BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027409
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7IAM2|SYI_METB6 Isoleucine--tRNA ligase OS=Methanoregula boonei (strain 6A8)
GN=ileS PE=3 SV=1
Length = 1076
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 87 KAMYDVVGWVSEVIVRQ----AEEVMGELKGVDFLVVDCTSKDFA---RVLRFARFSNKG 139
+A YD+ G EV V Q A + E G++ + +C ++FA + L A+F N G
Sbjct: 81 RAGYDMHGLPIEVKVEQKLGFASKKDIETFGIEKFINEC--REFAIKNKELMDAQFENLG 138
Query: 140 AVLAFKNAFQR----STSGLRW-----QGQGVLDRGTRVV 170
+ FKNA+Q W Q +G+L+RG RVV
Sbjct: 139 IWMDFKNAYQTIKPWYVEAAWWTLAKAQEKGMLERGYRVV 178
>sp|Q9Y1A9|SODF_PLAVI Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1
Length = 198
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 20 SCENIKESGVAELLSAMAAGW-------NAKLIVEAWTH--GGPITTSIGLAIAARHTCA 70
S N KE L +GW N KL++ TH G PI + G+ I TC
Sbjct: 103 SFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQ-THDAGNPIKDNTGIPIL---TCD 158
Query: 71 --RHVCIVPDERSRLAYVKAMYDVVGW 95
H + R +YVKA +++V W
Sbjct: 159 IWEHAYYIDYRNDRASYVKAWWNLVNW 185
>sp|Q9TW89|SODF_PLAFA Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3
SV=1
Length = 198
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 20 SCENIKESGVAELLSAMAAGW-------NAKLIVEAWTH--GGPITTSIGLAIAARHTCA 70
S N KE L +GW N KL++ TH G PI + G+ I TC
Sbjct: 103 SFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQ-THDAGNPIKDNTGIPIL---TCD 158
Query: 71 --RHVCIVPDERSRLAYVKAMYDVVGW 95
H + R +YVKA +++V W
Sbjct: 159 IWEHAYYIDYRNDRASYVKAWWNLVNW 185
>sp|Q8IAY6|SODF_PLAF7 Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7)
GN=SODB PE=1 SV=1
Length = 198
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 20 SCENIKESGVAELLSAMAAGW-------NAKLIVEAWTH--GGPITTSIGLAIAARHTCA 70
S N KE L +GW N KL++ TH G PI + G+ I TC
Sbjct: 103 SFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQ-THDAGNPIKDNTGIPIL---TCD 158
Query: 71 --RHVCIVPDERSRLAYVKAMYDVVGW 95
H + R +YVKA +++V W
Sbjct: 159 IWEHAYYIDYRNDRASYVKAWWNLVNW 185
>sp|Q27740|SODF_PLAFX Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3)
GN=SODB PE=1 SV=1
Length = 198
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 20 SCENIKESGVAELLSAMAAGW-------NAKLIVEAWTH--GGPITTSIGLAIAARHTCA 70
S N KE L +GW N KL++ TH G PI + G+ I TC
Sbjct: 103 SFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQ-THDAGNPIKDNTGIPIL---TCD 158
Query: 71 --RHVCIVPDERSRLAYVKAMYDVVGW 95
H + R +YVKA +++V W
Sbjct: 159 IWEHAYYIDYRNDRASYVKAWWNLVNW 185
>sp|Q9Y1B0|SODF_PLAMA Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1
Length = 198
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 20 SCENIKESGVAELLSAMAAGW-------NAKLIVEAWTH--GGPITTSIGLAIAARHTCA 70
S N KE L +GW N KL++ TH G PI + G+ I
Sbjct: 103 SFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQ-THDAGNPIKDNTGIPILTCDIWE 161
Query: 71 RHVCIVPDERS-RLAYVKAMYDVVGW 95
CI D R+ R +YVKA +++V W
Sbjct: 162 HAYCI--DYRNDRASYVKAWWNLVNW 185
>sp|Q66EY9|LSRA_YERPS Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=lsrA
PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 LWTQPAQEAAVLERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + +++ + ++ + + +VV V+V E+ G L G
Sbjct: 435 RGVDVSARSDIYQLIRSIAEQQVAIIFISSDLEEVVQMADRVLVMHQGEINGALSG 490
>sp|B2K3G1|LSRA_YERPB Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=lsrA
PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 LWTQPAQEAAVLERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + +++ + ++ + + +VV V+V E+ G L G
Sbjct: 435 RGVDVSARSDIYQLIRSIAEQQVAIIFISSDLEEVVQMADRVLVMHQGEINGALSG 490
