Query 027409
Match_columns 223
No_of_seqs 122 out of 873
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07279 DUF1442: Protein of u 100.0 2E-57 4.4E-62 391.2 20.6 213 1-220 1-217 (218)
2 COG4122 Predicted O-methyltran 100.0 1.3E-44 2.8E-49 314.0 18.5 173 10-187 11-218 (219)
3 PF01596 Methyltransf_3: O-met 100.0 1.2E-44 2.6E-49 311.2 14.6 159 22-187 26-205 (205)
4 PLN02589 caffeoyl-CoA O-methyl 100.0 1.7E-42 3.6E-47 305.5 18.3 159 24-187 62-246 (247)
5 PLN02476 O-methyltransferase 100.0 1.7E-41 3.7E-46 303.6 18.1 157 24-187 101-278 (278)
6 PLN02781 Probable caffeoyl-CoA 100.0 1.3E-37 2.8E-42 271.3 18.3 159 24-187 51-233 (234)
7 KOG1663 O-methyltransferase [S 100.0 2.6E-36 5.7E-41 262.4 16.5 160 23-187 55-237 (237)
8 PLN03075 nicotianamine synthas 99.7 3E-17 6.6E-22 148.5 12.8 119 24-147 107-234 (296)
9 PRK13942 protein-L-isoaspartat 99.6 3.2E-15 7E-20 128.2 12.9 129 11-145 43-175 (212)
10 PF13578 Methyltransf_24: Meth 99.6 2.1E-16 4.6E-21 120.3 3.7 98 46-147 1-106 (106)
11 PRK00312 pcm protein-L-isoaspa 99.6 1.1E-14 2.3E-19 123.9 13.6 148 24-182 61-211 (212)
12 TIGR00080 pimt protein-L-isoas 99.6 1.8E-14 4E-19 123.1 12.8 116 24-145 60-176 (215)
13 PRK04457 spermidine synthase; 99.6 2.9E-14 6.3E-19 126.5 13.3 114 30-149 55-179 (262)
14 PRK13944 protein-L-isoaspartat 99.6 4.3E-14 9.3E-19 120.5 12.9 117 24-146 55-173 (205)
15 TIGR00138 gidB 16S rRNA methyl 99.5 1.3E-13 2.8E-18 116.1 13.3 102 37-145 38-141 (181)
16 COG2518 Pcm Protein-L-isoaspar 99.5 5.7E-14 1.2E-18 121.6 10.8 128 11-147 39-170 (209)
17 PRK00107 gidB 16S rRNA methylt 99.5 2E-13 4.3E-18 116.0 13.9 127 12-145 4-144 (187)
18 PF12847 Methyltransf_18: Meth 99.5 7E-14 1.5E-18 105.9 9.7 98 42-145 2-110 (112)
19 PRK07402 precorrin-6B methylas 99.5 2.9E-13 6.3E-18 113.9 14.3 119 23-147 22-143 (196)
20 PRK08287 cobalt-precorrin-6Y C 99.5 2.7E-13 5.9E-18 113.1 13.7 120 24-150 14-135 (187)
21 TIGR02469 CbiT precorrin-6Y C5 99.5 5.9E-13 1.3E-17 101.7 12.5 105 36-145 14-121 (124)
22 PRK00377 cbiT cobalt-precorrin 99.5 9E-13 1.9E-17 111.4 13.8 122 24-149 22-148 (198)
23 PF01135 PCMT: Protein-L-isoas 99.5 2.8E-13 6E-18 117.1 10.2 131 12-148 40-174 (209)
24 COG2242 CobL Precorrin-6B meth 99.5 1.6E-12 3.6E-17 110.7 13.7 119 27-151 20-140 (187)
25 PRK00121 trmB tRNA (guanine-N( 99.4 5.9E-13 1.3E-17 113.3 9.0 126 12-144 8-154 (202)
26 COG2519 GCD14 tRNA(1-methylade 99.4 3.1E-12 6.7E-17 113.5 12.0 132 13-151 66-200 (256)
27 PRK13943 protein-L-isoaspartat 99.4 9E-12 2E-16 114.1 13.3 116 24-145 63-179 (322)
28 PRK01581 speE spermidine synth 99.4 6.8E-12 1.5E-16 116.8 11.8 107 36-146 145-268 (374)
29 PLN02366 spermidine synthase 99.3 1.5E-11 3.3E-16 111.9 13.8 114 28-145 73-205 (308)
30 PRK00811 spermidine synthase; 99.3 9E-12 1.9E-16 111.6 12.0 102 40-145 75-190 (283)
31 PF08704 GCD14: tRNA methyltra 99.3 5E-11 1.1E-15 105.7 13.5 127 14-146 13-146 (247)
32 PF13847 Methyltransf_31: Meth 99.3 2.3E-11 5E-16 98.1 10.1 104 40-148 2-112 (152)
33 PRK15128 23S rRNA m(5)C1962 me 99.3 2.1E-11 4.6E-16 114.4 10.9 111 28-144 201-337 (396)
34 PRK11036 putative S-adenosyl-L 99.3 6.8E-11 1.5E-15 103.4 13.4 127 9-144 8-147 (255)
35 PRK14902 16S rRNA methyltransf 99.3 3.5E-11 7.6E-16 113.7 11.9 119 24-146 233-379 (444)
36 TIGR00537 hemK_rel_arch HemK-r 99.3 5E-11 1.1E-15 98.8 10.9 110 30-148 8-143 (179)
37 TIGR02752 MenG_heptapren 2-hep 99.3 8.6E-11 1.9E-15 100.4 12.6 104 37-144 41-149 (231)
38 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.5E-10 3.2E-15 99.4 13.2 111 30-146 42-159 (199)
39 PRK11783 rlmL 23S rRNA m(2)G24 99.2 3.5E-11 7.6E-16 119.9 10.4 109 34-148 531-658 (702)
40 PLN02823 spermine synthase 99.2 1.1E-10 2.3E-15 107.6 11.8 102 40-145 102-219 (336)
41 TIGR03533 L3_gln_methyl protei 99.2 1.7E-10 3.6E-15 103.5 12.2 118 24-147 100-252 (284)
42 PRK14903 16S rRNA methyltransf 99.2 1.9E-10 4.1E-15 108.8 13.1 119 24-146 220-366 (431)
43 PRK15451 tRNA cmo(5)U34 methyl 99.2 2.7E-10 5.9E-15 99.5 12.6 105 40-149 55-168 (247)
44 TIGR00091 tRNA (guanine-N(7)-) 99.2 2.2E-10 4.8E-15 96.7 11.4 100 40-144 15-130 (194)
45 TIGR00446 nop2p NOL1/NOP2/sun 99.2 3.3E-10 7.1E-15 100.4 12.8 117 26-146 56-199 (264)
46 TIGR00417 speE spermidine synt 99.2 3E-10 6.5E-15 100.8 12.3 101 40-145 71-185 (270)
47 PRK14904 16S rRNA methyltransf 99.2 2.4E-10 5.2E-15 108.2 11.7 118 24-146 233-377 (445)
48 PF05175 MTS: Methyltransferas 99.1 4.5E-10 9.8E-15 93.0 11.3 106 32-143 22-137 (170)
49 PRK11873 arsM arsenite S-adeno 99.1 4.9E-10 1.1E-14 98.5 12.1 108 37-149 73-186 (272)
50 PRK14901 16S rRNA methyltransf 99.1 4.7E-10 1E-14 105.9 12.2 118 25-146 236-384 (434)
51 PF13659 Methyltransf_26: Meth 99.1 5E-10 1.1E-14 85.4 9.7 96 43-144 2-113 (117)
52 TIGR00740 methyltransferase, p 99.1 1.7E-09 3.7E-14 93.5 13.9 115 29-148 39-163 (239)
53 PRK10901 16S rRNA methyltransf 99.1 7.3E-10 1.6E-14 104.4 12.4 122 25-151 228-378 (427)
54 PRK00517 prmA ribosomal protei 99.1 8.4E-10 1.8E-14 96.8 11.9 110 26-149 103-216 (250)
55 PRK11805 N5-glutamine S-adenos 99.1 1.1E-09 2.4E-14 99.4 12.5 116 24-145 112-262 (307)
56 TIGR00563 rsmB ribosomal RNA s 99.1 1.2E-09 2.5E-14 102.9 12.3 117 25-146 222-368 (426)
57 TIGR03534 RF_mod_PrmC protein- 99.1 2.5E-09 5.4E-14 91.8 13.0 117 24-146 68-217 (251)
58 TIGR00477 tehB tellurite resis 99.1 1.3E-09 2.9E-14 92.1 10.6 99 36-143 25-130 (195)
59 COG2226 UbiE Methylase involve 99.1 3.1E-09 6.7E-14 93.9 13.0 118 27-151 37-161 (238)
60 TIGR00479 rumA 23S rRNA (uraci 99.0 2.6E-09 5.6E-14 100.3 13.2 113 25-144 272-394 (431)
61 TIGR00406 prmA ribosomal prote 99.0 2.8E-09 6.1E-14 95.5 12.6 116 26-149 143-262 (288)
62 PLN02244 tocopherol O-methyltr 99.0 2.7E-09 5.9E-14 97.8 12.5 100 40-146 117-223 (340)
63 PRK03612 spermidine synthase; 99.0 2.3E-09 5.1E-14 103.6 11.8 104 39-146 295-415 (521)
64 PRK11207 tellurite resistance 99.0 2.5E-09 5.5E-14 90.6 10.4 108 24-143 17-131 (197)
65 PRK14967 putative methyltransf 99.0 7.2E-09 1.6E-13 89.1 13.1 96 42-144 37-157 (223)
66 PRK14968 putative methyltransf 99.0 5.4E-09 1.2E-13 85.7 11.8 83 31-121 13-98 (188)
67 TIGR03587 Pse_Me-ase pseudamin 99.0 2.5E-09 5.3E-14 91.7 9.9 106 4-122 8-114 (204)
68 TIGR00536 hemK_fam HemK family 99.0 4.6E-09 9.9E-14 93.8 11.9 118 24-147 93-245 (284)
69 PRK03522 rumB 23S rRNA methylu 99.0 1.1E-08 2.4E-13 92.7 14.3 113 24-143 152-271 (315)
70 PRK01683 trans-aconitate 2-met 99.0 5E-09 1.1E-13 91.2 10.9 98 38-145 28-129 (258)
71 PRK01544 bifunctional N5-gluta 99.0 6.9E-09 1.5E-13 100.2 12.8 117 24-146 94-269 (506)
72 PRK00216 ubiE ubiquinone/menaq 99.0 1.8E-08 4E-13 85.2 13.8 100 41-144 51-156 (239)
73 TIGR00095 RNA methyltransferas 99.0 1.8E-08 3.9E-13 85.5 13.6 110 31-146 39-159 (189)
74 cd02440 AdoMet_MTases S-adenos 98.9 9.9E-09 2.2E-13 73.0 9.9 96 44-145 1-103 (107)
75 PF13649 Methyltransf_25: Meth 98.9 1.5E-09 3.3E-14 81.8 5.6 93 45-140 1-101 (101)
76 smart00828 PKS_MT Methyltransf 98.9 7.2E-09 1.6E-13 88.1 10.4 100 43-148 1-106 (224)
77 PF01209 Ubie_methyltran: ubiE 98.9 3.7E-09 8E-14 92.6 8.8 109 32-145 38-152 (233)
78 PRK04266 fibrillarin; Provisio 98.9 9.2E-09 2E-13 89.8 11.1 110 30-145 59-175 (226)
79 PLN02233 ubiquinone biosynthes 98.9 1.9E-08 4.2E-13 89.0 13.2 107 37-147 69-183 (261)
80 PRK05134 bifunctional 3-demeth 98.9 1.3E-08 2.9E-13 87.1 11.8 116 24-146 31-151 (233)
81 TIGR01177 conserved hypothetic 98.9 1.3E-08 2.8E-13 92.7 12.3 113 24-144 165-292 (329)
82 PRK12335 tellurite resistance 98.9 1.2E-08 2.7E-13 91.0 11.8 97 38-143 117-220 (287)
83 TIGR01983 UbiG ubiquinone bios 98.9 4.3E-08 9.2E-13 83.1 13.7 113 26-145 26-148 (224)
84 COG0421 SpeE Spermidine syntha 98.9 1.8E-08 3.9E-13 91.0 11.9 111 30-146 66-190 (282)
85 PRK08317 hypothetical protein; 98.9 2.8E-08 6.2E-13 83.4 12.4 112 31-146 9-124 (241)
86 PF08241 Methyltransf_11: Meth 98.9 4.4E-09 9.5E-14 76.1 6.5 90 46-144 1-95 (95)
87 PRK09328 N5-glutamine S-adenos 98.9 1.3E-08 2.7E-13 89.0 10.5 116 24-145 88-237 (275)
88 PLN02396 hexaprenyldihydroxybe 98.9 1.3E-08 2.8E-13 93.3 11.0 100 41-147 131-236 (322)
89 PRK13168 rumA 23S rRNA m(5)U19 98.9 3.2E-08 7E-13 93.6 13.8 115 24-145 276-399 (443)
90 PRK14121 tRNA (guanine-N(7)-)- 98.9 2.7E-08 5.9E-13 93.4 12.8 110 31-146 113-237 (390)
91 PRK10258 biotin biosynthesis p 98.9 1.7E-08 3.6E-13 87.7 10.3 112 24-147 25-141 (251)
92 PTZ00098 phosphoethanolamine N 98.9 1.6E-08 3.4E-13 89.6 9.9 103 38-148 49-158 (263)
93 TIGR02072 BioC biotin biosynth 98.8 2.9E-08 6.2E-13 83.7 10.9 99 40-146 33-135 (240)
94 TIGR02716 C20_methyl_CrtF C-20 98.8 4.2E-08 9.2E-13 88.0 12.4 105 35-147 143-255 (306)
95 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 4.9E-08 1.1E-12 81.8 11.9 103 39-146 37-143 (223)
96 PRK07580 Mg-protoporphyrin IX 98.8 5.9E-08 1.3E-12 82.4 12.4 103 31-143 51-163 (230)
97 TIGR02085 meth_trns_rumB 23S r 98.8 8.5E-08 1.8E-12 89.2 14.4 114 24-144 212-332 (374)
98 PF01564 Spermine_synth: Sperm 98.8 3.9E-08 8.4E-13 86.8 11.3 102 41-146 76-191 (246)
99 PRK14103 trans-aconitate 2-met 98.8 3.7E-08 8E-13 86.1 10.6 96 38-145 26-125 (255)
100 TIGR03704 PrmC_rel_meth putati 98.8 5E-08 1.1E-12 86.1 11.4 114 26-146 67-216 (251)
101 COG4123 Predicted O-methyltran 98.8 2.5E-08 5.3E-13 88.7 9.1 86 30-120 33-122 (248)
102 PRK09489 rsmC 16S ribosomal RN 98.8 5.5E-08 1.2E-12 89.7 11.0 115 25-147 181-305 (342)
103 PRK14966 unknown domain/N5-glu 98.8 1.2E-07 2.6E-12 89.9 13.4 93 24-121 233-327 (423)
104 PRK15001 SAM-dependent 23S rib 98.7 8.6E-08 1.9E-12 89.8 11.5 114 25-145 213-339 (378)
105 PLN02336 phosphoethanolamine N 98.7 6.5E-08 1.4E-12 91.6 10.7 112 30-148 256-371 (475)
106 smart00650 rADc Ribosomal RNA 98.7 1.7E-07 3.6E-12 77.2 11.2 101 40-148 12-115 (169)
107 PF04989 CmcI: Cephalosporin h 98.7 8.7E-08 1.9E-12 83.1 9.8 120 24-148 15-149 (206)
108 PRK06922 hypothetical protein; 98.7 1.3E-07 2.9E-12 93.7 12.2 114 30-149 407-541 (677)
109 TIGR02143 trmA_only tRNA (urac 98.7 3.2E-07 6.9E-12 84.9 13.9 112 24-144 177-309 (353)
110 PRK05031 tRNA (uracil-5-)-meth 98.7 2.3E-07 5E-12 86.0 12.9 104 24-134 186-310 (362)
111 PRK11705 cyclopropane fatty ac 98.7 1.8E-07 3.9E-12 87.5 12.2 110 27-147 150-268 (383)
112 PF02353 CMAS: Mycolic acid cy 98.7 1.2E-07 2.6E-12 85.0 9.9 115 26-149 44-169 (273)
113 COG2227 UbiG 2-polyprenyl-3-me 98.7 1.3E-07 2.8E-12 83.7 9.6 117 24-147 39-162 (243)
114 PRK11088 rrmA 23S rRNA methylt 98.7 1.9E-07 4.1E-12 82.6 10.5 94 41-145 85-180 (272)
115 TIGR02021 BchM-ChlM magnesium 98.7 3.7E-07 8.1E-12 77.8 11.8 98 39-146 53-158 (219)
116 TIGR03438 probable methyltrans 98.6 4.3E-07 9.2E-12 82.0 12.2 103 41-146 63-177 (301)
117 PRK11933 yebU rRNA (cytosine-C 98.6 4.1E-07 8.9E-12 87.4 12.7 118 25-146 95-242 (470)
118 COG1092 Predicted SAM-dependen 98.6 1.6E-07 3.5E-12 88.3 9.3 108 34-148 210-338 (393)
119 PRK15068 tRNA mo(5)U34 methylt 98.6 5.6E-07 1.2E-11 82.3 12.3 105 40-151 121-231 (322)
120 PTZ00338 dimethyladenosine tra 98.6 3.5E-07 7.6E-12 82.9 10.5 88 24-120 19-108 (294)
121 PRK04338 N(2),N(2)-dimethylgua 98.6 7.2E-07 1.6E-11 83.6 12.1 97 43-145 59-157 (382)
122 PF03602 Cons_hypoth95: Conser 98.6 4E-07 8.6E-12 77.2 9.2 110 30-147 30-154 (183)
123 PF08242 Methyltransf_12: Meth 98.6 2.8E-08 6.1E-13 74.1 2.0 92 46-142 1-99 (99)
124 PF09445 Methyltransf_15: RNA 98.6 3.2E-07 6.8E-12 76.9 8.4 72 43-121 1-77 (163)
125 COG2890 HemK Methylase of poly 98.5 3.5E-07 7.7E-12 82.2 9.1 89 24-119 91-182 (280)
126 PRK06202 hypothetical protein; 98.5 1.1E-06 2.4E-11 75.6 11.6 110 31-148 50-168 (232)
127 PRK14896 ksgA 16S ribosomal RN 98.5 4.8E-07 1.1E-11 79.8 9.1 86 24-119 12-97 (258)
128 PLN02336 phosphoethanolamine N 98.5 7.2E-07 1.6E-11 84.5 10.7 110 30-149 27-146 (475)
129 smart00138 MeTrc Methyltransfe 98.5 5E-07 1.1E-11 80.3 8.8 105 41-146 99-242 (264)
130 PF06325 PrmA: Ribosomal prote 98.5 6E-07 1.3E-11 81.6 8.9 116 26-151 145-264 (295)
131 PTZ00146 fibrillarin; Provisio 98.5 1.3E-06 2.9E-11 79.4 10.8 99 42-145 133-236 (293)
132 TIGR03840 TMPT_Se_Te thiopurin 98.5 1.4E-06 3.1E-11 75.3 10.4 96 41-146 34-152 (213)
133 TIGR00308 TRM1 tRNA(guanine-26 98.5 2.5E-06 5.4E-11 79.8 12.6 108 33-145 33-146 (374)
134 KOG2904 Predicted methyltransf 98.4 2.1E-06 4.6E-11 77.7 11.3 120 24-148 125-287 (328)
135 PLN02490 MPBQ/MSBQ methyltrans 98.4 2E-06 4.3E-11 79.7 11.1 96 41-144 113-213 (340)
136 COG2521 Predicted archaeal met 98.4 2.3E-07 5E-12 82.3 4.5 97 41-143 134-242 (287)
137 TIGR00452 methyltransferase, p 98.4 3.9E-06 8.4E-11 76.9 12.6 119 24-149 99-228 (314)
138 PF03059 NAS: Nicotianamine sy 98.4 1.5E-06 3.3E-11 78.4 9.4 104 41-147 120-231 (276)
139 PF10672 Methyltrans_SAM: S-ad 98.4 1.4E-06 2.9E-11 79.0 8.6 110 27-146 112-239 (286)
140 KOG1661 Protein-L-isoaspartate 98.4 3.4E-06 7.4E-11 73.7 10.5 102 39-144 80-191 (237)
141 KOG4300 Predicted methyltransf 98.4 2.3E-06 5.1E-11 74.8 9.4 98 40-144 75-180 (252)
142 PRK11188 rrmJ 23S rRNA methylt 98.4 5E-06 1.1E-10 71.5 11.3 91 40-145 50-164 (209)
143 PLN02585 magnesium protoporphy 98.4 6.5E-06 1.4E-10 75.4 12.8 95 41-145 144-249 (315)
144 COG0220 Predicted S-adenosylme 98.4 4.3E-06 9.3E-11 73.4 11.0 108 34-146 41-166 (227)
145 PRK13255 thiopurine S-methyltr 98.3 3.6E-06 7.8E-11 73.0 10.1 96 41-142 37-151 (218)
146 TIGR00438 rrmJ cell division p 98.3 3.2E-06 7E-11 70.6 9.4 96 36-145 27-145 (188)
147 PF02390 Methyltransf_4: Putat 98.3 2.6E-06 5.7E-11 72.7 8.3 94 44-142 20-129 (195)
148 COG2264 PrmA Ribosomal protein 98.3 3.6E-06 7.7E-11 76.8 9.5 113 30-151 153-268 (300)
149 COG4106 Tam Trans-aconitate me 98.3 1.6E-06 3.4E-11 76.3 6.7 127 3-148 1-134 (257)
150 COG2230 Cfa Cyclopropane fatty 98.3 7.5E-06 1.6E-10 74.2 10.6 116 25-149 53-179 (283)
151 PF05401 NodS: Nodulation prot 98.3 2.6E-06 5.5E-11 73.6 6.9 96 41-146 43-146 (201)
152 PRK00274 ksgA 16S ribosomal RN 98.2 7.4E-06 1.6E-10 72.9 9.9 75 24-107 25-99 (272)
153 PF02527 GidB: rRNA small subu 98.2 1.1E-05 2.3E-10 68.8 10.3 93 44-144 51-146 (184)
154 KOG2915 tRNA(1-methyladenosine 98.2 6.4E-06 1.4E-10 74.5 8.9 91 26-121 91-185 (314)
155 PHA03412 putative methyltransf 98.2 2E-05 4.4E-10 69.9 11.3 113 26-148 36-165 (241)
156 COG2813 RsmC 16S RNA G1207 met 98.2 1.3E-05 2.8E-10 73.1 10.2 115 24-146 142-267 (300)
157 PF13489 Methyltransf_23: Meth 98.2 1.5E-05 3.3E-10 63.0 9.4 105 29-149 9-118 (161)
158 COG0742 N6-adenine-specific me 98.2 3.8E-05 8.3E-10 65.8 12.3 111 30-147 31-155 (187)
159 PRK05785 hypothetical protein; 98.2 1.7E-05 3.7E-10 68.9 10.2 96 31-140 40-141 (226)
160 PRK00536 speE spermidine synth 98.2 1.9E-05 4.2E-10 70.7 10.8 98 37-146 68-171 (262)
161 PRK11727 23S rRNA mA1618 methy 98.1 4.7E-05 1E-09 70.1 11.9 114 3-120 52-196 (321)
162 PLN02672 methionine S-methyltr 98.1 2.5E-05 5.3E-10 81.7 11.0 91 24-119 97-209 (1082)
163 PF08003 Methyltransf_9: Prote 98.1 2.9E-05 6.3E-10 71.1 9.9 108 39-152 113-225 (315)
164 PF03848 TehB: Tellurite resis 98.0 3.5E-05 7.6E-10 66.2 9.8 106 30-145 20-132 (192)
165 PHA03411 putative methyltransf 98.0 2.7E-05 5.8E-10 70.5 9.1 74 38-121 61-134 (279)
166 TIGR02081 metW methionine bios 98.0 2.3E-05 4.9E-10 65.8 8.1 70 41-122 13-84 (194)
167 PF05711 TylF: Macrocin-O-meth 98.0 4.7E-05 1E-09 67.8 10.4 124 24-152 53-218 (248)
168 TIGR00755 ksgA dimethyladenosi 98.0 2.5E-05 5.3E-10 68.6 8.4 76 24-107 12-87 (253)
169 PF02475 Met_10: Met-10+ like- 98.0 3E-05 6.5E-10 66.9 8.4 97 39-142 99-198 (200)
170 COG2263 Predicted RNA methylas 98.0 9.1E-05 2E-09 63.8 10.8 88 24-120 25-115 (198)
171 COG0357 GidB Predicted S-adeno 97.9 0.00013 2.9E-09 63.7 10.8 128 11-144 24-166 (215)
172 COG2520 Predicted methyltransf 97.9 0.00016 3.4E-09 67.3 11.8 114 31-151 178-294 (341)
173 PF10294 Methyltransf_16: Puta 97.9 0.00021 4.6E-09 59.6 11.4 103 37-146 41-157 (173)
174 KOG2730 Methylase [General fun 97.8 3.1E-05 6.7E-10 68.3 5.3 99 25-131 76-182 (263)
175 COG0030 KsgA Dimethyladenosine 97.8 0.00013 2.8E-09 65.4 8.7 89 24-120 13-102 (259)
176 PRK04148 hypothetical protein; 97.7 7E-05 1.5E-09 61.0 6.1 95 28-134 3-99 (134)
177 KOG1270 Methyltransferases [Co 97.7 5.2E-05 1.1E-09 68.2 5.7 132 3-147 47-196 (282)
178 TIGR01444 fkbM_fam methyltrans 97.7 0.00012 2.7E-09 57.6 7.2 56 44-104 1-57 (143)
179 PF01170 UPF0020: Putative RNA 97.7 0.0002 4.2E-09 60.3 8.6 119 24-145 11-150 (179)
180 COG0144 Sun tRNA and rRNA cyto 97.7 0.00055 1.2E-08 63.6 11.9 121 24-147 139-289 (355)
181 PF05185 PRMT5: PRMT5 arginine 97.7 0.00029 6.3E-09 67.5 10.0 112 30-146 171-297 (448)
182 PRK00050 16S rRNA m(4)C1402 me 97.7 0.00026 5.7E-09 64.5 9.2 81 41-126 19-103 (296)
183 COG2265 TrmA SAM-dependent met 97.6 0.00076 1.6E-08 64.5 11.7 116 24-146 272-397 (432)
184 PF05958 tRNA_U5-meth_tr: tRNA 97.6 0.00031 6.8E-09 65.0 8.8 104 24-134 176-300 (352)
185 PRK01544 bifunctional N5-gluta 97.5 0.00085 1.8E-08 65.1 11.1 98 40-142 346-458 (506)
186 KOG1540 Ubiquinone biosynthesi 97.4 0.0011 2.3E-08 59.9 9.8 98 43-144 102-212 (296)
187 KOG1709 Guanidinoacetate methy 97.4 0.0024 5.2E-08 56.6 11.5 140 4-151 56-211 (271)
188 PRK10742 putative methyltransf 97.4 0.0013 2.8E-08 58.8 9.6 73 44-122 91-173 (250)
189 COG1041 Predicted DNA modifica 97.4 0.002 4.3E-08 60.1 11.1 122 14-144 164-308 (347)
190 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.0012 2.5E-08 59.5 9.4 95 24-122 68-165 (283)
191 PF00398 RrnaAD: Ribosomal RNA 97.3 0.00053 1.1E-08 60.7 6.5 76 24-107 13-88 (262)
192 KOG3191 Predicted N6-DNA-methy 97.3 0.0019 4.1E-08 55.7 9.0 78 38-120 40-117 (209)
193 PRK13256 thiopurine S-methyltr 97.3 0.0015 3.2E-08 57.5 8.5 102 41-148 43-165 (226)
194 KOG1499 Protein arginine N-met 97.3 0.0013 2.8E-08 61.1 8.6 99 39-147 58-168 (346)
195 COG4262 Predicted spermidine s 97.3 0.0032 7E-08 59.5 11.1 102 39-145 287-406 (508)
196 PF04816 DUF633: Family of unk 97.2 0.0014 3E-08 56.8 7.3 98 45-147 1-103 (205)
197 KOG0820 Ribosomal RNA adenine 97.1 0.0022 4.7E-08 58.4 8.5 87 25-120 42-130 (315)
198 PF05724 TPMT: Thiopurine S-me 97.1 0.0014 3E-08 57.1 7.1 114 24-144 21-153 (218)
199 PF00891 Methyltransf_2: O-met 97.1 0.0012 2.5E-08 57.1 6.6 101 37-151 96-205 (241)
200 PRK01747 mnmC bifunctional tRN 97.1 0.0041 8.9E-08 61.7 11.3 107 40-146 56-206 (662)
201 COG4076 Predicted RNA methylas 97.1 0.00097 2.1E-08 58.0 5.9 70 30-107 22-92 (252)
202 COG3963 Phospholipid N-methylt 97.1 0.0033 7.2E-08 53.6 9.0 112 25-144 29-154 (194)
203 KOG1271 Methyltransferases [Ge 97.1 0.0031 6.8E-08 54.6 8.3 102 39-146 65-181 (227)
204 PF13679 Methyltransf_32: Meth 97.0 0.0063 1.4E-07 48.9 9.3 74 30-106 10-93 (141)
205 PF07021 MetW: Methionine bios 97.0 0.0037 8.1E-08 53.9 7.9 101 35-147 6-112 (193)
206 PLN02232 ubiquinone biosynthes 96.9 0.0033 7.1E-08 51.6 7.0 74 73-147 1-82 (160)
207 PRK11783 rlmL 23S rRNA m(2)G24 96.9 0.014 3E-07 58.9 12.3 94 24-120 172-310 (702)
208 KOG2361 Predicted methyltransf 96.8 0.0019 4.1E-08 57.7 5.3 103 41-146 71-183 (264)
209 PF09243 Rsm22: Mitochondrial 96.8 0.0073 1.6E-07 54.1 9.1 50 40-92 32-81 (274)
210 PHA01634 hypothetical protein 96.8 0.0056 1.2E-07 50.2 7.2 78 41-130 28-107 (156)
211 PRK10611 chemotaxis methyltran 96.8 0.012 2.5E-07 53.5 9.9 121 26-146 99-262 (287)
212 PF01739 CheR: CheR methyltran 96.7 0.012 2.5E-07 50.6 9.1 106 41-146 31-175 (196)
213 PF08123 DOT1: Histone methyla 96.7 0.0084 1.8E-07 51.9 8.0 107 36-146 37-158 (205)
214 KOG3010 Methyltransferase [Gen 96.7 0.0028 6E-08 56.7 5.0 107 30-144 21-135 (261)
215 PF01728 FtsJ: FtsJ-like methy 96.6 0.0065 1.4E-07 50.2 6.7 103 29-146 6-139 (181)
216 COG1352 CheR Methylase of chem 96.6 0.014 3E-07 52.7 9.2 106 41-146 96-241 (268)
217 COG4976 Predicted methyltransf 96.6 0.0018 3.9E-08 57.8 3.2 106 29-146 110-225 (287)
218 KOG1562 Spermidine synthase [A 96.6 0.011 2.4E-07 54.4 8.2 111 36-151 116-243 (337)
219 TIGR00478 tly hemolysin TlyA f 96.5 0.0063 1.4E-07 53.5 6.4 89 41-143 75-168 (228)
220 KOG3420 Predicted RNA methylas 96.4 0.0043 9.3E-08 52.1 4.1 92 24-121 27-122 (185)
221 PF05891 Methyltransf_PK: AdoM 96.4 0.0092 2E-07 52.4 6.3 117 29-151 38-167 (218)
222 PF12147 Methyltransf_20: Puta 96.4 0.075 1.6E-06 48.8 12.3 123 25-151 119-254 (311)
223 TIGR00006 S-adenosyl-methyltra 96.2 0.032 7E-07 51.2 9.5 81 41-126 20-105 (305)
224 COG0500 SmtA SAM-dependent met 96.0 0.13 2.7E-06 36.6 9.8 106 37-148 43-157 (257)
225 PF06080 DUF938: Protein of un 96.0 0.054 1.2E-06 47.2 9.1 103 44-151 28-147 (204)
226 PF02005 TRM: N2,N2-dimethylgu 96.0 0.039 8.3E-07 52.0 8.8 101 41-146 49-154 (377)
227 COG3510 CmcI Cephalosporin hyd 95.9 0.043 9.3E-07 48.0 8.2 115 24-146 52-180 (237)
228 PF04445 SAM_MT: Putative SAM- 95.8 0.027 5.9E-07 49.9 6.6 73 44-122 78-160 (234)
229 KOG1122 tRNA and rRNA cytosine 95.6 0.058 1.3E-06 51.7 8.5 100 43-146 243-371 (460)
230 COG0293 FtsJ 23S rRNA methylas 95.4 0.053 1.2E-06 47.2 6.9 96 41-151 45-164 (205)
231 COG2384 Predicted SAM-dependen 95.4 0.093 2E-06 46.3 8.4 94 33-131 7-104 (226)
232 COG3897 Predicted methyltransf 95.3 0.037 7.9E-07 48.3 5.6 98 39-145 77-179 (218)
233 TIGR02987 met_A_Alw26 type II 95.3 0.084 1.8E-06 51.1 8.5 92 26-120 9-119 (524)
234 PF02384 N6_Mtase: N-6 DNA Met 95.2 0.052 1.1E-06 48.5 6.4 93 25-120 30-132 (311)
235 PF05971 Methyltransf_10: Prot 95.0 0.078 1.7E-06 48.6 7.0 113 3-119 43-183 (299)
236 COG1867 TRM1 N2,N2-dimethylgua 95.0 0.18 4E-06 47.6 9.4 97 42-144 53-152 (380)
237 KOG1541 Predicted protein carb 94.9 0.088 1.9E-06 47.0 6.8 109 24-144 32-158 (270)
238 COG1064 AdhP Zn-dependent alco 94.9 0.1 2.3E-06 48.6 7.6 98 39-148 164-261 (339)
239 PF01861 DUF43: Protein of unk 94.9 0.32 6.9E-06 43.5 10.3 113 24-142 24-145 (243)
240 KOG2899 Predicted methyltransf 94.9 0.043 9.3E-07 49.5 4.8 151 32-188 48-257 (288)
241 PRK13699 putative methylase; P 94.7 0.045 9.7E-07 47.8 4.5 48 97-144 2-70 (227)
242 PF03291 Pox_MCEL: mRNA cappin 94.7 0.15 3.2E-06 47.2 8.0 98 41-145 62-185 (331)
243 PF05430 Methyltransf_30: S-ad 94.5 0.033 7.1E-07 44.6 2.9 52 96-147 32-91 (124)
244 KOG2187 tRNA uracil-5-methyltr 94.4 0.11 2.4E-06 50.9 6.8 105 24-135 362-478 (534)
245 PRK09880 L-idonate 5-dehydroge 94.4 0.39 8.5E-06 43.2 10.1 95 41-147 169-267 (343)
246 PF01269 Fibrillarin: Fibrilla 93.9 0.46 9.9E-06 42.1 9.1 95 42-143 74-175 (229)
247 PRK11760 putative 23S rRNA C24 93.4 0.59 1.3E-05 44.0 9.4 95 24-133 184-289 (357)
248 COG0116 Predicted N6-adenine-s 93.3 0.37 8.1E-06 45.6 7.9 76 71-147 256-347 (381)
249 COG0275 Predicted S-adenosylme 93.3 0.27 5.8E-06 45.4 6.8 68 57-126 37-109 (314)
250 PF04378 RsmJ: Ribosomal RNA s 93.1 0.35 7.5E-06 43.2 7.1 118 24-150 41-169 (245)
251 KOG1501 Arginine N-methyltrans 92.7 0.46 1E-05 46.3 7.7 89 8-106 29-127 (636)
252 cd08294 leukotriene_B4_DH_like 92.7 1.3 2.8E-05 38.9 10.1 96 37-144 139-239 (329)
253 PLN03154 putative allyl alcoho 92.5 1.4 3E-05 40.0 10.4 94 40-144 157-256 (348)
254 PF01262 AlaDh_PNT_C: Alanine 92.1 0.15 3.3E-06 42.0 3.3 103 37-148 15-140 (168)
255 PF12242 Eno-Rase_NADH_b: NAD( 92.1 0.45 9.7E-06 35.5 5.4 23 33-55 30-52 (78)
256 PF07091 FmrO: Ribosomal RNA m 92.1 0.56 1.2E-05 42.1 7.0 86 27-119 90-177 (251)
257 PF05050 Methyltransf_21: Meth 92.0 0.35 7.5E-06 38.1 5.2 42 47-88 1-42 (167)
258 PRK11524 putative methyltransf 92.0 0.21 4.5E-06 44.8 4.2 49 97-145 9-79 (284)
259 cd08293 PTGR2 Prostaglandin re 92.0 1.5 3.2E-05 39.0 9.7 92 43-144 156-252 (345)
260 PRK06176 cystathionine gamma-s 91.7 1.9 4.1E-05 40.2 10.4 123 24-151 47-176 (380)
261 KOG1500 Protein arginine N-met 91.7 0.55 1.2E-05 44.5 6.7 90 41-141 177-277 (517)
262 PF06962 rRNA_methylase: Putat 91.6 1.1 2.3E-05 36.9 7.7 78 71-151 1-95 (140)
263 KOG1975 mRNA cap methyltransfe 91.6 0.85 1.8E-05 42.8 7.8 102 39-145 115-236 (389)
264 PF02254 TrkA_N: TrkA-N domain 91.4 0.44 9.5E-06 36.0 4.9 79 57-143 9-93 (116)
265 KOG3178 Hydroxyindole-O-methyl 91.3 0.82 1.8E-05 42.8 7.5 97 42-151 178-281 (342)
266 PF00107 ADH_zinc_N: Zinc-bind 91.2 0.23 5.1E-06 38.0 3.3 82 57-149 5-92 (130)
267 PF00072 Response_reg: Respons 91.2 1.4 3E-05 32.1 7.3 73 72-146 1-80 (112)
268 KOG2793 Putative N2,N2-dimethy 91.2 0.59 1.3E-05 41.8 6.2 87 41-133 86-185 (248)
269 PF01795 Methyltransf_5: MraW 91.0 0.34 7.3E-06 44.7 4.6 82 40-126 19-106 (310)
270 TIGR00518 alaDH alanine dehydr 91.0 1 2.2E-05 42.1 7.9 97 40-144 165-265 (370)
271 TIGR03439 methyl_EasF probable 90.9 4.7 0.0001 37.2 12.1 105 36-143 70-195 (319)
272 COG1889 NOP1 Fibrillarin-like 90.8 2.4 5.2E-05 37.5 9.4 97 40-144 75-179 (231)
273 PF03141 Methyltransf_29: Puta 90.8 0.26 5.7E-06 48.1 3.9 96 40-146 116-219 (506)
274 cd08281 liver_ADH_like1 Zinc-d 90.7 1.6 3.5E-05 39.8 8.8 91 42-144 192-288 (371)
275 PRK08247 cystathionine gamma-s 90.3 4.6 0.0001 37.2 11.6 121 24-149 49-176 (366)
276 KOG0053 Cystathionine beta-lya 90.2 2.9 6.4E-05 40.1 10.3 124 24-151 74-204 (409)
277 TIGR03451 mycoS_dep_FDH mycoth 90.1 2 4.4E-05 38.9 8.9 94 40-145 175-275 (358)
278 cd08254 hydroxyacyl_CoA_DH 6-h 90.1 2.6 5.5E-05 36.9 9.3 93 40-144 164-261 (338)
279 TIGR02825 B4_12hDH leukotriene 90.1 3.6 7.9E-05 36.4 10.3 94 40-145 137-236 (325)
280 cd08243 quinone_oxidoreductase 90.0 5 0.00011 34.6 10.9 94 39-144 140-236 (320)
281 PRK08114 cystathionine beta-ly 89.9 9.2 0.0002 36.2 13.4 123 24-151 59-191 (395)
282 cd08295 double_bond_reductase_ 89.9 4.2 9.1E-05 36.3 10.6 95 39-144 149-249 (338)
283 cd05292 LDH_2 A subgroup of L- 89.8 5.6 0.00012 36.1 11.4 74 44-123 2-77 (308)
284 PLN02827 Alcohol dehydrogenase 89.7 3 6.5E-05 38.4 9.8 95 39-144 191-293 (378)
285 PRK06223 malate dehydrogenase; 89.7 5.8 0.00013 35.5 11.4 97 43-146 3-120 (307)
286 cd00300 LDH_like L-lactate deh 89.3 5.1 0.00011 36.2 10.7 72 47-124 3-77 (300)
287 cd08291 ETR_like_1 2-enoyl thi 89.2 5.6 0.00012 35.2 10.8 92 42-144 143-240 (324)
288 TIGR01007 eps_fam capsular exo 89.1 2.9 6.3E-05 34.9 8.5 46 39-84 14-61 (204)
289 PRK08064 cystathionine beta-ly 89.0 6.3 0.00014 36.8 11.4 123 24-151 51-180 (390)
290 PRK09424 pntA NAD(P) transhydr 88.6 2.9 6.3E-05 41.1 9.2 100 39-147 162-286 (509)
291 COG1063 Tdh Threonine dehydrog 88.5 4.6 9.9E-05 37.2 10.1 98 44-151 171-274 (350)
292 PRK07671 cystathionine beta-ly 88.4 5.6 0.00012 36.9 10.7 123 24-151 47-176 (377)
293 cd01412 SIRT5_Af1_CobB SIRT5_A 88.2 0.87 1.9E-05 39.3 4.9 70 31-111 154-223 (224)
294 TIGR03201 dearomat_had 6-hydro 88.2 3.4 7.3E-05 37.2 8.9 94 40-144 165-270 (349)
295 cd01339 LDH-like_MDH L-lactate 87.8 2.4 5.3E-05 38.0 7.6 92 47-146 3-116 (300)
296 PRK07810 O-succinylhomoserine 87.7 8.4 0.00018 36.2 11.5 124 24-151 67-197 (403)
297 PRK13512 coenzyme A disulfide 87.7 8.3 0.00018 36.3 11.5 113 30-148 136-265 (438)
298 PF01053 Cys_Met_Meta_PP: Cys/ 87.5 3.6 7.8E-05 38.8 8.9 124 24-151 52-183 (386)
299 cd08283 FDH_like_1 Glutathione 87.5 4.2 9.1E-05 37.4 9.2 76 38-122 181-262 (386)
300 TIGR00561 pntA NAD(P) transhyd 87.3 3 6.6E-05 41.0 8.5 95 39-143 161-281 (511)
301 PRK05703 flhF flagellar biosyn 87.2 4.5 9.8E-05 38.6 9.4 79 42-122 221-308 (424)
302 PRK10309 galactitol-1-phosphat 87.0 5.3 0.00011 35.8 9.3 96 41-147 160-261 (347)
303 cd08230 glucose_DH Glucose deh 86.9 5.7 0.00012 35.8 9.5 92 41-145 172-268 (355)
304 cd08290 ETR 2-enoyl thioester 86.9 6.3 0.00014 34.8 9.7 99 39-144 144-249 (341)
305 TIGR03366 HpnZ_proposed putati 86.8 5.6 0.00012 34.7 9.2 93 42-148 121-220 (280)
306 cd02037 MRP-like MRP (Multiple 86.7 1.7 3.6E-05 35.3 5.5 75 52-133 11-87 (169)
307 PF07015 VirC1: VirC1 protein; 86.7 1.3 2.8E-05 39.3 5.1 69 52-123 13-93 (231)
308 PRK12826 3-ketoacyl-(acyl-carr 86.6 3.9 8.4E-05 34.2 7.8 80 40-123 4-93 (251)
309 PRK05967 cystathionine beta-ly 86.3 11 0.00023 35.8 11.3 123 24-151 61-191 (395)
310 cd08237 ribitol-5-phosphate_DH 86.3 7.8 0.00017 34.9 10.1 91 41-145 163-255 (341)
311 PRK13771 putative alcohol dehy 86.2 8.6 0.00019 33.8 10.1 92 40-143 161-252 (334)
312 PRK00066 ldh L-lactate dehydro 86.2 13 0.00028 34.0 11.5 78 40-123 4-83 (315)
313 PF03807 F420_oxidored: NADP o 85.9 3.3 7.2E-05 30.1 6.3 87 45-144 2-92 (96)
314 PRK12475 thiamine/molybdopteri 85.7 6.4 0.00014 36.4 9.4 78 41-122 23-125 (338)
315 PRK06172 short chain dehydroge 85.7 4.9 0.00011 34.0 8.0 78 41-122 6-93 (253)
316 PRK10310 PTS system galactitol 85.6 5.4 0.00012 30.1 7.4 55 44-121 4-58 (94)
317 cd00650 LDH_MDH_like NAD-depen 85.5 9.3 0.0002 33.5 9.9 73 47-123 3-80 (263)
318 PHA02518 ParA-like protein; Pr 85.4 2 4.4E-05 35.4 5.5 71 52-124 12-87 (211)
319 cd05291 HicDH_like L-2-hydroxy 85.4 17 0.00037 32.8 11.8 75 43-123 1-78 (306)
320 cd00401 AdoHcyase S-adenosyl-L 85.3 7.3 0.00016 37.3 9.8 93 32-144 188-287 (413)
321 cd08238 sorbose_phosphate_red 84.6 5.6 0.00012 37.0 8.5 98 43-143 177-286 (410)
322 TIGR03499 FlhF flagellar biosy 84.5 2.7 5.7E-05 37.7 6.1 81 41-122 193-281 (282)
323 PTZ00117 malate dehydrogenase; 84.5 16 0.00034 33.4 11.3 99 40-146 3-123 (319)
324 TIGR01328 met_gam_lyase methio 84.5 11 0.00024 35.2 10.4 123 24-151 56-186 (391)
325 KOG2360 Proliferation-associat 84.4 1.1 2.4E-05 42.7 3.7 94 24-121 196-292 (413)
326 PRK07582 cystathionine gamma-l 84.3 17 0.00036 33.6 11.5 118 24-149 48-172 (366)
327 COG0604 Qor NADPH:quinone redu 84.1 6.9 0.00015 35.8 8.8 95 39-145 140-240 (326)
328 PRK07478 short chain dehydroge 84.0 9.1 0.0002 32.4 9.0 78 41-122 5-92 (254)
329 PLN02740 Alcohol dehydrogenase 84.0 9.9 0.00021 34.8 9.8 93 40-144 197-298 (381)
330 cd08289 MDR_yhfp_like Yhfp put 84.0 17 0.00038 31.6 11.0 91 42-144 147-241 (326)
331 TIGR00853 pts-lac PTS system, 84.0 7.4 0.00016 29.5 7.5 66 41-130 2-67 (95)
332 PRK05939 hypothetical protein; 83.8 20 0.00043 33.7 11.9 122 24-151 44-173 (397)
333 PRK06194 hypothetical protein; 83.8 8.3 0.00018 33.3 8.8 79 41-123 5-93 (287)
334 PRK07666 fabG 3-ketoacyl-(acyl 83.6 9.3 0.0002 31.9 8.8 78 41-122 6-93 (239)
335 PRK07523 gluconate 5-dehydroge 83.5 6 0.00013 33.5 7.7 78 41-122 9-96 (255)
336 PRK07109 short chain dehydroge 83.4 8.5 0.00018 34.9 9.0 79 40-122 6-94 (334)
337 TIGR01963 PHB_DH 3-hydroxybuty 83.4 6.7 0.00015 32.9 7.9 76 43-122 2-87 (255)
338 KOG1269 SAM-dependent methyltr 83.3 2.7 5.9E-05 39.6 5.8 107 35-147 104-216 (364)
339 PRK05867 short chain dehydroge 83.3 7.9 0.00017 32.8 8.3 78 41-122 8-95 (253)
340 PRK08217 fabG 3-ketoacyl-(acyl 83.2 8.8 0.00019 32.0 8.5 78 41-122 4-91 (253)
341 TIGR03385 CoA_CoA_reduc CoA-di 83.2 23 0.00051 32.9 12.1 113 28-146 123-255 (427)
342 PRK09422 ethanol-active dehydr 83.1 11 0.00024 33.2 9.4 96 38-144 159-259 (338)
343 cd08244 MDR_enoyl_red Possible 82.8 18 0.0004 31.3 10.6 96 37-143 138-238 (324)
344 COG0784 CheY FOG: CheY-like re 82.7 5.5 0.00012 29.6 6.4 55 69-124 5-62 (130)
345 TIGR02080 O_succ_thio_ly O-suc 82.7 18 0.0004 33.6 11.2 123 24-151 48-178 (382)
346 TIGR01202 bchC 2-desacetyl-2-h 82.6 6.9 0.00015 34.8 8.0 84 41-144 144-229 (308)
347 PRK07904 short chain dehydroge 82.6 6.4 0.00014 33.9 7.6 79 39-121 5-95 (253)
348 PRK05808 3-hydroxybutyryl-CoA 82.6 2.9 6.3E-05 36.9 5.5 94 43-145 4-117 (282)
349 PRK06949 short chain dehydroge 82.4 9.5 0.00021 32.1 8.4 78 41-122 8-95 (258)
350 PRK09028 cystathionine beta-ly 82.3 25 0.00054 33.2 12.0 123 24-151 58-188 (394)
351 PRK12726 flagellar biosynthesi 82.2 12 0.00027 35.9 9.8 83 40-124 204-296 (407)
352 TIGR01329 cysta_beta_ly_E cyst 82.2 23 0.0005 32.8 11.6 123 24-151 44-173 (378)
353 PRK08133 O-succinylhomoserine 82.1 19 0.00041 33.6 11.0 123 24-151 58-188 (390)
354 PRK05866 short chain dehydroge 82.0 7.7 0.00017 34.3 8.0 77 42-122 40-126 (293)
355 PRK07890 short chain dehydroge 81.8 11 0.00025 31.7 8.7 79 41-123 4-92 (258)
356 PF03686 UPF0146: Uncharacteri 81.7 1.5 3.3E-05 35.5 3.1 87 31-135 3-93 (127)
357 PRK09496 trkA potassium transp 81.5 5.4 0.00012 37.2 7.2 73 41-122 230-306 (453)
358 COG1255 Uncharacterized protei 81.5 2.5 5.4E-05 34.2 4.1 88 31-136 3-94 (129)
359 PRK08643 acetoin reductase; Va 81.4 8.9 0.00019 32.4 7.9 75 43-121 3-87 (256)
360 PRK07677 short chain dehydroge 81.3 8.1 0.00018 32.7 7.7 76 43-122 2-87 (252)
361 cd05286 QOR2 Quinone oxidoredu 81.3 17 0.00038 30.8 9.7 95 37-143 132-232 (320)
362 cd08296 CAD_like Cinnamyl alco 81.2 15 0.00032 32.7 9.6 95 38-144 160-257 (333)
363 cd08300 alcohol_DH_class_III c 81.2 17 0.00036 33.1 10.1 94 39-144 184-286 (368)
364 PRK06084 O-acetylhomoserine am 81.2 9.5 0.00021 36.2 8.8 123 24-151 55-185 (425)
365 PRK08945 putative oxoacyl-(acy 81.1 6.7 0.00014 33.1 7.0 80 39-122 9-101 (247)
366 PLN02545 3-hydroxybutyryl-CoA 81.1 13 0.00028 33.1 9.1 97 42-145 4-118 (295)
367 PRK08248 O-acetylhomoserine am 81.0 15 0.00033 34.9 10.1 124 24-151 61-191 (431)
368 KOG1198 Zinc-binding oxidoredu 80.9 6.1 0.00013 36.8 7.2 76 43-127 159-238 (347)
369 cd05188 MDR Medium chain reduc 80.9 12 0.00025 31.3 8.3 93 40-144 133-230 (271)
370 COG5459 Predicted rRNA methyla 80.8 2.5 5.4E-05 40.3 4.6 101 40-144 112-223 (484)
371 TIGR02822 adh_fam_2 zinc-bindi 80.8 21 0.00045 32.1 10.5 86 41-146 165-254 (329)
372 TIGR02415 23BDH acetoin reduct 80.4 13 0.00029 31.1 8.7 75 43-121 1-85 (254)
