KE ++ +GW KL IV G P+T + +
Sbjct: 98 ALIETFGSVENFKEQFSKAAIATFGSGWAWLVKNTEGKLEIVTTSNAGCPLTENKKPLLT 157
Query: 65 ARHTCARHVCIVPDERSRLAYVKAMYDVVGW 95
H + +R YV+A++D+V W
Sbjct: 158 --FDVWEHAYYIDYRNARPKYVEALWDIVNW 186
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 20 SCENIKESGVAELLSAMAAGW-------NAKLIVEAWTH--GGPITTSIGLAIAARHTCA 70
S N K L +GW N KL++ TH G PI + G+ I TC
Sbjct: 103 SFNNFKNEFSNVLCGHFGSGWGWLVLNNNNKLVILQ-THDAGNPIKDNTGIPIL---TCD 158
Query: 71 --RHVCIVPDERSRLAYVKAMYDVVGW 95
H + R +YVKA +++V W
Sbjct: 159 IWEHAYYIDYRNDRPSYVKAWWNLVNW 185
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP 77
+AAG+ + + ++ G IT I LA++A H+ + +P
Sbjct: 259 LAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIP 300
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP 77
+AAG+ + + ++ G IT I LA++A H+ + +P
Sbjct: 259 LAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIP 300
>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1
Length = 197
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 32 LLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD 91
+L+ A N + V+ G T GLA C+R V I PD A + YD
Sbjct: 9 ILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYD 68
Query: 92 VV 93
VV
Sbjct: 69 VV 70
>pdb|1ODS|A Chain A, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|B Chain B, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|C Chain C, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|D Chain D, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|E Chain E, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|F Chain F, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|G Chain G, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|H Chain H, Cephalosporin C Deacetylase From Bacillus Subtilis
Length = 318
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 154 GLRWQGQGVLDRGTRVVRSVFLPVGQGLDIV 184
L W +G+LD+ T R V+L + L+++
Sbjct: 134 ALGWMTKGILDKDTYYYRGVYLDAVRALEVI 164
>pdb|1ODT|C Chain C, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
pdb|1ODT|H Chain H, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
Length = 318
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 154 GLRWQGQGVLDRGTRVVRSVFLPVGQGLDIV 184
L W +G+LD+ T R V+L + L+++
Sbjct: 134 ALGWMTKGILDKDTYYYRGVYLDAVRALEVI 164
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 7 PDAAS---KAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGP---ITTSIG 60
PD +S K + S N+ + ++L +GW IV+ +GG +TT+
Sbjct: 98 PDTSSALGKQIVAQYGSVSNLIDITNSKLAGIQGSGW--AFIVKNKQNGGALDVVTTANQ 155
Query: 61 LAIAARHTCA-------RHVCIVPDERSRLAYVKAMYDVVGW 95
I+A H H + + +L Y KA+++V+ W
Sbjct: 156 DTISAPHLVPIIAIDAWEHAYYLQYQNVKLDYFKAIWNVINW 197
>pdb|1L7A|A Chain A, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
pdb|1L7A|B Chain B, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
Length = 318
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 154 GLRWQGQGVLDRGTRVVRSVFLPVGQGLDIV 184
L W +G+LD+ T R V+L + L+++
Sbjct: 134 ALGWMTKGILDKDTYYYRGVYLDAVRALEVI 164
>pdb|3MQT|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|E Chain E, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|F Chain F, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|G Chain G, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|H Chain H, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|I Chain I, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|J Chain J, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|K Chain K, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|L Chain L, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|M Chain M, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|N Chain N, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|O Chain O, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|P Chain P, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|Q Chain Q, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|R Chain R, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|S Chain S, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|T Chain T, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|U Chain U, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|V Chain V, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|W Chain W, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|X Chain X, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
Length = 394
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 70 ARHVCIVPDERSR----LAYVKAMYDVVGWVSEVIV 101
A VCI+P+++ +AY++ + +V+GW +++V
Sbjct: 170 AVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMV 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,207,368
Number of Sequences: 62578
Number of extensions: 219619
Number of successful extensions: 691
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 14
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)