>sp|B1JLQ0|LSRA_YERPY Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=lsrA
PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 LWTQPAQEAAVLERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + +++ + ++ + + +VV V+V E+ G L G
Sbjct: 435 RGVDVSARSDIYQLIRSIAEQQVAIIFISSDLEEVVQMADRVLVMHQGEINGALSG 490
>sp|A7FMJ7|LSRA_YERP3 Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=lsrA PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 LWTQPAQEAAVLERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + +++ + ++ + + +VV V+V E+ G L G
Sbjct: 435 RGVDVSARSDIYQLIRSIAEQQVAIIFISSDLEEVVQMADRVLVMHQGEINGALSG 490
>sp|A4TQL5|LSRA_YERPP Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia pestis
(strain Pestoides F) GN=lsrA PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 LWTQPAQEAAVLERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + +++ + ++ + + +VV V+V E+ G L G
Sbjct: 435 RGVDVSARSDIYQLIRSIAEQQVAIIFISSDLEEVVQMADRVLVMHQGEINGALSG 490
>sp|Q1CN15|LSRA_YERPN Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=lsrA PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 LWTQPAQEAAVLERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + +++ + ++ + + +VV V+V E+ G L G
Sbjct: 435 RGVDVSARSDIYQLIRSIAEQQVAIIFISSDLEEVVQMADRVLVMHQGEINGALSG 490
>sp|A9R074|LSRA_YERPG Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=lsrA PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 LWTQPAQEAAVLERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + +++ + ++ + + +VV V+V E+ G L G
Sbjct: 435 RGVDVSARSDIYQLIRSIAEQQVAIIFISSDLEEVVQMADRVLVMHQGEINGALSG 490
>sp|Q0WJP9|LSRA_YERPE Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia pestis
GN=lsrA PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 LWTQPAQEAAVLERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + +++ + ++ + + +VV V+V E+ G L G
Sbjct: 435 RGVDVSARSDIYQLIRSIAEQQVAIIFISSDLEEVVQMADRVLVMHQGEINGALSG 490
>sp|Q1C138|LSRA_YERPA Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=lsrA PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 LWTQPAQEAAVLERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + +++ + ++ + + +VV V+V E+ G L G
Sbjct: 435 RGVDVSARSDIYQLIRSIAEQQVAIIFISSDLEEVVQMADRVLVMHQGEINGALSG 490
>sp|Q6XQI9|L_ALLVP RNA-directed RNA polymerase L OS=Allpahuayo virus (isolate
Rat/Peru/CLHP-2472/1997) GN=L PE=3 SV=2
Length = 2201
Score = 31.6 bits (70), Expect = 4.8, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 111 LKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRG--TR 168
L+G+DF + D T D V+ + V N + G +G G++DRG TR
Sbjct: 1189 LRGLDFRLKDGTLIDKEAVVNILSWHIHKMVEVPFNVVEAYLKGFIKRGLGLMDRGGATR 1248
Query: 169 VVRSVFLPVGQGLDIVHVGSTSGSGSG 195
V +F QG+ H+ S G G
Sbjct: 1249 VEEFMFGYFDQGIVPSHISSVIDMGQG 1275
>sp|A1JJ55|LSRA_YERE8 Autoinducer 2 import ATP-binding protein LsrA OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=lsrA PE=3 SV=1
Length = 527
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSI---- 59
+W+ A A ++ + NIK S + + + ++ G KL++ P+ I
Sbjct: 375 IWTHPAQEAAILERYRRALNIKFSHLEQPVRTLSGGNQQKLLIAKCLEANPLLLIIDEPT 434
Query: 60 -GLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGELKG 113
G+ ++AR + + + + + ++ + + +VV V+V E+ G L+G
Sbjct: 435 RGVDVSARSDIYQLIRSIAAQHVAIIFISSDLEEVVQMADRVLVMHQGEISGALEG 490
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,902,081
Number of Sequences: 539616
Number of extensions: 3283222
Number of successful extensions: 8721
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 8715
Number of HSP's gapped (non-prelim): 26
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)