373 cd08286 FDH_like_ADH2 formalde 80.4 18 0.00039 32.1 9.9 93 40-144 165-264 (345)
374 TIGR01763 MalateDH_bact malate 80.4 24 0.00052 32.0 10.8 71 44-123 3-79 (305)
375 PRK07503 methionine gamma-lyas 80.4 19 0.0004 33.8 10.3 123 24-151 62-192 (403)
376 PRK08574 cystathionine gamma-s 80.4 28 0.0006 32.5 11.4 123 24-151 50-179 (385)
377 KOG1253 tRNA methyltransferase 80.3 1.9 4.2E-05 42.3 3.7 109 32-145 100-215 (525)
378 PRK07832 short chain dehydroge 80.3 30 0.00066 29.7 11.0 76 43-122 1-87 (272)
379 PF02636 Methyltransf_28: Puta 80.2 4.8 0.0001 35.2 6.0 49 42-92 19-73 (252)
380 PRK06139 short chain dehydroge 80.0 9.6 0.00021 34.7 8.1 79 40-122 5-93 (330)
381 PRK06914 short chain dehydroge 80.0 8.9 0.00019 33.0 7.6 76 43-122 4-90 (280)
382 PLN02602 lactate dehydrogenase 80.0 35 0.00075 31.9 11.9 78 41-124 36-116 (350)
383 PRK13656 trans-2-enoyl-CoA red 80.0 11 0.00024 36.1 8.6 82 40-124 39-142 (398)
384 PRK07454 short chain dehydroge 80.0 14 0.0003 30.9 8.6 78 41-122 5-92 (241)
385 PRK06234 methionine gamma-lyas 80.0 33 0.00072 32.0 11.9 122 25-151 62-193 (400)
386 PRK08339 short chain dehydroge 79.9 14 0.0003 31.9 8.8 79 41-122 7-94 (263)
387 COG1748 LYS9 Saccharopine dehy 79.9 6.9 0.00015 37.3 7.3 83 43-133 2-88 (389)
388 TIGR02818 adh_III_F_hyde S-(hy 79.8 16 0.00034 33.3 9.5 93 40-144 184-285 (368)
389 cd05278 FDH_like Formaldehyde 79.7 14 0.0003 32.6 8.9 93 40-144 166-265 (347)
390 PRK07688 thiamine/molybdopteri 79.7 20 0.00043 33.2 10.1 86 41-130 23-133 (339)
391 PRK12727 flagellar biosynthesi 79.7 21 0.00046 35.6 10.8 92 29-124 328-439 (559)
392 PRK07502 cyclohexadienyl dehyd 79.6 22 0.00047 31.8 10.1 92 42-145 6-98 (307)
393 PRK05613 O-acetylhomoserine am 79.5 56 0.0012 31.3 13.4 124 24-151 66-197 (437)
394 PRK08045 cystathionine gamma-s 79.4 23 0.0005 33.1 10.6 122 24-151 49-179 (386)
395 TIGR01326 OAH_OAS_sulfhy OAH/O 79.4 25 0.00054 33.1 10.9 124 23-151 53-184 (418)
396 PRK07024 short chain dehydroge 79.4 7.8 0.00017 33.0 6.9 75 43-122 3-87 (257)
397 PRK06035 3-hydroxyacyl-CoA deh 79.4 6.5 0.00014 34.9 6.7 100 42-147 3-121 (291)
398 PRK12429 3-hydroxybutyrate deh 79.4 13 0.00029 31.1 8.3 78 41-122 3-90 (258)
399 PRK06138 short chain dehydroge 79.3 12 0.00027 31.2 8.1 77 41-122 4-90 (252)
400 PRK09291 short chain dehydroge 79.3 6.9 0.00015 33.0 6.5 76 43-122 3-82 (257)
401 cd05293 LDH_1 A subgroup of L- 79.2 43 0.00093 30.6 12.1 75 42-122 3-80 (312)
402 PRK06197 short chain dehydroge 79.2 15 0.00031 32.4 8.8 79 41-122 15-104 (306)
403 PRK09496 trkA potassium transp 79.1 12 0.00027 34.8 8.7 90 44-143 2-97 (453)
404 TIGR02356 adenyl_thiF thiazole 78.8 16 0.00035 31.0 8.6 78 40-122 19-119 (202)
405 KOG2352 Predicted spermine/spe 78.8 1.1 2.4E-05 43.7 1.6 109 35-149 291-419 (482)
406 PRK00771 signal recognition pa 78.6 14 0.00031 35.6 9.1 104 41-146 94-215 (437)
407 cd08301 alcohol_DH_plants Plan 78.6 20 0.00042 32.5 9.6 94 39-144 185-287 (369)
408 PRK07097 gluconate 5-dehydroge 78.6 13 0.00028 31.8 8.1 79 41-123 9-97 (265)
409 cd05282 ETR_like 2-enoyl thioe 78.5 22 0.00049 30.7 9.7 93 40-143 137-234 (323)
410 cd08292 ETR_like_2 2-enoyl thi 78.5 31 0.00068 29.9 10.6 95 39-144 137-236 (324)
411 PRK12939 short chain dehydroge 78.5 15 0.00032 30.6 8.3 78 41-122 6-93 (250)
412 PRK05968 hypothetical protein; 78.4 44 0.00096 31.1 12.1 123 24-151 60-189 (389)
413 PRK05876 short chain dehydroge 78.3 16 0.00035 31.8 8.8 79 40-122 4-92 (275)
414 PRK06181 short chain dehydroge 78.2 16 0.00035 31.0 8.5 76 43-122 2-87 (263)
415 COG1565 Uncharacterized conser 78.1 11 0.00024 35.8 7.9 69 24-92 49-132 (370)
416 PLN02586 probable cinnamyl alc 78.1 41 0.00088 30.6 11.6 90 42-144 184-276 (360)
417 PF01408 GFO_IDH_MocA: Oxidore 78.1 26 0.00057 26.1 9.6 80 44-133 2-82 (120)
418 TIGR03206 benzo_BadH 2-hydroxy 77.9 14 0.0003 30.9 7.9 76 43-122 4-89 (250)
419 PRK08085 gluconate 5-dehydroge 77.9 20 0.00043 30.3 9.0 79 40-122 7-95 (254)
420 TIGR01969 minD_arch cell divis 77.8 5.4 0.00012 33.8 5.5 20 112-131 107-126 (251)
421 PRK13394 3-hydroxybutyrate deh 77.8 13 0.00029 31.3 7.8 76 42-121 7-92 (262)
422 PRK08861 cystathionine gamma-s 77.7 25 0.00054 33.0 10.3 123 24-151 50-180 (388)
423 TIGR01324 cysta_beta_ly_B cyst 77.5 38 0.00082 31.6 11.4 123 24-151 47-177 (377)
424 PLN02494 adenosylhomocysteinas 77.4 25 0.00054 34.5 10.4 97 31-144 239-339 (477)
425 cd01078 NAD_bind_H4MPT_DH NADP 77.2 40 0.00087 27.9 10.7 105 40-150 26-132 (194)
426 PRK08293 3-hydroxybutyryl-CoA 77.1 41 0.00089 29.8 11.1 96 42-147 3-120 (287)
427 PRK01438 murD UDP-N-acetylmura 77.0 12 0.00026 35.5 8.1 73 40-122 14-87 (480)
428 PRK08340 glucose-1-dehydrogena 76.9 14 0.0003 31.5 7.8 74 44-122 2-85 (259)
429 PRK05994 O-acetylhomoserine am 76.9 31 0.00067 32.7 10.8 124 24-151 60-190 (427)
430 PRK08249 cystathionine gamma-s 76.9 25 0.00054 33.0 10.1 123 24-151 61-191 (398)
431 cd00614 CGS_like CGS_like: Cys 76.9 28 0.00061 31.9 10.2 123 24-151 37-167 (369)
432 cd05288 PGDH Prostaglandin deh 76.7 32 0.0007 29.9 10.2 92 41-143 145-241 (329)
433 PTZ00082 L-lactate dehydrogena 76.6 36 0.00079 31.2 10.8 100 39-146 3-129 (321)
434 PRK06731 flhF flagellar biosyn 76.6 18 0.00038 32.6 8.6 82 41-126 74-167 (270)
435 KOG0024 Sorbitol dehydrogenase 76.5 13 0.00029 34.9 7.9 108 24-143 143-270 (354)
436 TIGR01425 SRP54_euk signal rec 76.4 9.3 0.0002 36.8 7.1 104 42-146 100-222 (429)
437 PRK08644 thiamine biosynthesis 76.2 16 0.00034 31.5 7.9 79 38-121 24-124 (212)
438 PRK10037 cell division protein 76.1 8.4 0.00018 33.4 6.3 29 53-81 14-42 (250)
439 PRK07050 cystathionine beta-ly 76.0 49 0.0011 30.9 11.8 123 24-151 62-192 (394)
440 PRK07340 ornithine cyclodeamin 75.9 39 0.00085 30.6 10.8 112 26-149 109-220 (304)
441 cd08285 NADP_ADH NADP(H)-depen 75.9 28 0.00061 31.0 9.8 98 39-148 164-268 (351)
442 cd01487 E1_ThiF_like E1_ThiF_l 75.8 16 0.00036 30.3 7.7 73 44-121 1-95 (174)
443 cd05276 p53_inducible_oxidored 75.8 26 0.00057 29.7 9.2 97 39-146 137-238 (323)
444 PRK08277 D-mannonate oxidoredu 75.7 22 0.00049 30.5 8.8 78 41-122 9-96 (278)
445 PRK07812 O-acetylhomoserine am 75.7 45 0.00097 31.9 11.6 124 24-151 66-197 (436)
446 PRK06130 3-hydroxybutyryl-CoA 75.6 37 0.00081 30.2 10.5 98 40-147 2-115 (311)
447 cd00757 ThiF_MoeB_HesA_family 75.6 23 0.00049 30.5 8.8 87 40-130 19-128 (228)
448 PLN02509 cystathionine beta-ly 75.5 56 0.0012 31.7 12.2 121 26-151 132-259 (464)
449 PRK06153 hypothetical protein; 75.5 32 0.00069 33.0 10.3 92 36-131 170-284 (393)
450 TIGR01746 Thioester-redct thio 75.4 18 0.00039 31.7 8.3 77 45-123 2-98 (367)
451 KOG2912 Predicted DNA methylas 75.4 13 0.00027 35.2 7.4 126 3-133 44-196 (419)
452 COG0569 TrkA K+ transport syst 75.3 9.1 0.0002 33.2 6.2 97 43-148 1-104 (225)
453 PRK05650 short chain dehydroge 75.2 20 0.00044 30.7 8.4 76 43-122 1-86 (270)
454 PF04672 Methyltransf_19: S-ad 75.2 6.2 0.00013 35.8 5.3 122 28-151 51-195 (267)
455 PRK07814 short chain dehydroge 75.0 23 0.00049 30.3 8.7 78 41-122 9-96 (263)
456 PRK05565 fabG 3-ketoacyl-(acyl 74.9 22 0.00047 29.5 8.3 77 42-122 5-92 (247)
457 PRK13849 putative crown gall t 74.9 9.5 0.00021 33.2 6.3 77 53-131 14-101 (231)
458 PLN02242 methionine gamma-lyas 74.8 32 0.00069 32.6 10.3 121 24-149 73-203 (418)
459 TIGR01005 eps_transp_fam exopo 74.8 16 0.00035 37.0 8.7 45 40-84 544-590 (754)
460 PRK07576 short chain dehydroge 74.8 18 0.00038 31.1 7.9 77 41-121 8-94 (264)
461 PRK08213 gluconate 5-dehydroge 74.5 16 0.00034 31.0 7.5 78 41-122 11-98 (259)
462 PRK10083 putative oxidoreducta 74.4 49 0.0011 29.1 10.8 94 40-144 159-257 (339)
463 PRK06125 short chain dehydroge 74.1 21 0.00045 30.3 8.2 78 42-122 7-90 (259)
464 PRK07049 methionine gamma-lyas 74.1 34 0.00073 32.5 10.2 120 24-149 80-220 (427)
465 COG0626 MetC Cystathionine bet 74.1 27 0.00059 33.3 9.5 124 24-151 60-191 (396)
466 PRK08134 O-acetylhomoserine am 73.9 44 0.00095 31.9 11.0 122 24-151 61-191 (433)
467 PRK05854 short chain dehydroge 73.9 20 0.00043 32.0 8.3 79 41-122 13-102 (313)
468 PLN00106 malate dehydrogenase 73.8 27 0.00058 32.3 9.2 81 40-125 16-98 (323)
469 cd08277 liver_alcohol_DH_like 73.8 38 0.00083 30.6 10.2 93 40-144 183-284 (365)
470 PRK06702 O-acetylhomoserine am 73.7 50 0.0011 31.7 11.3 118 26-149 60-187 (432)
471 PRK06249 2-dehydropantoate 2-r 73.7 29 0.00063 31.2 9.3 91 42-143 5-103 (313)
472 cd02040 NifH NifH gene encodes 73.7 13 0.00028 32.1 6.8 26 56-81 16-41 (270)
473 cd05564 PTS_IIB_chitobiose_lic 73.6 18 0.00038 27.3 6.7 37 85-122 19-55 (96)
474 cd08239 THR_DH_like L-threonin 73.5 17 0.00038 32.2 7.7 92 40-144 162-260 (339)
475 PRK08703 short chain dehydroge 73.4 21 0.00045 29.9 7.8 79 40-122 4-96 (239)
476 PTZ00354 alcohol dehydrogenase 73.4 37 0.0008 29.4 9.7 92 41-144 140-238 (334)
477 COG3007 Uncharacterized paraqu 73.4 8.5 0.00018 36.0 5.7 80 40-122 39-140 (398)
478 TIGR03590 PseG pseudaminic aci 73.4 26 0.00056 31.1 8.8 91 53-148 15-113 (279)
479 PRK08589 short chain dehydroge 73.3 29 0.00064 29.9 9.0 77 41-122 5-91 (272)
480 PRK12921 2-dehydropantoate 2-r 73.0 18 0.00039 31.8 7.7 91 44-144 2-100 (305)
481 cd08263 Zn_ADH10 Alcohol dehyd 72.9 22 0.00048 32.0 8.4 93 40-144 186-285 (367)
482 PRK06113 7-alpha-hydroxysteroi 72.8 20 0.00044 30.3 7.8 77 42-122 11-97 (255)
483 cd08250 Mgc45594_like Mgc45594 72.7 40 0.00086 29.4 9.8 93 39-143 137-234 (329)
484 TIGR01627 A_thal_3515 uncharac 72.6 33 0.00072 30.4 9.0 60 24-89 22-81 (225)
485 PRK08762 molybdopterin biosynt 72.5 23 0.0005 32.9 8.6 87 40-130 133-242 (376)
486 cd00315 Cyt_C5_DNA_methylase C 72.5 8 0.00017 34.5 5.3 92 44-148 2-113 (275)
487 PF02153 PDH: Prephenate dehyd 72.4 14 0.0003 32.5 6.8 69 65-143 7-76 (258)
488 cd08297 CAD3 Cinnamyl alcohol 72.2 42 0.00092 29.6 9.9 97 38-144 162-263 (341)
489 cd02042 ParA ParA and ParB of 72.1 13 0.00027 27.4 5.6 17 114-130 40-56 (104)
490 TIGR01470 cysG_Nterm siroheme 72.0 20 0.00043 30.8 7.4 92 42-147 9-103 (205)
491 PLN02514 cinnamyl-alcohol dehy 71.9 64 0.0014 29.2 11.2 92 41-144 180-273 (357)
492 PRK08328 hypothetical protein; 71.6 20 0.00044 31.2 7.5 79 41-123 26-128 (231)
493 PRK08507 prephenate dehydrogen 71.5 27 0.00058 30.7 8.4 87 44-143 2-88 (275)
494 PRK06720 hypothetical protein; 71.5 32 0.00069 28.4 8.4 78 41-122 15-102 (169)
495 PRK07453 protochlorophyllide o 71.5 31 0.00066 30.6 8.9 78 41-122 5-92 (322)
496 cd08266 Zn_ADH_like1 Alcohol d 71.3 29 0.00062 29.9 8.5 93 39-143 164-262 (342)
497 PRK10754 quinone oxidoreductas 71.2 37 0.00081 29.6 9.3 92 41-143 140-236 (327)
498 cd01065 NAD_bind_Shikimate_DH 71.1 48 0.001 25.9 10.0 77 40-125 17-93 (155)
499 PRK08618 ornithine cyclodeamin 71.1 82 0.0018 28.6 12.4 110 29-148 114-223 (325)
500 TIGR01915 npdG NADPH-dependent 71.0 39 0.00086 28.7 9.1 85 44-135 2-90 (219)
No 1
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=100.00 E-value=2e-57 Score=391.16 Aligned_cols=213 Identities=62% Similarity=1.043 Sum_probs=194.4
Q ss_pred CccccChhHHHHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch
Q 027409 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER 80 (223)
Q Consensus 1 ~~~~w~~~~a~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e 80 (223)
||++||||+|++|||+||++|+...+|++++||+.|++.++||.|+|+.+..|.+++||+||.|+++|+|+++||.++++
T Consensus 1 mkl~WSpe~AtkAYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~ 80 (218)
T PF07279_consen 1 MKLVWSPENATKAYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQ 80 (218)
T ss_pred CcceeChhHHHHHHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChh
Confidence 89999999999999999999999999999999999999999999999988877667899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCce--EEEEecch-HHHhcCCCCccEEEEeCCCcccH-HHHHHhccCCCceEEEEeCCCCCCccccc
Q 027409 81 SRLAYVKAMYDVVGWV--SEVIVRQA-EEVMGELKGVDFLVVDCTSKDFA-RVLRFARFSNKGAVLAFKNAFQRSTSGLR 156 (223)
Q Consensus 81 ~~~~Ar~~~~~a~G~~--I~li~GdA-~evL~~L~~fDfVFIDa~K~~Y~-~~f~~~~~l~~GgvIV~DNvl~~g~~~~~ 156 (223)
.....++.+..+ |+. ++|+.|++ .+++++|...||++|||..++|. ++|+.+++.+.|+|||++|++.++...+.
T Consensus 81 ~~~~~~~~l~~~-~~~~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na~~r~~~~~~ 159 (218)
T PF07279_consen 81 SLSEYKKALGEA-GLSDVVEFVVGEAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNAFSRSTNGFS 159 (218)
T ss_pred hHHHHHHHHhhc-cccccceEEecCCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEeccccCCcCCcc
Confidence 999999999999 987 89999995 56899999999999999999999 99999998889999999999987655556
Q ss_pred cccccccccCCCceEEEEeecCCceEEEEEcccCCCCCCCCCCCcCccceEecccccCceeeee
Q 027409 157 WQGQGVLDRGTRVVRSVFLPVGQGLDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFR 220 (223)
Q Consensus 157 ~~~r~~v~~~~~~~~t~lLPiGDGl~vs~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (223)
|+. .++ +.+.++|++||||.||+|++...+.+.. ++++.|||||+|||+|||||||||
T Consensus 160 w~~--~~~-~~r~Vrsv~LPIG~GleVt~ig~~~~~~---~~~~~~srWi~~vD~~sGEeHv~R 217 (218)
T PF07279_consen 160 WRS--VLR-GRRVVRSVFLPIGKGLEVTRIGASGGSN---SSRRKKSRWIKHVDQCSGEEHVFR 217 (218)
T ss_pred HHH--hcC-CCCceeEEEeccCCCeEEEEEeecCCCC---CCCCCCccceEeeccCCCceeeec
Confidence 765 554 5678999999999999999999665433 455699999999999999999999
No 2
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=1.3e-44 Score=313.97 Aligned_cols=173 Identities=21% Similarity=0.243 Sum_probs=146.5
Q ss_pred HHHHHHHhhcccC-----------------CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEE
Q 027409 10 ASKAYIDTVKSCE-----------------NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARH 72 (223)
Q Consensus 10 a~~ayl~~l~~~~-----------------~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i 72 (223)
.-.+|+....+.. +++.|++|+||.+|+++.+||+||||||++|| ||||||.+... +|+|
T Consensus 11 ~l~~y~~~~~~~~~~~~~~~~~e~a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~Gy--Sal~mA~~l~~-~g~l 87 (219)
T COG4122 11 DLYDYLEALIPGEPPALLAELEEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGY--SALWMALALPD-DGRL 87 (219)
T ss_pred HHHHHHHhhcccCCchHHHHHHHHhHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCH--HHHHHHhhCCC-CCeE
Confidence 3457777777652 16679999999999999999999999999999 99999987654 7899
Q ss_pred EEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcC-C-CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 73 VCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGE-L-KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 73 ~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~-L-~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||||+||++++.||+||+++ |+. |+++. |||+++|.+ + ++||||||||+|.+|++||+.+ ++++|||+||+||
T Consensus 88 ~tiE~~~e~~~~A~~n~~~a-g~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 88 TTIERDEERAEIARENLAEA-GVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEEeCCHHHHHHHHHHHHHc-CCcceEEEEecCcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 99999999999999999999 998 99999 699999997 3 5899999999999999999966 6679999999999
Q ss_pred CCCCCc--cccccccccc----------cccCCCceEEEEeecCCceEEEEEc
Q 027409 147 AFQRST--SGLRWQGQGV----------LDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 147 vl~~g~--~~~~~~~r~~----------v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
|+++|. +....+.++. +. .+|+++++++|+|||++|++|.
T Consensus 167 vl~~G~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 167 VLFGGRVADPSIRDARTQVRGVRDFNDYLL-EDPRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred cccCCccCCccchhHHHHHHHHHHHHHHHh-hCcCceeEEEecCCceEEEeec
Confidence 999885 2210111111 22 5577999999999999999985
No 3
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=1.2e-44 Score=311.16 Aligned_cols=159 Identities=21% Similarity=0.257 Sum_probs=136.6
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 22 ENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 22 ~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
.++++|++|+||.+|+++.+||+||||||++|| ||+|||.+. +++|+|+|||+|+++++.|+++|+++ |++ |++
T Consensus 26 ~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~Gy--Sal~la~~l-~~~g~i~tiE~~~~~~~~A~~~~~~a-g~~~~I~~ 101 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRLTRPKRVLEIGTFTGY--SALWLAEAL-PEDGKITTIEIDPERAEIARENFRKA-GLDDRIEV 101 (205)
T ss_dssp GGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSH--HHHHHHHTS-TTTSEEEEEESSHHHHHHHHHHHHHT-TGGGGEEE
T ss_pred CCccCHHHHHHHHHHHHhcCCceEEEecccccc--HHHHHHHhh-cccceEEEecCcHHHHHHHHHHHHhc-CCCCcEEE
Confidence 357899999999999999999999999999999 999999874 56899999999999999999999999 997 999
Q ss_pred EecchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc-c---------ccccc
Q 027409 100 IVRQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG-L---------RWQGQ 160 (223)
Q Consensus 100 i~GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~-~---------~~~~r 160 (223)
+.|||+++|++| ++||||||||+|.+|..||+.+ +++++||+||+||++++|. .. . .++.
T Consensus 102 ~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~- 180 (205)
T PF01596_consen 102 IEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNE- 180 (205)
T ss_dssp EES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHH-
T ss_pred EEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHH-
Confidence 999999999976 2699999999999999999976 5669999999999999884 11 1 1222
Q ss_pred cccccCCCceEEEEeecCCceEEEEEc
Q 027409 161 GVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 161 ~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
.+. ++|++++++||+||||+|++|+
T Consensus 181 -~i~-~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 181 -YIA-NDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp -HHH-H-TTEEEEEECSTTEEEEEEE-
T ss_pred -HHH-hCCCeeEEEEEeCCeeEEEEEC
Confidence 243 3467999999999999999985
No 4
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=1.7e-42 Score=305.54 Aligned_cols=159 Identities=15% Similarity=0.196 Sum_probs=138.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.++|++|+||.+|++..+|++||||||++|| ||||||.+. +++|+|+|||.|+++++.|+++|+++ |+. |+++.
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~Gy--Sal~la~al-~~~g~v~tiE~~~~~~~~Ar~~~~~a-g~~~~I~~~~ 137 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGY--SLLATALAL-PEDGKILAMDINRENYELGLPVIQKA-GVAHKIDFRE 137 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEEeChhhH--HHHHHHhhC-CCCCEEEEEeCCHHHHHHHHHHHHHC-CCCCceEEEe
Confidence 5589999999999999999999999999999 899999874 56899999999999999999999999 987 99999
Q ss_pred cchHHHhcCC-------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc-c-cccc-c--------
Q 027409 102 RQAEEVMGEL-------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG-L-RWQG-Q-------- 160 (223)
Q Consensus 102 GdA~evL~~L-------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~-~-~~~~-r-------- 160 (223)
|||+++|++| ++||||||||+|.+|++||+.+ +++++||+||+||++|+|. +. . ..+. .
T Consensus 138 G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir 217 (247)
T PLN02589 138 GPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVL 217 (247)
T ss_pred ccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHH
Confidence 9999999986 3799999999999999999976 5669999999999999884 11 0 0000 0
Q ss_pred ---cccccCCCceEEEEeecCCceEEEEEc
Q 027409 161 ---GVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 161 ---~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
..+. .++++++++||+|||++|++|.
T Consensus 218 ~fn~~v~-~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 218 ELNKALA-ADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHHH-hCCCEEEEEEEeCCccEEEEEe
Confidence 0233 4577999999999999999986
No 5
>PLN02476 O-methyltransferase
Probab=100.00 E-value=1.7e-41 Score=303.63 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=138.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+++|++|+||.+|+++.+||+||||||++|| ||||+|.+. +++|+|+|||.|+++++.|++||+++ |++ |+++.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGy--Sal~lA~al-~~~G~V~TiE~d~e~~~~Ar~n~~~a-Gl~~~I~li~ 176 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGY--SSLAVALVL-PESGCLVACERDSNSLEVAKRYYELA-GVSHKVNVKH 176 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 7799999999999999999999999999999 999999864 55899999999999999999999999 998 99999
Q ss_pred cchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--ccc----------ccccccc
Q 027409 102 RQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SGL----------RWQGQGV 162 (223)
Q Consensus 102 GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~~----------~~~~r~~ 162 (223)
|||+++|+++ ++||||||||+|.+|++||+.+ +++++||+||+||++|+|. ++. .++. .
T Consensus 177 GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~--~ 254 (278)
T PLN02476 177 GLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNK--K 254 (278)
T ss_pred cCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHH--H
Confidence 9999999876 3799999999999999999976 5669999999999999884 110 1111 2
Q ss_pred cccCCCceEEEEeecCCceEEEEEc
Q 027409 163 LDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 163 v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
+. +++++++++||+|||++|++|+
T Consensus 255 v~-~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 255 LM-DDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred Hh-hCCCEEEEEEEeCCeeEEEEEC
Confidence 43 4577999999999999999984
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=1.3e-37 Score=271.29 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=136.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.+.|++|+||++|+++.+|++||||||++|| |++|||.+. +++|+|+|||+|+++++.|++||+++ |+. |+++.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~--s~l~la~~~-~~~g~v~tiD~d~~~~~~A~~n~~~~-gl~~~i~~~~ 126 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGY--SLLTTALAL-PEDGRITAIDIDKEAYEVGLEFIKKA-GVDHKINFIQ 126 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 6799999999999999999999999999999 899998764 55789999999999999999999999 987 99999
Q ss_pred cchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc---cccccc---------
Q 027409 102 RQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG---LRWQGQ--------- 160 (223)
Q Consensus 102 GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~---~~~~~r--------- 160 (223)
|||.+.|++| ++|||||+|++|.+|.+||+.+ +.++|||+||+||++|+|. +. ...+.+
T Consensus 127 gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~ 206 (234)
T PLN02781 127 SDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEF 206 (234)
T ss_pred ccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHH
Confidence 9999998875 3799999999999999999976 5679999999999999874 11 000000
Q ss_pred -cccccCCCceEEEEeecCCceEEEEEc
Q 027409 161 -GVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 161 -~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
..+. .++++++++||+|||++|++|.
T Consensus 207 ~~~i~-~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 207 NKLLA-SDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHHh-hCCCeEEEEEEeCCccEEEEEe
Confidence 0233 4567999999999999999985
No 7
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-36 Score=262.41 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=137.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 23 NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 23 ~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
+.++|+.|+|+.+|+++.+||+.||||+++|| |+|++|.|. +.+|+|+|||+|++.++.+.+.++.| |+. |+++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGy--SaL~~Alal-p~dGrv~a~eid~~~~~~~~~~~k~a-gv~~KI~~i 130 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGY--SALAVALAL-PEDGRVVAIEIDADAYEIGLELVKLA-GVDHKITFI 130 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCH--HHHHHHHhc-CCCceEEEEecChHHHHHhHHHHHhc-cccceeeee
Confidence 38999999999999999999999999999999 787888765 55999999999999999999999999 998 9999
Q ss_pred ecchHHHhcCC------CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCCCCCc---cc-------cccc---c-
Q 027409 101 VRQAEEVMGEL------KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQRST---SG-------LRWQ---G- 159 (223)
Q Consensus 101 ~GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g~---~~-------~~~~---~- 159 (223)
+|+|+|.|++| +.|||+|+||||.+|..|++ +++++|+||||++||++++|. ++ ...+ +
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~ 210 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNL 210 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhh
Confidence 99999999886 26999999999999999998 668889999999999998883 11 1111 1
Q ss_pred ccccccCCCceEEEEeecCCceEEEEEc
Q 027409 160 QGVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 160 r~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
-..+. .+|++..+++|+|||+.+++|+
T Consensus 211 n~~l~-~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 211 NKKLA-RDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhHhc-cCcceeeEeeeccCceeeeccC
Confidence 00233 3466999999999999999874
No 8
>PLN03075 nicotianamine synthase; Provisional
Probab=99.73 E-value=3e-17 Score=148.48 Aligned_cols=119 Identities=16% Similarity=0.071 Sum_probs=103.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccC-cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh-hcCce--EEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTH-GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD-VVGWV--SEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~-~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~-a~G~~--I~l 99 (223)
-..+-.+++|+.+... +|++|+||||| .|| ++++++.+ ..+++++++||+|+++++.||+++++ . |+. |+|
T Consensus 107 ~L~~lE~~~L~~~~~~-~p~~VldIGcGpgpl--taiilaa~-~~p~~~~~giD~d~~ai~~Ar~~~~~~~-gL~~rV~F 181 (296)
T PLN03075 107 KLSKLEFDLLSQHVNG-VPTKVAFVGSGPLPL--TSIVLAKH-HLPTTSFHNFDIDPSANDVARRLVSSDP-DLSKRMFF 181 (296)
T ss_pred HHHHHHHHHHHHhhcC-CCCEEEEECCCCcHH--HHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHhhhcc-CccCCcEE
Confidence 3467789999998887 99999999999 556 78888744 45689999999999999999999964 7 887 999
Q ss_pred EecchHHHhcCCCCccEEEEeC----CCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 100 IVRQAEEVMGELKGVDFLVVDC----TSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa----~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+.|||.+..+.+++||+||++| +|+.+.++|+.+ +.++|||+++.=..
T Consensus 182 ~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 182 HTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9999999765677899999998 699999999976 56799999998874
No 9
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.64 E-value=3.2e-15 Score=128.24 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=103.9
Q ss_pred HHHHHHhhccc---CCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH
Q 027409 11 SKAYIDTVKSC---ENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK 87 (223)
Q Consensus 11 ~~ayl~~l~~~---~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~ 87 (223)
..||.+.-.+- ..+..|....++..++...+..+|||||||+|| .+..++... ..+|+|+++|+++++++.|++
T Consensus 43 ~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~--~t~~la~~~-~~~~~V~~vE~~~~~~~~a~~ 119 (212)
T PRK13942 43 EYAYVDTPLEIGYGQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGY--HAAVVAEIV-GKSGKVVTIERIPELAEKAKK 119 (212)
T ss_pred hcCcCCCCccCCCCCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccH--HHHHHHHhc-CCCCEEEEEeCCHHHHHHHHH
Confidence 34565544322 236788888888888888889999999999999 676776543 346899999999999999999
Q ss_pred HHHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 88 AMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 88 ~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
++++. |+. |+++.||+.+..+...+||.||+++...++++- ..+.|+|||.+|+.
T Consensus 120 ~l~~~-g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~--l~~~LkpgG~lvi~ 175 (212)
T PRK13942 120 TLKKL-GYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKP--LIEQLKDGGIMVIP 175 (212)
T ss_pred HHHHc-CCCCeEEEECCcccCCCcCCCcCEEEECCCcccchHH--HHHhhCCCcEEEEE
Confidence 99998 998 999999998766555689999999988777653 33467999998885
No 10
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.62 E-value=2.1e-16 Score=120.29 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=46.4
Q ss_pred EEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEEEEe
Q 027409 46 VEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFLVVD 120 (223)
Q Consensus 46 LEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfVFID 120 (223)
|||||+.|+ ||+|++.++.+.+ ++++++|.++. .+.+++++++. ++. ++++.|+..+.++++ .+|||+|||
T Consensus 1 lEiG~~~G~--st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGY--STLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-GLSDRVEFIQGDSPDFLPSLPDGPIDLIFID 76 (106)
T ss_dssp ----------------------------EEEESS-------------G-GG-BTEEEEES-THHHHHHHHH--EEEEEEE
T ss_pred Ccccccccc--ccccccccccccccCCEEEEECCCc-ccccchhhhhc-CCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC
Confidence 799999999 8889988776544 48999999997 56677778777 776 999999999999987 489999999
Q ss_pred CC--CcccHHHHHHhcc-CCCceEEEEeCC
Q 027409 121 CT--SKDFARVLRFARF-SNKGAVLAFKNA 147 (223)
Q Consensus 121 a~--K~~Y~~~f~~~~~-l~~GgvIV~DNv 147 (223)
++ .+.....|+.+.+ ++|||+||+||.
T Consensus 77 g~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 77 GDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp S---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 96 3555666666654 599999999984
No 11
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.61 E-value=1.1e-14 Score=123.85 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..|+....+..++...+..+|||||||+|| .+.+|+.. .++++++|.++++++.|++++++. |+. ++++.|
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~--~t~~la~~----~~~v~~vd~~~~~~~~a~~~~~~~-~~~~v~~~~~ 133 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGY--QAAVLAHL----VRRVFSVERIKTLQWEAKRRLKQL-GLHNVSVRHG 133 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccH--HHHHHHHH----hCEEEEEeCCHHHHHHHHHHHHHC-CCCceEEEEC
Confidence 5688888888888888888999999999999 66666653 258999999999999999999999 998 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeCCCCCCcccc-cccc-ccccccCCCceEEEEeecCCc
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGL-RWQG-QGVLDRGTRVVRSVFLPVGQG 180 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNvl~~g~~~~-~~~~-r~~v~~~~~~~~t~lLPiGDG 180 (223)
|+.+.++..++||+|++++...++++. ....|++||.+++.=- ..+.... .+.. ..-+. ....+.+.+.|+.+|
T Consensus 134 d~~~~~~~~~~fD~I~~~~~~~~~~~~--l~~~L~~gG~lv~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~ 209 (212)
T PRK00312 134 DGWKGWPAYAPFDRILVTAAAPEIPRA--LLEQLKEGGILVAPVG-GEEQQLLTRVRKRGGRFE-REVLEEVRFVPLVKG 209 (212)
T ss_pred CcccCCCcCCCcCEEEEccCchhhhHH--HHHhcCCCcEEEEEEc-CCCceEEEEEEEcCCeEE-EEEEccEEEEecCCC
Confidence 998776665789999999988777553 3466799999987532 2221110 1110 00011 123467788999998
Q ss_pred eE
Q 027409 181 LD 182 (223)
Q Consensus 181 l~ 182 (223)
++
T Consensus 210 ~~ 211 (212)
T PRK00312 210 EL 211 (212)
T ss_pred CC
Confidence 64
No 12
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.59 E-value=1.8e-14 Score=123.13 Aligned_cols=116 Identities=15% Similarity=0.085 Sum_probs=95.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..|...+.+..++......+|||||||+|| .+++||... +++|+|+++|++++.++.|++++++. |+. ++++.|
T Consensus 60 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~--~a~~la~~~-~~~g~V~~vD~~~~~~~~A~~~~~~~-g~~~v~~~~~ 135 (215)
T TIGR00080 60 ISAPHMVAMMTELLELKPGMKVLEIGTGSGY--QAAVLAEIV-GRDGLVVSIERIPELAEKAERRLRKL-GLDNVIVIVG 135 (215)
T ss_pred echHHHHHHHHHHhCCCCcCEEEEECCCccH--HHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHC-CCCCeEEEEC
Confidence 5567666666666777788999999999999 777777643 34689999999999999999999999 988 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+.+.++...+||+|++|+...++++. ..+.|++||.+++.
T Consensus 136 d~~~~~~~~~~fD~Ii~~~~~~~~~~~--~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQGWEPLAPYDRIYVTAAGPKIPEA--LIDQLKEGGILVMP 176 (215)
T ss_pred CcccCCcccCCCCEEEEcCCcccccHH--HHHhcCcCcEEEEE
Confidence 998876665689999999987777643 34567999999885
No 13
>PRK04457 spermidine synthase; Provisional
Probab=99.58 E-value=2.9e-14 Score=126.46 Aligned_cols=114 Identities=10% Similarity=0.031 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~GdA~ev 107 (223)
..++..++...+|++|||||||.|+ ++.+++.. .++++|+.+|+||+.++.|+++|... +. . ++++.|||.+.
T Consensus 55 ~~m~~~l~~~~~~~~vL~IG~G~G~--l~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 55 RAMMGFLLFNPRPQHILQIGLGGGS--LAKFIYTY--LPDTRQTAVEINPQVIAVARNHFELP-ENGERFEVIEADGAEY 129 (262)
T ss_pred HHHHHHHhcCCCCCEEEEECCCHhH--HHHHHHHh--CCCCeEEEEECCHHHHHHHHHHcCCC-CCCCceEEEECCHHHH
Confidence 3344444555689999999999997 67677643 35789999999999999999999865 54 3 99999999999
Q ss_pred hcCC-CCccEEEEeCCCcc-------cHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 108 MGEL-KGVDFLVVDCTSKD-------FARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 108 L~~L-~~fDfVFIDa~K~~-------Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+++. ++||+||+|+.... ..++|+.+ +.|+|||+++++ ++.
T Consensus 130 l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin-~~~ 179 (262)
T PRK04457 130 IAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN-LWS 179 (262)
T ss_pred HHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE-cCC
Confidence 9876 48999999986543 26888876 567999999994 543
No 14
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=4.3e-14 Score=120.48 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=91.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+-+|..-..+..++......+|||||||+|| .+..++... +.+|+|+++|+++++++.|++++++. |+. ++++.
T Consensus 55 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~--~~~~la~~~-~~~g~V~~iD~~~~~~~~a~~~l~~~-~~~~~v~~~~ 130 (205)
T PRK13944 55 ISAPHMVAMMCELIEPRPGMKILEVGTGSGY--QAAVCAEAI-ERRGKVYTVEIVKELAIYAAQNIERL-GYWGVVEVYH 130 (205)
T ss_pred echHHHHHHHHHhcCCCCCCEEEEECcCccH--HHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 4445444444344444455799999999999 776777654 34689999999999999999999998 886 99999
Q ss_pred cchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeC
Q 027409 102 RQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
||+.+.++...+||.||+++...++++ ++.+.|++||.+++..
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~~~~~--~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAASTIPS--ALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCcccCCccCCCccEEEEccCcchhhH--HHHHhcCcCcEEEEEE
Confidence 999887766568999999998776654 3456679999998865
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.54 E-value=1.3e-13 Score=116.07 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=85.8
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCcc
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fD 115 (223)
+...+.++|||||||+|+ .++.+|.. .++++|+.||.++++++.|+++.++. |+. |+++.||+.+. ...++||
T Consensus 38 ~~~~~~~~vLDiGcGtG~--~s~~la~~--~~~~~V~~iD~s~~~~~~a~~~~~~~-~~~~i~~i~~d~~~~-~~~~~fD 111 (181)
T TIGR00138 38 LEYLDGKKVIDIGSGAGF--PGIPLAIA--RPELKLTLLESNHKKVAFLREVKAEL-GLNNVEIVNGRAEDF-QHEEQFD 111 (181)
T ss_pred HHhcCCCeEEEecCCCCc--cHHHHHHH--CCCCeEEEEeCcHHHHHHHHHHHHHh-CCCCeEEEecchhhc-cccCCcc
Confidence 455678999999999998 77777643 34689999999999999999999998 987 99999999885 3235899
Q ss_pred EEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 116 FLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+|+.++ ..++..+++.+ +.++|||.+++-
T Consensus 112 ~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 112 VITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred EEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 999998 67888888865 567999999864
No 16
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.7e-14 Score=121.56 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=104.8
Q ss_pred HHHHHHhhcc---cCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH
Q 027409 11 SKAYIDTVKS---CENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK 87 (223)
Q Consensus 11 ~~ayl~~l~~---~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~ 87 (223)
..||.++-.+ ++.|-.|.....+..++......+|||||||.|| .|--||+- -|+|+|||++++..+.||+
T Consensus 39 ~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY--~aAvla~l----~~~V~siEr~~~L~~~A~~ 112 (209)
T COG2518 39 HLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGY--QAAVLARL----VGRVVSIERIEELAEQARR 112 (209)
T ss_pred cccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchH--HHHHHHHH----hCeEEEEEEcHHHHHHHHH
Confidence 4466666544 2347889888888899999999999999999999 55455543 3599999999999999999
Q ss_pred HHHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeCC
Q 027409 88 AMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNA 147 (223)
Q Consensus 88 ~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNv 147 (223)
|++.. |+. |.++.||...-.+...+||-|++-|+-..-++-| +.-|++||.+|+---
T Consensus 113 ~L~~l-g~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~L--l~QL~~gGrlv~PvG 170 (209)
T COG2518 113 NLETL-GYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEAL--LDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHc-CCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHH--HHhcccCCEEEEEEc
Confidence 99999 997 9999999999999888999999999988776544 334578898887543
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.53 E-value=2e-13 Score=115.98 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=96.0
Q ss_pred HHHHHhhcccCCC---C-----cHHH-HHHHHHH---HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc
Q 027409 12 KAYIDTVKSCENI---K-----ESGV-AELLSAM---AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE 79 (223)
Q Consensus 12 ~ayl~~l~~~~~i---i-----~p~~-g~fL~~L---~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~ 79 (223)
+.|+.-|++-+.. . ++-. ..|+..+ .....+++|||||||+|+ .++++|.+ .++++|++||.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~--~al~la~~--~~~~~V~giD~s~ 79 (187)
T PRK00107 4 EAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGF--PGIPLAIA--RPELKVTLVDSLG 79 (187)
T ss_pred HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCH--HHHHHHHH--CCCCeEEEEeCcH
Confidence 4688888887751 1 1111 1222222 222336899999999998 77777653 3478999999999
Q ss_pred hHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 80 RSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 80 e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
++++.|+++.++. |+. ++++.+|+.+.-. .++||+||.++ ..++..+++.+ +.++|||.+++-
T Consensus 80 ~~l~~A~~~~~~~-~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 80 KKIAFLREVAAEL-GLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred HHHHHHHHHHHHc-CCCCEEEEeccHhhCCC-CCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEE
Confidence 9999999999999 988 9999999988433 34899999987 46788899865 677999998865
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.52 E-value=7e-14 Score=105.89 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=78.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDFLV 118 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDfVF 118 (223)
-.+|||||||+|. .+++++. ..++++++.+|.+|++++.|++++.+. +.. |+++.+|+ +..... ++||+|+
T Consensus 2 ~~~vLDlGcG~G~--~~~~l~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~-~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 2 GGRVLDLGCGTGR--LSIALAR--LFPGARVVGVDISPEMLEIARERAAEE-GLSDRITFVQGDA-EFDPDFLEPFDLVI 75 (112)
T ss_dssp TCEEEEETTTTSH--HHHHHHH--HHTTSEEEEEESSHHHHHHHHHHHHHT-TTTTTEEEEESCC-HGGTTTSSCEEEEE
T ss_pred CCEEEEEcCcCCH--HHHHHHh--cCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEECcc-ccCcccCCCCCEEE
Confidence 4789999999998 7878875 235789999999999999999999766 565 99999999 544544 6899999
Q ss_pred EeC-CCcccHH------HHHHh-ccCCCceEEEEe
Q 027409 119 VDC-TSKDFAR------VLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 119 IDa-~K~~Y~~------~f~~~-~~l~~GgvIV~D 145 (223)
++. .-..|.. +++.+ +.++|||.++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 999 4444544 47755 567999999875
No 19
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.52 E-value=2.9e-13 Score=113.93 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=98.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEe
Q 027409 23 NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIV 101 (223)
Q Consensus 23 ~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~ 101 (223)
++..+++.+++...+......+|||+|||+|+ .++++|.. .++++|+++|+++++++.|++|+++. |+. |+++.
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~--~~~~la~~--~~~~~V~~vD~s~~~~~~a~~n~~~~-~~~~v~~~~ 96 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGT--IPVEAGLL--CPKGRVIAIERDEEVVNLIRRNCDRF-GVKNVEVIE 96 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCH--HHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCeEEEE
Confidence 46777788877777776677899999999998 77777643 34689999999999999999999998 887 99999
Q ss_pred cchHHHhcCC-CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 102 RQAEEVMGEL-KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 102 GdA~evL~~L-~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
||+.+.++.+ ..+|.+|+|+. ....++++.+ +.|+|||.+++...
T Consensus 97 ~d~~~~~~~~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 97 GSAPECLAQLAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CchHHHHhhCCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 9999887776 36899999975 3557888765 57799999888864
No 20
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.52 E-value=2.7e-13 Score=113.14 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=96.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..+++.+++-.++...+..+|||||||+|+ .++.++.. .++++++++|+++++++.|++|+++. ++. |+++.|
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~--~~~~la~~--~~~~~v~~vD~s~~~~~~a~~n~~~~-~~~~i~~~~~ 88 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGS--VSIEAALQ--FPSLQVTAIERNPDALRLIKENRQRF-GCGNIDIIPG 88 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHh-CCCCeEEEec
Confidence 4455566666556666788999999999998 77777654 34689999999999999999999998 887 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQR 150 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~ 150 (223)
|+...++ +.||+||+++....+.++++.+ +.|+|||.++...+...
T Consensus 89 d~~~~~~--~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~ 135 (187)
T PRK08287 89 EAPIELP--GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLE 135 (187)
T ss_pred CchhhcC--cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHh
Confidence 9865443 4799999999888888888754 67799999999765443
No 21
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.49 E-value=5.9e-13 Score=101.69 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=86.7
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CC
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~ 113 (223)
.+...+.++|||+|||.|+ .++.++.. .++++++++|.++.+.+.|+++++.. ++. ++++.+|+.+.++.. +.
T Consensus 14 ~~~~~~~~~vldlG~G~G~--~~~~l~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGS--ITIEAARL--VPNGRVYAIERNPEALRLIERNARRF-GVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HcCCCCCCEEEEeCCCCCH--HHHHHHHH--CCCceEEEEcCCHHHHHHHHHHHHHh-CCCceEEEeccccccChhhcCC
Confidence 3344455799999999998 77677643 23589999999999999999999998 887 999999988755544 58
Q ss_pred ccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 114 VDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
||.|+++.....+.++++.+ +.++|||.++++
T Consensus 89 ~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 99999999888999999855 678999999875
No 22
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.48 E-value=9e-13 Score=111.38 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=96.1
Q ss_pred CCcHHHHHHHH-HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEE
Q 027409 24 IKESGVAELLS-AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~-~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li 100 (223)
.++++-.+.+. ..+......+|||+|||+|+ .++.+|... .++++|+++|+++++++.|++|+++. |+ . ++++
T Consensus 22 ~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~--~s~~~a~~~-~~~~~v~avD~~~~~~~~a~~n~~~~-g~~~~v~~~ 97 (198)
T PRK00377 22 PMTKEEIRALALSKLRLRKGDMILDIGCGTGS--VTVEASLLV-GETGKVYAVDKDEKAINLTRRNAEKF-GVLNNIVLI 97 (198)
T ss_pred CCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCH--HHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHh-CCCCCeEEE
Confidence 45544333333 23334466799999999998 676666543 34689999999999999999999998 95 3 9999
Q ss_pred ecchHHHhcCC-CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 101 VRQAEEVMGEL-KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 101 ~GdA~evL~~L-~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
.||+.+.++.+ +.||.||+......+.++++.+ +.++|||.++.+..-.
T Consensus 98 ~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 98 KGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred EechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 99999988877 5899999988888899999865 6779999999887644
No 23
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.47 E-value=2.8e-13 Score=117.07 Aligned_cols=131 Identities=17% Similarity=0.094 Sum_probs=93.3
Q ss_pred HHHHHhhcc---cCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH
Q 027409 12 KAYIDTVKS---CENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA 88 (223)
Q Consensus 12 ~ayl~~l~~---~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~ 88 (223)
.||.+.-.+ +..+-.|..-..+..++.+..-.+|||||||+|| .|-.||.-. .+.|+|+|||++++.++.|+++
T Consensus 40 ~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY--~aAlla~lv-g~~g~Vv~vE~~~~l~~~A~~~ 116 (209)
T PF01135_consen 40 LAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGY--QAALLAHLV-GPVGRVVSVERDPELAERARRN 116 (209)
T ss_dssp GTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSH--HHHHHHHHH-STTEEEEEEESBHHHHHHHHHH
T ss_pred CCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcH--HHHHHHHhc-CccceEEEECccHHHHHHHHHH
Confidence 455555443 2236678776666666778888999999999999 443444332 4468999999999999999999
Q ss_pred HHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeCCC
Q 027409 89 MYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 89 ~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNvl 148 (223)
+++. |+. |+++.||+.+-++...+||.|++.+.-..-+.- .+..|++||.+|+---.
T Consensus 117 l~~~-~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~--l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 117 LARL-GIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEA--LLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp HHHH-TTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HH--HHHTEEEEEEEEEEESS
T ss_pred HHHh-ccCceeEEEcchhhccccCCCcCEEEEeeccchHHHH--HHHhcCCCcEEEEEEcc
Confidence 9999 998 999999999877776799999999987665533 23446899999986543
No 24
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.45 E-value=1.6e-12 Score=110.69 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE 105 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ 105 (223)
+|+-.+.-..++..+-.++++||||+|- -++-+|. ..+.|+++.||.|++.++..++|.+++ |++ ++++.|+|-
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGs--i~iE~a~--~~p~~~v~AIe~~~~a~~~~~~N~~~f-g~~n~~vv~g~Ap 94 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGS--ITIEWAL--AGPSGRVIAIERDEEALELIERNAARF-GVDNLEVVEGDAP 94 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccH--HHHHHHH--hCCCceEEEEecCHHHHHHHHHHHHHh-CCCcEEEEeccch
Confidence 4444444555667778899999999996 6776653 356899999999999999999999999 998 999999999
Q ss_pred HHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 106 EVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
+.|+++..||-|||=.. .++...++.+ ..|++||-||++=+....
T Consensus 95 ~~L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 95 EALPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred HhhcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 99999988999999999 9999999976 567999999998775433
No 25
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.42 E-value=5.9e-13 Score=113.34 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=99.2
Q ss_pred HHHHHhhcccCC-----CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHH
Q 027409 12 KAYIDTVKSCEN-----IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYV 86 (223)
Q Consensus 12 ~ayl~~l~~~~~-----ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar 86 (223)
..||+..+.... +++|.++.+++++.. ...+|||||||+|+ .++.+|.. .++++++++|+++++++.|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~--~~~~la~~--~p~~~v~gVD~s~~~i~~a~ 81 (202)
T PRK00121 8 RGRLTKGQQRAIEELWPRLSPAPLDWAELFGN--DAPIHLEIGFGKGE--FLVEMAKA--NPDINFIGIEVHEPGVGKAL 81 (202)
T ss_pred ccccccchhhhhcccchhhcCCCCCHHHHcCC--CCCeEEEEccCCCH--HHHHHHHH--CCCccEEEEEechHHHHHHH
Confidence 456666555332 788999999999998 78899999999998 67677643 34679999999999999999
Q ss_pred HHHHhhcCce-EEEEecchHHHhcC-C--CCccEEEEeC---CC--------cccHHHHHHh-ccCCCceEEEE
Q 027409 87 KAMYDVVGWV-SEVIVRQAEEVMGE-L--KGVDFLVVDC---TS--------KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 87 ~~~~~a~G~~-I~li~GdA~evL~~-L--~~fDfVFIDa---~K--------~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
++++.. ++. ++++.+|+.+.++. + ..||.|++.. +. ..+..+++.+ +.++|||.++.
T Consensus 82 ~~~~~~-~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 82 KKIEEE-GLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHHHc-CCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 999998 887 99999999666663 4 3799999843 11 1267888765 67899998865
No 26
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.1e-12 Score=113.46 Aligned_cols=132 Identities=18% Similarity=0.088 Sum_probs=108.1
Q ss_pred HHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 13 AYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 13 ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
.|+..+.-...||-|--..++.+.+.+..-.+|||.|||.|. .|..||.+.. +.|+|+|.|+.+++++.|++|++++
T Consensus 66 d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~--lt~~La~~vg-~~G~v~tyE~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 66 DYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGA--LTAYLARAVG-PEGHVTTYEIREDFAKTARENLSEF 142 (256)
T ss_pred HHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchH--HHHHHHHhhC-CCceEEEEEecHHHHHHHHHHHHHh
Confidence 455554444457877778889999999999999999999997 7778887654 4699999999999999999999999
Q ss_pred cCce--EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 93 VGWV--SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 93 ~G~~--I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
|+. |++..||..+.+... .||-||+|-- +=-++++.+ ..|+|||.+++-+-....
T Consensus 143 -~l~d~v~~~~~Dv~~~~~~~-~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 143 -GLGDRVTLKLGDVREGIDEE-DVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred -ccccceEEEecccccccccc-ccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 888 999999999977765 8999999973 334567755 567999999998765433
No 27
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=9e-12 Score=114.07 Aligned_cols=116 Identities=8% Similarity=0.003 Sum_probs=89.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+.+|..-..+...+...+..+|||||||+|| .++.+|... +..|+|+++|+++++++.|++++++. |+. ++++.|
T Consensus 63 ~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~--~a~~LA~~~-~~~g~VvgVDis~~~l~~Ar~~l~~~-g~~nV~~i~g 138 (322)
T PRK13943 63 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGY--NAAVMSRVV-GEKGLVVSVEYSRKICEIAKRNVRRL-GIENVIFVCG 138 (322)
T ss_pred CCcHHHHHHHHHhcCCCCCCEEEEEeCCccH--HHHHHHHhc-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCcEEEEeC
Confidence 4456554444444455566899999999999 777777543 33578999999999999999999998 988 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+.+.++...+||.|++++...+-++. ..+.+++||.+++.
T Consensus 139 D~~~~~~~~~~fD~Ii~~~g~~~ip~~--~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 139 DGYYGVPEFAPYDVIFVTVGVDEVPET--WFTQLKEGGRVIVP 179 (322)
T ss_pred ChhhcccccCCccEEEECCchHHhHHH--HHHhcCCCCEEEEE
Confidence 999887776789999999876654432 34567888877663
No 28
>PRK01581 speE spermidine synthase; Validated
Probab=99.35 E-value=6.8e-12 Score=116.76 Aligned_cols=107 Identities=11% Similarity=0.005 Sum_probs=80.6
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHH-----Hhh-cCce-EEEEecchHHHh
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAM-----YDV-VGWV-SEVIVRQAEEVM 108 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~-----~~a-~G~~-I~li~GdA~evL 108 (223)
++...+|++||+||+|.|+ +...++. .++..+|+.+|+|+++++.|++++ .+. +... ++++.|||.+.|
T Consensus 145 m~~h~~PkrVLIIGgGdG~--tlrelLk--~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 145 MSKVIDPKRVLILGGGDGL--ALREVLK--YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL 220 (374)
T ss_pred HHhCCCCCEEEEECCCHHH--HHHHHHh--cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH
Confidence 4456899999999999987 4333332 234579999999999999999842 222 1223 999999999999
Q ss_pred cCC-CCccEEEEeCCCc-------cc-HHHHHHh-ccCCCceEEEEeC
Q 027409 109 GEL-KGVDFLVVDCTSK-------DF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~K~-------~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.. +.||+||+|.... .| .++|+.+ +.|+|||++|+-.
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 876 4799999996432 45 6677776 5679999998864
No 29
>PLN02366 spermidine synthase
Probab=99.35 E-value=1.5e-11 Score=111.92 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=86.3
Q ss_pred HHHHHHHHHHH-----hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce---EE
Q 027409 28 GVAELLSAMAA-----GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV---SE 98 (223)
Q Consensus 28 ~~g~fL~~L~~-----~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~---I~ 98 (223)
+...+-.+|+. ..+|++||+||+|.|. ++.++++ .++..+|+.+|+|++.++.||++|... .+++ ++
T Consensus 73 de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~--~~rellk--~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~ 148 (308)
T PLN02366 73 DECAYQEMITHLPLCSIPNPKKVLVVGGGDGG--VLREIAR--HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVN 148 (308)
T ss_pred cHHHHHHHHHHHHHhhCCCCCeEEEEcCCccH--HHHHHHh--CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceE
Confidence 33344445443 3689999999999997 5555543 244478999999999999999999764 1232 99
Q ss_pred EEecchHHHhcCC-C-CccEEEEeCCCcc-------cHHHHHHh-ccCCCceEEEEe
Q 027409 99 VIVRQAEEVMGEL-K-GVDFLVVDCTSKD-------FARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 99 li~GdA~evL~~L-~-~fDfVFIDa~K~~-------Y~~~f~~~-~~l~~GgvIV~D 145 (223)
++.|||.+.+.+. + .||+||+|+.... +.++|+.+ +.|+|||+++..
T Consensus 149 vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 149 LHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9999999999876 3 7999999986532 45778876 567999999763
No 30
>PRK00811 spermidine synthase; Provisional
Probab=99.35 E-value=9e-12 Score=111.63 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=79.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc---e-EEEEecchHHHhcCC-CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW---V-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~---~-I~li~GdA~evL~~L-~~ 113 (223)
.+|++||+||||.|+ .+.+++. .+...+|+.+|+|++.++.|+++|... .|. . ++++.|||.+.++.. +.
T Consensus 75 ~~p~~VL~iG~G~G~--~~~~~l~--~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 75 PNPKRVLIIGGGDGG--TLREVLK--HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCCEEEEEecCchH--HHHHHHc--CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 489999999999997 5555542 334568999999999999999999864 122 2 999999999998865 47
Q ss_pred ccEEEEeCCC------ccc-HHHHHHh-ccCCCceEEEEe
Q 027409 114 VDFLVVDCTS------KDF-ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K------~~Y-~~~f~~~-~~l~~GgvIV~D 145 (223)
||+|++|+.. ..| .++|+.+ +.|++||++++.
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999999732 223 5566766 567999999974
No 31
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.29 E-value=5e-11 Score=105.67 Aligned_cols=127 Identities=16% Similarity=0.033 Sum_probs=90.6
Q ss_pred HHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc
Q 027409 14 YIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV 93 (223)
Q Consensus 14 yl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~ 93 (223)
|...|.-.-.||=|--..++-+.+.+..=.+|||.|||.|. .|++||.+.. +.|+|+|.|.++++++.|++||++.
T Consensus 13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~--lt~~l~r~v~-p~G~v~t~E~~~~~~~~A~~n~~~~- 88 (247)
T PF08704_consen 13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGS--LTHALARAVG-PTGHVYTYEFREDRAEKARKNFERH- 88 (247)
T ss_dssp HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSH--HHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHT-
T ss_pred HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHH--HHHHHHHHhC-CCeEEEccccCHHHHHHHHHHHHHc-
Confidence 44554444457777777888888899999999999999997 8889988765 4799999999999999999999999
Q ss_pred Cce--EEEEecchHH-Hhc-CC-CCccEEEEeC-CCcccHHHHHHhccC-CCceEEEEeC
Q 027409 94 GWV--SEVIVRQAEE-VMG-EL-KGVDFLVVDC-TSKDFARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 94 G~~--I~li~GdA~e-vL~-~L-~~fDfVFIDa-~K~~Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
|+. |++..+|..+ -.+ ++ ..+|-||+|- ++-++.+... +.| ++||.|++=.
T Consensus 89 gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~--~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAK--RALKKPGGRICCFS 146 (247)
T ss_dssp TCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHH--HHE-EEEEEEEEEE
T ss_pred CCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHH--HHHhcCCceEEEEC
Confidence 997 9999999964 443 34 4799999997 3444544443 345 7999998854
No 32
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.29 E-value=2.3e-11 Score=98.08 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=81.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDf 116 (223)
.+-.+||++|||+|+ .++.|+. ...++++++.+|.++++++.|++.+++. ++. ++|+.+|+.+ ++.. +.||+
T Consensus 2 ~~~~~iLDlGcG~G~--~~~~l~~-~~~~~~~i~gvD~s~~~i~~a~~~~~~~-~~~ni~~~~~d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGR--LLIQLAK-ELNPGAKIIGVDISEEMIEYAKKRAKEL-GLDNIEFIQGDIED-LPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSH--HHHHHHH-HSTTTSEEEEEESSHHHHHHHHHHHHHT-TSTTEEEEESBTTC-GCGCSSTTEEE
T ss_pred CCCCEEEEecCcCcH--HHHHHHH-hcCCCCEEEEEECcHHHHHHhhcccccc-cccccceEEeehhc-cccccCCCeeE
Confidence 456899999999998 7767763 2345789999999999999999999999 998 9999999999 7753 68999
Q ss_pred EEEeCCCccc---HHHHHHh-ccCCCceEEEEeCCC
Q 027409 117 LVVDCTSKDF---ARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 117 VFIDa~K~~Y---~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
|+.+..-... ..+++.+ +.+++||++++-..-
T Consensus 77 I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999754222 3456544 567888888766543
No 33
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.28 E-value=2.1e-11 Score=114.38 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=85.7
Q ss_pred HHHHHHHHHH------HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EE
Q 027409 28 GVAELLSAMA------AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SE 98 (223)
Q Consensus 28 ~~g~fL~~L~------~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~ 98 (223)
.+|-||.+-. +..+.++|||+||++|+ .+++.+. ....+|+++|+++..++.|++|++.. |+. ++
T Consensus 201 ktG~flDqr~~R~~~~~~~~g~rVLDlfsgtG~--~~l~aa~---~ga~~V~~VD~s~~al~~a~~N~~~N-gl~~~~v~ 274 (396)
T PRK15128 201 KTGYYLDQRDSRLATRRYVENKRVLNCFSYTGG--FAVSALM---GGCSQVVSVDTSQEALDIARQNVELN-KLDLSKAE 274 (396)
T ss_pred ccCcChhhHHHHHHHHHhcCCCeEEEeccCCCH--HHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCCcEE
Confidence 3455655433 55678999999999997 6655432 22358999999999999999999998 873 99
Q ss_pred EEecchHHHhcCC----CCccEEEEeCC-----C-------cccHHHHHHh-ccCCCceEEEE
Q 027409 99 VIVRQAEEVMGEL----KGVDFLVVDCT-----S-------KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 99 li~GdA~evL~~L----~~fDfVFIDa~-----K-------~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
++.||+.+.|+++ ..||+||+|.- | ..|.+++... +.+++||++++
T Consensus 275 ~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 275 FVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred EEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9999999998764 37999999943 2 3577777754 66799998875
No 34
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=6.8e-11 Score=103.44 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=91.9
Q ss_pred HHHHHHHHhhcccCC------CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHH
Q 027409 9 AASKAYIDTVKSCEN------IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSR 82 (223)
Q Consensus 9 ~a~~ayl~~l~~~~~------ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~ 82 (223)
..++.|-++.-.... ++..+..++|..+. .++.+|||||||+|+ .+++|+.. +.+++.+|++++++
T Consensus 8 ~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~--~~~~~vLDiGcG~G~--~a~~la~~----g~~v~~vD~s~~~l 79 (255)
T PRK11036 8 DIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP--PRPLRVLDAGGGEGQ--TAIKLAEL----GHQVILCDLSAEMI 79 (255)
T ss_pred hHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC--CCCCEEEEeCCCchH--HHHHHHHc----CCEEEEEECCHHHH
Confidence 345555555433321 23344455665553 567899999999998 77777642 57999999999999
Q ss_pred HHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccEEEEeCCC---cccHHHHHHh-ccCCCceEEEE
Q 027409 83 LAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 83 ~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.|+++.++. |+. ++++.||+.+..+.. +.||+|++..-- .+-..+++.+ +.++|||.++.
T Consensus 80 ~~a~~~~~~~-g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 80 QRAKQAAEAK-GVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HHHHHHHHhc-CCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 9999999998 875 999999998864433 489999987532 2334667644 67899999865
No 35
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=3.5e-11 Score=113.65 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=94.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.+...++..++...+.++|||+|||.|. .|+++|... .++|+|+++|+++++++.+++|+++. |+. |+++.|
T Consensus 233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~--~t~~la~~~-~~~~~v~avDi~~~~l~~~~~n~~~~-g~~~v~~~~~ 308 (444)
T PRK14902 233 TIQDESSMLVAPALDPKGGDTVLDACAAPGG--KTTHIAELL-KNTGKVVALDIHEHKLKLIEENAKRL-GLTNIETKAL 308 (444)
T ss_pred EEEChHHHHHHHHhCCCCCCEEEEeCCCCCH--HHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 4566677788877777777899999999998 777777543 34689999999999999999999999 998 999999
Q ss_pred chHHHhcCC-CCccEEEEeCCCcc-------------------------cHHHHHH-hccCCCceEEEEeC
Q 027409 103 QAEEVMGEL-KGVDFLVVDCTSKD-------------------------FARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~~L-~~fDfVFIDa~K~~-------------------------Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
|+.+.++.+ +.||+||+|+.-.. ..++++. .+.++|||.+|...
T Consensus 309 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 309 DARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 998865555 47999999975221 1234553 36779999999765
No 36
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.26 E-value=5e-11 Score=98.82 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
..+|...+...++++|||+|||+|+ .++.++.. +.+++++|.++++++.|+++++.. +..++++.+|+.+.+.
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~ 80 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGTGL--VAIRLKGK----GKCILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGVR 80 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCChhH--HHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEcccccccC
Confidence 4677677778888999999999998 66666532 238999999999999999999988 8789999999877543
Q ss_pred CCCCccEEEEeCC------------------------CcccHHHHHHh-ccCCCceEEEE-eCCC
Q 027409 110 ELKGVDFLVVDCT------------------------SKDFARVLRFA-RFSNKGAVLAF-KNAF 148 (223)
Q Consensus 110 ~L~~fDfVFIDa~------------------------K~~Y~~~f~~~-~~l~~GgvIV~-DNvl 148 (223)
+.||+|+.+.- ...+.++++.+ +.|+|||.++. ++..
T Consensus 81 --~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 81 --GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred --CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 48999998731 01145667655 66788886544 4433
No 37
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.26 E-value=8.6e-11 Score=100.36 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=80.3
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCcc
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fD 115 (223)
+.....++|||||||+|. .+..++... +++++++.+|+++++++.|++++++. ++. ++++.||+.+.-..-+.||
T Consensus 41 l~~~~~~~vLDiGcG~G~--~~~~la~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 41 MNVQAGTSALDVCCGTAD--WSIALAEAV-GPEGHVIGLDFSENMLSVGRQKVKDA-GLHNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred cCCCCCCEEEEeCCCcCH--HHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHhc-CCCceEEEEechhcCCCCCCCcc
Confidence 344456799999999997 666676543 34689999999999999999999988 887 9999999977421224799
Q ss_pred EEEEeCC---CcccHHHHHHh-ccCCCceEEEE
Q 027409 116 FLVVDCT---SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~---K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+|++... -.++.++++.+ +.|+|||.+++
T Consensus 117 ~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 117 YVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 9998753 34566667644 67799998875
No 38
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.24 E-value=1.5e-10 Score=99.41 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHh
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVM 108 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL 108 (223)
..++.++......++|||+|||+|+ .++.++ + +. .++|+.+|.|++.++.|++|++.. |.. ++++.||+.+.+
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~--l~l~~l-s-r~-a~~V~~vE~~~~a~~~a~~Nl~~~-~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGA--LGLEAL-S-RY-AAGATLLEMDRAVAQQLIKNLATL-KAGNARVVNTNALSFL 115 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccH--HHHHHH-H-cC-CCEEEEEECCHHHHHHHHHHHHHh-CCCcEEEEEchHHHHH
Confidence 3456777665667899999999997 666432 1 21 368999999999999999999999 987 999999999988
Q ss_pred cCC-CCccEEEEeCC--CcccHHHHHHhc---cCCCceEEEEeC
Q 027409 109 GEL-KGVDFLVVDCT--SKDFARVLRFAR---FSNKGAVLAFKN 146 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~--K~~Y~~~f~~~~---~l~~GgvIV~DN 146 (223)
+.. .+||+||+|-- ++.+.+.++.+. .+.++++|++..
T Consensus 116 ~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred hhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 654 36999999986 555666667663 257888888764
No 39
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.23 E-value=3.5e-11 Score=119.92 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=88.1
Q ss_pred HHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhcC
Q 027409 34 SAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGE 110 (223)
Q Consensus 34 ~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~ 110 (223)
.++....+.++|||+||++|. .++++|.+ ...+|+++|.+++.++.|++|++.. |++ ++++.||+.+.|++
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~--~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~ 604 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGT--ASVHAALG---GAKSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKE 604 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCH--HHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHH
Confidence 446666778999999999998 88887643 1236999999999999999999998 874 99999999999876
Q ss_pred C-CCccEEEEeCCC--------------cccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 111 L-KGVDFLVVDCTS--------------KDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 111 L-~~fDfVFIDa~K--------------~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
+ .+||+||+|.-. ..|.+++..+ ++++|||++++.+-.
T Consensus 605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 6 479999999631 2477777754 677999999887653
No 40
>PLN02823 spermine synthase
Probab=99.22 E-value=1.1e-10 Score=107.63 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=78.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc--e-EEEEecchHHHhcCC-CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW--V-SEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~--~-I~li~GdA~evL~~L-~~f 114 (223)
.+|++||.||+|.|+ ++.+++. .++..+|+.+|+|++.++.||++|... -++ . ++++.|||.+.|.+. +.|
T Consensus 102 ~~pk~VLiiGgG~G~--~~re~l~--~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 102 PNPKTVFIMGGGEGS--TAREVLR--HKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCCEEEEECCCchH--HHHHHHh--CCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 479999999999987 5544442 233468999999999999999998643 022 2 999999999999876 489
Q ss_pred cEEEEeCCCc--------cc-HHHHH-Hh-ccCCCceEEEEe
Q 027409 115 DFLVVDCTSK--------DF-ARVLR-FA-RFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~--------~Y-~~~f~-~~-~~l~~GgvIV~D 145 (223)
|+||+|+... .| .+||+ .+ +.|+|||++|+.
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999997431 23 56777 66 467999999874
No 41
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.20 E-value=1.7e-10 Score=103.48 Aligned_cols=118 Identities=20% Similarity=0.110 Sum_probs=89.8
Q ss_pred CCcHHHHHHHHHHHH-h---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--E
Q 027409 24 IKESGVAELLSAMAA-G---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~-~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I 97 (223)
+..|++..++...+. . .++++|||+|||+|. .++++|.. .++++++.+|++++.++.|++|.++. |+. |
T Consensus 100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~--i~~~la~~--~~~~~v~avDis~~al~~A~~n~~~~-~~~~~i 174 (284)
T TIGR03533 100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGC--IAIACAYA--FPEAEVDAVDISPDALAVAEINIERH-GLEDRV 174 (284)
T ss_pred cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcE
Confidence 567788888877654 2 346899999999998 67677643 34689999999999999999999998 885 9
Q ss_pred EEEecchHHHhcCCCCccEEEEeCC----------------------------CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 98 EVIVRQAEEVMGELKGVDFLVVDCT----------------------------SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 98 ~li~GdA~evL~~L~~fDfVFIDa~----------------------------K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+++.||+.+.++. ..||+|+.|-- -+.|..++..+ +.|++||.++++--
T Consensus 175 ~~~~~D~~~~~~~-~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 175 TLIQSDLFAALPG-RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EEEECchhhccCC-CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999999876642 36999998720 01245555543 56799999997643
No 42
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=1.9e-10 Score=108.82 Aligned_cols=119 Identities=11% Similarity=0.123 Sum_probs=93.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.+..+++..++......+|||+|||.|. .|+.+|.. ..++|+|+++|+++++++.+++|+++. |+. |+++.+
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGg--kt~~la~~-~~~~g~V~a~Dis~~rl~~~~~n~~r~-g~~~v~~~~~ 295 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGG--KTTAIAEL-MKDQGKILAVDISREKIQLVEKHAKRL-KLSSIEIKIA 295 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHHc-CCCeEEEEEC
Confidence 4556667788777777788899999999997 77777754 445789999999999999999999999 998 999999
Q ss_pred chHHHhcCC-CCccEEEEeCCCc-------------------------ccHHHHH-HhccCCCceEEEEeC
Q 027409 103 QAEEVMGEL-KGVDFLVVDCTSK-------------------------DFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~~L-~~fDfVFIDa~K~-------------------------~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
|+.+.-..+ +.||.||+|+--. .+.+.++ ..+.++|||.+|..-
T Consensus 296 Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 296 DAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred chhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998753233 4799999997431 1233454 336779999988765
No 43
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.19 E-value=2.7e-10 Score=99.54 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=78.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
....+|||||||+|. .+++++.....++++++.+|.++++++.|++++++. |.. |+++.||+.+.. +..+|+|
T Consensus 55 ~~~~~vLDlGcGtG~--~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-~~~~~v~~~~~d~~~~~--~~~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGA--ATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KAPTPVDVIEGDIRDIA--IENASMV 129 (247)
T ss_pred CCCCEEEEEcccCCH--HHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEeCChhhCC--CCCCCEE
Confidence 356799999999998 666776544456799999999999999999999998 775 999999998742 2468887
Q ss_pred EEeC-----CCcccHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 118 VVDC-----TSKDFARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 118 FIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
+.-. ..++-..+++.+ +.|+|||.++. |.+..
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 7532 122335677655 67788888665 44433
No 44
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.19 E-value=2.2e-10 Score=96.72 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=80.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--C-Ccc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--K-GVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~-~fD 115 (223)
....+|||||||.|. .++++|.. .+++.++.+|+++++++.|+++.++. |+. |+++.||+.+.++.+ + .+|
T Consensus 15 ~~~~~ilDiGcG~G~--~~~~la~~--~p~~~v~gvD~~~~~l~~a~~~~~~~-~l~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 15 NKAPLHLEIGCGKGR--FLIDMAKQ--NPDKNFLGIEIHTPIVLAANNKANKL-GLKNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCCceEEEeCCCccH--HHHHHHHh--CCCCCEEEEEeeHHHHHHHHHHHHHh-CCCCEEEEccCHHHHHHhhCCCCcee
Confidence 567799999999998 67677643 45789999999999999999999998 998 999999999977653 2 699
Q ss_pred EEEEeC---C-C-------cccHHHHHHh-ccCCCceEEEE
Q 027409 116 FLVVDC---T-S-------KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa---~-K-------~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.||++. + | -.+.+++..+ +.|+|||.+++
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 999974 1 1 1236788755 67899998753
No 45
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.18 E-value=3.3e-10 Score=100.38 Aligned_cols=117 Identities=8% Similarity=0.050 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA 104 (223)
+.....+...++......+||++|||.|. -|+.+|.. ..+.|+|+++|+++++++.+++|+++. |+. |+++.+|+
T Consensus 56 qd~~s~~~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~-~~~~g~v~a~D~~~~~l~~~~~n~~~~-g~~~v~~~~~D~ 131 (264)
T TIGR00446 56 QEASSMIPPLALEPDPPERVLDMAAAPGG--KTTQISAL-MKNEGAIVANEFSKSRTKVLIANINRC-GVLNVAVTNFDG 131 (264)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEECCCchH--HHHHHHHH-cCCCCEEEEEcCCHHHHHHHHHHHHHc-CCCcEEEecCCH
Confidence 33344444444444555789999999997 77777654 444689999999999999999999999 988 99999999
Q ss_pred HHHhcCCCCccEEEEeCCCcc-------------------------cHHHHH-HhccCCCceEEEEeC
Q 027409 105 EEVMGELKGVDFLVVDCTSKD-------------------------FARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa~K~~-------------------------Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
.........||.||+|+--.. ..+.++ +++.++|||.||.--
T Consensus 132 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 132 RVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred HHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 875333357999999973221 133554 336679999988553
No 46
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.18 E-value=3e-10 Score=100.83 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=79.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC----ce-EEEEecchHHHhcCC-CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG----WV-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G----~~-I~li~GdA~evL~~L-~~ 113 (223)
.+|++||+||+|.|. .+.+++. ..+..+++.+|+|++.++.|+++|... + .. ++++.+|+.+.+.+. ++
T Consensus 71 ~~p~~VL~iG~G~G~--~~~~ll~--~~~~~~v~~veid~~vi~~a~~~~~~~-~~~~~~~~v~i~~~D~~~~l~~~~~~ 145 (270)
T TIGR00417 71 PNPKHVLVIGGGDGG--VLREVLK--HKSVEKATLVDIDEKVIELSKKFLPSL-AGSYDDPRVDLQIDDGFKFLADTENT 145 (270)
T ss_pred CCCCEEEEEcCCchH--HHHHHHh--CCCcceEEEEeCCHHHHHHHHHHhHhh-cccccCCceEEEECchHHHHHhCCCC
Confidence 478999999999996 4444432 233468999999999999999999764 2 12 899999999999876 48
Q ss_pred ccEEEEeCCCc------c-cHHHHHHh-ccCCCceEEEEe
Q 027409 114 VDFLVVDCTSK------D-FARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~------~-Y~~~f~~~-~~l~~GgvIV~D 145 (223)
||+|++|+... . ..++|+.+ +.|+|||++++.
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99999998522 1 35677766 567999999986
No 47
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=2.4e-10 Score=108.18 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=88.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.++..+...++....-++|||+|||.|+ .|++++... ..+|+|+++|+++++++.+++++++. |+. |+++.+
T Consensus 233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~--kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~-g~~~v~~~~~ 308 (445)
T PRK14904 233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGG--KSTFMAELM-QNRGQITAVDRYPQKLEKIRSHASAL-GITIIETIEG 308 (445)
T ss_pred EEeCHHHHHHHHhcCCCCCCEEEEECCCCCH--HHHHHHHHh-CCCcEEEEEECCHHHHHHHHHHHHHh-CCCeEEEEeC
Confidence 4444444555555555555799999999998 777777543 34689999999999999999999999 998 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCc-------------------------ccHHHHHH-hccCCCceEEEEeC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSK-------------------------DFARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~-------------------------~Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
|+.+..+. ..||.||+|+--. ...+++.. .+.++|||.+|..-
T Consensus 309 Da~~~~~~-~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 309 DARSFSPE-EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred cccccccC-CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99876532 4799999995210 12235543 36779999999866
No 48
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.15 E-value=4.5e-10 Score=92.99 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC
Q 027409 32 LLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE 110 (223)
Q Consensus 32 fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~ 110 (223)
+|...+...+.++|||+|||+|+ .+++++. ..++.+|+.+|+|++.++.|++|++.. +++ ++++.+|..+-++
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~--i~~~la~--~~~~~~v~~vDi~~~a~~~a~~n~~~n-~~~~v~~~~~d~~~~~~- 95 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGV--ISLALAK--RGPDAKVTAVDINPDALELAKRNAERN-GLENVEVVQSDLFEALP- 95 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSH--HHHHHHH--TSTCEEEEEEESBHHHHHHHHHHHHHT-TCTTEEEEESSTTTTCC-
T ss_pred HHHHHHhhccCCeEEEecCChHH--HHHHHHH--hCCCCEEEEEcCCHHHHHHHHHHHHhc-Ccccccccccccccccc-
Confidence 44444444489999999999998 6767764 344678999999999999999999999 998 9999999988666
Q ss_pred CCCccEEEEeC----CCc----ccHHHHHHh-ccCCCceEEE
Q 027409 111 LKGVDFLVVDC----TSK----DFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 111 L~~fDfVFIDa----~K~----~Y~~~f~~~-~~l~~GgvIV 143 (223)
.+.||+|+..- ... ...++++.. +.|+|||.++
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 35899999973 222 345666544 5678899763
No 49
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.15 E-value=4.9e-10 Score=98.51 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=83.9
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CCc
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~f 114 (223)
+.....++|||||||+|. .++.++.. ..++++|+.+|+++++++.|++++++. |+. ++++.||+.+ ++-- +.|
T Consensus 73 ~~~~~g~~VLDiG~G~G~--~~~~~a~~-~g~~~~v~gvD~s~~~l~~A~~~~~~~-g~~~v~~~~~d~~~-l~~~~~~f 147 (272)
T PRK11873 73 AELKPGETVLDLGSGGGF--DCFLAARR-VGPTGKVIGVDMTPEMLAKARANARKA-GYTNVEFRLGEIEA-LPVADNSV 147 (272)
T ss_pred ccCCCCCEEEEeCCCCCH--HHHHHHHH-hCCCCEEEEECCCHHHHHHHHHHHHHc-CCCCEEEEEcchhh-CCCCCCce
Confidence 445677899999999997 55555543 345689999999999999999999998 987 9999999865 4422 479
Q ss_pred cEEEEeCC---CcccHHHHHH-hccCCCceEEEEeCCCC
Q 027409 115 DFLVVDCT---SKDFARVLRF-ARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 115 DfVFIDa~---K~~Y~~~f~~-~~~l~~GgvIV~DNvl~ 149 (223)
|+|+..+. ..+..++|+. .+.|+|||.++.-++..
T Consensus 148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 148 DVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred eEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 99998874 2345677864 47789999999876553
No 50
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=4.7e-10 Score=105.89 Aligned_cols=118 Identities=12% Similarity=0.158 Sum_probs=88.8
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ 103 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd 103 (223)
++....+++..++....-.+|||+|||.|. .|+.+|.. +.+.|+|+++|+++++++.+++|+++. |+. |+++.+|
T Consensus 236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~-~~~~g~v~a~D~~~~rl~~~~~n~~r~-g~~~v~~~~~D 311 (434)
T PRK14901 236 VQDRSAQLVAPLLDPQPGEVILDACAAPGG--KTTHIAEL-MGDQGEIWAVDRSASRLKKLQENAQRL-GLKSIKILAAD 311 (434)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEeCCCCch--hHHHHHHH-hCCCceEEEEcCCHHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 344455666666655566899999999998 77777754 345689999999999999999999999 998 9999999
Q ss_pred hHHHhcC---C-CCccEEEEeCCCcc-------------------------cHHHHH-HhccCCCceEEEEeC
Q 027409 104 AEEVMGE---L-KGVDFLVVDCTSKD-------------------------FARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 104 A~evL~~---L-~~fDfVFIDa~K~~-------------------------Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
+.+.... . +.||.||+|+--.. -.+.++ +.+.++|||.+|.-.
T Consensus 312 ~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 312 SRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred hhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9876532 2 37999999974211 134454 346779999887654
No 51
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.12 E-value=5e-10 Score=85.43 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=75.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfVF 118 (223)
.+|||+|||.|. ..++++... ..+++.+|+||+.++.|+.++... ++. ++++.||+.+..+.+ .+||+|+
T Consensus 2 ~~vlD~~~G~G~--~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 2 DRVLDPGCGSGT--FLLAALRRG---AARVTGVDIDPEAVELARRNLPRN-GLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp EEEEEETSTTCH--HHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHC-TTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CEEEEcCcchHH--HHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHc-cCCceEEEEECchhhchhhccCceeEEEE
Confidence 479999999997 555555432 479999999999999999999998 885 999999999988655 4899999
Q ss_pred EeCCCc-----------ccHHHHHHh-ccCCCceEEEE
Q 027409 119 VDCTSK-----------DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 119 IDa~K~-----------~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.|.-=. .|..+++.+ +.+++||++++
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 985322 356777755 56799998874
No 52
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.12 E-value=1.7e-09 Score=93.51 Aligned_cols=115 Identities=11% Similarity=0.116 Sum_probs=82.7
Q ss_pred HHHHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecch
Q 027409 29 VAELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQA 104 (223)
Q Consensus 29 ~g~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA 104 (223)
..+++..++.. ....+|||||||+|. .++.++.....++++++.+|+++++++.|+++++.. +.. ++++.||+
T Consensus 39 ~~~~~~~l~~~~~~~~~~iLDlGcG~G~--~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-~~~~~v~~~~~d~ 115 (239)
T TIGR00740 39 IITAIGMLAERFVTPDSNVYDLGCSRGA--ATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-HSEIPVEILCNDI 115 (239)
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCCH--HHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEECCh
Confidence 33444444432 255689999999998 666676543446899999999999999999999987 654 99999999
Q ss_pred HHHhcCCCCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 105 EEVMGELKGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.+.- +..+|+|++-.. .++...+++.+ +.|+|||.+++-+.+
T Consensus 116 ~~~~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 116 RHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhCC--CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 8742 346898876532 22345677654 677888888876644
No 53
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=7.3e-10 Score=104.40 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
++.....+...++......+|||+|||.|. .|+.++... ++++|+.+|.++++++.+++|+++. |+.++++.+|+
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~--~t~~la~~~--~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~ 302 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGG--KTAHILELA--PQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDA 302 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCCh--HHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCc
Confidence 455556666666677777899999999998 777776543 2489999999999999999999998 98889999999
Q ss_pred HHHhcCC--CCccEEEEeCCCcc-------------------------cHHHHH-HhccCCCceEEEEeC-CCCCC
Q 027409 105 EEVMGEL--KGVDFLVVDCTSKD-------------------------FARVLR-FARFSNKGAVLAFKN-AFQRS 151 (223)
Q Consensus 105 ~evL~~L--~~fDfVFIDa~K~~-------------------------Y~~~f~-~~~~l~~GgvIV~DN-vl~~g 151 (223)
.+....+ ++||.||+|+--.. +.++++ +.+.++|||.+|.-- .++..
T Consensus 303 ~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 303 RDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred ccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 8743322 37999999984221 234565 336779999887443 44433
No 54
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.11 E-value=8.4e-10 Score=96.75 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 26 ESGVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 26 ~p~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
.|.+...|..|.+. .+.++||+||||+|+ .+++++. .. ..+++.+|+|+.+++.|++|++.. ++. +++..|
T Consensus 103 h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~--l~i~~~~--~g-~~~v~giDis~~~l~~A~~n~~~~-~~~~~~~~~~~ 176 (250)
T PRK00517 103 HPTTRLCLEALEKLVLPGKTVLDVGCGSGI--LAIAAAK--LG-AKKVLAVDIDPQAVEAARENAELN-GVELNVYLPQG 176 (250)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCcHHH--HHHHHHH--cC-CCeEEEEECCHHHHHHHHHHHHHc-CCCceEEEccC
Confidence 34566667777654 478899999999998 6666543 22 247999999999999999999998 884 777766
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+. +||+|+.+...+.+..+++.+ +.++|||.++.-....
T Consensus 177 ~~--------~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 177 DL--------KADVIVANILANPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred CC--------CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 53 799999988777778888754 6789999999876543
No 55
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=1.1e-09 Score=99.44 Aligned_cols=116 Identities=18% Similarity=0.108 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHH-h-c--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--E
Q 027409 24 IKESGVAELLSAMAA-G-W--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~-~-~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I 97 (223)
+..|++..++...+. . . ++++|||+|||+|+ .+++++.. .++.+++.+|++++.++.|++|.++. |+. |
T Consensus 112 ipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~--iai~la~~--~p~~~V~avDis~~al~~A~~n~~~~-~l~~~i 186 (307)
T PRK11805 112 VPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGC--IAIACAYA--FPDAEVDAVDISPDALAVAEINIERH-GLEDRV 186 (307)
T ss_pred CCCCchHHHHHHHHHHHhccCCCCEEEEEechhhH--HHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCcE
Confidence 456778777776554 2 1 23799999999998 66677643 34689999999999999999999998 885 9
Q ss_pred EEEecchHHHhcCCCCccEEEEeCC----------------------------CcccHHHHHHh-ccCCCceEEEEe
Q 027409 98 EVIVRQAEEVMGELKGVDFLVVDCT----------------------------SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 98 ~li~GdA~evL~~L~~fDfVFIDa~----------------------------K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+++.||+.+.++. +.||+|+.|-- -+.|..++..+ +.|+|||.++++
T Consensus 187 ~~~~~D~~~~l~~-~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 187 TLIESDLFAALPG-RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred EEEECchhhhCCC-CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999887653 37999998720 02245556544 567999999985
No 56
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.08 E-value=1.2e-09 Score=102.93 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=87.0
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
++....+++..++......+|||+|||.|+ .|+.+|... + +|+|+++|+++++++.+++|+++. |+. ++++.|
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~--kt~~la~~~-~-~~~v~a~D~~~~~l~~~~~n~~r~-g~~~~v~~~~~ 296 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDACAAPGG--KTTHILELA-P-QAQVVALDIHEHRLKRVYENLKRL-GLTIKAETKDG 296 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEeCCCccH--HHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecc
Confidence 344566666666676677899999999998 777777543 3 689999999999999999999999 987 555788
Q ss_pred chHHHhc--CCCCccEEEEeCCCcc-------------------------cHHHHH-HhccCCCceEEEEeC
Q 027409 103 QAEEVMG--ELKGVDFLVVDCTSKD-------------------------FARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~--~L~~fDfVFIDa~K~~-------------------------Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
|+.+... ....||.||+|+--.. ..++++ +.+.++|||.+|.--
T Consensus 297 d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 297 DGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred ccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8765332 2247999999963221 134555 346779999988764
No 57
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.07 E-value=2.5e-09 Score=91.79 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=88.0
Q ss_pred CCcHHHHHHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
+..|++..++..++... ++++|||+|||.|+ .++.++.. .++.+++.+|+++++++.|+++++.. |+. ++++
T Consensus 68 ~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~--~~~~l~~~--~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~ 142 (251)
T TIGR03534 68 IPRPDTEELVEAALERLKKGPLRVLDLGTGSGA--IALALAKE--RPDARVTAVDISPEALAVARKNAARL-GLDNVTFL 142 (251)
T ss_pred cCCCChHHHHHHHHHhcccCCCeEEEEeCcHhH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHc-CCCeEEEE
Confidence 34566777777776655 44599999999998 66677643 24579999999999999999999998 888 9999
Q ss_pred ecchHHHhcCCCCccEEEEeCC-----------C------------------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 101 VRQAEEVMGELKGVDFLVVDCT-----------S------------------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~-----------K------------------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.||+.+.++. +.||+|+.+.- + ..|..+++.+ +.|++||.++...
T Consensus 143 ~~d~~~~~~~-~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 143 QSDWFEPLPG-GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ECchhccCcC-CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9999875432 57999998521 0 1134555544 5679999999864
No 58
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.06 E-value=1.3e-09 Score=92.13 Aligned_cols=99 Identities=8% Similarity=-0.014 Sum_probs=76.2
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCc
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~f 114 (223)
.+...++.+|||||||+|+ .+++||. .+++|+.+|.++++++.|++..++. |+.+++..+|..+ . .+ +.|
T Consensus 25 ~~~~~~~~~vLDiGcG~G~--~a~~la~----~g~~V~~iD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~-~-~~~~~f 95 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGR--NSLYLSL----AGYDVRAWDHNPASIASVLDMKARE-NLPLRTDAYDINA-A-ALNEDY 95 (195)
T ss_pred HhccCCCCcEEEeCCCCCH--HHHHHHH----CCCeEEEEECCHHHHHHHHHHHHHh-CCCceeEeccchh-c-cccCCC
Confidence 3455678999999999998 7778864 2679999999999999999999888 8888888888753 1 22 479
Q ss_pred cEEEEe-----CCCcccHHHHHHh-ccCCCceEEE
Q 027409 115 DFLVVD-----CTSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 115 DfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
|+||.- ...++...+++.+ +.|+|||.++
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 999753 2345567788755 6779999743
No 59
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=3.1e-09 Score=93.87 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE 105 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ 105 (223)
.-.-+.+-.+.....+.+||+||||+|- .++.+++... .|+||-+|+++.|++.|++-..+. |.+ |++++|||.
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd--~a~~~~k~~g--~g~v~~~D~s~~ML~~a~~k~~~~-~~~~i~fv~~dAe 111 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGD--MALLLAKSVG--TGEVVGLDISESMLEVAREKLKKK-GVQNVEFVVGDAE 111 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccH--HHHHHHHhcC--CceEEEEECCHHHHHHHHHHhhcc-CccceEEEEechh
Confidence 3345555555555578999999999998 8888887654 799999999999999999999998 888 999999998
Q ss_pred HHhcCC--CCccEEEEeC---CCcccHHHHH-HhccCCCceEEEEeCCCCCC
Q 027409 106 EVMGEL--KGVDFLVVDC---TSKDFARVLR-FARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 106 evL~~L--~~fDfVFIDa---~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g 151 (223)
+ || + +.||+|.+.- +-.++...+. ..|.++|||.+++.....+.
T Consensus 112 ~-LP-f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 112 N-LP-FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred h-CC-CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 8 56 4 4899999985 3456777785 55889999999998877644
No 60
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.05 E-value=2.6e-09 Score=100.34 Aligned_cols=113 Identities=22% Similarity=0.154 Sum_probs=87.6
Q ss_pred CcHHHHH-HHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 25 KESGVAE-LLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 25 i~p~~g~-fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
..+++.+ ++..+... .+..+|||+|||+|+ .+++||.. ..+|+++|.++++++.|++|++.. |+. |++
T Consensus 272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~--~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~-~~~nv~~ 344 (431)
T TIGR00479 272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGT--FTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELN-GIANVEF 344 (431)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCH--HHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHh-CCCceEE
Confidence 4454433 33334433 345799999999998 78888753 358999999999999999999998 988 999
Q ss_pred EecchHHHhcCC----CCccEEEEeCCCcc-cHHHHHHhccCCCceEEEE
Q 027409 100 IVRQAEEVMGEL----KGVDFLVVDCTSKD-FARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 100 i~GdA~evL~~L----~~fDfVFIDa~K~~-Y~~~f~~~~~l~~GgvIV~ 144 (223)
+.||+.+.++++ ..||+||+|.-... ..++++.+..++++++|.+
T Consensus 345 ~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~~l~~~~ivyv 394 (431)
T TIGR00479 345 LAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIELKPERIVYV 394 (431)
T ss_pred EeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHHhcCCCEEEEE
Confidence 999999987754 26999999987544 8888887766777777654
No 61
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.04 E-value=2.8e-09 Score=95.53 Aligned_cols=116 Identities=15% Similarity=0.031 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 26 ESGVAELLSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
.|.+.-.|.+|.+.. +.++||++|||+|+ .+++++. . ..++++.+|+|+.+++.|++|++.. ++. ++++.+
T Consensus 143 h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~--lai~aa~--~-g~~~V~avDid~~al~~a~~n~~~n-~~~~~~~~~~~ 216 (288)
T TIGR00406 143 HPTTSLCLEWLEDLDLKDKNVIDVGCGSGI--LSIAALK--L-GAAKVVGIDIDPLAVESARKNAELN-QVSDRLQVKLI 216 (288)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCChhH--HHHHHHH--c-CCCeEEEEECCHHHHHHHHHHHHHc-CCCcceEEEec
Confidence 455555666665543 56899999999998 6666653 2 2358999999999999999999988 876 778887
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+...... ++||+|+.+.-...+.+++..+ +.++|||.++.-.++.
T Consensus 217 ~~~~~~~--~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 217 YLEQPIE--GKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred ccccccC--CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 7322211 4899999998877788888755 6779999999877653
No 62
>PLN02244 tocopherol O-methyltransferase
Probab=99.04 E-value=2.7e-09 Score=97.78 Aligned_cols=100 Identities=17% Similarity=-0.010 Sum_probs=77.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcC-CCCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGE-LKGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~-L~~fDf 116 (223)
..+++|||||||+|. .+..|+... +++|+.||+++++++.|+++.++. |+. |+++.+|+.+. +- -+.||+
T Consensus 117 ~~~~~VLDiGCG~G~--~~~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~-g~~~~v~~~~~D~~~~-~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGG--SSRYLARKY---GANVKGITLSPVQAARANALAAAQ-GLSDKVSFQVADALNQ-PFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCH--HHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEEcCcccC-CCCCCCccE
Confidence 356899999999998 777776432 679999999999999999999998 875 99999999773 32 247999
Q ss_pred EEEeCCCc---ccHHHHHH-hccCCCceEEEEeC
Q 027409 117 LVVDCTSK---DFARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 117 VFIDa~K~---~Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
|+.-..-. +-..+|.. .+.|+|||.++.-.
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99844332 23567754 47789999887643
No 63
>PRK03612 spermidine synthase; Provisional
Probab=99.02 E-value=2.3e-09 Score=103.63 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=78.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH--HHhh----cCce-EEEEecchHHHhcCC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA--MYDV----VGWV-SEVIVRQAEEVMGEL 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~--~~~a----~G~~-I~li~GdA~evL~~L 111 (223)
..+|++||+||+|.|. .+..++. .+...+|+.+|+|++.++.||++ +.+. +... ++++.|||.+.+.+.
T Consensus 295 ~~~~~rVL~IG~G~G~--~~~~ll~--~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~ 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGL--ALREVLK--YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL 370 (521)
T ss_pred CCCCCeEEEEcCCccH--HHHHHHh--CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC
Confidence 3589999999999997 5545442 23337999999999999999994 4332 1223 999999999988876
Q ss_pred -CCccEEEEeCCCc-------cc-HHHHHHh-ccCCCceEEEEeC
Q 027409 112 -KGVDFLVVDCTSK-------DF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 112 -~~fDfVFIDa~K~-------~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
++||+|++|.... .| .++|+.+ +.|+|||+++..-
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 5899999997421 22 4577766 5679999999853
No 64
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.01 E-value=2.5e-09 Score=90.60 Aligned_cols=108 Identities=13% Similarity=0.015 Sum_probs=80.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
...|..-+++. ...+.+|||+|||+|. .+++||. .+.+|+.+|.++++++.|+++.+.. ++. |+++.+
T Consensus 17 ~~~~~l~~~l~----~~~~~~vLDiGcG~G~--~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~-~~~~v~~~~~ 85 (197)
T PRK11207 17 RTHSEVLEAVK----VVKPGKTLDLGCGNGR--NSLYLAA----NGFDVTAWDKNPMSIANLERIKAAE-NLDNLHTAVV 85 (197)
T ss_pred CChHHHHHhcc----cCCCCcEEEECCCCCH--HHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHc-CCCcceEEec
Confidence 34555555544 4467999999999998 7778874 2568999999999999999999998 888 999999
Q ss_pred chHHHhcCCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEE
Q 027409 103 QAEEVMGELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
|..+. +--++||+|+.=. ..+.-..++..+ +.|+|||.++
T Consensus 86 d~~~~-~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 86 DLNNL-TFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred ChhhC-CcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 98663 1114799998532 223456777755 6779999743
No 65
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=7.2e-09 Score=89.06 Aligned_cols=96 Identities=13% Similarity=0.092 Sum_probs=74.1
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
-.+|||+|||+|+ .+++++.. ..++++.+|+++++++.|++|++.. |+.++++.+|+.+.++. +.||+|+.|.
T Consensus 37 ~~~vLDlGcG~G~--~~~~la~~---~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~~~-~~fD~Vi~np 109 (223)
T PRK14967 37 GRRVLDLCTGSGA--LAVAAAAA---GAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAVEF-RPFDVVVSNP 109 (223)
T ss_pred CCeEEEecCCHHH--HHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhccC-CCeeEEEECC
Confidence 3699999999997 66666542 2359999999999999999999998 88899999999886543 4799999983
Q ss_pred C---------------------Cc---ccHHHHHH-hccCCCceEEEE
Q 027409 122 T---------------------SK---DFARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 122 ~---------------------K~---~Y~~~f~~-~~~l~~GgvIV~ 144 (223)
- ++ .+..+++. .+.|++||.++.
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 1 00 13445553 367799999885
No 66
>PRK14968 putative methyltransferase; Provisional
Probab=99.00 E-value=5.4e-09 Score=85.66 Aligned_cols=83 Identities=17% Similarity=-0.012 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHH
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEV 107 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~ev 107 (223)
.+|...+...+.++|||+|||.|+ .++.++. . +.+++.+|.+++..+.|++++... +++ ++++.+|+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~--~~~~l~~--~--~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGI--VAIVAAK--N--GKKVVGVDINPYAVECAKCNAKLN-NIRNNGVEVIRSDLFEP 85 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCH--HHHHHHh--h--cceEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEecccccc
Confidence 334444445788899999999998 6666653 2 579999999999999999999987 776 89999998775
Q ss_pred hcCCCCccEEEEeC
Q 027409 108 MGELKGVDFLVVDC 121 (223)
Q Consensus 108 L~~L~~fDfVFIDa 121 (223)
+.+. .||+|+.+.
T Consensus 86 ~~~~-~~d~vi~n~ 98 (188)
T PRK14968 86 FRGD-KFDVILFNP 98 (188)
T ss_pred cccc-CceEEEECC
Confidence 5432 799998763
No 67
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.00 E-value=2.5e-09 Score=91.70 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=73.8
Q ss_pred ccChhHHHHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHH
Q 027409 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRL 83 (223)
Q Consensus 4 ~w~~~~a~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~ 83 (223)
.||-+- .+.|.+.-.... .+......+...+.+..++.+|||||||+|+ .+..|+... ++++++.||+++++++
T Consensus 8 fw~~~~-g~~~~~rn~~~~-~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~--~~~~L~~~~--~~~~v~giDiS~~~l~ 81 (204)
T TIGR03587 8 FWAGEF-GKEYIDRNSRQS-LVAAKLAMFARALNRLPKIASILELGANIGM--NLAALKRLL--PFKHIYGVEINEYAVE 81 (204)
T ss_pred HhcCcc-cchhhhccccHH-HHHHHHHHHHHHHHhcCCCCcEEEEecCCCH--HHHHHHHhC--CCCeEEEEECCHHHHH
Confidence 477555 333555432111 3333445555666667788899999999998 666675432 4679999999999999
Q ss_pred HHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEEEeCC
Q 027409 84 AYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLVVDCT 122 (223)
Q Consensus 84 ~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVFIDa~ 122 (223)
.|++++.. ++++.||+.+ +. -+.||+||....
T Consensus 82 ~A~~~~~~-----~~~~~~d~~~--~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 82 KAKAYLPN-----INIIQGSLFD--PFKDNFFDLVLTKGV 114 (204)
T ss_pred HHHhhCCC-----CcEEEeeccC--CCCCCCEEEEEECCh
Confidence 99987533 4788899887 32 247999998664
No 68
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.00 E-value=4.6e-09 Score=93.81 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=88.0
Q ss_pred CCcHHHHHHHHHHHHh---cCC-CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--E
Q 027409 24 IKESGVAELLSAMAAG---WNA-KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~---~~a-k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I 97 (223)
+-.|++..++...+.. .++ ++|||+|||+|+ .+++++... ++.+++.+|++++.++.|++|.++. |+. +
T Consensus 93 iPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~--i~l~la~~~--~~~~v~avDis~~al~~a~~n~~~~-~~~~~v 167 (284)
T TIGR00536 93 IPRPETEELVEKALASLISQNPILHILDLGTGSGC--IALALAYEF--PNAEVIAVDISPDALAVAEENAEKN-QLEHRV 167 (284)
T ss_pred CCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHc-CCCCcE
Confidence 4467778887776543 233 799999999998 666666432 3579999999999999999999998 886 9
Q ss_pred EEEecchHHHhcCCCCccEEEEeC----------CC------------------cccHHHHHHh-ccCCCceEEEEeCC
Q 027409 98 EVIVRQAEEVMGELKGVDFLVVDC----------TS------------------KDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 98 ~li~GdA~evL~~L~~fDfVFIDa----------~K------------------~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+++.||..+.++. .+||+|+.+- .+ ..|..++..+ +.|++||++++.--
T Consensus 168 ~~~~~d~~~~~~~-~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 168 EFIQSNLFEPLAG-QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred EEEECchhccCcC-CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 9999999876542 2799999861 00 1355566544 56799999987654
No 69
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.99 E-value=1.1e-08 Score=92.70 Aligned_cols=113 Identities=10% Similarity=0.060 Sum_probs=84.3
Q ss_pred CCcHHHHHHHHH-HH---HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAELLSA-MA---AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~-L~---~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
+..+.+.+-|.. +. ...++.+|||+|||+|. .++.+|. .+++|+.+|.+++.++.|++|.+.. |+. ++
T Consensus 152 Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~--~sl~la~----~~~~V~gvD~s~~av~~A~~n~~~~-~l~~v~ 224 (315)
T PRK03522 152 QTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGG--FGLHCAT----PGMQLTGIEISAEAIACAKQSAAEL-GLTNVQ 224 (315)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCH--HHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHc-CCCceE
Confidence 445555444432 22 22357899999999997 7777764 3579999999999999999999999 988 99
Q ss_pred EEecchHHHhcCC-CCccEEEEeCCCccc-HHHHHHhccCCCceEEE
Q 027409 99 VIVRQAEEVMGEL-KGVDFLVVDCTSKDF-ARVLRFARFSNKGAVLA 143 (223)
Q Consensus 99 li~GdA~evL~~L-~~fDfVFIDa~K~~Y-~~~f~~~~~l~~GgvIV 143 (223)
++.||+.+.+... +.||+|++|--...+ ....+.+..++++.||.
T Consensus 225 ~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivy 271 (315)
T PRK03522 225 FQALDSTQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILY 271 (315)
T ss_pred EEEcCHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEE
Confidence 9999999877644 479999999765554 34445555555666655
No 70
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.97 E-value=5e-09 Score=91.16 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=75.9
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
...+.++|||||||+|. .+..++.. .++++++.||+++++++.|++++.. ++++.+|+.+..+. ++||+|
T Consensus 28 ~~~~~~~vLDiGcG~G~--~~~~la~~--~~~~~v~gvD~s~~~i~~a~~~~~~-----~~~~~~d~~~~~~~-~~fD~v 97 (258)
T PRK01683 28 PLENPRYVVDLGCGPGN--STELLVER--WPAARITGIDSSPAMLAEARSRLPD-----CQFVEADIASWQPP-QALDLI 97 (258)
T ss_pred CCcCCCEEEEEcccCCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHhCCC-----CeEEECchhccCCC-CCccEE
Confidence 44677899999999998 77777654 3468999999999999999987533 58899999765432 489999
Q ss_pred EEeCC---CcccHHHHHHh-ccCCCceEEEEe
Q 027409 118 VVDCT---SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 118 FIDa~---K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
|.... -.+...++..+ +.|+|||.+++.
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 98864 23456777654 677999998873
No 71
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.97 E-value=6.9e-09 Score=100.16 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=88.1
Q ss_pred CCcHHHHHHHHHHHHhc---------------------------CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEe
Q 027409 24 IKESGVAELLSAMAAGW---------------------------NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIV 76 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---------------------------~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE 76 (223)
|--|||..+....+... ++.+|||||||+|+ .++++|.. -++++++++|
T Consensus 94 IPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~--iai~la~~--~p~~~v~avD 169 (506)
T PRK01544 94 IPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGC--IAISLLCE--LPNANVIATD 169 (506)
T ss_pred cCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhH--HHHHHHHH--CCCCeEEEEE
Confidence 66888888887765432 34689999999998 67777643 2468999999
Q ss_pred CCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeC--------------------------CC---cc
Q 027409 77 PDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDC--------------------------TS---KD 125 (223)
Q Consensus 77 ~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa--------------------------~K---~~ 125 (223)
++++.++.|++|+++. |+. |+++.||+.+.++. +.||+|+.+- .. +.
T Consensus 170 is~~al~~A~~N~~~~-~l~~~v~~~~~D~~~~~~~-~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~ 247 (506)
T PRK01544 170 ISLDAIEVAKSNAIKY-EVTDRIQIIHSNWFENIEK-QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQA 247 (506)
T ss_pred CCHHHHHHHHHHHHHc-CCccceeeeecchhhhCcC-CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHH
Confidence 9999999999999998 875 99999999876542 4799999742 00 12
Q ss_pred cHHHHHHh-ccCCCceEEEEeC
Q 027409 126 FARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 126 Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
|..+++.+ +.|++||.++..-
T Consensus 248 ~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred HHHHHHHHHHhccCCCEEEEEE
Confidence 44445443 4679999998863
No 72
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.96 E-value=1.8e-08 Score=85.16 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=77.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
+..+|||||||.|. .++.++... +..++++.+|.+++.++.|++++... +.. ++++.+|+.+.....+.||+|+
T Consensus 51 ~~~~vldiG~G~G~--~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 51 PGDKVLDLACGTGD--LAIALAKAV-GKTGEVVGLDFSEGMLAVGREKLRDL-GLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred CCCeEEEeCCCCCH--HHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHhhccc-ccccCeEEEecccccCCCCCCCccEEE
Confidence 55799999999998 676776543 33689999999999999999999886 654 9999999987432235799999
Q ss_pred EeC---CCcccHHHHHHh-ccCCCceEEEE
Q 027409 119 VDC---TSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 119 IDa---~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.. ...+...+++.+ ..+++||.+++
T Consensus 127 ~~~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 127 IAFGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred EecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 864 234567777755 56788887754
No 73
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.96 E-value=1.8e-08 Score=85.48 Aligned_cols=110 Identities=8% Similarity=0.073 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHh
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVM 108 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL 108 (223)
.|.++|.....-+++|+++||+|. .++.++ .+. ..+++.+|.|++.++.+++|++.. |+. ++++.+|+.+.|
T Consensus 39 a~f~~l~~~~~g~~vLDLfaGsG~--lglea~--srg-a~~v~~vE~~~~a~~~~~~N~~~~-~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 39 LFFNILRPEIQGAHLLDVFAGSGL--LGEEAL--SRG-AKVAFLEEDDRKANQTLKENLALL-KSGEQAEVVRNSALRAL 112 (189)
T ss_pred HHHHHHHHhcCCCEEEEecCCCcH--HHHHHH--hCC-CCEEEEEeCCHHHHHHHHHHHHHh-CCcccEEEEehhHHHHH
Confidence 455555555577899999999996 554443 221 238999999999999999999998 886 999999999888
Q ss_pred cCC---C-CccEEEEeC--CCcccHHHHHHh---ccCCCceEEEEeC
Q 027409 109 GEL---K-GVDFLVVDC--TSKDFARVLRFA---RFSNKGAVLAFKN 146 (223)
Q Consensus 109 ~~L---~-~fDfVFIDa--~K~~Y~~~f~~~---~~l~~GgvIV~DN 146 (223)
+.+ . .||+||+|- .+..|.+.++++ ..++++|+||+..
T Consensus 113 ~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 113 KFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 754 2 489999997 456677788765 3459999999864
No 74
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.95 E-value=9.9e-09 Score=73.02 Aligned_cols=96 Identities=24% Similarity=0.187 Sum_probs=73.3
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhc-CCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMG-ELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~-~L~~fDfVFIDa 121 (223)
+|+|+|||.|. .+..++. ....+++.+|.+++..+.+++..+.. +.. ++++.+|..+... ...+||+||.+.
T Consensus 1 ~ildig~G~G~--~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGA--LALALAS---GPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccH--HHHHHhc---CCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEcc
Confidence 58999999997 5555543 34679999999999999998755544 445 9999999999765 346899999987
Q ss_pred C----CcccHHHHHHh-ccCCCceEEEEe
Q 027409 122 T----SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 122 ~----K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
. .+.+..+++.+ ..+++||.++.-
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 5 33457777755 556999998763
No 75
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.94 E-value=1.5e-09 Score=81.76 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=67.8
Q ss_pred EEEEccCcchHHHHHHHHHhcC-CCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE-eC-
Q 027409 45 IVEAWTHGGPITTSIGLAIAAR-HTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV-DC- 121 (223)
Q Consensus 45 ILEIGT~~Gys~Stl~la~A~~-~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI-Da- 121 (223)
|||+|||+|- .+..++.... .+..+++.+|+++++++.|++++++. +..++++.+|+.+.-..-++||+|+. -+
T Consensus 1 ILDlgcG~G~--~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGR--VTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-GPKVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSH--HHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-TTTSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcH--HHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-CCceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999997 6666665441 12379999999999999999999988 88899999999874222358999999 43
Q ss_pred ----CCcccHHHHHHh-ccCCCce
Q 027409 122 ----TSKDFARVLRFA-RFSNKGA 140 (223)
Q Consensus 122 ----~K~~Y~~~f~~~-~~l~~Gg 140 (223)
++++-..+|+.+ +.++|||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 344556777654 6678887
No 76
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.94 E-value=7.2e-09 Score=88.09 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=77.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEe
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFID 120 (223)
++|||||||.|. .+..++.. .++++++.+|++++.++.|++++++. |+. |+++.+|+.+. +.-+.||+|+.-
T Consensus 1 ~~vLDiGcG~G~--~~~~la~~--~~~~~v~gid~s~~~~~~a~~~~~~~-gl~~~i~~~~~d~~~~-~~~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGS--DLIDLAER--HPHLQLHGYTISPEQAEVGRERIRAL-GLQGRIRIFYRDSAKD-PFPDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHhc-CCCcceEEEecccccC-CCCCCCCEeehH
Confidence 589999999997 66666543 24579999999999999999999998 887 99999998654 211479999863
Q ss_pred C---CCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 121 C---TSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 121 a---~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
. .-.+...+|+.+ +.|+|||.++.-+..
T Consensus 75 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 2 123467888765 677999999887653
No 77
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.94 E-value=3.7e-09 Score=92.62 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=72.7
Q ss_pred HHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC
Q 027409 32 LLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE 110 (223)
Q Consensus 32 fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~ 110 (223)
.+.-++....+.+||++|||+|. .++.++... .++|+|+.+|.++++++.|++.+++. |.. |+++.|||.+ |+-
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~--~~~~l~~~~-~~~~~v~~vD~s~~ML~~a~~k~~~~-~~~~i~~v~~da~~-lp~ 112 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGD--VTRELARRV-GPNGKVVGVDISPGMLEVARKKLKRE-GLQNIEFVQGDAED-LPF 112 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSH--HHHHHGGGS-S---EEEEEES-HHHHHHHHHHHHHT-T--SEEEEE-BTTB---S
T ss_pred HHHhccCCCCCCEEEEeCCChHH--HHHHHHHHC-CCccEEEEecCCHHHHHHHHHHHHhh-CCCCeeEEEcCHHH-hcC
Confidence 34444566778899999999998 777776543 45789999999999999999999998 887 9999999988 442
Q ss_pred C-CCccEEEEeCC---CcccHHHHH-HhccCCCceEEEEe
Q 027409 111 L-KGVDFLVVDCT---SKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 111 L-~~fDfVFIDa~---K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
- +.||.|++=-. -.+..+.+. ..+.|+|||.+++=
T Consensus 113 ~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 2 57999998653 334566675 45788999977653
No 78
>PRK04266 fibrillarin; Provisional
Probab=98.93 E-value=9.2e-09 Score=89.81 Aligned_cols=110 Identities=12% Similarity=0.048 Sum_probs=77.8
Q ss_pred HHHHHHH--HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 30 AELLSAM--AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L--~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
+.+|.-+ +...+-.+|||+|||+|+ .++.++... + .|+|+++|+++++++.++++.++. -.|+++.||+.+.
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~--~~~~la~~v-~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~ 132 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGT--TVSHVSDIV-E-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKP 132 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCH--HHHHHHHhc-C-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCc
Confidence 4444433 444466799999999998 677777543 3 689999999999999887765543 1278899998752
Q ss_pred h--cCC-CCccEEEEeCC-CcccHHHHHH-hccCCCceEEEEe
Q 027409 108 M--GEL-KGVDFLVVDCT-SKDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 108 L--~~L-~~fDfVFIDa~-K~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
. ..+ +.||+||.|.. +.++...++. .+.|+|||.++.-
T Consensus 133 ~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 133 ERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred chhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 122 47999999975 3344455654 4678999998874
No 79
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.93 E-value=1.9e-08 Score=88.97 Aligned_cols=107 Identities=8% Similarity=-0.002 Sum_probs=76.1
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh--hcCce-EEEEecchHHHhcCC-C
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD--VVGWV-SEVIVRQAEEVMGEL-K 112 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~--a~G~~-I~li~GdA~evL~~L-~ 112 (223)
+......+|||||||+|+ .++.++... .+.++|+.+|+++++++.|++.... ..+.. |+++.+|+.+ ++-- +
T Consensus 69 ~~~~~~~~VLDlGcGtG~--~~~~la~~~-~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-lp~~~~ 144 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGD--LAFLLSEKV-GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-LPFDDC 144 (261)
T ss_pred hCCCCCCEEEEECCcCCH--HHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-CCCCCC
Confidence 345567899999999998 666666432 3468999999999999999987542 10333 9999999876 3422 3
Q ss_pred CccEEEEeCCCc---ccHHHHH-HhccCCCceEEEEeCC
Q 027409 113 GVDFLVVDCTSK---DFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 113 ~fDfVFIDa~K~---~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
.||+|++--.-. +-..++. ..+.|+|||.++.-+.
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 799999864322 3355665 4478899998766543
No 80
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.93 E-value=1.3e-08 Score=87.08 Aligned_cols=116 Identities=18% Similarity=0.113 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.++|.-.+++...+...+.++|||||||.|. .+..++. .+.+++.+|.+++.++.|++++... +..++++.++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~--~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~~ 103 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGI--LSESMAR----LGADVTGIDASEENIEVARLHALES-GLKIDYRQTT 103 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCCCCH--HHHHHHH----cCCeEEEEcCCHHHHHHHHHHHHHc-CCceEEEecC
Confidence 5566666777777777788999999999997 5555543 2578999999999999999999988 7778999999
Q ss_pred hHHHhcCC-CCccEEEEeCCC---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 104 AEEVMGEL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 104 A~evL~~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.+..... +.||+|+....- .+...+++.+ +.+++||.+++..
T Consensus 104 ~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 104 AEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred HHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 98876433 589999875321 2335566655 5678999888753
No 81
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.92 E-value=1.3e-08 Score=92.69 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=87.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.+.|..+..+..++...+-.+|||+|||+|. ..+..+. .+++++.+|+|+++++.|++|++.+ |+. ++++.+
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~--~lieaa~----~~~~v~g~Di~~~~~~~a~~nl~~~-g~~~i~~~~~ 237 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGG--FLIEAGL----MGAKVIGCDIDWKMVAGARINLEHY-GIEDFFVKRG 237 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCH--HHHHHHH----hCCeEEEEcCCHHHHHHHHHHHHHh-CCCCCeEEec
Confidence 5677778777777777677799999999996 4444332 2679999999999999999999999 998 899999
Q ss_pred chHHHhcC-CCCccEEEEeCC-------C-----cccHHHHHHh-ccCCCceEEEE
Q 027409 103 QAEEVMGE-LKGVDFLVVDCT-------S-----KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 103 dA~evL~~-L~~fDfVFIDa~-------K-----~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|+.+ ++. -+.||.|+.|.- + ..|.++++.+ +.++|||.++.
T Consensus 238 D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 238 DATK-LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred chhc-CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 9987 343 247999999931 1 2267777754 67799986654
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.92 E-value=1.2e-08 Score=91.04 Aligned_cols=97 Identities=9% Similarity=0.059 Sum_probs=76.8
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDf 116 (223)
...++.+|||||||.|. .+++||. .+.+|+.+|.++++++.|+++.++. ++.+++..+|..+. .+ +.||+
T Consensus 117 ~~~~~~~vLDlGcG~G~--~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~--~~~~~fD~ 187 (287)
T PRK12335 117 QTVKPGKALDLGCGQGR--NSLYLAL----LGFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSA--SIQEEYDF 187 (287)
T ss_pred hccCCCCEEEeCCCCCH--HHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhcc--cccCCccE
Confidence 34678899999999998 7777764 2679999999999999999999988 88888988887652 22 47999
Q ss_pred EEEeC-----CCcccHHHHHHh-ccCCCceEEE
Q 027409 117 LVVDC-----TSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 117 VFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
|+.=. +.++...+++.+ +.++|||.++
T Consensus 188 I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 188 ILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 98653 345667788755 5679999844
No 83
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.90 E-value=4.3e-08 Score=83.08 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHHHh----cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 26 ESGVAELLSAMAAG----WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 26 ~p~~g~fL~~L~~~----~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
.+...+++.-.+.. .+..+|||+|||+|+ .+..++.. +.+++.+|.+++.++.|++++.+. +.. +++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~--~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~ 98 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGL--LSEPLARL----GANVTGIDASEENIEVAKLHAKKD-PLLKIEYR 98 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCH--HHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHc-CCCceEEE
Confidence 44455666666664 358899999999998 66666532 457999999999999999999988 885 9999
Q ss_pred ecchHHHhcCC-CCccEEEEeC---CCcccHHHHHHh-ccCCCceEEEEe
Q 027409 101 VRQAEEVMGEL-KGVDFLVVDC---TSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 101 ~GdA~evL~~L-~~fDfVFIDa---~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.+|+.+..... ++||+|+... ...+...++..+ +.+++||.+++.
T Consensus 99 ~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 99 CTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred eCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99999876654 5899999863 234566777755 567889987764
No 84
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.89 E-value=1.8e-08 Score=91.00 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC----ce-EEEEecch
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG----WV-SEVIVRQA 104 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G----~~-I~li~GdA 104 (223)
..++-++++. +||+||.||-|-| +++.-... ..+--++|-+|+|++.++.||++|... . .+ ++++.+|+
T Consensus 66 l~h~~~~ah~-~pk~VLiiGgGdG---~tlRevlk-h~~ve~i~~VEID~~Vi~~ar~~l~~~-~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 66 LAHVPLLAHP-NPKRVLIIGGGDG---GTLREVLK-HLPVERITMVEIDPAVIELARKYLPEP-SGGADDPRVEIIIDDG 139 (282)
T ss_pred HHhchhhhCC-CCCeEEEECCCcc---HHHHHHHh-cCCcceEEEEEcCHHHHHHHHHhccCc-ccccCCCceEEEeccH
Confidence 3334444443 5589999999988 45544322 233478999999999999999999865 2 34 99999999
Q ss_pred HHHhcCCC-CccEEEEeCCCc-cc------HHHHHHh-ccCCCceEEEEeC
Q 027409 105 EEVMGELK-GVDFLVVDCTSK-DF------ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 105 ~evL~~L~-~fDfVFIDa~K~-~Y------~~~f~~~-~~l~~GgvIV~DN 146 (223)
.+.|++.. +||.|++|+.-. .. .+||+.| +.|+++||+|+.+
T Consensus 140 ~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 140 VEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred HHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 99999875 799999998543 34 7888988 4679999999984
No 85
>PRK08317 hypothetical protein; Provisional
Probab=98.89 E-value=2.8e-08 Score=83.43 Aligned_cols=112 Identities=17% Similarity=0.021 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
+.+..++......+|||||||+|. .+..++... .+.++++++|.++++++.|+++.... +..++++.+|+.+.--.
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~--~~~~~a~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGN--DARELARRV-GPEGRVVGIDRSEAMLALAKERAAGL-GPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCH--HHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHhhCC-CCceEEEecccccCCCC
Confidence 344445566677899999999997 666665432 34689999999999999999984433 33399999998652111
Q ss_pred CCCccEEEEeCCC---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 111 LKGVDFLVVDCTS---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 111 L~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.+.||+|+....- .+...+++.+ +.++|||.++.-.
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 2479999987432 3456677654 6679999887644
No 86
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.89 E-value=4.4e-09 Score=76.05 Aligned_cols=90 Identities=19% Similarity=0.087 Sum_probs=67.3
Q ss_pred EEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEEEeCCC-
Q 027409 46 VEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLVVDCTS- 123 (223)
Q Consensus 46 LEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVFIDa~K- 123 (223)
||||||.|. .+..|+.. ++..++++|+++++++.|++.+... +. +++.+|+.+. +- -+.||+|+.-..=
T Consensus 1 LdiG~G~G~--~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~~~-~~--~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGR--FAAALAKR---GGASVTGIDISEEMLEQARKRLKNE-GV--SFRQGDAEDL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSH--HHHHHHHT---TTCEEEEEES-HHHHHHHHHHTTTS-TE--EEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCH--HHHHHHhc---cCCEEEEEeCCHHHHHHHHhccccc-Cc--hheeehHHhC-cccccccccccccccee
Confidence 899999998 56566542 5789999999999999999998876 54 5999997775 42 2589999987643
Q ss_pred --cccHHHHHHh-ccCCCceEEEE
Q 027409 124 --KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 124 --~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
++..++++.+ +.++|||.+++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 4556777644 77899999875
No 87
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.89 E-value=1.3e-08 Score=89.01 Aligned_cols=116 Identities=15% Similarity=0.073 Sum_probs=83.3
Q ss_pred CCcHHHHHHHHHHHH---hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 24 IKESGVAELLSAMAA---GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~~---~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
+-.|++..++..+.. ..++.+|||+|||.|. .++.++... +.++++.+|++++.++.|++|++.. ... +++
T Consensus 88 ipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~--~~~~la~~~--~~~~v~~iDis~~~l~~a~~n~~~~-~~~~i~~ 162 (275)
T PRK09328 88 IPRPETEELVEWALEALLLKEPLRVLDLGTGSGA--IALALAKER--PDAEVTAVDISPEALAVARRNAKHG-LGARVEF 162 (275)
T ss_pred eCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhC-CCCcEEE
Confidence 345666677776653 3467899999999997 666666443 4689999999999999999999832 223 999
Q ss_pred EecchHHHhcCCCCccEEEEeCC-----------------------------CcccHHHHHHh-ccCCCceEEEEe
Q 027409 100 IVRQAEEVMGELKGVDFLVVDCT-----------------------------SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa~-----------------------------K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+.+|+.+.++ -+.||+|+.+.- -+.|..+++.+ +.|++||.+++.
T Consensus 163 ~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 163 LQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999866443 147999987520 02245555544 567999999984
No 88
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.89 E-value=1.3e-08 Score=93.32 Aligned_cols=100 Identities=12% Similarity=-0.028 Sum_probs=75.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
...+|||||||+|+ .+..||. .+++|+.||.++++++.|+++.... +.. |+++.+|+.+.-..-+.||+|+
T Consensus 131 ~g~~ILDIGCG~G~--~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~-~~~~~i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGL--LSEPLAR----MGATVTGVDAVDKNVKIARLHADMD-PVTSTIEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCH--HHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhc-CcccceeEEecCHHHhhhccCCCCEEE
Confidence 44689999999998 6767753 3679999999999999999987765 543 9999999976422224799999
Q ss_pred EeCCC---cccHHHHHHh-ccCCCceEEEEeCC
Q 027409 119 VDCTS---KDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 119 IDa~K---~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.-..- .+...++..+ +.++|||.++...+
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 75422 2345677655 67799999998753
No 89
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.88 E-value=3.2e-08 Score=93.62 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=85.6
Q ss_pred CCcHHHHH-HHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAE-LLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~-fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
++.+.+.+ ++..++.. ....+|||+|||+|. .+++||.. .++++.+|.++++++.|++|.+.. |+. ++
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~--~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~-~~~~v~ 348 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGN--FTLPLARQ----AAEVVGVEGVEAMVERARENARRN-GLDNVT 348 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCH--HHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHc-CCCceE
Confidence 44555434 33333333 234799999999998 77777643 368999999999999999999998 887 99
Q ss_pred EEecchHHHhcCC----CCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 99 VIVRQAEEVMGEL----KGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 99 li~GdA~evL~~L----~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
++.||+.+.+..+ +.||+|++|.-...-.+.++.+..++++++|.+-
T Consensus 349 ~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 349 FYHANLEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred EEEeChHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEE
Confidence 9999999877542 3699999998766666777766555556665543
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.87 E-value=2.7e-08 Score=93.45 Aligned_cols=110 Identities=17% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhc
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMG 109 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~ 109 (223)
.|+..+- ......+||||||.|. .++.+|.. .++..++.||+++++++.|.+...+. |+. |.++.|||.+.+.
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~--~ll~lA~~--~P~~~~iGIEI~~~~i~~a~~ka~~~-gL~NV~~i~~DA~~ll~ 186 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGR--HLLYQAKN--NPNKLFIGIEIHTPSIEQVLKQIELL-NLKNLLIINYDARLLLE 186 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccH--HHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHHHc-CCCcEEEEECCHHHhhh
Confidence 4444443 3445689999999998 77777643 45789999999999999999999998 998 9999999998776
Q ss_pred CC--CCccEEEE---eCC-Cccc-----HHHHHHh-ccCCCceEEEE--eC
Q 027409 110 EL--KGVDFLVV---DCT-SKDF-----ARVLRFA-RFSNKGAVLAF--KN 146 (223)
Q Consensus 110 ~L--~~fDfVFI---Da~-K~~Y-----~~~f~~~-~~l~~GgvIV~--DN 146 (223)
.+ +.+|.|++ |-| |... ..+++.+ +.|++||.+.. |+
T Consensus 187 ~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 187 LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 55 37999988 333 2222 5677655 77899996544 55
No 91
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.86 E-value=1.7e-08 Score=87.66 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+....++.|..++...++.+|||||||+|. .+..|+. .+.+++.+|+++++++.|+++... ++++.+|
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~~-----~~~~~~d 93 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGW--MSRYWRE----RGSQVTALDLSPPMLAQARQKDAA-----DHYLAGD 93 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCH--HHHHHHH----cCCeEEEEECCHHHHHHHHhhCCC-----CCEEEcC
Confidence 3455566655555555568899999999997 5555542 357999999999999999887532 4678899
Q ss_pred hHHHhcCC-CCccEEEEeCC---CcccHHHHHH-hccCCCceEEEEeCC
Q 027409 104 AEEVMGEL-KGVDFLVVDCT---SKDFARVLRF-ARFSNKGAVLAFKNA 147 (223)
Q Consensus 104 A~evL~~L-~~fDfVFIDa~---K~~Y~~~f~~-~~~l~~GgvIV~DNv 147 (223)
+.+ ++-- +.||+|+.... -.+....+.. .+.++|||.+++-..
T Consensus 94 ~~~-~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 94 IES-LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ccc-CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 866 3322 47999998653 2344566654 467899999998654
No 92
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.85 E-value=1.6e-08 Score=89.59 Aligned_cols=103 Identities=9% Similarity=-0.076 Sum_probs=76.0
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDF 116 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDf 116 (223)
...+..+|||||||+|. .+..|+.. .+++++.+|+++++++.|++++... ..|+++.+|+.+. +- -+.||+
T Consensus 49 ~l~~~~~VLDiGcG~G~--~a~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~-~~~~~~FD~ 120 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGG--GCKYINEK---YGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKK-DFPENTFDM 120 (263)
T ss_pred CCCCCCEEEEEcCCCCh--hhHHHHhh---cCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccC-CCCCCCeEE
Confidence 44566899999999997 56666532 3679999999999999999987543 2289999998752 21 147999
Q ss_pred EEE-eCC----CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 117 LVV-DCT----SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 117 VFI-Da~----K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
|+. ++- .++-..+|..+ +.|+|||.+++-...
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 998 542 23556778654 678999999876543
No 93
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.85 E-value=2.9e-08 Score=83.71 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=73.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
.++++|||||||.|+ .+..++.. .+..+++.+|.+++.++.|++.+... ++++.+|+.+....-+.||+|+.
T Consensus 33 ~~~~~vLDlG~G~G~--~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 33 FIPASVLDIGCGTGY--LTRALLKR--FPQAEFIALDISAGMLAQAKTKLSEN----VQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCCeEEEECCCccH--HHHHHHHh--CCCCcEEEEeChHHHHHHHHHhcCCC----CeEEecchhhCCCCCCceeEEEE
Confidence 456899999999998 66667654 24578999999999999998876533 78999999874322247999998
Q ss_pred eCCC---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 120 DCTS---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 120 Da~K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
...- .+...+++.+ +.+++||.+++..
T Consensus 105 ~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 105 NLALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 7532 2445677755 5679999998764
No 94
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.84 E-value=4.2e-08 Score=87.96 Aligned_cols=105 Identities=10% Similarity=-0.080 Sum_probs=78.7
Q ss_pred HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC
Q 027409 35 AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK 112 (223)
Q Consensus 35 ~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~ 112 (223)
..+...+.++||+||||.|. .+++++.. .++++++.+|. |+.++.|++++++. |+. |+++.||+.+. .+.
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~--~~~~~~~~--~p~~~~~~~D~-~~~~~~a~~~~~~~-gl~~rv~~~~~d~~~~--~~~ 214 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGD--ISAAMLKH--FPELDSTILNL-PGAIDLVNENAAEK-GVADRMRGIAVDIYKE--SYP 214 (306)
T ss_pred HHcCCCCCCEEEEeCCchhH--HHHHHHHH--CCCCEEEEEec-HHHHHHHHHHHHhC-CccceEEEEecCccCC--CCC
Confidence 33445677899999999997 67777654 35689999997 78999999999999 987 99999999862 234
Q ss_pred CccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 113 GVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 113 ~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
++|.|++-. +.+....+|+.+ +.++|||.+++-+.
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 579987654 444446678655 66788887755443
No 95
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.84 E-value=4.9e-08 Score=81.76 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=76.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
..++.+|||+|||.|+ .+..++... +..++++.+|++++..+.+++++. . ...++++.+|+.+....-++||+|+
T Consensus 37 ~~~~~~vldiG~G~G~--~~~~~~~~~-~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~~~~~~D~i~ 111 (223)
T TIGR01934 37 VFKGQKVLDVACGTGD--LAIELAKSA-PDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPFEDNSFDAVT 111 (223)
T ss_pred cCCCCeEEEeCCCCCh--hHHHHHHhc-CCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCCCCCcEEEEE
Confidence 4478899999999998 666666543 333799999999999999999887 3 3348999999988543234799998
Q ss_pred EeC---CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 119 VDC---TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 119 IDa---~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.. .......+++.+ +.++|||.++.-.
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 112 IAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 753 234456677654 5679999887644
No 96
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.83 E-value=5.9e-08 Score=82.37 Aligned_cols=103 Identities=21% Similarity=0.128 Sum_probs=72.0
Q ss_pred HHHHHHHH--hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 31 ELLSAMAA--GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 31 ~fL~~L~~--~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
.++..+.. ..+..+|||||||+|+ .+..|+.. +.+++.+|.++++++.|++++... +.. |+++.+| .+
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~--~~~~l~~~----~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~i~~~~~d-~~ 122 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGS--LSIPLARR----GAKVVASDISPQMVEEARERAPEA-GLAGNITFEVGD-LE 122 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCH--HHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhc-CCccCcEEEEcC-ch
Confidence 45555544 4567899999999998 67677532 467999999999999999999998 883 9999999 33
Q ss_pred HhcCCCCccEEEEeCCC-----cccHHHHHHhc-cCCCceEEE
Q 027409 107 VMGELKGVDFLVVDCTS-----KDFARVLRFAR-FSNKGAVLA 143 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K-----~~Y~~~f~~~~-~l~~GgvIV 143 (223)
.. .+.||+|+.-..- ......+..+. .+++|++|.
T Consensus 123 ~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 SL--LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hc--cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 22 2579999875432 23344555443 334444444
No 97
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.83 E-value=8.5e-08 Score=89.16 Aligned_cols=114 Identities=8% Similarity=-0.022 Sum_probs=85.6
Q ss_pred CCcHHHHHHHH-HHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAELLS-AMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~-~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
+..+.+.+-|. .+... ...++|||+|||+|. .++.+| . .+.+++.||.|++.++.|++|.+.. |+. ++
T Consensus 212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~--~~l~la--~--~~~~v~~vE~~~~av~~a~~N~~~~-~~~~~~ 284 (374)
T TIGR02085 212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGG--FGLHCA--G--PDTQLTGIEIESEAIACAQQSAQML-GLDNLS 284 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccH--HHHHHh--h--cCCeEEEEECCHHHHHHHHHHHHHc-CCCcEE
Confidence 55666655543 33332 356899999999996 666665 2 2468999999999999999999999 987 99
Q ss_pred EEecchHHHhcCC-CCccEEEEeCCCc-ccHHHHHHhccCCCceEEEE
Q 027409 99 VIVRQAEEVMGEL-KGVDFLVVDCTSK-DFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 99 li~GdA~evL~~L-~~fDfVFIDa~K~-~Y~~~f~~~~~l~~GgvIV~ 144 (223)
++.+|+.+.++.. .+||+||+|--.. ...+.++.+..++|+++|.+
T Consensus 285 ~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyv 332 (374)
T TIGR02085 285 FAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYS 332 (374)
T ss_pred EEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEE
Confidence 9999999887654 4799999997543 45666677655666665544
No 98
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.82 E-value=3.9e-08 Score=86.76 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=76.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce---EEEEecchHHHhcCC-C-Cc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV---SEVIVRQAEEVMGEL-K-GV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~---I~li~GdA~evL~~L-~-~f 114 (223)
+|++||-||-|.|. ++-.+. ..++-.+|+.+|+||+..+.|+++|... .+.. ++++.+||.+.|.+. + .|
T Consensus 76 ~p~~VLiiGgG~G~--~~~ell--~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGG--TARELL--KHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSH--HHHHHT--TSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChh--hhhhhh--hcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 79999999999885 332332 2233478999999999999999998863 1322 999999999999986 5 79
Q ss_pred cEEEEeCCCcc------c-HHHHHHh-ccCCCceEEEEeC
Q 027409 115 DFLVVDCTSKD------F-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~------Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
|+|++|+--.. | .++|+.+ +.|++||+++..-
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99999986422 2 5788877 4679999999874
No 99
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.81 E-value=3.7e-08 Score=86.06 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=71.9
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
....+.+|||||||+|. .+..|+.. .++++++.+|+++++++.|++. + ++++.+|+.+. ...+.||+|
T Consensus 26 ~~~~~~~vLDlGcG~G~--~~~~l~~~--~p~~~v~gvD~s~~~~~~a~~~-----~--~~~~~~d~~~~-~~~~~fD~v 93 (255)
T PRK14103 26 GAERARRVVDLGCGPGN--LTRYLARR--WPGAVIEALDSSPEMVAAARER-----G--VDARTGDVRDW-KPKPDTDVV 93 (255)
T ss_pred CCCCCCEEEEEcCCCCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHhc-----C--CcEEEcChhhC-CCCCCceEE
Confidence 34577899999999998 66677643 2468999999999999999752 2 68889999765 333589999
Q ss_pred EEeCCC---cccHHHHHH-hccCCCceEEEEe
Q 027409 118 VVDCTS---KDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 118 FIDa~K---~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
+....- .+-...+.. .+.|+|||.+++-
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 997642 233556654 4678999999873
No 100
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.80 E-value=5e-08 Score=86.09 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHhcC----CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe
Q 027409 26 ESGVAELLSAMAAGWN----AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~----ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.+++..++...+...+ +.+|||+|||+|. .++.++... ++.+++.+|+|++.++.|++|++.. |. +++.
T Consensus 67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~--i~l~la~~~--~~~~v~~vDis~~al~~A~~N~~~~-~~--~~~~ 139 (251)
T TIGR03704 67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGA--VGAALAAAL--DGIELHAADIDPAAVRCARRNLADA-GG--TVHE 139 (251)
T ss_pred CccHHHHHHHHHHhhcccCCCCEEEEecCchHH--HHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHc-CC--EEEE
Confidence 4555555555544332 3589999999998 676766432 3468999999999999999999987 74 7899
Q ss_pred cchHHHhcC-C-CCccEEEEeCC--Cc---------------------------ccHHHHHHh-ccCCCceEEEEeC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCT--SK---------------------------DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~--K~---------------------------~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||+.+.++. + +.||+|+.|.- +. -|.++++.+ +.|++||.++..-
T Consensus 140 ~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 140 GDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred eechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999887764 3 47999999841 00 133555433 5679999998764
No 101
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.79 E-value=2.5e-08 Score=88.67 Aligned_cols=86 Identities=21% Similarity=0.166 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev 107 (223)
+-+|...+.....++|||+|||+|. .+|++ |.+-++.+|+-+|+++++++.|++|++-+ +++ |+++++|..+.
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~--l~L~l--a~r~~~a~I~~VEiq~~~a~~A~~nv~ln-~l~~ri~v~~~Di~~~ 107 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGA--LGLLL--AQRTEKAKIVGVEIQEEAAEMAQRNVALN-PLEERIQVIEADIKEF 107 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCH--HHHHH--hccCCCCcEEEEEeCHHHHHHHHHHHHhC-cchhceeEehhhHHHh
Confidence 6789999999999999999999996 56555 45545699999999999999999999998 888 99999999998
Q ss_pred hcCC--CCccEEEEe
Q 027409 108 MGEL--KGVDFLVVD 120 (223)
Q Consensus 108 L~~L--~~fDfVFID 120 (223)
.+.. ..||+|+..
T Consensus 108 ~~~~~~~~fD~Ii~N 122 (248)
T COG4123 108 LKALVFASFDLIICN 122 (248)
T ss_pred hhcccccccCEEEeC
Confidence 8876 369999875
No 102
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.77 E-value=5.5e-08 Score=89.75 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=81.5
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
+++.+.-+|..|-. ....+|||+|||+|+ .+++++. ..++.+|+.+|+++.+++.|++++++. ++..+++.+|.
T Consensus 181 lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~--ls~~la~--~~p~~~v~~vDis~~Al~~A~~nl~~n-~l~~~~~~~D~ 254 (342)
T PRK09489 181 LDVGSQLLLSTLTP-HTKGKVLDVGCGAGV--LSAVLAR--HSPKIRLTLSDVSAAALESSRATLAAN-GLEGEVFASNV 254 (342)
T ss_pred CCHHHHHHHHhccc-cCCCeEEEeccCcCH--HHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCEEEEccc
Confidence 44445555555543 335689999999998 6767764 334679999999999999999999998 88778888888
Q ss_pred HHHhcCCCCccEEEEeC--------CCcccHHHHHHh-ccCCCceEE-EEeCC
Q 027409 105 EEVMGELKGVDFLVVDC--------TSKDFARVLRFA-RFSNKGAVL-AFKNA 147 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa--------~K~~Y~~~f~~~-~~l~~GgvI-V~DNv 147 (223)
.+.++ +.||+|+.+- +.....+++..+ +.|+|||.+ ++-|-
T Consensus 255 ~~~~~--~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 255 FSDIK--GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccccC--CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 65332 4799999863 122345666644 667777755 34443
No 103
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.77 E-value=1.2e-07 Score=89.88 Aligned_cols=93 Identities=16% Similarity=0.044 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
+-.|++..++..+.... +..+|||+|||+|. .++.++.. .++++++.+|+++++++.|++|.++. |..|+++.|
T Consensus 233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~--IaiaLA~~--~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~g 307 (423)
T PRK14966 233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGA--VAVTVALE--RPDAFVRASDISPPALETARKNAADL-GARVEFAHG 307 (423)
T ss_pred CCCccHHHHHHHhhhccCCCCEEEEEeChhhH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEc
Confidence 45677888888776544 45799999999997 56666532 34689999999999999999999998 877999999
Q ss_pred chHHH-hcCCCCccEEEEeC
Q 027409 103 QAEEV-MGELKGVDFLVVDC 121 (223)
Q Consensus 103 dA~ev-L~~L~~fDfVFIDa 121 (223)
|..+. ++.-++||+|+.+-
T Consensus 308 Dl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 308 SWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred chhccccccCCCccEEEECC
Confidence 99764 22224799999964
No 104
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.74 E-value=8.6e-08 Score=89.78 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=79.1
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc---e-EEEE
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW---V-SEVI 100 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~---~-I~li 100 (223)
++..+--||..|-. ....+|||+|||+|+ .+++++.. .++.+|+.+|.++..++.|++|++.. +. . ++++
T Consensus 213 LD~GtrllL~~lp~-~~~~~VLDLGCGtGv--i~i~la~~--~P~~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~ 286 (378)
T PRK15001 213 LDIGARFFMQHLPE-NLEGEIVDLGCGNGV--IGLTLLDK--NPQAKVVFVDESPMAVASSRLNVETN-MPEALDRCEFM 286 (378)
T ss_pred cChHHHHHHHhCCc-ccCCeEEEEeccccH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEE
Confidence 45444445554432 223699999999998 67777643 45789999999999999999999876 53 2 8999
Q ss_pred ecchHHHhcCCCCccEEEEeCC--Cc------ccHHHHHHh-ccCCCceEEEEe
Q 027409 101 VRQAEEVMGELKGVDFLVVDCT--SK------DFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~--K~------~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.+|+++-++. ..||+|+.+-- .. .-.++|..+ +.|++||.+.+-
T Consensus 287 ~~D~l~~~~~-~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 287 INNALSGVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EccccccCCC-CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999765432 37999999622 11 123556544 567777765543
No 105
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.74 E-value=6.5e-08 Score=91.61 Aligned_cols=112 Identities=11% Similarity=-0.024 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
..++..+. .....+|||||||.|. .++.||.. .+++++.+|+++++++.|+++.... +..|+++.+|+.+..-
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~--~~~~la~~---~~~~v~gvDiS~~~l~~A~~~~~~~-~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGG--GDFYMAEN---FDVHVVGIDLSVNMISFALERAIGR-KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCH--HHHHHHHh---cCCEEEEEECCHHHHHHHHHHhhcC-CCceEEEEcCcccCCC
Confidence 44444432 4466799999999997 66667642 2679999999999999999987654 4449999999876321
Q ss_pred CCCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 110 ELKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 110 ~L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.-+.||+|+.-..=. +...+|..+ +.|+|||.+++....
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 114799999864322 346677644 678999998876543
No 106
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.72 E-value=1.7e-07 Score=77.23 Aligned_cols=101 Identities=16% Similarity=-0.005 Sum_probs=72.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
....+|||||||.|. .+..++.. +++++.+|.|+.+++.++++++.. + .++++.||+.+....-..||.||.
T Consensus 12 ~~~~~vLEiG~G~G~--lt~~l~~~----~~~v~~vE~~~~~~~~~~~~~~~~-~-~v~ii~~D~~~~~~~~~~~d~vi~ 83 (169)
T smart00650 12 RPGDTVLEIGPGKGA--LTEELLER----AARVTAIEIDPRLAPRLREKFAAA-D-NLTVIHGDALKFDLPKLQPYKVVG 83 (169)
T ss_pred CCcCEEEEECCCccH--HHHHHHhc----CCeEEEEECCHHHHHHHHHHhccC-C-CEEEEECchhcCCccccCCCEEEE
Confidence 344689999999997 77676532 579999999999999999998653 2 389999999986432235999998
Q ss_pred eCCCcccHHHHH-Hhcc--CCCceEEEEeCCC
Q 027409 120 DCTSKDFARVLR-FARF--SNKGAVLAFKNAF 148 (223)
Q Consensus 120 Da~K~~Y~~~f~-~~~~--l~~GgvIV~DNvl 148 (223)
+--=....+.+. .+.. +.++|+++.-.-.
T Consensus 84 n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~ 115 (169)
T smart00650 84 NLPYNISTPILFKLLEEPPAFRDAVLMVQKEV 115 (169)
T ss_pred CCCcccHHHHHHHHHhcCCCcceEEEEEEHHH
Confidence 863222345554 3322 3578888776643
No 107
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.71 E-value=8.7e-08 Score=83.07 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH--hcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI--AARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~--A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
+..|.-.-.+..|+--.+|+.|+|+|++.|= |++|+|. +.....|+|++||+|.... .++.++.- ... |++
T Consensus 15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GG--Sli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~h-p~~~rI~~ 89 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELKPDLIIETGIAHGG--SLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESH-PMSPRITF 89 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--SEEEEE--TTSH--HHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG-----TTEEE
T ss_pred hcCHHHHHHHHHHHHHhCCCeEEEEecCCCc--hHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhc-cccCceEE
Confidence 5678888889999999999999999999984 8888873 3345679999999975532 22333332 222 999
Q ss_pred EecchH--HHhcCC------CCccEEEEeCC--CcccHHHHHHhcc-CCCceEEEEeCCC
Q 027409 100 IVRQAE--EVMGEL------KGVDFLVVDCT--SKDFARVLRFARF-SNKGAVLAFKNAF 148 (223)
Q Consensus 100 i~GdA~--evL~~L------~~fDfVFIDa~--K~~Y~~~f~~~~~-l~~GgvIV~DNvl 148 (223)
++||.. +++.++ ....+|+.|++ .++-..-|+++.+ +.+|+.+|+-+..
T Consensus 90 i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred EECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 999985 355443 24679999997 5666777777755 5999998877654
No 108
>PRK06922 hypothetical protein; Provisional
Probab=98.71 E-value=1.3e-07 Score=93.74 Aligned_cols=114 Identities=17% Similarity=0.087 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
..+...+....+..+|||||||+|. .+..+|.. .++++++.+|+++.+++.|+++.... +..++++.||+.+ ++
T Consensus 407 ~~~k~~i~d~~~g~rVLDIGCGTG~--ls~~LA~~--~P~~kVtGIDIS~~MLe~Ararl~~~-g~~ie~I~gDa~d-Lp 480 (677)
T PRK06922 407 ADDKRIILDYIKGDTIVDVGAGGGV--MLDMIEEE--TEDKRIYGIDISENVIDTLKKKKQNE-GRSWNVIKGDAIN-LS 480 (677)
T ss_pred HHHHHHHhhhcCCCEEEEeCCCCCH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhc-CCCeEEEEcchHh-Cc
Confidence 4455666777788999999999997 55566543 35789999999999999999998776 7668999999987 44
Q ss_pred C-C--CCccEEEEeC----------------CCcccHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 110 E-L--KGVDFLVVDC----------------TSKDFARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 110 ~-L--~~fDfVFIDa----------------~K~~Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
. + +.||+|+.-. +.+...+++..+ +.|+|||.++. |.++.
T Consensus 481 ~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 481 SSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred cccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 3 3 3799998642 123445667644 67788877766 55554
No 109
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.70 E-value=3.2e-07 Score=84.86 Aligned_cols=112 Identities=16% Similarity=0.063 Sum_probs=82.3
Q ss_pred CCcHHHHH-HHHHHHHhcC--CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 24 IKESGVAE-LLSAMAAGWN--AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 24 ii~p~~g~-fL~~L~~~~~--ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
++.+.+.+ ++.......+ +.+|||++||+|. .+++|+..+ .+|+.+|.+++.++.|++|++.. |+. +++
T Consensus 177 Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~--~sl~la~~~----~~v~~vE~~~~av~~a~~n~~~~-~~~~v~~ 249 (353)
T TIGR02143 177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGN--FSLALAQNF----RRVLATEIAKPSVNAAQYNIAAN-NIDNVQI 249 (353)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccH--HHHHHHHhC----CEEEEEECCHHHHHHHHHHHHHc-CCCcEEE
Confidence 34455443 3445445443 4579999999998 777776542 48999999999999999999998 987 999
Q ss_pred EecchHHHhcCC---------C-------CccEEEEeCC-CcccHHHHHHhccCCCceEEEE
Q 027409 100 IVRQAEEVMGEL---------K-------GVDFLVVDCT-SKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 100 i~GdA~evL~~L---------~-------~fDfVFIDa~-K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
+.||+.+.++.. . .||+||+|-- ++...+.++.+.. ++++|.+
T Consensus 250 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~--~~~ivYv 309 (353)
T TIGR02143 250 IRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA--YERILYI 309 (353)
T ss_pred EEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc--CCcEEEE
Confidence 999999987641 1 3899999985 4446777776633 4555543
No 110
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.70 E-value=2.3e-07 Score=85.98 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCcHHHHH-HHHHHHHhcC--CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 24 IKESGVAE-LLSAMAAGWN--AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 24 ii~p~~g~-fL~~L~~~~~--ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
++.+++.+ ++..+....+ ..++||++||+|. .+++++..+ .+|+.+|.+++.++.|++|.+.. |+. +++
T Consensus 186 Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~--~sl~la~~~----~~v~~vE~~~~ai~~a~~N~~~~-~~~~v~~ 258 (362)
T PRK05031 186 QPNAAVNEKMLEWALDATKGSKGDLLELYCGNGN--FTLALARNF----RRVLATEISKPSVAAAQYNIAAN-GIDNVQI 258 (362)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccH--HHHHHHhhC----CEEEEEECCHHHHHHHHHHHHHh-CCCcEEE
Confidence 44555444 4444444443 2579999999997 777776542 48999999999999999999998 997 999
Q ss_pred EecchHHHhcCC---------------C-CccEEEEeCC-CcccHHHHHHhc
Q 027409 100 IVRQAEEVMGEL---------------K-GVDFLVVDCT-SKDFARVLRFAR 134 (223)
Q Consensus 100 i~GdA~evL~~L---------------~-~fDfVFIDa~-K~~Y~~~f~~~~ 134 (223)
+.|||.+.|+.+ . .||+||+|-- ++.+.+.++.+.
T Consensus 259 ~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~ 310 (362)
T PRK05031 259 IRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQ 310 (362)
T ss_pred EECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 999999987643 1 4899999985 444667777663
No 111
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.70 E-value=1.8e-07 Score=87.48 Aligned_cols=110 Identities=9% Similarity=0.031 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 27 SGVAELLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 27 p~~g~fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
..+.+-+..+++. ....+|||||||.|. .++.+|.. .+++|+.+|+++++++.|+++.+ ++.+++..+|
T Consensus 150 ~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~--~a~~la~~---~g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D 221 (383)
T PRK11705 150 EAQEAKLDLICRKLQLKPGMRVLDIGCGWGG--LARYAAEH---YGVSVVGVTISAEQQKLAQERCA---GLPVEIRLQD 221 (383)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHH---CCCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECc
Confidence 3344455555444 345799999999997 66666532 36799999999999999999874 4458888999
Q ss_pred hHHHhcCCCCccEEEEe----C-CCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 104 AEEVMGELKGVDFLVVD----C-TSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 104 A~evL~~L~~fDfVFID----a-~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+.+. + +.||.|+.= . ...+|..+|+.+ +.|+|||.++.-.+
T Consensus 222 ~~~l-~--~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 222 YRDL-N--GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hhhc-C--CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8664 2 479999732 1 346678899866 67799999988654
No 112
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.68 E-value=1.2e-07 Score=84.99 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHH---HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 26 ESGVAELLSAMA---AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 26 ~p~~g~fL~~L~---~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
+..+.+-+..++ .+..=.+|||||||-|- .++++|.. .+++|++|.++++..+.|++.++++ |++ |+++
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~--~~~~~a~~---~g~~v~gitlS~~Q~~~a~~~~~~~-gl~~~v~v~ 117 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGG--LAIYAAER---YGCHVTGITLSEEQAEYARERIREA-GLEDRVEVR 117 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSH--HHHHHHHH---H--EEEEEES-HHHHHHHHHHHHCS-TSSSTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHH---cCcEEEEEECCHHHHHHHHHHHHhc-CCCCceEEE
Confidence 334444444444 44566789999999985 77777643 2789999999999999999999999 998 9999
Q ss_pred ecchHHHhcCCCCccEEE-EeC----CCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 101 VRQAEEVMGELKGVDFLV-VDC----TSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVF-IDa----~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
.+|..+. +. +||-|+ |.+ .+.+|+.||+.+ +.|+|||.++..-+..
T Consensus 118 ~~D~~~~-~~--~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 118 LQDYRDL-PG--KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp ES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred Eeecccc-CC--CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9998763 32 799754 443 357899999977 6789999998876543
No 113
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.67 E-value=1.3e-07 Score=83.68 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=92.6
Q ss_pred CCcHHHHHHHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
.+.|-.-.+++--++. ..-++||+||||.|- .+.+||.. |..||.||.+++.++.|+.+-.+. |+.|++.
T Consensus 39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~--Lse~mAr~----Ga~VtgiD~se~~I~~Ak~ha~e~-gv~i~y~ 111 (243)
T COG2227 39 KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGI--LSEPLARL----GASVTGIDASEKPIEVAKLHALES-GVNIDYR 111 (243)
T ss_pred eeccchhhhhhhhhhcccCCCCCeEEEecCCccH--hhHHHHHC----CCeeEEecCChHHHHHHHHhhhhc-cccccch
Confidence 4555555666666665 678999999999996 77788742 689999999999999999999999 9999999
Q ss_pred ecchHHHhcCCCCccEEEEeCCCcccH---HHHHHh-ccCCCceEEEEeCC
Q 027409 101 VRQAEEVMGELKGVDFLVVDCTSKDFA---RVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~K~~Y~---~~f~~~-~~l~~GgvIV~DNv 147 (223)
...+.+....-++||+|..==--++|+ .++..| ++++|||+++.--+
T Consensus 112 ~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 112 QATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred hhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 999988776546899999865555552 344544 67799999987665
No 114
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.66 E-value=1.9e-07 Score=82.62 Aligned_cols=94 Identities=12% Similarity=0.025 Sum_probs=66.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVF 118 (223)
+..+|||||||+|+ .+..++...... +..++.+|+++++++.|++.+.. ++++.+|+.+ ++- -+.||+|+
T Consensus 85 ~~~~vLDiGcG~G~--~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~-----~~~~~~d~~~-lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGY--YTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQ-----VTFCVASSHR-LPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCH--HHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCC-----CeEEEeeccc-CCCcCCceeEEE
Confidence 45789999999998 676776544332 24899999999999999865322 6888999876 342 24799998
Q ss_pred EeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 119 VDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 119 IDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
.--.+..+. +..+.|+|||.++.-
T Consensus 157 ~~~~~~~~~---e~~rvLkpgG~li~~ 180 (272)
T PRK11088 157 RIYAPCKAE---ELARVVKPGGIVITV 180 (272)
T ss_pred EecCCCCHH---HHHhhccCCCEEEEE
Confidence 644433322 234677899988863
No 115
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.65 E-value=3.7e-07 Score=77.81 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=70.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+.++|||||||+|. .+.+++. . +.+|+.+|+++++++.|++++... +.. ++++.+|+.+. + +.||+
T Consensus 53 ~~~~~~vLDiGcG~G~--~~~~la~--~--~~~v~gvD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~~-~--~~fD~ 122 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGL--LSIELAK--R--GAIVKAVDISEQMVQMARNRAQGR-DVAGNVEFEVNDLLSL-C--GEFDI 122 (219)
T ss_pred CCCCCEEEEEeCCCCH--HHHHHHH--C--CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEECChhhC-C--CCcCE
Confidence 4568999999999998 6667653 2 468999999999999999999887 763 99999998764 3 67999
Q ss_pred EEE-eCC----CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 117 LVV-DCT----SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 117 VFI-Da~----K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
|+. +.- ..+-...+..+ +++++|+++.+.+
T Consensus 123 ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 123 VVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred EEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 875 321 11112334433 4456666666543
No 116
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.63 E-value=4.3e-07 Score=81.96 Aligned_cols=103 Identities=16% Similarity=-0.056 Sum_probs=74.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCceEEEEecchHHHhcCCC-----Cc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWVSEVIVRQAEEVMGELK-----GV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~I~li~GdA~evL~~L~-----~f 114 (223)
.+.+|||+|||+|. -|..|+.+.. .+.+++.||+++++++.|++.+... -++.|+.+.||..+.++-+. ..
T Consensus 63 ~~~~iLELGcGtG~--~t~~Ll~~l~-~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 63 AGCELVELGSGSSR--KTRLLLDALR-QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCeEEecCCCcch--hHHHHHHhhc-cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCe
Confidence 45899999999998 7777776543 2578999999999999999998875 13448889999876543332 34
Q ss_pred cEEEEeCCCcc-----cHHHHHHh-ccCCCceEEEEeC
Q 027409 115 DFLVVDCTSKD-----FARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~-----Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.++|.+..-.+ -..+|..+ ..|+|||.++.+-
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 56777764333 34567655 5679999887544
No 117
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.63 E-value=4.1e-07 Score=87.41 Aligned_cols=118 Identities=9% Similarity=0.045 Sum_probs=88.0
Q ss_pred CcHHHHHHHHHHH--HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEe
Q 027409 25 KESGVAELLSAMA--AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIV 101 (223)
Q Consensus 25 i~p~~g~fL~~L~--~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~ 101 (223)
|+.....+...++ ......+||++.+|-|- -|+.+|. .+.+.|.|++.|+++.+++..++|++++ |+. |.+..
T Consensus 95 vQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGg--KTt~la~-~l~~~g~lvA~D~~~~R~~~L~~nl~r~-G~~nv~v~~ 170 (470)
T PRK11933 95 IQEASSMLPVAALFADDNAPQRVLDMAAAPGS--KTTQIAA-LMNNQGAIVANEYSASRVKVLHANISRC-GVSNVALTH 170 (470)
T ss_pred EECHHHHHHHHHhccCCCCCCEEEEeCCCccH--HHHHHHH-HcCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEe
Confidence 3444555555444 44566899999999985 6667764 4556789999999999999999999999 999 99999
Q ss_pred cchHHHhcCC-CCccEEEEeCCCccc-------------------------HHHHH-HhccCCCceEEEEeC
Q 027409 102 RQAEEVMGEL-KGVDFLVVDCTSKDF-------------------------ARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL~~L-~~fDfVFIDa~K~~Y-------------------------~~~f~-~~~~l~~GgvIV~DN 146 (223)
.|+.+.-+.+ ..||.|++||--+.- .+.++ ++..++|||+||.--
T Consensus 171 ~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 171 FDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 9998754444 379999999864311 33444 346779999997654
No 118
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.62 E-value=1.6e-07 Score=88.34 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=83.9
Q ss_pred HHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhc
Q 027409 34 SAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMG 109 (223)
Q Consensus 34 ~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~ 109 (223)
.++....+=|+||-+=|.||- .|+..|.+ |+ .+|++|.+...++.|++|++-. |+. ++++.|||.+.|.
T Consensus 210 ~~l~~~~~GkrvLNlFsYTGg--fSv~Aa~g----GA~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~~Dvf~~l~ 282 (393)
T COG1092 210 RALGELAAGKRVLNLFSYTGG--FSVHAALG----GASEVTSVDLSKRALEWARENAELN-GLDGDRHRFIVGDVFKWLR 282 (393)
T ss_pred HHHhhhccCCeEEEecccCcH--HHHHHHhc----CCCceEEEeccHHHHHHHHHHHHhc-CCCccceeeehhhHHHHHH
Confidence 345555567999999999985 66665433 45 8999999999999999999999 886 9999999999999
Q ss_pred CC----CCccEEEEeCC------------CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 110 EL----KGVDFLVVDCT------------SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 110 ~L----~~fDfVFIDa~------------K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.+ ..||+|++|-- ...|.+....+ ++|+|||++++=+--
T Consensus 283 ~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 283 KAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 87 27999999932 23455555533 677888888776643
No 119
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.61 E-value=5.6e-07 Score=82.27 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=73.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc--eEEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW--VSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~I~li~GdA~evL~~L~~fDfV 117 (223)
...++|||||||.|| .++.|+.. . ..+|+.||.++.++..++..-+.. +. .|+++.+|+.+. +..+.||+|
T Consensus 121 l~g~~VLDIGCG~G~--~~~~la~~--g-~~~V~GiD~S~~~l~q~~a~~~~~-~~~~~i~~~~~d~e~l-p~~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCGNGY--HMWRMLGA--G-AKLVVGIDPSQLFLCQFEAVRKLL-GNDQRAHLLPLGIEQL-PALKAFDTV 193 (322)
T ss_pred CCCCEEEEeccCCcH--HHHHHHHc--C-CCEEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEeCCHHHC-CCcCCcCEE
Confidence 456899999999998 77677643 1 247999999998876554432222 32 399999998764 444579999
Q ss_pred EEeCC---CcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 118 VVDCT---SKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 118 FIDa~---K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
|.=+. ......+|..+ +.|+|||.+|.+.+...+
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 97432 23346677644 677999999998765444
No 120
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.59 E-value=3.5e-07 Score=82.88 Aligned_cols=88 Identities=20% Similarity=0.114 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~ 101 (223)
.++|.+.+.+-..+......+|||||||.|. .|..++.. .++++.+|+|+++++.++++++.. +. . ++++.
T Consensus 19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~--LT~~Ll~~----~~~V~avEiD~~li~~l~~~~~~~-~~~~~v~ii~ 91 (294)
T PTZ00338 19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGN--LTEKLLQL----AKKVIAIEIDPRMVAELKKRFQNS-PLASKLEVIE 91 (294)
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEecCchHH--HHHHHHHh----CCcEEEEECCHHHHHHHHHHHHhc-CCCCcEEEEE
Confidence 5778777777666666677899999999998 67676643 468999999999999999999987 74 3 99999
Q ss_pred cchHHHhcCCCCccEEEEe
Q 027409 102 RQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFID 120 (223)
||+++. .+..||.|+.+
T Consensus 92 ~Dal~~--~~~~~d~VvaN 108 (294)
T PTZ00338 92 GDALKT--EFPYFDVCVAN 108 (294)
T ss_pred CCHhhh--cccccCEEEec
Confidence 999984 24578988854
No 121
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.56 E-value=7.2e-07 Score=83.59 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=79.4
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEEEEeC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
.+|||++||+|. .+|.+|.... ..+|+.+|.|++.++.+++|++.. |+. ++++.+||.+.|..-+.||+|++|.
T Consensus 59 ~~vLDl~aGsG~--~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N-~~~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 59 ESVLDALSASGI--RGIRYALETG--VEKVTLNDINPDAVELIKKNLELN-GLENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CEEEECCCcccH--HHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHh-CCCceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 489999999998 7877765422 248999999999999999999998 888 8999999999886434699999997
Q ss_pred CCcccHHHHHH-hccCCCceEEEEe
Q 027409 122 TSKDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 122 ~K~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
- +.=.++++. +..+++||+|-+-
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 3 444677775 6777889998774
No 122
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.56 E-value=4e-07 Score=77.15 Aligned_cols=110 Identities=13% Similarity=0.240 Sum_probs=81.8
Q ss_pred HHHHHHHHHh-cCCCeEEEEccCcchHHHHH-HHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecch
Q 027409 30 AELLSAMAAG-WNAKLIVEAWTHGGPITTSI-GLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQA 104 (223)
Q Consensus 30 g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl-~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA 104 (223)
..+.++|-.. ..-.++|++=+|+|. .++ +|. .| .+++.+|.|++.+...++|++.. |.+ ++++.+|+
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGa--lGlEALS-----RGA~~v~fVE~~~~a~~~i~~N~~~l-~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGA--LGLEALS-----RGAKSVVFVEKNRKAIKIIKKNLEKL-GLEDKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSH--HHHHHHH-----TT-SEEEEEES-HHHHHHHHHHHHHH-T-GGGEEEEESSH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCc--cHHHHHh-----cCCCeEEEEECCHHHHHHHHHHHHHh-CCCcceeeeccCH
Confidence 5677777777 888999999888885 444 222 23 48999999999999999999999 887 99999999
Q ss_pred HHHhcCC----CCccEEEEeC--CCcc-cHHHHHHh---ccCCCceEEEEeCC
Q 027409 105 EEVMGEL----KGVDFLVVDC--TSKD-FARVLRFA---RFSNKGAVLAFKNA 147 (223)
Q Consensus 105 ~evL~~L----~~fDfVFIDa--~K~~-Y~~~f~~~---~~l~~GgvIV~DNv 147 (223)
...|.++ .+||+||+|- .+.. |.+.++.+ ..++++|+||+..-
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 9988765 4899999996 3444 47788765 34599999998653
No 123
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.56 E-value=2.8e-08 Score=74.11 Aligned_cols=92 Identities=16% Similarity=0.095 Sum_probs=56.9
Q ss_pred EEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCC
Q 027409 46 VEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCT 122 (223)
Q Consensus 46 LEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~ 122 (223)
||||||+|. .+.+++... ++++++.+|+++.+++.|++.+.+. +.. ++.+..+..+..... +.||+|+.=.-
T Consensus 1 LdiGcG~G~--~~~~l~~~~--~~~~~~~~D~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGR--LLRALLEEL--PDARYTGVDISPSMLERARERLAEL-GNDNFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS---TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHC-T---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChH--HHHHHHHhC--CCCEEEEEECCHHHHHHHHHHhhhc-CCcceeEEEeecCChhhcccccccceehhhhh
Confidence 799999997 565665443 5789999999999999999999998 655 555666665555443 48999987642
Q ss_pred C---cccHHHHHHh-ccCCCceEE
Q 027409 123 S---KDFARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 123 K---~~Y~~~f~~~-~~l~~GgvI 142 (223)
= ++-..+++.+ +.++|||++
T Consensus 76 l~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred HhhhhhHHHHHHHHHHHcCCCCCC
Confidence 2 3335566655 567999986
No 124
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.55 E-value=3.2e-07 Score=76.94 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=56.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC--C-ccEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK--G-VDFL 117 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~--~-fDfV 117 (223)
+.|+++-||.|- -+|.+|.. ..+|++||+||++++.|+.|.+-+ |++ |+++.||+.+.++++. . ||+|
T Consensus 1 ~~vlD~fcG~GG--NtIqFA~~----~~~Viaidid~~~~~~a~hNa~vY-Gv~~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGG--NTIQFART----FDRVIAIDIDPERLECAKHNAEVY-GVADNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSH--HHHHHHHT----T-EEEEEES-HHHHHHHHHHHHHT-T-GGGEEEEES-HHHHGGGB------SEE
T ss_pred CEEEEeccCcCH--HHHHHHHh----CCeEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEeCCHHHHHhhccccccccEE
Confidence 468999998885 88899864 358999999999999999999999 987 9999999999998873 3 8999
Q ss_pred EEeC
Q 027409 118 VVDC 121 (223)
Q Consensus 118 FIDa 121 (223)
|+|-
T Consensus 74 FlSP 77 (163)
T PF09445_consen 74 FLSP 77 (163)
T ss_dssp EE--
T ss_pred EECC
Confidence 9996
No 125
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=3.5e-07 Score=82.21 Aligned_cols=89 Identities=19% Similarity=0.087 Sum_probs=69.0
Q ss_pred CCcHHHHHHHHHHH--HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMA--AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~--~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
+-.|++..++..+. ....+++|||||||+|. -++++|.. .+..+|+.+|+|++..+.|++|.++. |+. +.++
T Consensus 91 iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~--iai~la~~--~~~~~V~a~Dis~~Al~~A~~Na~~~-~l~~~~~~ 165 (280)
T COG2890 91 IPRPDTELLVEAALALLLQLDKRILDLGTGSGA--IAIALAKE--GPDAEVIAVDISPDALALARENAERN-GLVRVLVV 165 (280)
T ss_pred ecCCchHHHHHHHHHhhhhcCCcEEEecCChHH--HHHHHHhh--CcCCeEEEEECCHHHHHHHHHHHHHc-CCccEEEE
Confidence 55788888888754 22233379999999997 56666543 34579999999999999999999999 965 6777
Q ss_pred ecchHHHhcCCCCccEEEE
Q 027409 101 VRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFI 119 (223)
.+|..+-++. +||+|+-
T Consensus 166 ~~dlf~~~~~--~fDlIVs 182 (280)
T COG2890 166 QSDLFEPLRG--KFDLIVS 182 (280)
T ss_pred eeecccccCC--ceeEEEe
Confidence 7777776664 7888874
No 126
>PRK06202 hypothetical protein; Provisional
Probab=98.54 E-value=1.1e-06 Score=75.65 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcC--CCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAAR--HTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~--~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL 108 (223)
+.+..++...++.+|||||||+|. .+..|+.... .++.+|+.+|+++++++.|++..... ++. ++.+++.+ +
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~--~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~--~~~~~~~~-l 123 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGD--LAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-GVT--FRQAVSDE-L 123 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCH--HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-CCe--EEEEeccc-c
Confidence 344444444678899999999998 6666664332 33569999999999999999987665 554 44444322 2
Q ss_pred cCC-CCccEEEEeCCCcc-----cHHHHHHh-ccCCCceEEEEeCCC
Q 027409 109 GEL-KGVDFLVVDCTSKD-----FARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~K~~-----Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
+.- +.||+|+.-..=.+ ...++..+ +.++ | .+++.++.
T Consensus 124 ~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~-~~~i~dl~ 168 (232)
T PRK06202 124 VAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-R-LVLHNDLI 168 (232)
T ss_pred cccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-e-eEEEeccc
Confidence 222 47999998743222 23456544 4445 4 44444443
No 127
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.52 E-value=4.8e-07 Score=79.83 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=69.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
++++.+.+.+...+...+.++|||||||.|+ .|+.++.. .++++.+|+|+++++.++++++.. + .++++.||
T Consensus 12 l~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~--lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~~-~-~v~ii~~D 83 (258)
T PRK14896 12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA--LTDELAKR----AKKVYAIELDPRLAEFLRDDEIAA-G-NVEIIEGD 83 (258)
T ss_pred cCCHHHHHHHHHhcCCCCcCeEEEEeCccCH--HHHHHHHh----CCEEEEEECCHHHHHHHHHHhccC-C-CEEEEEec
Confidence 6788888888888777788999999999998 77777643 468999999999999999988653 2 28999999
Q ss_pred hHHHhcCCCCccEEEE
Q 027409 104 AEEVMGELKGVDFLVV 119 (223)
Q Consensus 104 A~evL~~L~~fDfVFI 119 (223)
+++. + +..||.|+-
T Consensus 84 ~~~~-~-~~~~d~Vv~ 97 (258)
T PRK14896 84 ALKV-D-LPEFNKVVS 97 (258)
T ss_pred cccC-C-chhceEEEE
Confidence 9874 2 345787764
No 128
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.51 E-value=7.2e-07 Score=84.53 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH-
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV- 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev- 107 (223)
..++..+ ...+.++|||||||+|. .+..|+.. .++++.||.++++++.+++.-. ... ++++.+|+.+.
T Consensus 27 ~~il~~l-~~~~~~~vLDlGcG~G~--~~~~la~~----~~~v~giD~s~~~l~~a~~~~~---~~~~i~~~~~d~~~~~ 96 (475)
T PLN02336 27 PEILSLL-PPYEGKSVLELGAGIGR--FTGELAKK----AGQVIALDFIESVIKKNESING---HYKNVKFMCADVTSPD 96 (475)
T ss_pred hHHHhhc-CccCCCEEEEeCCCcCH--HHHHHHhh----CCEEEEEeCCHHHHHHHHHHhc---cCCceEEEEecccccc
Confidence 3344433 33456799999999998 77777642 4689999999999988765221 123 89999999643
Q ss_pred hcCC-CCccEEEEeCCCcc-----cHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 108 MGEL-KGVDFLVVDCTSKD-----FARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 108 L~~L-~~fDfVFIDa~K~~-----Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
++-- +.||+|+....-.. ..++++.+ +.++|||+++. ||.+.
T Consensus 97 ~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 97 LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 3322 47999999763221 24566544 66789998776 55553
No 129
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.50 E-value=5e-07 Score=80.29 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=71.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcC-C----CCcEEEEEeCCchHHHHHHHHHH------------------hhcC---
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAAR-H----TCARHVCIVPDERSRLAYVKAMY------------------DVVG--- 94 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~-~----~~g~i~TIE~d~e~~~~Ar~~~~------------------~a~G--- 94 (223)
++-+|+++|||+|--++||++..+.. + .+.+|+.+|+|+++++.|++... +.-|
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996555666544321 1 25799999999999999998531 0000
Q ss_pred ----ce--EEEEecchHHHhcCCCCccEEEEeCCCccc------HHHHHHh-ccCCCceEEEEeC
Q 027409 95 ----WV--SEVIVRQAEEVMGELKGVDFLVVDCTSKDF------ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 95 ----~~--I~li~GdA~evL~~L~~fDfVFIDa~K~~Y------~~~f~~~-~~l~~GgvIV~DN 146 (223)
+. |+|..+|..+.-...++||+||.- +--.| .+.+..+ +.|+|||.++.-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~cr-nvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCR-NVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEec-hhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 11 899999998743334589999973 12122 3455533 6779999998744
No 130
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.48 E-value=6e-07 Score=81.60 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHhcCC-CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 26 ESGVAELLSAMAAGWNA-KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~a-k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
.|.|.--|.+|-+...+ ++||+||||+|. .+|+-++ .. -.+|+.+|+||...+.|++|.+.- |++ +++.
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGI--LaiaA~k--lG-A~~v~a~DiDp~Av~~a~~N~~~N-~~~~~~~v~-- 216 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGI--LAIAAAK--LG-AKKVVAIDIDPLAVEAARENAELN-GVEDRIEVS-- 216 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSH--HHHHHHH--TT-BSEEEEEESSCHHHHHHHHHHHHT-T-TTCEEES--
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHH--HHHHHHH--cC-CCeEEEecCCHHHHHHHHHHHHHc-CCCeeEEEE--
Confidence 45567777888777654 799999999997 6655443 21 248999999999999999999998 887 5543
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
...+... .+||+|+-.--.+--..+.+.+ ..++|||.+|.--++...
T Consensus 217 ~~~~~~~--~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~ 264 (295)
T PF06325_consen 217 LSEDLVE--GKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQ 264 (295)
T ss_dssp CTSCTCC--S-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG
T ss_pred Eeccccc--ccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHH
Confidence 2122211 5899999777665556666544 456999999987776544
No 131
>PTZ00146 fibrillarin; Provisional
Probab=98.47 E-value=1.3e-06 Score=79.35 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=66.9
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH--hcC-CCCccEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV--MGE-LKGVDFLV 118 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev--L~~-L~~fDfVF 118 (223)
-.+||++||++|+ .+..+|... .+.|+|+++|.++++.+...+..++. ..|.++.+||..- +.. ++.||+||
T Consensus 133 G~~VLDLGaG~G~--~t~~lAdiV-G~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 133 GSKVLYLGAASGT--TVSHVSDLV-GPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCEEEEeCCcCCH--HHHHHHHHh-CCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence 3589999999998 777777543 44689999999976543333322211 1278889998642 222 24799999
Q ss_pred EeCC-CcccHHHHH-HhccCCCceEEEEe
Q 027409 119 VDCT-SKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 119 IDa~-K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+|.. ..++..+.. +.+.|+|||.+++.
T Consensus 208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 208 ADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 9986 334444443 34678999998883
No 132
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.46 E-value=1.4e-06 Score=75.33 Aligned_cols=96 Identities=13% Similarity=-0.015 Sum_probs=68.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC----------------ceEEEEecch
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG----------------WVSEVIVRQA 104 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G----------------~~I~li~GdA 104 (223)
...+||++|||.|+ -++|||. .|-.||.+|+++..++.|.+ ++ | ..|+++.||.
T Consensus 34 ~~~rvLd~GCG~G~--da~~LA~----~G~~V~gvD~S~~Ai~~~~~---~~-~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 34 AGARVFVPLCGKSL--DLAWLAE----QGHRVLGVELSEIAVEQFFA---EN-GLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred CCCeEEEeCCCchh--HHHHHHh----CCCeEEEEeCCHHHHHHHHH---Hc-CCCcceeccccceeeecCceEEEEccC
Confidence 44699999999998 8889873 25689999999998887532 22 2 2389999999
Q ss_pred HHHhcC-CCCccEEEEe-----CCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 105 EEVMGE-LKGVDFLVVD-----CTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 105 ~evL~~-L~~fDfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.+.-.. .+.||+||=- -.++.-.+|++.+ +.|+|||+++.--
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 885443 2468887522 2345567788866 6779999655443
No 133
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.45 E-value=2.5e-06 Score=79.85 Aligned_cols=108 Identities=13% Similarity=0.026 Sum_probs=83.0
Q ss_pred HHHHHHhcCC---CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHh
Q 027409 33 LSAMAAGWNA---KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVM 108 (223)
Q Consensus 33 L~~L~~~~~a---k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL 108 (223)
++.+....+. -+|||.-||+|. -+|-.+.-. +.-.+|+.+|+|++.++.+++|.+.- ++. ++++.+||...|
T Consensus 33 ~~~~~~~~~~~~~~~vLD~faGsG~--rgir~a~e~-~ga~~Vv~nD~n~~Av~~i~~N~~~N-~~~~~~v~~~Da~~~l 108 (374)
T TIGR00308 33 IQAFDNLYGKECYINIADALSASGI--RAIRYAHEI-EGVREVFANDINPKAVESIKNNVEYN-SVENIEVPNEDAANVL 108 (374)
T ss_pred HHHHHHhhCCcCCCEEEECCCchhH--HHHHHHhhC-CCCCEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEchhHHHHH
Confidence 3333444444 389999999997 777665321 11147999999999999999999988 887 999999999999
Q ss_pred cCC-CCccEEEEeCCCcccHHHHHH-hccCCCceEEEEe
Q 027409 109 GEL-KGVDFLVVDCTSKDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
... ..||+|++|. -+...+|++. +..+++||+|.+-
T Consensus 109 ~~~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 109 RYRNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHhCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 876 4799999999 5555688874 4677888877654
No 134
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=2.1e-06 Score=77.69 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHHHhc------CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-
Q 027409 24 IKESGVAELLSAMAAGW------NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV- 96 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~------~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~- 96 (223)
|--||+.++..+.+... +...|||+|||.|. .++.|+.. .+ .++++.||.++..+..|++|.+++ +++
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGa--Islsll~~-L~-~~~v~AiD~S~~Ai~La~eN~qr~-~l~g 199 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGA--ISLSLLHG-LP-QCTVTAIDVSKAAIKLAKENAQRL-KLSG 199 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccH--HHHHHHhc-CC-CceEEEEeccHHHHHHHHHHHHHH-hhcC
Confidence 56888888887766543 34479999999997 45555533 33 689999999999999999999999 888
Q ss_pred -EEEE----ecchHHHhcCC-CCccEEE--------------------------EeCCCcccHHHHH---H-hccCCCce
Q 027409 97 -SEVI----VRQAEEVMGEL-KGVDFLV--------------------------VDCTSKDFARVLR---F-ARFSNKGA 140 (223)
Q Consensus 97 -I~li----~GdA~evL~~L-~~fDfVF--------------------------IDa~K~~Y~~~f~---~-~~~l~~Gg 140 (223)
|+++ ++|+.+-.+.+ +++|++. +|+.-+.|..++. . .+.+++||
T Consensus 200 ~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg 279 (328)
T KOG2904|consen 200 RIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG 279 (328)
T ss_pred ceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence 8877 89998877644 3566554 3455555544443 2 26788899
Q ss_pred EEEEeCCC
Q 027409 141 VLAFKNAF 148 (223)
Q Consensus 141 vIV~DNvl 148 (223)
.+...=.-
T Consensus 280 ~~~le~~~ 287 (328)
T KOG2904|consen 280 FEQLELVE 287 (328)
T ss_pred eEEEEecc
Confidence 98887653
No 135
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.43 E-value=2e-06 Score=79.67 Aligned_cols=96 Identities=15% Similarity=0.051 Sum_probs=69.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVFI 119 (223)
...+|||||||+|. .++.++... ++++++.+|.++++++.|+++.... .++++.||+.+ ++-- +.||+|+.
T Consensus 113 ~~~~VLDLGcGtG~--~~l~La~~~--~~~~VtgVD~S~~mL~~A~~k~~~~---~i~~i~gD~e~-lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGF--TTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLK---ECKIIEGDAED-LPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHhhhcc---CCeEEeccHHh-CCCCCCceeEEEE
Confidence 45699999999997 666665432 3579999999999999999976432 27889999976 3322 47999998
Q ss_pred eCCC---cccHHHHHHh-ccCCCceEEEE
Q 027409 120 DCTS---KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K---~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
-..- .+-...|+.+ +.|+|||.++.
T Consensus 185 ~~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred cChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 5421 1234566644 67899998754
No 136
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.42 E-value=2.3e-07 Score=82.31 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=74.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHH-HHhh-cCceEEEEecchHHHhcCCC--Ccc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKA-MYDV-VGWVSEVIVRQAEEVMGELK--GVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~-~~~a-~G~~I~li~GdA~evL~~L~--~fD 115 (223)
+-.+||+-=||-|| .+|.-+ ..|+ +|+|+|.||.-++.|+-| |.+- +-..|+++.|||.|++++++ .||
T Consensus 134 ~G~rVLDtC~GLGY--tAi~a~----~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 134 RGERVLDTCTGLGY--TAIEAL----ERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cCCEeeeeccCccH--HHHHHH----HcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 44789999888888 665533 2366 899999999999999998 6653 11128999999999999994 699
Q ss_pred EEEEeC-----CCcccHH-HH-HHhccCCCceEEE
Q 027409 116 FLVVDC-----TSKDFAR-VL-RFARFSNKGAVLA 143 (223)
Q Consensus 116 fVFIDa-----~K~~Y~~-~f-~~~~~l~~GgvIV 143 (223)
+|.-|- +-+.|.+ |+ ++.+.|++||=+.
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 999993 2377754 44 4668898888764
No 137
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.42 E-value=3.9e-06 Score=76.87 Aligned_cols=119 Identities=10% Similarity=-0.066 Sum_probs=77.5
Q ss_pred CCcHHHHHHHH---HHHH--hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-
Q 027409 24 IKESGVAELLS---AMAA--GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V- 96 (223)
Q Consensus 24 ii~p~~g~fL~---~L~~--~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~- 96 (223)
.++++...-+. ++-+ ....++|||||||+|| .++.++. .. ...++.||.++.++..++..=+.. +. .
T Consensus 99 ~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~--~~~~~~~--~g-~~~v~GiDpS~~ml~q~~~~~~~~-~~~~~ 172 (314)
T TIGR00452 99 KIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGY--HMWRMLG--HG-AKSLVGIDPTVLFLCQFEAVRKLL-DNDKR 172 (314)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcH--HHHHHHH--cC-CCEEEEEcCCHHHHHHHHHHHHHh-ccCCC
Confidence 56777655554 2222 2455899999999998 6656543 21 247999999999887643322222 21 2
Q ss_pred EEEEecchHHHhcCCCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 97 SEVIVRQAEEVMGELKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 97 I~li~GdA~evL~~L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+.++.++..+ ++....||.||.=+-=. +...+|..+ +.|+|||.+|......
T Consensus 173 v~~~~~~ie~-lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 173 AILEPLGIEQ-LHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred eEEEECCHHH-CCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 7888888755 45455899999765332 234566644 6779999999876543
No 138
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.40 E-value=1.5e-06 Score=78.40 Aligned_cols=104 Identities=20% Similarity=0.114 Sum_probs=68.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHH-hhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMY-DVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~-~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.|++|+=||+| -+.-|+|+||... .++.++++||+|++..+.|++..+ .. |++ ++|+.+|+.++-.++..||.|
T Consensus 120 ~p~rVaFIGSG-PLPlT~i~la~~~-~~~~~v~~iD~d~~A~~~a~~lv~~~~-~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSG-PLPLTSIVLAKQH-GPGARVHNIDIDPEANELARRLVASDL-GLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp ---EEEEE----SS-HHHHHHH--H-TT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ccceEEEEcCC-CcchHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhcc-cccCCeEEEecchhccccccccCCEE
Confidence 46799999998 3456888887432 346789999999999999999999 66 776 999999999876678899999
Q ss_pred EEeCCCc----ccHHHHHHh-ccCCCceEEEEeCC
Q 027409 118 VVDCTSK----DFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 118 FIDa~K~----~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
|+-|--+ .=.+.|+.+ +.+++|++|+.=..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 9998665 888899866 56799999998754
No 139
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.38 E-value=1.4e-06 Score=79.03 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce---EEEEec
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVR 102 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~G 102 (223)
.+.-+++.. ..+-|+||.+=|.+|- .+++.|.+ |+ +++++|.+...++.|++|++-- |++ ++++.+
T Consensus 112 R~nR~~v~~---~~~gkrvLnlFsYTGg--fsv~Aa~g----GA~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~ 181 (286)
T PF10672_consen 112 RENRKWVRK---YAKGKRVLNLFSYTGG--FSVAAAAG----GAKEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQG 181 (286)
T ss_dssp HHHHHHHHH---HCTTCEEEEET-TTTH--HHHHHHHT----TESEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES
T ss_pred HhhHHHHHH---HcCCCceEEecCCCCH--HHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEec
Confidence 444444444 4556899999888884 55543321 33 6999999999999999999988 765 999999
Q ss_pred chHHHhcCC---CCccEEEEeCC---------CcccHHHHHH-hccCCCceEEE-EeC
Q 027409 103 QAEEVMGEL---KGVDFLVVDCT---------SKDFARVLRF-ARFSNKGAVLA-FKN 146 (223)
Q Consensus 103 dA~evL~~L---~~fDfVFIDa~---------K~~Y~~~f~~-~~~l~~GgvIV-~DN 146 (223)
|+.+.|.++ .+||+|++|-- ...|.+++.. +++++|||+++ +-|
T Consensus 182 Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 182 DVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 999988765 48999999942 2357777764 46678888755 555
No 140
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.4e-06 Score=73.72 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=74.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc-------Cce---EEEEecchHHHh
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV-------GWV---SEVIVRQAEEVM 108 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~-------G~~---I~li~GdA~evL 108 (223)
+..=-+.|+||+|+|| .|-++|+-...+++..+-||.-++..+.+++|+.+.. .++ ..|++||.++.-
T Consensus 80 L~pG~s~LdvGsGSGY--Lt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGY--LTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred hccCcceeecCCCccH--HHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 5566789999999999 6656664445666656999999999999999998761 122 788999999988
Q ss_pred cCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 109 GELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 109 ~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
++-.+||-|++=|+-.+-++ +++.-|++||=|+.
T Consensus 158 ~e~a~YDaIhvGAaa~~~pq--~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAASELPQ--ELLDQLKPGGRLLI 191 (237)
T ss_pred CccCCcceEEEccCccccHH--HHHHhhccCCeEEE
Confidence 87779999999987554432 22333444444443
No 141
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.37 E-value=2.3e-06 Score=74.83 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=73.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE-EEecchHHHhcCC--CCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE-VIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~-li~GdA~evL~~L--~~fD 115 (223)
..--.+||||||+|- -+-. .-..+..+||+||+||.+-+.|.+-+++. -.. ++ |+.+++.+ |++| ..||
T Consensus 75 ~~K~~vLEvgcGtG~---Nfkf--y~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~-l~~l~d~s~D 147 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGA---NFKF--YPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGEN-LPQLADGSYD 147 (252)
T ss_pred cCccceEEecccCCC---Cccc--ccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhc-CcccccCCee
Confidence 344457999999994 2211 11236789999999999999999999987 444 55 99998765 6777 3799
Q ss_pred EEE---EeCCCcccHHHHHHh-ccCCCceEEEE
Q 027409 116 FLV---VDCTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 116 fVF---IDa~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
-|. +=|.-++-.+.+.-+ ++|||||.|+.
T Consensus 148 tVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred eEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 874 447777778888765 67799999875
No 142
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.37 E-value=5e-06 Score=71.48 Aligned_cols=91 Identities=11% Similarity=-0.006 Sum_probs=63.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH--hc----CC-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV--MG----EL- 111 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev--L~----~L- 111 (223)
.+..+|||||||+|. .+..++.. ..+.|+|+.||+++. . ... |+++.||+.+. ++ .+
T Consensus 50 ~~~~~VLDlG~GtG~--~t~~l~~~-~~~~~~V~aVDi~~~-----------~-~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGG--WSQYAVTQ-IGDKGRVIACDILPM-----------D-PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCH--HHHHHHHH-cCCCceEEEEecccc-----------c-CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 456789999999997 66666643 345689999999981 1 223 79999998762 32 23
Q ss_pred -CCccEEEEeCCCc--------cc------HHHHHHh-ccCCCceEEEEe
Q 027409 112 -KGVDFLVVDCTSK--------DF------ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 112 -~~fDfVFIDa~K~--------~Y------~~~f~~~-~~l~~GgvIV~D 145 (223)
+.||+|+.|.... ++ ...++.+ +.|+|||.+++-
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3799999997531 11 2344433 677999999985
No 143
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.37 E-value=6.5e-06 Score=75.38 Aligned_cols=95 Identities=9% Similarity=-0.047 Sum_probs=67.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC-----ce-EEEEecchHHHhcCCCCc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG-----WV-SEVIVRQAEEVMGELKGV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G-----~~-I~li~GdA~evL~~L~~f 114 (223)
+..+|||||||+|. .++.|+. .+.+|+.+|+++++++.|+++++.. + .. +++..+|..+. . +.|
T Consensus 144 ~~~~VLDlGcGtG~--~a~~la~----~g~~V~gvD~S~~ml~~A~~~~~~~-~~~~~~~~~~~f~~~Dl~~l-~--~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGS--LAIPLAL----EGAIVSASDISAAMVAEAERRAKEA-LAALPPEVLPKFEANDLESL-S--GKY 213 (315)
T ss_pred CCCEEEEecCCCCH--HHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhc-ccccccccceEEEEcchhhc-C--CCc
Confidence 46799999999997 6777763 2569999999999999999998865 3 22 88999996442 2 479
Q ss_pred cEEEEeCCCccc-----HHHHHHhccCCCceEEEEe
Q 027409 115 DFLVVDCTSKDF-----ARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~~Y-----~~~f~~~~~l~~GgvIV~D 145 (223)
|+|+.=..-.+| ...+..+..+.+|+++|..
T Consensus 214 D~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 214 DTVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred CEEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEe
Confidence 988732111233 2344444445678888865
No 144
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.36 E-value=4.3e-06 Score=73.44 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=82.7
Q ss_pred HHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-eEEEEecchHHHhcCC-
Q 027409 34 SAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-VSEVIVRQAEEVMGEL- 111 (223)
Q Consensus 34 ~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~I~li~GdA~evL~~L- 111 (223)
+.+..-..+.-+||||||.|- +.+.+|. ..|+--.+.||+.......|.+.+.+. |+ .|.++.+||.++|..+
T Consensus 41 ~~~f~~~~~pi~lEIGfG~G~--~l~~~A~--~nP~~nfiGiEi~~~~v~~~l~k~~~~-~l~Nlri~~~DA~~~l~~~~ 115 (227)
T COG0220 41 SALFGNNNAPIVLEIGFGMGE--FLVEMAK--KNPEKNFLGIEIRVPGVAKALKKIKEL-GLKNLRLLCGDAVEVLDYLI 115 (227)
T ss_pred HHHhCCCCCcEEEEECCCCCH--HHHHHHH--HCCCCCEEEEEEehHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHhcC
Confidence 334444445789999999986 6667764 445557999999999999999999999 99 5999999999999887
Q ss_pred -C-C---ccEEEEeCC--Ccc------cHHHHHHh-ccCCCceEEE--EeC
Q 027409 112 -K-G---VDFLVVDCT--SKD------FARVLRFA-RFSNKGAVLA--FKN 146 (223)
Q Consensus 112 -~-~---fDfVFIDa~--K~~------Y~~~f~~~-~~l~~GgvIV--~DN 146 (223)
+ . ..+-|=|-| |.+ |+.+++.+ +.|++||.|- +||
T Consensus 116 ~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 116 PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 2 4 455555776 333 57888866 6789999874 455
No 145
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.34 E-value=3.6e-06 Score=73.04 Aligned_cols=96 Identities=8% Similarity=-0.027 Sum_probs=69.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH-H-HH----------hhcCceEEEEecchHHHh
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK-A-MY----------DVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~-~-~~----------~a~G~~I~li~GdA~evL 108 (223)
+..+||++|||.|. .++|||. .|-.||.+|+++..++.|.. + +. ...+..|++..+|..+.-
T Consensus 37 ~~~rvL~~gCG~G~--da~~LA~----~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCGKSL--DMLWLAE----QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCCChH--hHHHHHh----CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 34699999999998 8889873 36689999999998887632 1 10 110112899999999865
Q ss_pred cC-CCCccEEE-----EeCCCcccHHHHHHh-ccCCCceEE
Q 027409 109 GE-LKGVDFLV-----VDCTSKDFARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 109 ~~-L~~fDfVF-----IDa~K~~Y~~~f~~~-~~l~~GgvI 142 (223)
+. +..||+|| +=..++.-.+|+..+ .+|+|||++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~ 151 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRG 151 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeE
Confidence 54 35799988 444566678889866 677999753
No 146
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.34 E-value=3.2e-06 Score=70.62 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=63.3
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--H---h-c
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--V---M-G 109 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--v---L-~ 109 (223)
+....+-.+|||||||+|. .+..++.. ....++|+.+|+++++ .. ..++++.+|+.+ . + .
T Consensus 27 ~~~i~~g~~VLDiG~GtG~--~~~~l~~~-~~~~~~v~~vDis~~~---------~~--~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGG--WSQVAVEQ-VGGKGRVIAVDLQPMK---------PI--ENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred hcccCCCCEEEEecCCCCH--HHHHHHHH-hCCCceEEEEeccccc---------cC--CCceEEEeeCCChhHHHHHHH
Confidence 3444667899999999997 55555533 2346799999999864 11 126788888743 1 1 1
Q ss_pred CC--CCccEEEEeCCCc-------cc-------HHHHHH-hccCCCceEEEEe
Q 027409 110 EL--KGVDFLVVDCTSK-------DF-------ARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 110 ~L--~~fDfVFIDa~K~-------~Y-------~~~f~~-~~~l~~GgvIV~D 145 (223)
.+ +.||+||.|+... ++ ...+.. .+.++|||.++.-
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 22 3699999997421 11 345553 3677999999885
No 147
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.31 E-value=2.6e-06 Score=72.73 Aligned_cols=94 Identities=22% Similarity=0.209 Sum_probs=72.2
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC---CCccEEEE
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL---KGVDFLVV 119 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L---~~fDfVFI 119 (223)
.+||||||.|- ..+.+|. ..++-.++.||+....+..|.+...+. |+. +.++.+||.+.|..+ +.+|-|+|
T Consensus 20 l~lEIG~G~G~--~l~~~A~--~~Pd~n~iGiE~~~~~v~~a~~~~~~~-~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGE--FLIELAK--RNPDINFIGIEIRKKRVAKALRKAEKR-GLKNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSH--HHHHHHH--HSTTSEEEEEES-HHHHHHHHHHHHHH-TTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCH--HHHHHHH--HCCCCCEEEEecchHHHHHHHHHHHhh-cccceEEEEccHHHHHhhcccCCchheEEE
Confidence 89999999997 7777764 345789999999999999999999999 999 999999999988864 36887777
Q ss_pred ---eCC-Ccc-------cHHHHHHh-ccCCCceEE
Q 027409 120 ---DCT-SKD-------FARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 120 ---Da~-K~~-------Y~~~f~~~-~~l~~GgvI 142 (223)
|-+ |.. .+++++.+ +.|++||.|
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 554 222 37788766 567999976
No 148
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=3.6e-06 Score=76.81 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev 107 (223)
-++|..+.+ +.++||.+|||.|. .+|+.++ .. -.+++.+|+||...+.|++|.+.- |+. ++.-.++..+.
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGI--LaIAa~k--LG-A~~v~g~DiDp~AV~aa~eNa~~N-~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGI--LAIAAAK--LG-AKKVVGVDIDPQAVEAARENARLN-GVELLVQAKGFLLLEV 224 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhH--HHHHHHH--cC-CceEEEecCCHHHHHHHHHHHHHc-CCchhhhcccccchhh
Confidence 455555555 99999999999997 6666543 21 246999999999999999999998 887 66777777776
Q ss_pred hcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 108 MGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
... .+||+|+-.-=-+--..+.+.+ +.++|||.+|.--++-..
T Consensus 225 ~~~-~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q 268 (300)
T COG2264 225 PEN-GPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQ 268 (300)
T ss_pred ccc-CcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhH
Confidence 554 5899999776444444555544 566999999988877544
No 149
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.29 E-value=1.6e-06 Score=76.26 Aligned_cols=127 Identities=19% Similarity=0.152 Sum_probs=92.8
Q ss_pred cccChhHHHHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHH
Q 027409 3 LVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSR 82 (223)
Q Consensus 3 ~~w~~~~a~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~ 82 (223)
|.|||+ .|++=-....+.. -+ |-..+-.-.|++|+++|||.|- ||=.|+ .+=+++.|+.||.+++|+
T Consensus 1 ~~W~p~----~Yl~F~~eRtRPa----~d-Lla~Vp~~~~~~v~DLGCGpGn--sTelL~--~RwP~A~i~GiDsS~~Ml 67 (257)
T COG4106 1 MDWNPD----QYLQFEDERTRPA----RD-LLARVPLERPRRVVDLGCGPGN--STELLA--RRWPDAVITGIDSSPAML 67 (257)
T ss_pred CCCCHH----HHHHHHHhccCcH----HH-HHhhCCccccceeeecCCCCCH--HHHHHH--HhCCCCeEeeccCCHHHH
Confidence 679986 5665544443321 12 2334556789999999999998 674554 355689999999999999
Q ss_pred HHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCC---CcccHHHHH-HhccCCCceEEEE---eCCC
Q 027409 83 LAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCT---SKDFARVLR-FARFSNKGAVLAF---KNAF 148 (223)
Q Consensus 83 ~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~---K~~Y~~~f~-~~~~l~~GgvIV~---DNvl 148 (223)
+.|++-+-++ +|..||..+.=+. .+.|++|-.|. -....+.|. ++..|.|||++.+ ||..
T Consensus 68 a~Aa~rlp~~-----~f~~aDl~~w~p~-~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 68 AKAAQRLPDA-----TFEEADLRTWKPE-QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred HHHHHhCCCC-----ceecccHhhcCCC-CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccC
Confidence 9997665554 8999998887654 47999999984 455666775 5567899999976 6664
No 150
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=7.5e-06 Score=74.15 Aligned_cols=116 Identities=13% Similarity=0.052 Sum_probs=85.9
Q ss_pred CcHHHHHHHHHH---HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 25 KESGVAELLSAM---AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 25 i~p~~g~fL~~L---~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
.++++-.=+..+ +.+.+=.+|||||||-|- .++.+|. .-|.+|+.+..+++.++.|++-+++. |++ |++
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~--l~~~aA~---~y~v~V~GvTlS~~Q~~~~~~r~~~~-gl~~~v~v 126 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG--LAIYAAE---EYGVTVVGVTLSEEQLAYAEKRIAAR-GLEDNVEV 126 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhH--HHHHHHH---HcCCEEEEeeCCHHHHHHHHHHHHHc-CCCcccEE
Confidence 344443334444 445567899999999885 5556543 33789999999999999999999999 999 999
Q ss_pred EecchHHHhcCCCCccEEE-EeC----CCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 100 IVRQAEEVMGELKGVDFLV-VDC----TSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVF-IDa----~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+.-|=.++=. +||=|. |.+ .+++|+.||+.+ .+|+|||.++.--+..
T Consensus 127 ~l~d~rd~~e---~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 127 RLQDYRDFEE---PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred Eecccccccc---ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 8777555432 477554 222 578999999977 5789999998877654
No 151
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.25 E-value=2.6e-06 Score=73.64 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEe
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFID 120 (223)
+-.++||+|||+|. .|-.||. + ..+++.+|.++..++.||+-++.. .. |+++.+|--+..+. +.||+|.+=
T Consensus 43 ry~~alEvGCs~G~--lT~~LA~--r--Cd~LlavDis~~Al~~Ar~Rl~~~-~~-V~~~~~dvp~~~P~-~~FDLIV~S 113 (201)
T PF05401_consen 43 RYRRALEVGCSIGV--LTERLAP--R--CDRLLAVDISPRALARARERLAGL-PH-VEWIQADVPEFWPE-GRFDLIVLS 113 (201)
T ss_dssp SEEEEEEE--TTSH--HHHHHGG--G--EEEEEEEES-HHHHHHHHHHTTT--SS-EEEEES-TTT---S-S-EEEEEEE
T ss_pred ccceeEecCCCccH--HHHHHHH--h--hCceEEEeCCHHHHHHHHHhcCCC-CC-eEEEECcCCCCCCC-CCeeEEEEe
Confidence 44899999999998 7767752 2 468999999999999999988765 32 99999997665443 479999886
Q ss_pred CCCcccH-------HHHHHh-ccCCCceEEEEeC
Q 027409 121 CTSKDFA-------RVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 121 a~K~~Y~-------~~f~~~-~~l~~GgvIV~DN 146 (223)
. -..|. .+.+.+ ..|+|||.+|+=.
T Consensus 114 E-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 114 E-VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp S--GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred h-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 44453 234433 5679999988744
No 152
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.24 E-value=7.4e-06 Score=72.92 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++...+.+...+......+|||||||+|. .|.+++.. +++|+.+|+|+++++.++++++. -.++++.||
T Consensus 25 l~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~--lt~~L~~~----~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D 95 (272)
T PRK00274 25 LIDENILDKIVDAAGPQPGDNVLEIGPGLGA--LTEPLLER----AAKVTAVEIDRDLAPILAETFAE---DNLTIIEGD 95 (272)
T ss_pred CCCHHHHHHHHHhcCCCCcCeEEEeCCCccH--HHHHHHHh----CCcEEEEECCHHHHHHHHHhhcc---CceEEEECh
Confidence 5777777666666666777899999999998 77777643 34899999999999999987743 138999999
Q ss_pred hHHH
Q 027409 104 AEEV 107 (223)
Q Consensus 104 A~ev 107 (223)
+.+.
T Consensus 96 ~~~~ 99 (272)
T PRK00274 96 ALKV 99 (272)
T ss_pred hhcC
Confidence 9874
No 153
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.23 E-value=1.1e-05 Score=68.77 Aligned_cols=93 Identities=22% Similarity=0.226 Sum_probs=74.2
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~fDfVFIDa 121 (223)
++++||||.|+. +|-||.+. ++-+++-+|.+.++...-+....+. |++ ++++.+++.+ +.. ..||+|.-=|
T Consensus 51 ~~lDiGSGaGfP--GipLaI~~--p~~~~~LvEs~~KK~~FL~~~~~~L-~L~nv~v~~~R~E~--~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFP--GIPLAIAR--PDLQVTLVESVGKKVAFLKEVVREL-GLSNVEVINGRAEE--PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTT--HHHHHHH---TTSEEEEEESSHHHHHHHHHHHHHH-T-SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred eEEecCCCCCCh--hHHHHHhC--CCCcEEEEeCCchHHHHHHHHHHHh-CCCCEEEEEeeecc--cccCCCccEEEeeh
Confidence 799999999995 44555432 4678999999999999999999999 999 9999999999 333 4899999999
Q ss_pred CCcccHHHHHHhccC-CCceEEEE
Q 027409 122 TSKDFARVLRFARFS-NKGAVLAF 144 (223)
Q Consensus 122 ~K~~Y~~~f~~~~~l-~~GgvIV~ 144 (223)
-. ....+++.+.++ ++||.+++
T Consensus 124 v~-~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 124 VA-PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp SS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred hc-CHHHHHHHHHHhcCCCCEEEE
Confidence 54 667888888665 99998875
No 154
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=6.4e-06 Score=74.49 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecc
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQ 103 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~Gd 103 (223)
+|+ -+++-+++....--+|+|-|||.|- .+.++|+|..+ -|+++|.|.++.+++.|++.|++- |+. ++++.-|
T Consensus 91 t~D-ia~I~~~L~i~PGsvV~EsGTGSGS--lShaiaraV~p-tGhl~tfefH~~Ra~ka~eeFr~h-gi~~~vt~~hrD 165 (314)
T KOG2915|consen 91 TPD-IAMILSMLEIRPGSVVLESGTGSGS--LSHAIARAVAP-TGHLYTFEFHETRAEKALEEFREH-GIGDNVTVTHRD 165 (314)
T ss_pred ccc-HHHHHHHhcCCCCCEEEecCCCcch--HHHHHHHhhCc-CcceEEEEecHHHHHHHHHHHHHh-CCCcceEEEEee
Confidence 454 4556666778888899999999994 66689988766 489999999999999999999999 887 9998888
Q ss_pred hHHHhcCC--CCccEEEEeC
Q 027409 104 AEEVMGEL--KGVDFLVVDC 121 (223)
Q Consensus 104 A~evL~~L--~~fDfVFIDa 121 (223)
....=-.. ..+|-||+|-
T Consensus 166 Vc~~GF~~ks~~aDaVFLDl 185 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLDL 185 (314)
T ss_pred cccCCccccccccceEEEcC
Confidence 75421111 2699999996
No 155
>PHA03412 putative methyltransferase; Provisional
Probab=98.18 E-value=2e-05 Score=69.88 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcC-CCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAAR-HTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~-~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
++.+++++.+ ......+|||+|||+|- .+++++.... ++..+|+.+|+|+..++.|++|+.+ ++++.+|+
T Consensus 36 P~~iAr~~~i--~~~~~grVLDlG~GSG~--Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----~~~~~~D~ 106 (241)
T PHA03412 36 PIGLARDFTI--DACTSGSVVDLCAGIGG--LSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----ATWINADA 106 (241)
T ss_pred CHHHHHHHHH--hccCCCEEEEccChHHH--HHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----CEEEEcch
Confidence 3334565432 23356899999999996 5656654322 2357999999999999999988654 48888998
Q ss_pred HHHhcCCCCccEEEEeC--------C-Cccc------HHHHH-HhccCCCceEEEEeCCC
Q 027409 105 EEVMGELKGVDFLVVDC--------T-SKDF------ARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa--------~-K~~Y------~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
++... ...||+|+..- + +..| ..+++ +.+++++|++|+=-|++
T Consensus 107 ~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 107 LTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred hcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 75321 14799998651 1 1112 22444 23666999998888876
No 156
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.3e-05 Score=73.13 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
-++..+--||..|-...+- +||++|||+|+ .+++||.. .+..+||.+|.|...++.||+|++.- +++ .++..+
T Consensus 142 ~lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gv--lg~~la~~--~p~~~vtmvDvn~~Av~~ar~Nl~~N-~~~~~~v~~s 215 (300)
T COG2813 142 KLDKGSRLLLETLPPDLGG-KVLDLGCGYGV--LGLVLAKK--SPQAKLTLVDVNARAVESARKNLAAN-GVENTEVWAS 215 (300)
T ss_pred CcChHHHHHHHhCCccCCC-cEEEeCCCccH--HHHHHHHh--CCCCeEEEEecCHHHHHHHHHhHHHc-CCCccEEEEe
Confidence 4677777788888777666 99999999999 77777653 44789999999999999999999998 888 588999
Q ss_pred chHHHhcCCCCccEEEEe----CCCcccH----HHHHH-hccCCCce-EEEEeC
Q 027409 103 QAEEVMGELKGVDFLVVD----CTSKDFA----RVLRF-ARFSNKGA-VLAFKN 146 (223)
Q Consensus 103 dA~evL~~L~~fDfVFID----a~K~~Y~----~~f~~-~~~l~~Gg-vIV~DN 146 (223)
|..+-+.. .||+|... +.+.--. +++.. ..-|++|| +-|+=|
T Consensus 216 ~~~~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 216 NLYEPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 98887665 89999875 2333333 66764 45666666 444444
No 157
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.17 E-value=1.5e-05 Score=63.04 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHHHHHHHHH-hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 29 VAELLSAMAA-GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 29 ~g~fL~~L~~-~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
..+++..+.. ....++|||||||.|. .+..|+. . +.+++.+|++++..+. .. .. ...-++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~--~--~~~~~g~D~~~~~~~~------~~--~~--~~~~~~~~~ 72 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGS--FLRALAK--R--GFEVTGVDISPQMIEK------RN--VV--FDNFDAQDP 72 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSH--HHHHHHH--T--TSEEEEEESSHHHHHH------TT--SE--EEEEECHTH
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCH--HHHHHHH--h--CCEEEEEECCHHHHhh------hh--hh--hhhhhhhhh
Confidence 4456666664 7889999999999996 5545543 2 4499999999998877 22 22 111111122
Q ss_pred hcCCCCccEEEEeCCCccc---HHHHHHh-ccCCCceEEEEeCCCC
Q 027409 108 MGELKGVDFLVVDCTSKDF---ARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~~Y---~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
...-+.||+|+.=..=++- ..+++.+ +.++|||.+++.....
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1112489999998655544 4444444 5679999999988653
No 158
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.16 E-value=3.8e-05 Score=65.79 Aligned_cols=111 Identities=15% Similarity=0.250 Sum_probs=84.3
Q ss_pred HHHHHHHHH-hcCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchH
Q 027409 30 AELLSAMAA-GWNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAE 105 (223)
Q Consensus 30 g~fL~~L~~-~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ 105 (223)
..+.++|.. -..=.++|++=.|.|. .++ +|. ..+ .++|-||.|.+.+...++|++.. |.+ .+++.+||.
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGa--LGl---EAl-SRGA~~~~~vE~~~~a~~~l~~N~~~l-~~~~~~~~~~~da~ 103 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGA--LGL---EAL-SRGAARVVFVEKDRKAVKILKENLKAL-GLEGEARVLRNDAL 103 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccH--hHH---HHH-hCCCceEEEEecCHHHHHHHHHHHHHh-CCccceEEEeecHH
Confidence 567777777 3777899999666553 332 232 233 57999999999999999999998 866 999999999
Q ss_pred HHhcCCC---CccEEEEeC--CCcccHHHHHHh-----ccCCCceEEEEeCC
Q 027409 106 EVMGELK---GVDFLVVDC--TSKDFARVLRFA-----RFSNKGAVLAFKNA 147 (223)
Q Consensus 106 evL~~L~---~fDfVFIDa--~K~~Y~~~f~~~-----~~l~~GgvIV~DNv 147 (223)
..|+.+. +||+||+|- +|+.+.....++ ..++++|+||+..-
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 9998873 499999996 466775454432 34699999998764
No 159
>PRK05785 hypothetical protein; Provisional
Probab=98.16 E-value=1.7e-05 Score=68.86 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=65.6
Q ss_pred HHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 31 ELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 31 ~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
+++..+... ..+.+|||||||+|. .+..++... +++|+.+|.++++++.|++. . +++.||+.+ ++
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~--~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~---~-----~~~~~d~~~-lp 105 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGE--LSYHFKKVF---KYYVVALDYAENMLKMNLVA---D-----DKVVGSFEA-LP 105 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCH--HHHHHHHhc---CCEEEEECCCHHHHHHHHhc---c-----ceEEechhh-CC
Confidence 445555443 357899999999997 666665432 57999999999999999862 2 456789876 45
Q ss_pred CC-CCccEEEEeCCC---cccHHHHHHh-ccCCCce
Q 027409 110 EL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGA 140 (223)
Q Consensus 110 ~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~Gg 140 (223)
-- +.||.|++=..- .+....+..+ +.++|..
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 32 479999975433 2334555433 5667654
No 160
>PRK00536 speE spermidine synthase; Provisional
Probab=98.16 E-value=1.9e-05 Score=70.73 Aligned_cols=98 Identities=7% Similarity=-0.088 Sum_probs=71.2
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCce-EEEEecchHHHhcCC-
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWV-SEVIVRQAEEVMGEL- 111 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~-I~li~GdA~evL~~L- 111 (223)
..--+||+||=||.|-|- + +-+..+.+. +|+-+|+|++.++.+|++|-.. +... ++++.. +...-
T Consensus 68 ~~h~~pk~VLIiGGGDGg---~--~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~ 137 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLE---L--AHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDI 137 (262)
T ss_pred hhCCCCCeEEEEcCCchH---H--HHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccC
Confidence 344689999999999873 3 334456654 9999999999999999986643 2223 888872 22222
Q ss_pred CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 112 KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.||.|.+|+-- =+++++.+ +.|++||++|+=.
T Consensus 138 ~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 138 KKYDLIICLQEP--DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEECC
Confidence 479999999642 25677766 5679999999843
No 161
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.08 E-value=4.7e-05 Score=70.11 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=76.3
Q ss_pred cccChhHHHHHHHHhhcccC-----------CCCc--HHHHHHHHHHHHhc-----------CCCeEEEEccCcchHHHH
Q 027409 3 LVWSPDAASKAYIDTVKSCE-----------NIKE--SGVAELLSAMAAGW-----------NAKLIVEAWTHGGPITTS 58 (223)
Q Consensus 3 ~~w~~~~a~~ayl~~l~~~~-----------~ii~--p~~g~fL~~L~~~~-----------~ak~ILEIGT~~Gys~St 58 (223)
+.|+...|.+++=.+|.... ...+ |.=..++..+.-+. ...+|||||||+|.++.
T Consensus 52 idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~- 130 (321)
T PRK11727 52 IDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYP- 130 (321)
T ss_pred eeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHH-
Confidence 45777777777766665533 1222 33456666555552 45899999999886333
Q ss_pred HHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCC----CCccEEEEe
Q 027409 59 IGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGEL----KGVDFLVVD 120 (223)
Q Consensus 59 l~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L----~~fDfVFID 120 (223)
.|+ ....+.+++.+|+|++.++.|++|++..-+++ |+++. .|..+++..+ +.||||+.-
T Consensus 131 -lLa--~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 131 -LIG--VHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred -HHH--hhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeC
Confidence 333 33446799999999999999999999751255 88864 5665555543 379999864
No 162
>PLN02672 methionine S-methyltransferase
Probab=98.07 E-value=2.5e-05 Score=81.67 Aligned_cols=91 Identities=14% Similarity=-0.017 Sum_probs=70.1
Q ss_pred CCcHHHHHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC-----
Q 027409 24 IKESGVAELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG----- 94 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G----- 94 (223)
|-.|++-.|...|.... +.++|||+|||+|+ .++.+|... +.++++.+|++++.++.|++|.+.. +
T Consensus 97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~--Iai~La~~~--~~~~v~avDis~~Al~~A~~Na~~n-~l~~~~ 171 (1082)
T PLN02672 97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGW--ISIAIAEKW--LPSKVYGLDINPRAVKVAWINLYLN-ALDDDG 171 (1082)
T ss_pred cCchhHHHHHHHHHhcccccCCCCEEEEEecchHH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHc-Cccccc
Confidence 55788888888854321 24689999999998 676776432 3579999999999999999999874 3
Q ss_pred -----------ce-EEEEecchHHHhcCCC-CccEEEE
Q 027409 95 -----------WV-SEVIVRQAEEVMGELK-GVDFLVV 119 (223)
Q Consensus 95 -----------~~-I~li~GdA~evL~~L~-~fDfVFI 119 (223)
.. |+++.||..+.++... +||+|.-
T Consensus 172 ~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVS 209 (1082)
T PLN02672 172 LPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVG 209 (1082)
T ss_pred ccccccccccccccEEEEECchhhhccccCCceEEEEE
Confidence 23 9999999998776443 6888874
No 163
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.05 E-value=2.9e-05 Score=71.14 Aligned_cols=108 Identities=13% Similarity=0.056 Sum_probs=74.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfV 117 (223)
-..=|+||+|||+.|| .+.-|+.+ .-..|+.||.++...-..+ .++++.|.+ ..+......|-|+.++.||.|
T Consensus 113 ~L~gk~VLDIGC~nGY--~~frM~~~---GA~~ViGiDP~~lf~~QF~-~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtV 186 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGY--YSFRMLGR---GAKSVIGIDPSPLFYLQFE-AIKHFLGQDPPVFELPLGVEDLPNLGAFDTV 186 (315)
T ss_pred CcCCCEEEEecCCCcH--HHHHHhhc---CCCEEEEECCChHHHHHHH-HHHHHhCCCccEEEcCcchhhccccCCcCEE
Confidence 4566899999999999 66555422 1236999999988665532 233333555 455567888999887799999
Q ss_pred EEeCCCccc---HHHHHHhc-cCCCceEEEEeCCCCCCc
Q 027409 118 VVDCTSKDF---ARVLRFAR-FSNKGAVLAFKNAFQRST 152 (223)
Q Consensus 118 FIDa~K~~Y---~~~f~~~~-~l~~GgvIV~DNvl~~g~ 152 (223)
|.=+---+- ...+..++ .+++||-+|.+.+.-.|.
T Consensus 187 F~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 187 FSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred EEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 987652222 44454443 569999999999876554
No 164
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.05 E-value=3.5e-05 Score=66.20 Aligned_cols=106 Identities=11% Similarity=0.069 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
-+++.+ +...++.++|.+|||.|- =+++||.- |=.|+.+|.++..++.+++.-++. +++|+....|-.+.
T Consensus 20 s~v~~a-~~~~~~g~~LDlgcG~GR--NalyLA~~----G~~VtAvD~s~~al~~l~~~a~~~-~l~i~~~~~Dl~~~-- 89 (192)
T PF03848_consen 20 SEVLEA-VPLLKPGKALDLGCGEGR--NALYLASQ----GFDVTAVDISPVALEKLQRLAEEE-GLDIRTRVADLNDF-- 89 (192)
T ss_dssp HHHHHH-CTTS-SSEEEEES-TTSH--HHHHHHHT----T-EEEEEESSHHHHHHHHHHHHHT-T-TEEEEE-BGCCB--
T ss_pred HHHHHH-HhhcCCCcEEEcCCCCcH--HHHHHHHC----CCeEEEEECCHHHHHHHHHHHhhc-CceeEEEEecchhc--
Confidence 344433 567789999999999998 78898742 567999999999999998877777 88899998885442
Q ss_pred CC-CCccEEEEe-----CCCcccHHHHHHhc-cCCCceEEEEe
Q 027409 110 EL-KGVDFLVVD-----CTSKDFARVLRFAR-FSNKGAVLAFK 145 (223)
Q Consensus 110 ~L-~~fDfVFID-----a~K~~Y~~~f~~~~-~l~~GgvIV~D 145 (223)
.+ +.||+|+-. ..++.-+.+++.++ -++|||+.+.-
T Consensus 90 ~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 90 DFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp S-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 22 479999753 34556677788775 45999998873
No 165
>PHA03411 putative methyltransferase; Provisional
Probab=98.03 E-value=2.7e-05 Score=70.47 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=56.6
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
......+|||+|||+|. .++.++.. ..+.+|+.+|+++++++.|++++.+ ++++.+|+.+.... ..||+|
T Consensus 61 ~~~~~grVLDLGcGsGi--lsl~la~r--~~~~~V~gVDisp~al~~Ar~n~~~-----v~~v~~D~~e~~~~-~kFDlI 130 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGR--LSFCMLHR--CKPEKIVCVELNPEFARIGKRLLPE-----AEWITSDVFEFESN-EKFDVV 130 (279)
T ss_pred ccccCCeEEEcCCCCCH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHhCcC-----CEEEECchhhhccc-CCCcEE
Confidence 33446799999999996 55555432 2246999999999999999987533 58999999986532 479999
Q ss_pred EEeC
Q 027409 118 VVDC 121 (223)
Q Consensus 118 FIDa 121 (223)
+.+.
T Consensus 131 IsNP 134 (279)
T PHA03411 131 ISNP 134 (279)
T ss_pred EEcC
Confidence 9964
No 166
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.03 E-value=2.3e-05 Score=65.79 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=51.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVF 118 (223)
...+|||||||.|. .+..++.. .+..++.||.++++++.|++ . + ++++.+|+.+.++.+ +.||+|+
T Consensus 13 ~~~~iLDiGcG~G~--~~~~l~~~---~~~~~~giD~s~~~i~~a~~----~-~--~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 13 PGSRVLDLGCGDGE--LLALLRDE---KQVRGYGIEIDQDGVLACVA----R-G--VNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred CCCEEEEeCCCCCH--HHHHHHhc---cCCcEEEEeCCHHHHHHHHH----c-C--CeEEEEEhhhcccccCCCCcCEEE
Confidence 55799999999997 55566532 24568999999998888754 2 3 578889998766544 3799999
Q ss_pred EeCC
Q 027409 119 VDCT 122 (223)
Q Consensus 119 IDa~ 122 (223)
.-..
T Consensus 81 ~~~~ 84 (194)
T TIGR02081 81 LSQT 84 (194)
T ss_pred EhhH
Confidence 8653
No 167
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.02 E-value=4.7e-05 Score=67.82 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHH---hcCCCCcEEEEEeC-------C-----------
Q 027409 24 IKESGVAELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAI---AARHTCARHVCIVP-------D----------- 78 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~---A~~~~~g~i~TIE~-------d----------- 78 (223)
.+.+.--..|..+++-. =|-.|+|.|+.-|- |++.++. +...++-+|.-.|. +
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGg--s~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~ 130 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGG--SSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWE 130 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSH--HHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCT
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCH--HHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhh
Confidence 45666666666666544 57889999999996 5544332 11123345765542 0
Q ss_pred --------chHHHHHHHHHHhhcCce---EEEEecchHHHhcCC--CCccEEEEeCCCcccHHHH---HHhcc-CCCceE
Q 027409 79 --------ERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARVL---RFARF-SNKGAV 141 (223)
Q Consensus 79 --------~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f---~~~~~-l~~Ggv 141 (223)
.-..+..++||+++ |+. ++++.|.-.+.|++. +.+-|+.||+| .|..-. +.+.+ +.+||+
T Consensus 131 ~~~~~~~~~~s~e~V~~n~~~~-gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D--lYesT~~aLe~lyprl~~GGi 207 (248)
T PF05711_consen 131 FHEYNGYLAVSLEEVRENFARY-GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD--LYESTKDALEFLYPRLSPGGI 207 (248)
T ss_dssp CCGCCHHCTHHHHHHHHCCCCT-TTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEE
T ss_pred hhhcccccccCHHHHHHHHHHc-CCCcccEEEECCcchhhhccCCCccEEEEEEecc--chHHHHHHHHHHHhhcCCCeE
Confidence 11467788889988 873 999999999999986 47999999998 675554 44444 599999
Q ss_pred EEEeCCCCCCc
Q 027409 142 LAFKNAFQRST 152 (223)
Q Consensus 142 IV~DNvl~~g~ 152 (223)
||+|+-...|.
T Consensus 208 Ii~DDY~~~gc 218 (248)
T PF05711_consen 208 IIFDDYGHPGC 218 (248)
T ss_dssp EEESSTTTHHH
T ss_pred EEEeCCCChHH
Confidence 99999766443
No 168
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.01 E-value=2.5e-05 Score=68.57 Aligned_cols=76 Identities=18% Similarity=0.064 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
++++...+-+-..+...+..+|||||||+|. .|..|+.. ..+++++|.|+++++.+++++... -.++++.+|
T Consensus 12 l~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~--lt~~L~~~----~~~v~~iE~d~~~~~~l~~~~~~~--~~v~v~~~D 83 (253)
T TIGR00755 12 LIDESVIQKIVEAANVLEGDVVLEIGPGLGA--LTEPLLKR----AKKVTAIEIDPRLAEILRKLLSLY--ERLEVIEGD 83 (253)
T ss_pred CCCHHHHHHHHHhcCCCCcCEEEEeCCCCCH--HHHHHHHh----CCcEEEEECCHHHHHHHHHHhCcC--CcEEEEECc
Confidence 5677776666656666778999999999998 67677643 246999999999999999887532 128999999
Q ss_pred hHHH
Q 027409 104 AEEV 107 (223)
Q Consensus 104 A~ev 107 (223)
+.+.
T Consensus 84 ~~~~ 87 (253)
T TIGR00755 84 ALKV 87 (253)
T ss_pred hhcC
Confidence 9873
No 169
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.00 E-value=3e-05 Score=66.90 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=68.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+-..||..-||+|| .+|-+|.- ....+|+++|+||+.++..++|.+.- +++ |+.+.||+.++++ -..||=
T Consensus 99 v~~~e~VlD~faGIG~--f~l~~ak~--~~~~~V~A~d~Np~a~~~L~~Ni~lN-kv~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGP--FSLPIAKH--GKAKRVYAVDLNPDAVEYLKENIRLN-KVENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp --TT-EEEETT-TTTT--THHHHHHH--T-SSEEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEES-GGG----TT-EEE
T ss_pred CCcceEEEEccCCccH--HHHHHhhh--cCccEEEEecCCHHHHHHHHHHHHHc-CCCCeEEEEcCCHHHhcC-ccccCE
Confidence 3446799999999999 88877642 33578999999999999999999998 888 9999999999988 457999
Q ss_pred EEEeCCCcccHHHHHHh-ccCCCceEE
Q 027409 117 LVVDCTSKDFARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~~~-~~l~~GgvI 142 (223)
|.++- +..-.+|++.+ ..+++||+|
T Consensus 173 vim~l-p~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 173 VIMNL-PESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEE---TSSGGGGHHHHHHHEEEEEEE
T ss_pred EEECC-hHHHHHHHHHHHHHhcCCcEE
Confidence 99987 44445688755 566888887
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=9.1e-05 Score=63.81 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=66.8
Q ss_pred CCcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
...++.+..+-+.+.+. .-+.|+++|||+|. .++..+ ...+ .+|+++|+|++.++.||+|-++. +..|+++
T Consensus 25 ~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~--La~ga~--~lGa-~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~ 98 (198)
T COG2263 25 RTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGI--LAIGAA--LLGA-SRVLAVDIDPEALEIARANAEEL-LGDVEFV 98 (198)
T ss_pred CCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCH--HHHHHH--hcCC-cEEEEEecCHHHHHHHHHHHHhh-CCceEEE
Confidence 45666777777777655 45789999999996 544432 3322 58999999999999999999996 6669999
Q ss_pred ecchHHHhcCCCCccEEEEe
Q 027409 101 VRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFID 120 (223)
..|+.+.= .++|-|+++
T Consensus 99 ~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 99 VADVSDFR---GKFDTVIMN 115 (198)
T ss_pred EcchhhcC---CccceEEEC
Confidence 99987642 267777777
No 171
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=0.00013 Score=63.71 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=91.5
Q ss_pred HHHHHHhhcccCC------CCcHH---HHHHHHHHH---HhcC-CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC
Q 027409 11 SKAYIDTVKSCEN------IKESG---VAELLSAMA---AGWN-AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP 77 (223)
Q Consensus 11 ~~ayl~~l~~~~~------ii~p~---~g~fL~~L~---~~~~-ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~ 77 (223)
-.+|.+-|..-+. +-+++ +-.||-.++ ...+ ++++++||||.|.. ++=||.+ -++.++|=+|.
T Consensus 24 l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfP--GipLAI~--~p~~~vtLles 99 (215)
T COG0357 24 LEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFP--GIPLAIA--FPDLKVTLLES 99 (215)
T ss_pred HHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCc--hhhHHHh--ccCCcEEEEcc
Confidence 3488888888664 22321 122332222 2223 79999999999994 5555533 34677999999
Q ss_pred CchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccC-CCceEEEE
Q 027409 78 DERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFS-NKGAVLAF 144 (223)
Q Consensus 78 d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l-~~GgvIV~ 144 (223)
+.++...=++..++. |++ ++++.|.|.+.=.+..-||+|-.=|- ..-..+++.+.++ ++||.+++
T Consensus 100 ~~Kk~~FL~~~~~eL-~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 100 LGKKIAFLREVKKEL-GLENVEIVHGRAEEFGQEKKQYDVVTSRAV-ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred CchHHHHHHHHHHHh-CCCCeEEehhhHhhcccccccCcEEEeehc-cchHHHHHHHHHhcccCCcchh
Confidence 999999999999999 999 99999999986554322999999883 4556678877655 88777654
No 172
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=0.00016 Score=67.25 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHh
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVM 108 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL 108 (223)
+=.+++-....=..||..=+|+|| .||-+|....+ +|+++|+||..++..++|++.- +++ |+.+.|||.+++
T Consensus 178 ER~Rva~~v~~GE~V~DmFAGVGp--fsi~~Ak~g~~---~V~A~diNP~A~~~L~eNi~LN-~v~~~v~~i~gD~rev~ 251 (341)
T COG2520 178 ERARVAELVKEGETVLDMFAGVGP--FSIPIAKKGRP---KVYAIDINPDAVEYLKENIRLN-KVEGRVEPILGDAREVA 251 (341)
T ss_pred HHHHHHhhhcCCCEEEEccCCccc--chhhhhhcCCc---eEEEEecCHHHHHHHHHHHHhc-CccceeeEEeccHHHhh
Confidence 333344444445788998899998 88888765432 3999999999999999999988 887 999999999999
Q ss_pred cCCCCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCCCCC
Q 027409 109 GELKGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 109 ~~L~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g 151 (223)
+++..+|=|++-.-+..+. |++ ++..+++||+|-.-......
T Consensus 252 ~~~~~aDrIim~~p~~a~~-fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 252 PELGVADRIIMGLPKSAHE-FLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred hccccCCEEEeCCCCcchh-hHHHHHHHhhcCcEEEEEeccchh
Confidence 9988899999987665444 565 56777889999988876543
No 173
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.88 E-value=0.00021 Score=59.61 Aligned_cols=103 Identities=18% Similarity=0.134 Sum_probs=62.9
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC--ce--EEEEec---chH--HH
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG--WV--SEVIVR---QAE--EV 107 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G--~~--I~li~G---dA~--ev 107 (223)
....+.++|||+|||+|. .+|++|.. ....+|+..|.++ -.+..+.|++.- + .. |++..- +.. +.
T Consensus 41 ~~~~~~~~VLELGaG~Gl--~gi~~a~~--~~~~~Vv~TD~~~-~l~~l~~Ni~~N-~~~~~~~v~v~~L~Wg~~~~~~~ 114 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGL--PGIAAAKL--FGAARVVLTDYNE-VLELLRRNIELN-GSLLDGRVSVRPLDWGDELDSDL 114 (173)
T ss_dssp GGGTTTSEEEETT-TTSH--HHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHH
T ss_pred hhhcCCceEEEECCccch--hHHHHHhc--cCCceEEEeccch-hhHHHHHHHHhc-cccccccccCcEEEecCcccccc
Confidence 346788999999999998 77777654 2357899999988 899999999975 4 22 555554 433 22
Q ss_pred hcCCCCccEEEE-eC--CCcccHHHHHHh-ccC-CCceEEEEeC
Q 027409 108 MGELKGVDFLVV-DC--TSKDFARVLRFA-RFS-NKGAVLAFKN 146 (223)
Q Consensus 108 L~~L~~fDfVFI-Da--~K~~Y~~~f~~~-~~l-~~GgvIV~DN 146 (223)
+. -.+||+|+- |+ +.+.++.++..+ .++ +.+.++++.-
T Consensus 115 ~~-~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 115 LE-PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp HS--SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cc-cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 22 137998874 43 466777777766 345 5555566553
No 174
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.81 E-value=3.1e-05 Score=68.34 Aligned_cols=99 Identities=20% Similarity=0.145 Sum_probs=76.7
Q ss_pred CcHH-HHHHHHHHH-HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 25 KESG-VAELLSAMA-AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 25 i~p~-~g~fL~~L~-~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
++|| .+.++..-+ +..++..|+..=||.|= -++..|+ .+..|++||+||.++..||.|.+-+ |+. |+||
T Consensus 76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gG--ntiqfa~----~~~~VisIdiDPikIa~AkhNaeiY-GI~~rItFI 148 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGG--NTIQFAL----QGPYVIAIDIDPVKIACARHNAEVY-GVPDRITFI 148 (263)
T ss_pred eccHHHHHHHHHHHHHhcCcchhhhhhhcCCc--hHHHHHH----hCCeEEEEeccHHHHHHHhccceee-cCCceeEEE
Confidence 4554 455554444 44499999999888773 6777763 2678999999999999999999999 999 9999
Q ss_pred ecchHHHhcCCC----CccEEEEeCCCcccHHHHH
Q 027409 101 VRQAEEVMGELK----GVDFLVVDCTSKDFARVLR 131 (223)
Q Consensus 101 ~GdA~evL~~L~----~fDfVFIDa~K~~Y~~~f~ 131 (223)
.||-+++...|+ .+|+||.-. .-.|+.|..
T Consensus 149 ~GD~ld~~~~lq~~K~~~~~vf~sp-pwggp~y~~ 182 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIKYDCVFLSP-PWGGPSYLR 182 (263)
T ss_pred echHHHHHHHHhhhhheeeeeecCC-CCCCcchhh
Confidence 999999988773 589999875 345666654
No 175
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00013 Score=65.44 Aligned_cols=89 Identities=17% Similarity=0.022 Sum_probs=62.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++.+-+-+-..+......+|||||.|.|- .|..|+.. ..+||.||+|+..++.-++.+... -.++++.||
T Consensus 13 L~d~~v~~kIv~~a~~~~~d~VlEIGpG~Ga--LT~~Ll~~----~~~v~aiEiD~~l~~~L~~~~~~~--~n~~vi~~D 84 (259)
T COG0030 13 LIDKNVIDKIVEAANISPGDNVLEIGPGLGA--LTEPLLER----AARVTAIEIDRRLAEVLKERFAPY--DNLTVINGD 84 (259)
T ss_pred ccCHHHHHHHHHhcCCCCCCeEEEECCCCCH--HHHHHHhh----cCeEEEEEeCHHHHHHHHHhcccc--cceEEEeCc
Confidence 4555554444444444555679999999996 77777642 568999999999999888887743 238999999
Q ss_pred hHHH-hcCCCCccEEEEe
Q 027409 104 AEEV-MGELKGVDFLVVD 120 (223)
Q Consensus 104 A~ev-L~~L~~fDfVFID 120 (223)
|+++ ++++..++.|+-.
T Consensus 85 aLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 85 ALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred hhcCcchhhcCCCEEEEc
Confidence 9983 3433356666643
No 176
>PRK04148 hypothetical protein; Provisional
Probab=97.74 E-value=7e-05 Score=61.03 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
+.++||.--....+.++|||||||+|+ +++..++ ..+..|+.||+|++..+.|+++ + ++++.+|-.+-
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~---~vA~~L~--~~G~~ViaIDi~~~aV~~a~~~-----~--~~~v~dDlf~p 70 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYF---KVAKKLK--ESGFDVIVIDINEKAVEKAKKL-----G--LNAFVDDLFNP 70 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCH---HHHHHHH--HCCCEEEEEECCHHHHHHHHHh-----C--CeEEECcCCCC
Confidence 356676665555566889999999985 3333333 2367899999999977766554 2 47788887762
Q ss_pred hcCC-CCccEEEE-eCCCcccHHHHHHhc
Q 027409 108 MGEL-KGVDFLVV-DCTSKDFARVLRFAR 134 (223)
Q Consensus 108 L~~L-~~fDfVFI-Da~K~~Y~~~f~~~~ 134 (223)
=.++ ..+|+|.- -.-.+.-+..+++.+
T Consensus 71 ~~~~y~~a~liysirpp~el~~~~~~la~ 99 (134)
T PRK04148 71 NLEIYKNAKLIYSIRPPRDLQPFILELAK 99 (134)
T ss_pred CHHHHhcCCEEEEeCCCHHHHHHHHHHHH
Confidence 2222 57898873 233333344444443
No 177
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.74 E-value=5.2e-05 Score=68.24 Aligned_cols=132 Identities=12% Similarity=0.059 Sum_probs=83.4
Q ss_pred cccChhHHHHHHHHhhcccCC-CCcHHHHHHHHHHHHhcC------CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEE
Q 027409 3 LVWSPDAASKAYIDTVKSCEN-IKESGVAELLSAMAAGWN------AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCI 75 (223)
Q Consensus 3 ~~w~~~~a~~ayl~~l~~~~~-ii~p~~g~fL~~L~~~~~------ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TI 75 (223)
-.|-.+.-...+|+.+...+- -|.. .+++..-.-.+ =++||+||||+|. .+.-||+ -+..|+.|
T Consensus 47 ~~wwd~~g~~~~Lh~mn~~Rl~fi~d---~~~~~v~~~~p~~k~~~g~~ilDvGCGgGL--LSepLAr----lga~V~GI 117 (282)
T KOG1270|consen 47 FTWWDEEGVRHPLHSMNQTRLPFIRD---DLRNRVNNHAPGSKPLLGMKILDVGCGGGL--LSEPLAR----LGAQVTGI 117 (282)
T ss_pred ccccccccchhhhhhccchhhhHHHH---HHHhcccccCCCccccCCceEEEeccCccc--cchhhHh----hCCeeEee
Confidence 357777777788888776653 1111 11111100111 2569999999998 7878874 36789999
Q ss_pred eCCchHHHHHHHHHHhh-----cCce--EEEEecchHHHhcCCCCccEEEEeCCCccc---HHHHHH-hccCCCceEEEE
Q 027409 76 VPDERSRLAYVKAMYDV-----VGWV--SEVIVRQAEEVMGELKGVDFLVVDCTSKDF---ARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 76 E~d~e~~~~Ar~~~~~a-----~G~~--I~li~GdA~evL~~L~~fDfVFIDa~K~~Y---~~~f~~-~~~l~~GgvIV~ 144 (223)
|..+++++.|++. ++. .+.. +++...++...- +.||-|..==.-++| +++++. +.+++|||.++.
T Consensus 118 D~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 118 DASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred cccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEe
Confidence 9999999999999 544 0111 445555544322 259999876556666 445553 467788877766
Q ss_pred eCC
Q 027409 145 KNA 147 (223)
Q Consensus 145 DNv 147 (223)
-.+
T Consensus 194 tti 196 (282)
T KOG1270|consen 194 TTI 196 (282)
T ss_pred eeh
Confidence 543
No 178
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.72 E-value=0.00012 Score=57.61 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=45.6
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA 104 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA 104 (223)
.+|+|||+.|+ .+++++.. .++++++++|.+|+.++.++++++.. |+. ++++....
T Consensus 1 ~vlDiGa~~G~--~~~~~~~~--~~~~~v~~~E~~~~~~~~l~~~~~~n-~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGD--TSLYFARK--GAEGRVIAFEPLPDAYEILEENVKLN-NLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccH--HHHHHHHh--CCCCEEEEEecCHHHHHHHHHHHHHc-CCCcEEEEEeee
Confidence 37999999998 78788754 34579999999999999999999987 776 66665443
No 179
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.71 E-value=0.0002 Score=60.26 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hc-CC-----CCcEEEEEeCCchHHHHHHHHHHhhcCce
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AA-RH-----TCARHVCIVPDERSRLAYVKAMYDVVGWV 96 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~-~~-----~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~ 96 (223)
.+.|..+..|-.|+...+-..+|+-=||+|- .-|--|. +. .. ...+++..|+|++.++.|++|++.+ |+.
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGt--iliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-g~~ 87 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGT--ILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-GVE 87 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSH--HHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-T-C
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCH--HHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-ccC
Confidence 5778888888888888777899999999884 2221111 11 11 1224999999999999999999999 988
Q ss_pred --EEEEecchHHHhcCCCCccEEEEeC-----------CCcccHHHHHHh-ccCCCceEEEEe
Q 027409 97 --SEVIVRQAEEVMGELKGVDFLVVDC-----------TSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 97 --I~li~GdA~evL~~L~~fDfVFIDa-----------~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
|++..+|+.+.=..-+.+|.|..|- .+..|.++++.+ +.+++..+++..
T Consensus 88 ~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 88 DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999999998541224799999992 135677777655 446666555544
No 180
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00055 Score=63.59 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=90.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++....++-..++.-..-.+||+.=.|-| +=|..+|.....+++.|+.+|.++.+...-++|+++. |+. +.++..
T Consensus 139 ~vQd~sS~l~a~~L~p~pge~VlD~cAAPG--GKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl-G~~nv~~~~~ 215 (355)
T COG0144 139 YVQDEASQLPALVLDPKPGERVLDLCAAPG--GKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL-GVRNVIVVNK 215 (355)
T ss_pred EEcCHHHHHHHHHcCCCCcCEEEEECCCCC--CHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc-CCCceEEEec
Confidence 456667777777777777799999966655 3566777654444566799999999999999999999 999 888888
Q ss_pred chHHHhcCC---CCccEEEEeCCCccc-------------------------HHHHH-HhccCCCceEEEEeCC
Q 027409 103 QAEEVMGEL---KGVDFLVVDCTSKDF-------------------------ARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 103 dA~evL~~L---~~fDfVFIDa~K~~Y-------------------------~~~f~-~~~~l~~GgvIV~DNv 147 (223)
|+....... .+||-|++||-=+.. .++++ +++.++|||+||...-
T Consensus 216 d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 216 DARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred ccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 887654433 259999999642221 23333 3367799999999984
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.66 E-value=0.00029 Score=67.53 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=73.2
Q ss_pred HHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcC--CCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 30 AELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAAR--HTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 30 g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~--~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
-+.|.-..+.. +.+.|+.||||.|- .+.+.+.|+. ...-+|+.||.|+......++..++- |++ |+++.
T Consensus 171 ~~al~D~~~~~~~~~~~~vVldVGAGrGp--L~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-~w~~~V~vi~ 247 (448)
T PF05185_consen 171 EEALKDRVRKNSYSSKDKVVLDVGAGRGP--LSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-GWGDKVTVIH 247 (448)
T ss_dssp HHHHHHHHTTS-SEETT-EEEEES-TTSH--HHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-TTTTTEEEEE
T ss_pred HHHHHhhhhhccccccceEEEEeCCCccH--HHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-CCCCeEEEEe
Confidence 34444444444 34779999999996 4433333331 22358999999998776666666776 765 99999
Q ss_pred cchHHH-hcCCCCccEEEEe-----CCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 102 RQAEEV-MGELKGVDFLVVD-----CTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~ev-L~~L~~fDfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||..++ ++ .+.|+|.-- .+-+.-+++++.. +.|+|||+++=..
T Consensus 248 ~d~r~v~lp--ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~ 297 (448)
T PF05185_consen 248 GDMREVELP--EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSS 297 (448)
T ss_dssp S-TTTSCHS--S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSE
T ss_pred CcccCCCCC--CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcc
Confidence 999884 34 278988643 2455778888876 5679999988554
No 182
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.66 E-value=0.00026 Score=64.53 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=64.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--C--CccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--K--GVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~--~fDf 116 (223)
....+|+.+||.|. -|..++... +++|+|+.+|.|++.++.|++.+++. -.++++.+|..+....+ + ++|.
T Consensus 19 pg~~vlD~TlG~GG--hS~~il~~~-~~~g~VigiD~D~~al~~ak~~L~~~--~ri~~i~~~f~~l~~~l~~~~~~vDg 93 (296)
T PRK00050 19 PDGIYVDGTFGGGG--HSRAILERL-GPKGRLIAIDRDPDAIAAAKDRLKPF--GRFTLVHGNFSNLKEVLAEGLGKVDG 93 (296)
T ss_pred CCCEEEEeCcCChH--HHHHHHHhC-CCCCEEEEEcCCHHHHHHHHHhhccC--CcEEEEeCCHHHHHHHHHcCCCccCE
Confidence 34589999999986 777887653 45799999999999999999988652 13999999999865444 2 7999
Q ss_pred EEEeCCCccc
Q 027409 117 LVVDCTSKDF 126 (223)
Q Consensus 117 VFIDa~K~~Y 126 (223)
|++|-.-..|
T Consensus 94 Il~DLGvSs~ 103 (296)
T PRK00050 94 ILLDLGVSSP 103 (296)
T ss_pred EEECCCcccc
Confidence 9999876665
No 183
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00076 Score=64.47 Aligned_cols=116 Identities=21% Similarity=0.089 Sum_probs=89.7
Q ss_pred CCcHHHHHHHHHHHHh----cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAELLSAMAAG----WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~----~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
+..+.+.+-|+..+.- .+..++|+.=||+|- .+|+||. ...+|+.+|++++.++.|++|-+.. |+. ++
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~--f~l~lA~----~~~~V~gvEi~~~aV~~A~~NA~~n-~i~N~~ 344 (432)
T COG2265 272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGT--FGLPLAK----RVKKVHGVEISPEAVEAAQENAAAN-GIDNVE 344 (432)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCCh--hhhhhcc----cCCEEEEEecCHHHHHHHHHHHHHc-CCCcEE
Confidence 5566666666555433 345689999999997 7878762 3568999999999999999999999 999 99
Q ss_pred EEecchHHHhcCC---CCccEEEEeCCCcccH-HHHHHhccC-CCceEEEEeC
Q 027409 99 VIVRQAEEVMGEL---KGVDFLVVDCTSKDFA-RVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 99 li~GdA~evL~~L---~~fDfVFIDa~K~~Y~-~~f~~~~~l-~~GgvIV~DN 146 (223)
|+.|+|.++++.. ..+|.|++|--...-. ++++.+..+ ++.=|-|.=|
T Consensus 345 f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCN 397 (432)
T COG2265 345 FIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCN 397 (432)
T ss_pred EEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCC
Confidence 9999999999876 3799999998755555 788877554 4444444445
No 184
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.59 E-value=0.00031 Score=65.00 Aligned_cols=104 Identities=17% Similarity=0.095 Sum_probs=68.6
Q ss_pred CCcHHHHHHHHHHH-HhcCC--CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 24 IKESGVAELLSAMA-AGWNA--KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~-~~~~a--k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
++.+.+.+-|...+ ...+. .+|||+=||+|- .|+.||.. ..+|+.||.+++.++.|++|.+.- |+. ++|
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~--fsl~la~~----~~~V~gvE~~~~av~~A~~Na~~N-~i~n~~f 248 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGT--FSLPLAKK----AKKVIGVEIVEEAVEDARENAKLN-GIDNVEF 248 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTC--CHHHHHCC----SSEEEEEES-HHHHHHHHHHHHHT-T--SEEE
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCH--HHHHHHhh----CCeEEEeeCCHHHHHHHHHHHHHc-CCCcceE
Confidence 66677665555544 34343 379999999997 77777632 468999999999999999999999 999 999
Q ss_pred EecchHHHhcC--------------CC--CccEEEEeCC-CcccHHHHHHhc
Q 027409 100 IVRQAEEVMGE--------------LK--GVDFLVVDCT-SKDFARVLRFAR 134 (223)
Q Consensus 100 i~GdA~evL~~--------------L~--~fDfVFIDa~-K~~Y~~~f~~~~ 134 (223)
+.++|.++... +. .+|.|++|-- ++--....+.+.
T Consensus 249 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~ 300 (352)
T PF05958_consen 249 IRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK 300 (352)
T ss_dssp EE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred EEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence 99999876431 11 5899999975 444455666653
No 185
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.52 E-value=0.00085 Score=65.12 Aligned_cols=98 Identities=13% Similarity=0.018 Sum_probs=74.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCC--CccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELK--GVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~--~fDf 116 (223)
.+...+||||||.|= +.+.+|. ..++--++.||+.......|.+-..+. |+. +.++.+|+..+...+. .+|-
T Consensus 346 ~~~p~~lEIG~G~G~--~~~~~A~--~~p~~~~iGiE~~~~~~~~~~~~~~~~-~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 346 EKRKVFLEIGFGMGE--HFINQAK--MNPDALFIGVEVYLNGVANVLKLAGEQ-NITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCCceEEEECCCchH--HHHHHHH--hCCCCCEEEEEeeHHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHhcCcccccE
Confidence 357899999999986 6666664 456778999999999888888888888 998 9999999866655552 4666
Q ss_pred EEE---eCC--Ccc------cHHHHHHh-ccCCCceEE
Q 027409 117 LVV---DCT--SKD------FARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 117 VFI---Da~--K~~------Y~~~f~~~-~~l~~GgvI 142 (223)
||| |-| |.+ .+++++.+ +.|++||.|
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i 458 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNL 458 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEE
Confidence 665 666 333 27788766 677999965
No 186
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.44 E-value=0.0011 Score=59.88 Aligned_cols=98 Identities=8% Similarity=0.030 Sum_probs=73.8
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCC----CCcEEEEEeCCchHHHHHHHHHHhhcCce----EEEEecchHHHhcCC-CC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARH----TCARHVCIVPDERSRLAYVKAMYDVVGWV----SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~----~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~----I~li~GdA~evL~~L-~~ 113 (223)
-++|++++|+|- .|+-+...+.. ++++|+-+|+||+++..+++-=++- ++. +++++|||.+ ||-- +.
T Consensus 102 m~~lDvaGGTGD--iaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~-LpFdd~s 177 (296)
T KOG1540|consen 102 MKVLDVAGGTGD--IAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAED-LPFDDDS 177 (296)
T ss_pred CeEEEecCCcch--hHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCccc-CCCCCCc
Confidence 589999999998 55555554432 3489999999999999999887666 665 8999999976 5621 37
Q ss_pred ccEEEEeCCCccc---HHHH-HHhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDF---ARVL-RFARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y---~~~f-~~~~~l~~GgvIV~ 144 (223)
||..-|--.=.+. .+.+ ++++.|+|||...|
T Consensus 178 ~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred ceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 8888776655555 4444 36689999998774
No 187
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0024 Score=56.55 Aligned_cols=140 Identities=15% Similarity=0.107 Sum_probs=93.4
Q ss_pred ccChhHHHHHHHHhhcccC-----C-CC---cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEE
Q 027409 4 VWSPDAASKAYIDTVKSCE-----N-IK---ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVC 74 (223)
Q Consensus 4 ~w~~~~a~~ayl~~l~~~~-----~-ii---~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~T 74 (223)
.|+.+.+.+.|+.+-...- + .+ +.--.+.+...+. .+-.+||+||=|-|.+.+.+. + .++ -+.+-
T Consensus 56 ~~~~a~~~qd~ls~~~D~ll~~~~k~VMm~WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQ--e--~~p-~~H~I 129 (271)
T KOG1709|consen 56 ADGNAPYLQDYLSTAEDTLLDSLGKGVMMRWETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQ--E--APP-DEHWI 129 (271)
T ss_pred ccccchHHHHHHhhhhhHHHhhccchhhhhhhhHHHHHHHHHHh-hCCceEEEeccchHHHHHHHh--h--cCC-cceEE
Confidence 3677777777776622111 0 11 1111222222222 678899999999887544333 2 233 36778
Q ss_pred EeCCchHHHHHHHH-HHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcccHHHHHH----hccCCCceEEEEeCC
Q 027409 75 IVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARVLRF----ARFSNKGAVLAFKNA 147 (223)
Q Consensus 75 IE~d~e~~~~Ar~~-~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f~~----~~~l~~GgvIV~DNv 147 (223)
||-+|+-.+.-|+. +.+- ..|-+.+|.-.++|++| +.||=||-|+-.+.|.+..+. .++++|+|+.-.=|.
T Consensus 130 iE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 130 IEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred EecCHHHHHHHHhcccccc--cceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 99999987766554 2211 11889999999999998 379999999999999877653 377899999998887
Q ss_pred CCCC
Q 027409 148 FQRS 151 (223)
Q Consensus 148 l~~g 151 (223)
+..+
T Consensus 208 ~~~~ 211 (271)
T KOG1709|consen 208 LGAD 211 (271)
T ss_pred cccc
Confidence 7655
No 188
>PRK10742 putative methyltransferase; Provisional
Probab=97.38 E-value=0.0013 Score=58.83 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=59.7
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc-----C--c-e-EEEEecchHHHhcCCC-C
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV-----G--W-V-SEVIVRQAEEVMGELK-G 113 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~-----G--~-~-I~li~GdA~evL~~L~-~ 113 (223)
+||+.-.|.|- -++-+| .+ |++|+.+|.||..+..-++++++++ + + . ++++.+|+.+.|..+. .
T Consensus 91 ~VLD~TAGlG~--Da~~la--s~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~ 164 (250)
T PRK10742 91 DVVDATAGLGR--DAFVLA--SV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR 164 (250)
T ss_pred EEEECCCCccH--HHHHHH--Hc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCC
Confidence 79999888885 554443 22 7899999999999999999999851 2 2 3 9999999999999874 7
Q ss_pred ccEEEEeCC
Q 027409 114 VDFLVVDCT 122 (223)
Q Consensus 114 fDfVFIDa~ 122 (223)
||+||+|--
T Consensus 165 fDVVYlDPM 173 (250)
T PRK10742 165 PQVVYLDPM 173 (250)
T ss_pred CcEEEECCC
Confidence 999999963
No 189
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.002 Score=60.08 Aligned_cols=122 Identities=18% Similarity=0.161 Sum_probs=92.5
Q ss_pred HHHhhcccCC------CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH
Q 027409 14 YIDTVKSCEN------IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK 87 (223)
Q Consensus 14 yl~~l~~~~~------ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~ 87 (223)
.+....+.++ .++|..+.++-.|++..+=.+||+==||||- +.+ +|. --|++++.+|++.++.+-|+.
T Consensus 164 ~~~~r~~~kRPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGg----iLi-Eag-l~G~~viG~Did~~mv~gak~ 237 (347)
T COG1041 164 AFEKRDPEKRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGG----ILI-EAG-LMGARVIGSDIDERMVRGAKI 237 (347)
T ss_pred HHhhcCcccCCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccH----HHH-hhh-hcCceEeecchHHHHHhhhhh
Confidence 3445555553 6799999999999999999999997777772 222 222 237899999999999999999
Q ss_pred HHHhhcCce-EEEEec-chHHHhcCCC--CccEEEEeC-------CCc-----ccHHHHHHh-ccCCCceEEEE
Q 027409 88 AMYDVVGWV-SEVIVR-QAEEVMGELK--GVDFLVVDC-------TSK-----DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 88 ~~~~a~G~~-I~li~G-dA~evL~~L~--~fDfVFIDa-------~K~-----~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|++.+ |++ ..+..+ ||.+ |+ |. .+|=|..|- .|. .|.+.|+.+ ..+++||.+|+
T Consensus 238 Nl~~y-~i~~~~~~~~~Da~~-lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 238 NLEYY-GIEDYPVLKVLDATN-LP-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred hhhhh-CcCceeEEEeccccc-CC-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 99999 988 777777 9987 35 63 499999992 222 378888755 67788885543
No 190
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.37 E-value=0.0012 Score=59.52 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.....+-..++.-..-.+||+.-+|-|- =|+.+|. .+...|+|+..|+++++...-++++++. |.. |.+...
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGg--Kt~~la~-~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-g~~~v~~~~~ 143 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMCAAPGG--KTTHLAE-LMGNKGEIVANDISPKRLKRLKENLKRL-GVFNVIVINA 143 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESSCTTSH--HHHHHHH-HTTTTSEEEEEESSHHHHHHHHHHHHHT-T-SSEEEEES
T ss_pred EecccccccccccccccccccccccccCCCC--ceeeeee-cccchhHHHHhccCHHHHHHHHHHHHhc-CCceEEEEee
Confidence 4455555666666666666899999888774 5656764 4566799999999999999999999999 999 888889
Q ss_pred chHHHhcCC-C-CccEEEEeCC
Q 027409 103 QAEEVMGEL-K-GVDFLVVDCT 122 (223)
Q Consensus 103 dA~evL~~L-~-~fDfVFIDa~ 122 (223)
|+.+..+.. . .||.|++||-
T Consensus 144 D~~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 144 DARKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp HHHHHHHHHHTTTEEEEEEECS
T ss_pred ccccccccccccccchhhcCCC
Confidence 999986654 3 5999999974
No 191
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.32 E-value=0.00053 Score=60.68 Aligned_cols=76 Identities=12% Similarity=0.010 Sum_probs=60.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
++++.+.+-+.-.+...+...|||||.|.|. .|-.|+... .+++.||.|++..+.-++.+... -.++++.||
T Consensus 13 L~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~--lT~~L~~~~----~~v~~vE~d~~~~~~L~~~~~~~--~~~~vi~~D 84 (262)
T PF00398_consen 13 LVDPNIADKIVDALDLSEGDTVLEIGPGPGA--LTRELLKRG----KRVIAVEIDPDLAKHLKERFASN--PNVEVINGD 84 (262)
T ss_dssp EEHHHHHHHHHHHHTCGTTSEEEEESSTTSC--CHHHHHHHS----SEEEEEESSHHHHHHHHHHCTTC--SSEEEEES-
T ss_pred eCCHHHHHHHHHhcCCCCCCEEEEeCCCCcc--chhhHhccc----CcceeecCcHhHHHHHHHHhhhc--ccceeeecc
Confidence 6788888888888888889999999999998 666776543 68999999999888887766622 238999999
Q ss_pred hHHH
Q 027409 104 AEEV 107 (223)
Q Consensus 104 A~ev 107 (223)
++++
T Consensus 85 ~l~~ 88 (262)
T PF00398_consen 85 FLKW 88 (262)
T ss_dssp TTTS
T ss_pred hhcc
Confidence 9973
No 192
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0019 Score=55.71 Aligned_cols=78 Identities=18% Similarity=0.089 Sum_probs=60.1
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
+.++|+-++|||||.|+. +-.|+... .+.....++|+||+..+..++.-+.- +..++.+.-|-...|.. ++.|.+
T Consensus 40 ~~~~~~i~lEIG~GSGvv--stfL~~~i-~~~~~~latDiNp~A~~~Tl~TA~~n-~~~~~~V~tdl~~~l~~-~~VDvL 114 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVV--STFLASVI-GPQALYLATDINPEALEATLETARCN-RVHIDVVRTDLLSGLRN-ESVDVL 114 (209)
T ss_pred hhcCceeEEEecCCcchH--HHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhc-CCccceeehhHHhhhcc-CCccEE
Confidence 345599999999999994 33555443 35678999999999888888877766 55588888888888876 788877
Q ss_pred EEe
Q 027409 118 VVD 120 (223)
Q Consensus 118 FID 120 (223)
...
T Consensus 115 vfN 117 (209)
T KOG3191|consen 115 VFN 117 (209)
T ss_pred EEC
Confidence 654
No 193
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.26 E-value=0.0015 Score=57.53 Aligned_cols=102 Identities=8% Similarity=-0.023 Sum_probs=72.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH------------HHhhcCceEEEEecchHHHh
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA------------MYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~------------~~~a~G~~I~li~GdA~evL 108 (223)
+..+||..|||-|+ -.+|||. .|-.|+.+|.++.-++.+.+- ++.+.|..|++..||..+.=
T Consensus 43 ~~~rvLvPgCGkg~--D~~~LA~----~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 43 DSSVCLIPMCGCSI--DMLFFLS----KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCeEEEeCCCChH--HHHHHHh----CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 34799999999998 7889874 255799999999988877551 11121334999999999842
Q ss_pred c--C-CCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 109 G--E-LKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 109 ~--~-L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
+ . +++||+|+-=+ ..+.=.+|.+.+ .+++|||.++.=.+-
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 1 2 35799965433 344557778766 567999988877653
No 194
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.26 E-value=0.0013 Score=61.14 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=74.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH-hcCCCCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV-MGELKGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev-L~~L~~fD 115 (223)
+.+-|.||.||||+|. .+++-|+|. --+++.+|-+ +.++.|++.++.- |++ |+++.|...|+ || .+..|
T Consensus 58 lf~dK~VlDVGcGtGI--LS~F~akAG---A~~V~aVe~S-~ia~~a~~iv~~N-~~~~ii~vi~gkvEdi~LP-~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGI--LSMFAAKAG---ARKVYAVEAS-SIADFARKIVKDN-GLEDVITVIKGKVEDIELP-VEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccH--HHHHHHHhC---cceEEEEech-HHHHHHHHHHHhc-CccceEEEeecceEEEecC-cccee
Confidence 6788999999999997 777777664 2479999986 5679999999998 888 99999999884 55 45788
Q ss_pred EEEEeCCCcccHHHHHH----h-----ccCCCceEEEEeCC
Q 027409 116 FLVVDCTSKDFARVLRF----A-----RFSNKGAVLAFKNA 147 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~----~-----~~l~~GgvIV~DNv 147 (223)
.|. +.=..|--+++. + +-|++||+|.=|-.
T Consensus 130 iIv--SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 130 IIV--SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred EEe--ehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 764 333344444431 1 34699999987663
No 195
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.25 E-value=0.0032 Score=59.52 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=74.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHH--HHhh----cCce-EEEEecchHHHhcC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKA--MYDV----VGWV-SEVIVRQAEEVMGE 110 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~--~~~a----~G~~-I~li~GdA~evL~~ 110 (223)
..+++++|-+|-|-|- ++-+-.+-| -++|+-+|.||++++.|+.+ +.+- +-.. +.++..||.+.|+.
T Consensus 287 ~~~a~~vLvlGGGDGL-----AlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~ 361 (508)
T COG4262 287 VRGARSVLVLGGGDGL-----ALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT 361 (508)
T ss_pred ccccceEEEEcCCchH-----HHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh
Confidence 3689999999998774 333223334 58999999999999999955 4432 1111 99999999999997
Q ss_pred C-CCccEEEEeCC-Ccc------c-HHHHHHh-ccCCCceEEEEe
Q 027409 111 L-KGVDFLVVDCT-SKD------F-ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 111 L-~~fDfVFIDa~-K~~------Y-~~~f~~~-~~l~~GgvIV~D 145 (223)
- +.||+|.+|-- +.+ | .+|+.++ +.++++|+.|+-
T Consensus 362 a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 362 AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 6 58999999953 222 3 4555555 567999999864
No 196
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.17 E-value=0.0014 Score=56.78 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=65.5
Q ss_pred EEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeCC
Q 027409 45 IVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 45 ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa~ 122 (223)
|.+|||-=|| ..++|..... --+++..|+++.-.+.|+++++++ |+. |+++.||.++.|+.-+..|.|.|=+-
T Consensus 1 vaDIGtDHgy--Lpi~L~~~~~--~~~~ia~DI~~gpL~~A~~~i~~~-~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGY--LPIYLLKNGK--APKAIAVDINPGPLEKAKENIAKY-GLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTH--HHHHHHHTTS--EEEEEEEESSHHHHHHHHHHHHHT-T-TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhH--HHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHHc-CCcccEEEEECCcccccCCCCCCCEEEEecC
Confidence 5789999999 8888875322 247999999999999999999999 988 99999999999875445899999875
Q ss_pred Cccc-HHHHHHhc-cC-CCceEEEEeCC
Q 027409 123 SKDF-ARVLRFAR-FS-NKGAVLAFKNA 147 (223)
Q Consensus 123 K~~Y-~~~f~~~~-~l-~~GgvIV~DNv 147 (223)
=+.- .+.++... .+ +..=+|+.-|-
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred CHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 3332 44445332 22 22346666663
No 197
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.15 E-value=0.0022 Score=58.38 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=70.5
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
..|++.+-|..=+.+..+-.|||||-|+|- .|..|.++ +.+|+++|.||.++..-.+-++-. ..+ .+++.|
T Consensus 42 kNp~v~~~I~~ka~~k~tD~VLEvGPGTGn--LT~~lLe~----~kkVvA~E~Dprmvael~krv~gt-p~~~kLqV~~g 114 (315)
T KOG0820|consen 42 KNPLVIDQIVEKADLKPTDVVLEVGPGTGN--LTVKLLEA----GKKVVAVEIDPRMVAELEKRVQGT-PKSGKLQVLHG 114 (315)
T ss_pred cCHHHHHHHHhccCCCCCCEEEEeCCCCCH--HHHHHHHh----cCeEEEEecCcHHHHHHHHHhcCC-CccceeeEEec
Confidence 467888888888888899999999999997 88888765 468999999999999988888876 555 999999
Q ss_pred chHHHhcCCCCccEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 103 dA~evL~~L~~fDfVFID 120 (223)
|.+.. ++..||.+.-.
T Consensus 115 D~lK~--d~P~fd~cVsN 130 (315)
T KOG0820|consen 115 DFLKT--DLPRFDGCVSN 130 (315)
T ss_pred ccccC--CCcccceeecc
Confidence 98762 33457766643
No 198
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.15 E-value=0.0014 Score=57.07 Aligned_cols=114 Identities=11% Similarity=-0.072 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH-HHH-----hhc----
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK-AMY-----DVV---- 93 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~-~~~-----~a~---- 93 (223)
-++|.--+++.. +......+||-.|||.|| -.+|||. . |-.|+.+|+++..++.|.+ +-. ..-
T Consensus 21 ~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~--D~~~La~--~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 21 EPNPALVEYLDS-LALKPGGRVLVPGCGKGY--DMLWLAE--Q--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp TSTHHHHHHHHH-HTTSTSEEEEETTTTTSC--HHHHHHH--T--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCCHHHHHHHHh-cCCCCCCeEEEeCCCChH--HHHHHHH--C--CCeEEEEecCHHHHHHHHHHhccCCCcccccceee
Confidence 567777777777 445666799999999999 7888874 2 5689999999998888732 221 000
Q ss_pred -Cce-EEEEecchHHHhcCC-CCccEEEEe-----CCCcccHHHHHHh-ccCCCceEEEE
Q 027409 94 -GWV-SEVIVRQAEEVMGEL-KGVDFLVVD-----CTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 94 -G~~-I~li~GdA~evL~~L-~~fDfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
... |++..||-.+.=+.. ++||+|+== -..+.=.+|.+.+ .+++|||.++.
T Consensus 94 ~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 94 YQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp ETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred ecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 111 799999999854443 589998622 2356668888866 56799998443
No 199
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.14 E-value=0.0012 Score=57.07 Aligned_cols=101 Identities=17% Similarity=0.094 Sum_probs=70.3
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccE
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDf 116 (223)
.-..+.++||+||.|.|. .++.++.+ .|+-++|-.|. |+.++.|++ .+ .|+++.||-.+.+|. +|+
T Consensus 96 ~d~~~~~~vvDvGGG~G~--~~~~l~~~--~P~l~~~v~Dl-p~v~~~~~~--~~----rv~~~~gd~f~~~P~---~D~ 161 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGH--FAIALARA--YPNLRATVFDL-PEVIEQAKE--AD----RVEFVPGDFFDPLPV---ADV 161 (241)
T ss_dssp STTTTSSEEEEET-TTSH--HHHHHHHH--STTSEEEEEE--HHHHCCHHH--TT----TEEEEES-TTTCCSS---ESE
T ss_pred ccccCccEEEeccCcchH--HHHHHHHH--CCCCcceeecc-Hhhhhcccc--cc----ccccccccHHhhhcc---ccc
Confidence 334578899999999997 66677654 35779988998 888898888 22 299999999966664 999
Q ss_pred EEEe-----CCCcccHHHHHHh-ccCCCc---eEEEEeCCCCCC
Q 027409 117 LVVD-----CTSKDFARVLRFA-RFSNKG---AVLAFKNAFQRS 151 (223)
Q Consensus 117 VFID-----a~K~~Y~~~f~~~-~~l~~G---gvIV~DNvl~~g 151 (223)
+++= -..++-...++.+ .-++|| -|+|.|.++...
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 9984 3445556667655 445655 666777776544
No 200
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.14 E-value=0.0041 Score=61.71 Aligned_cols=107 Identities=15% Similarity=0.068 Sum_probs=68.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHh----cCCC----CcEEEEEeCCchHHHHH--------------HHHHHhh----c
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIA----ARHT----CARHVCIVPDERSRLAY--------------VKAMYDV----V 93 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A----~~~~----~g~i~TIE~d~e~~~~A--------------r~~~~~a----~ 93 (223)
.+.=+|+|+|=|+||...++|-+.- ..++ .=+++++|.+|-..+.. .+..+.. -
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3446899999999996565554331 0111 13799999876322222 2222110 0
Q ss_pred Cc----------eEEEEecchHHHhcCCC-CccEEEEeCC-Cccc-----HHHHHHh-ccCCCceEEEEeC
Q 027409 94 GW----------VSEVIVRQAEEVMGELK-GVDFLVVDCT-SKDF-----ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 94 G~----------~I~li~GdA~evL~~L~-~fDfVFIDa~-K~~Y-----~~~f~~~-~~l~~GgvIV~DN 146 (223)
|. ..++..|||.+.|+++. .+|.+|+|+- +..- .++|..+ ++.++||.+++--
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 22 26789999999999985 6999999972 2222 5566554 5669999999764
No 201
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.13 E-value=0.00097 Score=58.03 Aligned_cols=70 Identities=26% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev 107 (223)
+-|=++++.-.. -...++|+|.|. .++.-|.++ -||+.||.||..+..|++|+.-. |.. +++++|||+..
T Consensus 22 avF~~ai~~va~-d~~~DLGaGsGi--Ls~~Aa~~A----~rViAiE~dPk~a~~a~eN~~v~-g~~n~evv~gDA~~y 92 (252)
T COG4076 22 AVFTSAIAEVAE-DTFADLGAGSGI--LSVVAAHAA----ERVIAIEKDPKRARLAEENLHVP-GDVNWEVVVGDARDY 92 (252)
T ss_pred HHHHHHHHHHhh-hceeeccCCcch--HHHHHHhhh----ceEEEEecCcHHHHHhhhcCCCC-CCcceEEEecccccc
Confidence 445555555555 678899999996 554444432 38999999999999999999887 888 99999999863
No 202
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.13 E-value=0.0033 Score=53.64 Aligned_cols=112 Identities=13% Similarity=-0.012 Sum_probs=71.9
Q ss_pred CcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe
Q 027409 25 KESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
|.|.+.-+-..+++.. ....|||+|.|+|.. |=++.. -+..+-.++.||.+++....-.+.|.. +++++
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~--TkaIL~-~gv~~~~L~~iE~~~dF~~~L~~~~p~-----~~ii~ 100 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVI--TKAILS-RGVRPESLTAIEYSPDFVCHLNQLYPG-----VNIIN 100 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHh--HHHHHh-cCCCccceEEEEeCHHHHHHHHHhCCC-----ccccc
Confidence 4444444444444444 456899999999994 444432 233456799999999987665555444 58999
Q ss_pred cchHHH---hcCC--CCccEEEEeCCCc-----ccHHHHHHh-ccCCCceEEEE
Q 027409 102 RQAEEV---MGEL--KGVDFLVVDCTSK-----DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 102 GdA~ev---L~~L--~~fDfVFIDa~K~-----~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|||... |.+- ..||-|+------ .-.++++.+ ..++.||.+|-
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 999763 3332 2599987643322 335677744 45688888874
No 203
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.06 E-value=0.0031 Score=54.61 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=67.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fD 115 (223)
..+|.+||.+|||.|- .-.-|+.- .-.++++.+|.+++..+.|+..=++- |.+ |+|..-|-.+- ..+ ++||
T Consensus 65 ~~~A~~VlDLGtGNG~--~L~~L~~e--gf~~~L~GvDYs~~AV~LA~niAe~~-~~~n~I~f~q~DI~~~-~~~~~qfd 138 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGH--LLFQLAKE--GFQSKLTGVDYSEKAVELAQNIAERD-GFSNEIRFQQLDITDP-DFLSGQFD 138 (227)
T ss_pred cccccceeeccCCchH--HHHHHHHh--cCCCCccccccCHHHHHHHHHHHHhc-CCCcceeEEEeeccCC-ccccccee
Confidence 4456699999999995 33344432 22467999999999999977666666 887 99987776542 112 4688
Q ss_pred EEE----EeC-------CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 116 FLV----VDC-------TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVF----IDa-------~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|+ .|| .++.-.-|++.+ ++|+|||+.|.--
T Consensus 139 lvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 139 LVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred EEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 776 222 222224456655 4568999888654
No 204
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.02 E-value=0.0063 Score=48.86 Aligned_cols=74 Identities=19% Similarity=0.098 Sum_probs=55.3
Q ss_pred HHHHHHHHHh----cCCCeEEEEccCcchHHHHHHHHHhc--CCCCcEEEEEeCCchHHHHHHHHHHhhcC--ce--EEE
Q 027409 30 AELLSAMAAG----WNAKLIVEAWTHGGPITTSIGLAIAA--RHTCARHVCIVPDERSRLAYVKAMYDVVG--WV--SEV 99 (223)
Q Consensus 30 g~fL~~L~~~----~~ak~ILEIGT~~Gys~Stl~la~A~--~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G--~~--I~l 99 (223)
.+++..++.. .++..|+++|+|-|| .+..|+... ..++-+|+.||.+++..+.|.+.-++. + .. +++
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~Gy--Ls~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~ 86 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGY--LSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKL-GSDLEKRLSF 86 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhH--HHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHh-cchhhccchh
Confidence 4555555555 889999999999999 777776411 135679999999999999999998887 6 42 666
Q ss_pred EecchHH
Q 027409 100 IVRQAEE 106 (223)
Q Consensus 100 i~GdA~e 106 (223)
+.++-.+
T Consensus 87 ~~~~~~~ 93 (141)
T PF13679_consen 87 IQGDIAD 93 (141)
T ss_pred hccchhh
Confidence 6665443
No 205
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.96 E-value=0.0037 Score=53.90 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=65.9
Q ss_pred HHHHhcC-CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--
Q 027409 35 AMAAGWN-AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-- 111 (223)
Q Consensus 35 ~L~~~~~-ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-- 111 (223)
.++..+. -.+||++|||.|- -|..... ..+...+.||+|++....+. ++ | +.+++||+.+-|+.+
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~---LL~~L~~--~k~v~g~GvEid~~~v~~cv---~r--G--v~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGE---LLAYLKD--EKQVDGYGVEIDPDNVAACV---AR--G--VSVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHHcCCCCEEEecCCCchH---HHHHHHH--hcCCeEEEEecCHHHHHHHH---Hc--C--CCEEECCHHHhHhhCCC
Confidence 3444443 3699999999884 3333322 24678999999998765543 33 4 579999999999987
Q ss_pred CCccEEEEeCCCcccHHHHHHh-ccC--CCceEEEEeCC
Q 027409 112 KGVDFLVVDCTSKDFARVLRFA-RFS--NKGAVLAFKNA 147 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~~~-~~l--~~GgvIV~DNv 147 (223)
+.||.|++--.-.+-.+=-+.+ .++ ..-+||-+-|.
T Consensus 74 ~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 74 QSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred CCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecCh
Confidence 3899999865322221111122 122 55689999996
No 206
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.91 E-value=0.0033 Score=51.57 Aligned_cols=74 Identities=11% Similarity=-0.027 Sum_probs=52.6
Q ss_pred EEEeCCchHHHHHHHHHHhh-cC-ce-EEEEecchHHHhcCC-CCccEEEEeCCC---cccHHHHHHh-ccCCCceEEEE
Q 027409 73 VCIVPDERSRLAYVKAMYDV-VG-WV-SEVIVRQAEEVMGEL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 73 ~TIE~d~e~~~~Ar~~~~~a-~G-~~-I~li~GdA~evL~~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.+|+++++++.|++..+.. .+ .. |+++.||+.+ |+-- +.||+|++-..- .+-.+.|..+ +.|+|||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 36899999999998776532 02 23 9999999976 4532 479999887533 3445666544 77899998876
Q ss_pred eCC
Q 027409 145 KNA 147 (223)
Q Consensus 145 DNv 147 (223)
-+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 544
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.87 E-value=0.014 Score=58.86 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHh-c-CC---------------------------------
Q 027409 24 IKESGVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIA-A-RH--------------------------------- 67 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A-~-~~--------------------------------- 67 (223)
.+.+..+.-|-.++.- .+-..+++-.||.|- ..|-.|+- . .+
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGT--ilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGT--LLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccH--HHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 4555555555555544 345789999999985 33322221 1 11
Q ss_pred -----CCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEEEEe
Q 027409 68 -----TCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFLVVD 120 (223)
Q Consensus 68 -----~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfVFID 120 (223)
...+|+.+|+|++.++.|++|++.+ |+. |+++.||+.+.-... +.||+|+.+
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~-g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRA-GVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHc-CCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 1347999999999999999999999 997 999999999854333 369999998
No 208
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.85 E-value=0.0019 Score=57.75 Aligned_cols=103 Identities=13% Similarity=0.012 Sum_probs=65.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHHHHhh--cCce-EEEEecchHHHhcCCCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKAMYDV--VGWV-SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~~~~a--~G~~-I~li~GdA~evL~~L~~fDf 116 (223)
.|..|||||||.|- |+|=..+..++ +=+|+++|-+|..++..+++-... ...+ +-=+.++.+..=..-+.+|+
T Consensus 71 ~~~~ilEvGCGvGN---tvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 71 SAETILEVGCGVGN---TVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred ChhhheeeccCCCc---ccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccce
Confidence 44589999999994 55554454433 368999999999988888875432 0111 33344444221111134663
Q ss_pred -----EEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 117 -----LVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 117 -----VFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||---.+++-...++.+ ++++|||.|++=+
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 33344688888899865 6779999998765
No 209
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.83 E-value=0.0073 Score=54.11 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=40.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
.+|++||++|+|.| +++|-+...-+.--.++++|.++++.+.++..++..
T Consensus 32 f~P~~vLD~GsGpG---ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 32 FRPRSVLDFGSGPG---TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCCceEEEecCChH---HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 48999999999987 466665544343457999999999999999988765
No 210
>PHA01634 hypothetical protein
Probab=96.79 E-value=0.0056 Score=50.24 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=56.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
+-|+|+.||.++|- |+|+++... --+|+.+|++|...+..+++++-. .+- .... + +.=...++||...
T Consensus 28 k~KtV~dIGA~iGd--SaiYF~l~G---AK~Vva~E~~~kl~k~~een~k~n-nI~DK~v~~-~---eW~~~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGS--SALYFLLRG---ASFVVQYEKEEKLRKKWEEVCAYF-NICDKAVMK-G---EWNGEYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccc--hhhHHhhcC---ccEEEEeccCHHHHHHHHHHhhhh-eeeeceeec-c---cccccCCCcceEE
Confidence 67999999999997 888887532 136999999999999999998876 442 1111 1 1112457999999
Q ss_pred EeCCCcccHHHH
Q 027409 119 VDCTSKDFARVL 130 (223)
Q Consensus 119 IDa~K~~Y~~~f 130 (223)
|||+ ...+.+
T Consensus 98 iDCe--GCE~~l 107 (156)
T PHA01634 98 MDCE--GCEEKL 107 (156)
T ss_pred EEcc--chHHhc
Confidence 9997 444444
No 211
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.75 E-value=0.012 Score=53.55 Aligned_cols=121 Identities=12% Similarity=-0.015 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcC----CCCcEEEEEeCCchHHHHHHHH------------
Q 027409 26 ESGVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAAR----HTCARHVCIVPDERSRLAYVKA------------ 88 (223)
Q Consensus 26 ~p~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~----~~~g~i~TIE~d~e~~~~Ar~~------------ 88 (223)
+|++=++|.-.++. .++=+|.-.||++|==++||+|..... +.+-+|+.+|+|++.++.|++-
T Consensus 99 d~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~ 178 (287)
T PRK10611 99 EAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSP 178 (287)
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCH
Confidence 55555555544432 244699999999994445666654431 1235799999999999999875
Q ss_pred ------HHhh----cC-------ce--EEEEecchHHH-hcCCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEE
Q 027409 89 ------MYDV----VG-------WV--SEVIVRQAEEV-MGELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 89 ------~~~a----~G-------~~--I~li~GdA~ev-L~~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvI 142 (223)
|.+. -| +. |+|...|..+- .+..++||+||.=. +++.-.+.++.+ ..|+|||++
T Consensus 179 ~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L 258 (287)
T PRK10611 179 QQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLL 258 (287)
T ss_pred HHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence 2210 01 11 88888888762 22235799999732 223335556543 667999998
Q ss_pred EEeC
Q 027409 143 AFKN 146 (223)
Q Consensus 143 V~DN 146 (223)
+.-.
T Consensus 259 ~lG~ 262 (287)
T PRK10611 259 FAGH 262 (287)
T ss_pred EEeC
Confidence 7654
No 212
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.72 E-value=0.012 Score=50.61 Aligned_cols=106 Identities=13% Similarity=0.031 Sum_probs=61.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhc--CC---CCcEEEEEeCCchHHHHHHHH--------------HHhhc----C--c
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAA--RH---TCARHVCIVPDERSRLAYVKA--------------MYDVV----G--W 95 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~--~~---~~g~i~TIE~d~e~~~~Ar~~--------------~~~a~----G--~ 95 (223)
++=+|.-+||++|-=++||+|.... .. .+-+|+.+|+|+..++.|++- .++++ | +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 6789999999999666777776555 21 135899999999999999742 12221 1 1
Q ss_pred --e------EEEEecchHHHhcCCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 96 --V------SEVIVRQAEEVMGELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 96 --~------I~li~GdA~evL~~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
. |+|...|-++.-+..++||+||.=- +.+.-.+.++.+ ..|+|||.++.=.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1 8888888887222335899998753 222224555533 5679999988655
No 213
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.68 E-value=0.0084 Score=51.89 Aligned_cols=107 Identities=13% Similarity=0.069 Sum_probs=59.8
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------cCce---EEEEecchHH
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------VGWV---SEVIVRQAEE 106 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------~G~~---I~li~GdA~e 106 (223)
.+.+..-...++||||.|= ..++.| ....--+.+.||+.++..+.|+...++. +|.. |+++.||-++
T Consensus 37 ~~~l~~~dvF~DlGSG~G~--~v~~aa--l~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGN--VVFQAA--LQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HTT--TT-EEEEES-TTSH--HHHHHH--HHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HhCCCCCCEEEECCCCCCH--HHHHHH--HHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 3455556688999999995 333332 2222245999999999999998754421 3664 9999999764
Q ss_pred --HhcCC-CCccEEEEeCCC--ccc-HHHHHHhccCCCceEEEEeC
Q 027409 107 --VMGEL-KGVDFLVVDCTS--KDF-ARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 107 --vL~~L-~~fDfVFIDa~K--~~Y-~~~f~~~~~l~~GgvIV~DN 146 (223)
..+.+ ..-|+||+..-- +.- ..+.+.+..+++|..||+=-
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred cHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 23332 568999998642 111 22222335569999999844
No 214
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.67 E-value=0.0028 Score=56.68 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCC-eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 30 AELLSAMAAGWNAK-LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 30 g~fL~~L~~~~~ak-~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
-.+++.++....-. .++|+|||+|- .++.+|. .. -+|+.+|+++++++.|++..... -.. ..+...+-.+
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gq--a~~~iae--~~--k~VIatD~s~~mL~~a~k~~~~~-y~~t~~~ms~~~~v~ 93 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQ--AARGIAE--HY--KEVIATDVSEAMLKVAKKHPPVT-YCHTPSTMSSDEMVD 93 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCc--chHHHHH--hh--hhheeecCCHHHHHHhhcCCCcc-cccCCcccccccccc
Confidence 56777777776544 99999999996 5555543 22 37999999999999999987754 121 4444433333
Q ss_pred HhcCCCCccEEEEeCCCccc---HHHHHHh-ccC-CCceEEEE
Q 027409 107 VMGELKGVDFLVVDCTSKDF---ARVLRFA-RFS-NKGAVLAF 144 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K~~Y---~~~f~~~-~~l-~~GgvIV~ 144 (223)
.+..=+..|||..= .--+| .+++..+ +.| ++||+|++
T Consensus 94 L~g~e~SVDlI~~A-qa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 94 LLGGEESVDLITAA-QAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ccCCCcceeeehhh-hhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 33222479988642 11122 4455433 666 78889886
No 215
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.62 E-value=0.0065 Score=50.18 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhc-----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 29 VAELLSAMAAGW-----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 29 ~g~fL~~L~~~~-----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.-.++.++-+-. +..++|++|++.|- .+-+++. ...+.++++.+|+.+. . ..+ +..+.|
T Consensus 6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGG--ws~~~~~-~~~~~~~v~avDl~~~-----------~-~~~~~~~i~~ 70 (181)
T PF01728_consen 6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGG--WSQVLLQ-RGGPAGRVVAVDLGPM-----------D-PLQNVSFIQG 70 (181)
T ss_dssp HHHHHHHHHTTSSS-TTTTEEEEEET-TTSH--HHHHHHT-STTTEEEEEEEESSST-----------G-S-TTEEBTTG
T ss_pred HHHHHHHHHHCCCCCcccccEEEEcCCcccc--eeeeeee-cccccceEEEEecccc-----------c-cccceeeeec
Confidence 344555555444 45999999999994 4433332 1223589999999988 1 223 455556
Q ss_pred ch-----HHHhcCC-----CCccEEEEeCC--------Cccc---HHHHHHh----ccCCCceEEEEeC
Q 027409 103 QA-----EEVMGEL-----KGVDFLVVDCT--------SKDF---ARVLRFA----RFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA-----~evL~~L-----~~fDfVFIDa~--------K~~Y---~~~f~~~----~~l~~GgvIV~DN 146 (223)
|. .+.+.+. .+||+|+.|.. ...+ .-.+..+ ..+++||..|+--
T Consensus 71 d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 71 DITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 53 2334332 37999999992 2222 1122222 4469999877654
No 216
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.61 E-value=0.014 Score=52.71 Aligned_cols=106 Identities=12% Similarity=-0.007 Sum_probs=65.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcC-----CCCcEEEEEeCCchHHHHHHH-------------------HHHhhc-C-
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAAR-----HTCARHVCIVPDERSRLAYVK-------------------AMYDVV-G- 94 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~-----~~~g~i~TIE~d~e~~~~Ar~-------------------~~~~a~-G- 94 (223)
++=+|..+||++|==++||||+.... +.+-+|+..|+|...++.|+. +|.+.. |
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 48899999999993333555544332 135789999999999998864 332220 1
Q ss_pred ce--------EEEEecchHHHhcCCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 95 WV--------SEVIVRQAEEVMGELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 95 ~~--------I~li~GdA~evL~~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
++ |+|...|.++--+-.++||+||+== +++.=.+.++.. ..|+|||+++.-+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 21 5666666554322224699998641 222224444433 5679999998765
No 217
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.57 E-value=0.0018 Score=57.84 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcC---CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH
Q 027409 29 VAELLSAMAAGWN---AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 29 ~g~fL~~L~~~~~---ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
+=++|..++.-.+ .+++|.+|||+|. ++..|- +--.+++.+|+++.|++.|.+- - .+. ++...||.
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL--~G~~lR----~~a~~ltGvDiS~nMl~kA~eK---g-~YD-~L~~Aea~ 178 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGL--TGEALR----DMADRLTGVDISENMLAKAHEK---G-LYD-TLYVAEAV 178 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCc--ccHhHH----HHHhhccCCchhHHHHHHHHhc---c-chH-HHHHHHHH
Confidence 3455665555443 6799999999998 444432 1124799999999999888653 2 332 45567887
Q ss_pred HHhcCC--CCccEEEEeCCCcccHHHHHH-----hccCCCceEEEEeC
Q 027409 106 EVMGEL--KGVDFLVVDCTSKDFARVLRF-----ARFSNKGAVLAFKN 146 (223)
Q Consensus 106 evL~~L--~~fDfVFIDa~K~~Y~~~f~~-----~~~l~~GgvIV~DN 146 (223)
..++.+ ++||+|- -++--.|.--++- ...|++||+.++--
T Consensus 179 ~Fl~~~~~er~DLi~-AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 179 LFLEDLTQERFDLIV-AADVLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred HHhhhccCCcccchh-hhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 788765 3899984 3455556444442 25779999998754
No 218
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.56 E-value=0.011 Score=54.41 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=83.7
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHHHHhh-cCce---EEEEecchHHHhcC
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKAMYDV-VGWV---SEVIVRQAEEVMGE 110 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~---I~li~GdA~evL~~ 110 (223)
|-+..+|+++|-||-+-|- .+-+-+++. =+.|.-+|+|..-++..++++... .|++ |.++.||..+.+..
T Consensus 116 l~s~~npkkvlVVgggDgg-----vlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~ 190 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGG-----VLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED 190 (337)
T ss_pred cccCCCCCeEEEEecCCcc-----ceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH
Confidence 4567899999999988663 233333443 367999999999999999999864 5776 99999999999998
Q ss_pred C--CCccEEEEeCCC------ccc-HHHHHHh-ccCCCceEEE--EeCCCCCC
Q 027409 111 L--KGVDFLVVDCTS------KDF-ARVLRFA-RFSNKGAVLA--FKNAFQRS 151 (223)
Q Consensus 111 L--~~fDfVFIDa~K------~~Y-~~~f~~~-~~l~~GgvIV--~DNvl~~g 151 (223)
+ ++||.|..|.+- ..| ..||+++ +-|+++|+++ +|++|.+-
T Consensus 191 ~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~ 243 (337)
T KOG1562|consen 191 LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHL 243 (337)
T ss_pred hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHH
Confidence 7 489999999753 234 3456655 5679999876 46666543
No 219
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.54 E-value=0.0063 Score=53.50 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=51.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc---e-EEEEecchHHHhcCCCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW---V-SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~---~-I~li~GdA~evL~~L~~fDf 116 (223)
+-+.+|+||||+|+ .|.+++.. .-++|+.+|.++++... +.-+.. .+ . ..+..=++.++-+++..+|+
T Consensus 75 ~~~~vlDiG~gtG~--~t~~l~~~---ga~~v~avD~~~~~l~~--~l~~~~-~v~~~~~~ni~~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 75 KNKIVLDVGSSTGG--FTDCALQK---GAKEVYGVDVGYNQLAE--KLRQDE-RVKVLERTNIRYVTPADIFPDFATFDV 146 (228)
T ss_pred CCCEEEEcccCCCH--HHHHHHHc---CCCEEEEEeCCHHHHHH--HHhcCC-CeeEeecCCcccCCHhHcCCCceeeeE
Confidence 45689999999998 88887643 13689999999976544 222222 11 1 11222233333334456888
Q ss_pred EEEeCCCcccHHHHHHh-ccCCCceEEE
Q 027409 117 LVVDCTSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
+|+=..+ .++.+ ..+++ |.+|
T Consensus 147 sfiS~~~-----~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 147 SFISLIS-----ILPELDLLLNP-NDLT 168 (228)
T ss_pred EEeehHh-----HHHHHHHHhCc-CeEE
Confidence 8886543 34433 34455 4444
No 220
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.0043 Score=52.05 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=72.7
Q ss_pred CCcHH-HHHHHHHHHHhcC---CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEE
Q 027409 24 IKESG-VAELLSAMAAGWN---AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEV 99 (223)
Q Consensus 24 ii~p~-~g~fL~~L~~~~~---ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~l 99 (223)
.-.|+ .+..++++-...+ -|.++.+||+.|. .+++.+ +...--++..|+||+.++.+..|-+++ -++|++
T Consensus 27 ~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGm--Ls~a~s---m~~~e~vlGfDIdpeALEIf~rNaeEf-Evqidl 100 (185)
T KOG3420|consen 27 PTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGM--LSIAFS---MPKNESVLGFDIDPEALEIFTRNAEEF-EVQIDL 100 (185)
T ss_pred CCcHHHHHHHHHHHHhhhccccCcchhhhcCchhh--hHHHhh---cCCCceEEeeecCHHHHHHHhhchHHh-hhhhhe
Confidence 44555 4566777766654 7999999999997 554543 444457999999999999999999999 888999
Q ss_pred EecchHHHhcCCCCccEEEEeC
Q 027409 100 IVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa 121 (223)
+.-|-++.....+.||-+.||-
T Consensus 101 Lqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 101 LQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred eeeeccchhccCCeEeeEEecC
Confidence 9998887666667899999994
No 221
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.36 E-value=0.0092 Score=52.41 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=72.0
Q ss_pred HHHHHHHHHHh-----cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 29 VAELLSAMAAG-----WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 29 ~g~fL~~L~~~-----~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+-.||.-|... .+..+.|+.|+|+|-.+-. +. .+-=-+|.-+|+.++.++.|++++... +.. .++..-
T Consensus 38 S~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~--lL---l~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~ 111 (218)
T PF05891_consen 38 SRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKG--LL---LPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCV 111 (218)
T ss_dssp HHHHHHCCCT---------SEEEEET-TTTHHHHH--TC---CCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES
T ss_pred HHHHHHHHHhhcccCCCCcceEEecccccchhHHH--HH---HHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEec
Confidence 46677766655 3688999999999984333 21 233358999999999999999998874 334 555555
Q ss_pred chHHHhcCCCCccEEEEeCC-----CcccHHHHHHhc-cCCCceEEEE-eCCCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCT-----SKDFARVLRFAR-FSNKGAVLAF-KNAFQRS 151 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~-----K~~Y~~~f~~~~-~l~~GgvIV~-DNvl~~g 151 (223)
--.+.-|.-..||+|.+==- -++..+||.-|+ -|+|||+||. +|+-..+
T Consensus 112 gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 112 GLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp -GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred CHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 55555565458999998521 234577888774 4677777765 6776555
No 222
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.36 E-value=0.075 Score=48.83 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=88.4
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+.....+-+.-|...-+|-+||.|-||.|- +-+ =|....+. .-.|.-.|.++..++..++.+++- |++ ++|..
T Consensus 119 l~~~i~~ai~~L~~~g~pvrIlDIAaG~GR--Yvl-Dal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~-gL~~i~~f~~ 194 (311)
T PF12147_consen 119 LEELIRQAIARLREQGRPVRILDIAAGHGR--YVL-DALEKHPERPDSILLRDYSPINVEKGRALIAER-GLEDIARFEQ 194 (311)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCCcH--HHH-HHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc-CCccceEEEe
Confidence 344445555566667799999999999885 322 22222222 248999999999999999999999 999 59999
Q ss_pred cchHH--HhcCCC-CccEEEEeCCCcccHH------HHHHh-ccCCCceEEEEeCCCCCC
Q 027409 102 RQAEE--VMGELK-GVDFLVVDCTSKDFAR------VLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~e--vL~~L~-~fDfVFIDa~K~~Y~~------~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
|||.+ .+..++ ..+++.+-+==+.+++ .+.-+ ..+.|||.+|.-|--|+.
T Consensus 195 ~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP 254 (311)
T PF12147_consen 195 GDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP 254 (311)
T ss_pred cCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc
Confidence 99976 577775 5899998764333322 23222 456999999999976655
No 223
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.25 E-value=0.032 Score=51.20 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh---cCC--CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM---GEL--KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL---~~L--~~fD 115 (223)
....+|+-..|.| +-|.+++.+. + +|+|+.+|.|++.++.|++.++.+ +-.++++.++=.++. ..+ +++|
T Consensus 20 ~ggiyVD~TlG~G--GHS~~iL~~l-~-~g~vigiD~D~~Al~~ak~~L~~~-~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFG--GHSKAILEQL-G-TGRLIGIDRDPQAIAFAKERLSDF-EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CCCEEEEeCCCCh--HHHHHHHHhC-C-CCEEEEEcCCHHHHHHHHHHHhhc-CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 3457888876666 3676777654 3 499999999999999999999876 545999999987654 333 3699
Q ss_pred EEEEeCCCccc
Q 027409 116 FLVVDCTSKDF 126 (223)
Q Consensus 116 fVFIDa~K~~Y 126 (223)
.|+.|-.-+.+
T Consensus 95 gIl~DLGvSS~ 105 (305)
T TIGR00006 95 GILVDLGVSSP 105 (305)
T ss_pred EEEEeccCCHh
Confidence 99999765544
No 224
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.01 E-value=0.13 Score=36.63 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=64.3
Q ss_pred HHhcCCCe-EEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH-hcCCC-
Q 027409 37 AAGWNAKL-IVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV-MGELK- 112 (223)
Q Consensus 37 ~~~~~ak~-ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev-L~~L~- 112 (223)
........ ++++||+.|. .+ .++ ........++.+|.++.+...++...... +.. +.++.+|.... ++-..
T Consensus 43 ~~~~~~~~~~ld~~~g~g~--~~-~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (257)
T COG0500 43 LRLLPGGLGVLDIGCGTGR--LA-LLA-RLGGRGAYVVGVDLSPEMLALARARAEGA-GLGLVDFVVADALGGVLPFEDS 117 (257)
T ss_pred hhhccCCCeeEEecCCcCH--HH-HHH-HhCCCCceEEEEeCCHHHHHHHHhhhhhc-CCCceEEEEeccccCCCCCCCC
Confidence 33444444 9999999997 33 222 12222247888999999888866554333 444 68888888773 44333
Q ss_pred -CccEEEEeCCCccc---HHHHHHh-ccCCCceEEEEeCCC
Q 027409 113 -GVDFLVVDCTSKDF---ARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 113 -~fDfVFIDa~K~~Y---~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.||++ .-..-.++ ...+..+ +.++++|.++.....
T Consensus 118 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 118 ASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 69999 44333222 4555544 566777876665543
No 225
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.99 E-value=0.054 Score=47.16 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=68.7
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-----EEEEecchHHHhc-----CCCC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-----SEVIVRQAEEVMG-----ELKG 113 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-----I~li~GdA~evL~-----~L~~ 113 (223)
+|||||+|+|- =+.++|.+. +.-+-.+-|.+++...--+...+++ |++ +.+=.-+.-.-.. .-..
T Consensus 28 ~vLEiaSGtGq--Ha~~FA~~l--P~l~WqPSD~~~~~~~sI~a~~~~~-~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQ--HAVYFAQAL--PHLTWQPSDPDDNLRPSIRAWIAEA-GLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccH--HHHHHHHHC--CCCEEcCCCCChHHHhhHHHHHHhc-CCcccCCCeEeecCCCCCccccccccCCCC
Confidence 59999999997 666777543 3567888999999877777888887 776 3332222211111 1137
Q ss_pred ccEEEEe-----CCCcccHHHHHHh-ccCCCceEEEEeCCCC-CC
Q 027409 114 VDFLVVD-----CTSKDFARVLRFA-RFSNKGAVLAFKNAFQ-RS 151 (223)
Q Consensus 114 fDfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~-~g 151 (223)
||.||.= +--+.-..+|... +.|++||+++..-=|. .|
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDG 147 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCC
Confidence 9999963 2233446677644 7789999999988764 44
No 226
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.96 E-value=0.039 Score=51.98 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=72.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhcCC-CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~L-~~fDf 116 (223)
++-+|||.=+|+|. -+|-.|.-. +...+|+.-|+|++..+..++|++.- |++ |++..+||...|... ..||+
T Consensus 49 ~~~~~lDalaasGv--R~iRy~~E~-~~~~~v~~NDi~~~a~~~i~~N~~~N-~~~~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGV--RGIRYAKEL-AGVDKVTANDISPEAVELIKRNLELN-GLEDERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSH--HHHHHHHH--SSECEEEEEES-HHHHHHHHHHHHHC-T-SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccH--HHHHHHHHc-CCCCEEEEecCCHHHHHHHHHhHhhc-cccCceEEEehhhHHHHhhhccccCCE
Confidence 34499999999998 888777543 22358999999999999999999987 776 899999999999632 47999
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
|=||.- +-=..|++ +++.++.||+|-+--
T Consensus 125 IDlDPf-GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDPF-GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE--S-S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCC-CCccHhHHHHHHHhhcCCEEEEec
Confidence 988873 33357888 457779999987644
No 227
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.94 E-value=0.043 Score=47.96 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=77.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCC--cEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTC--ARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~--g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
+..|.-.-....|+-..+|..|+|+|+..|= |+||.|--+..-| -+++++|+|-.-.+.+..- .. |.|+
T Consensus 52 ~k~p~D~~~yQellw~~~P~lvIE~Gs~~GG--Sal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~ 123 (237)
T COG3510 52 IKSPSDMWNYQELLWELQPSLVIEFGSRHGG--SALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFI 123 (237)
T ss_pred cCCHHHHHHHHHHHHhcCCceeEeeccccCc--hhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEE
Confidence 5678888888899999999999999999885 8999886444333 5888888876543322111 23 8999
Q ss_pred ecchH-----HHhcCCC---CccEEEEeCCCc--ccHHHHHHhccC-CCceEEEEeC
Q 027409 101 VRQAE-----EVMGELK---GVDFLVVDCTSK--DFARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 101 ~GdA~-----evL~~L~---~fDfVFIDa~K~--~Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
+|+.. +.+..++ +-=||.+|++-. +-..-++++.++ ..|--+|+-+
T Consensus 124 egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 124 EGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred eCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 99853 3333342 455788888743 334455666654 6666555544
No 228
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.79 E-value=0.027 Score=49.93 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=47.5
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCc-----e-EEEEecchHHHhcCC-CC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGW-----V-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~-----~-I~li~GdA~evL~~L-~~ 113 (223)
+||+..+|-|- -++-+| +. |++||.+|.+|-.+..-+.-++++ ... . |+++.||+.+.|+.. ..
T Consensus 78 ~VLDaTaGLG~--Da~vlA-~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s 151 (234)
T PF04445_consen 78 SVLDATAGLGR--DAFVLA-SL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNS 151 (234)
T ss_dssp -EEETT-TTSH--HHHHHH-HH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS-
T ss_pred EEEECCCcchH--HHHHHH-cc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCC
Confidence 89999888885 565555 22 689999999999988888776655 122 1 999999999999932 48
Q ss_pred ccEEEEeCC
Q 027409 114 VDFLVVDCT 122 (223)
Q Consensus 114 fDfVFIDa~ 122 (223)
||.|.+|--
T Consensus 152 ~DVVY~DPM 160 (234)
T PF04445_consen 152 FDVVYFDPM 160 (234)
T ss_dssp -SEEEE--S
T ss_pred CCEEEECCC
Confidence 999999963
No 229
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.63 E-value=0.058 Score=51.73 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=76.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC-CC-CccEEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE-LK-GVDFLVV 119 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~-L~-~fDfVFI 119 (223)
.|||+.=++-|= =|..+| |.|.+.|.|+..|.|..++..-+.|+.+. |+. ..+...|+.|.=.+ +. .||=|++
T Consensus 243 ERIlDmcAAPGG--KTt~IA-alMkn~G~I~AnD~n~~r~~~l~~n~~rl-Gv~ntiv~n~D~~ef~~~~~~~~fDRVLL 318 (460)
T KOG1122|consen 243 ERILDMCAAPGG--KTTHIA-ALMKNTGVIFANDSNENRLKSLKANLHRL-GVTNTIVSNYDGREFPEKEFPGSFDRVLL 318 (460)
T ss_pred CeecchhcCCCc--hHHHHH-HHHcCCceEEecccchHHHHHHHHHHHHh-CCCceEEEccCcccccccccCcccceeee
Confidence 589999777774 555666 56777899999999999999999999999 999 77788888753212 33 6999999
Q ss_pred eCCCcc---------------------c----HHHHH-HhccCCCceEEEEeC
Q 027409 120 DCTSKD---------------------F----ARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 120 Da~K~~---------------------Y----~~~f~-~~~~l~~GgvIV~DN 146 (223)
||--+. | .++|. ++.++++||+||.--
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 985443 1 23343 457789999999754
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.053 Score=47.23 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=63.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH-----HHhc-CCC-
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE-----EVMG-ELK- 112 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~-----evL~-~L~- 112 (223)
+...|+++|++-| +....|......+++|+.||++|-. -.. |.++.||.. +-|. .++
T Consensus 45 ~~~~ViDLGAAPG---gWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 45 PGMVVVDLGAAPG---GWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred CCCEEEEcCCCCC---cHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCC
Confidence 5699999999988 4445543445567889999998863 222 677777764 3333 343
Q ss_pred -CccEEEEeCCC--------cccHHHH------HHh-ccCCCceEEEEeCCCCCC
Q 027409 113 -GVDFLVVDCTS--------KDFARVL------RFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 113 -~fDfVFIDa~K--------~~Y~~~f------~~~-~~l~~GgvIV~DNvl~~g 151 (223)
++|+|.-|.++ ++|.... +.+ ..+++||..|+-..-.++
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 57999999998 5553221 211 466999999987554443
No 231
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.41 E-value=0.093 Score=46.35 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=72.3
Q ss_pred HHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc
Q 027409 33 LSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG 109 (223)
Q Consensus 33 L~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~ 109 (223)
|..++... +..++.+|||-=+| ..+.|.. ..+.-+.+..|+++--++.|++|+++. ++. |+.+.||.+..|.
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAY--Lp~~Lv~--~~~~~~~va~eV~~gpl~~a~~~v~~~-~l~~~i~vr~~dgl~~l~ 81 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAY--LPIYLVK--NNPASTAVAGEVVPGPLESAIRNVKKN-NLSERIDVRLGDGLAVLE 81 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhH--hHHHHHh--cCCcceEEEeecccCHHHHHHHHHHhc-CCcceEEEeccCCccccC
Confidence 44444444 33449999999999 7767653 344568999999999999999999999 998 9999999988877
Q ss_pred CCCCccEEEEeCCCccc-HHHHH
Q 027409 110 ELKGVDFLVVDCTSKDF-ARVLR 131 (223)
Q Consensus 110 ~L~~fDfVFIDa~K~~Y-~~~f~ 131 (223)
.-+.+|.+.|=+--+.- .+.++
T Consensus 82 ~~d~~d~ivIAGMGG~lI~~ILe 104 (226)
T COG2384 82 LEDEIDVIVIAGMGGTLIREILE 104 (226)
T ss_pred ccCCcCEEEEeCCcHHHHHHHHH
Confidence 54589999998754443 34444
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.34 E-value=0.037 Score=48.34 Aligned_cols=98 Identities=16% Similarity=0.042 Sum_probs=67.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
..+-|+|||.||+.|. -+|+-|++. -..++..|++|-..+..+-|-+.. |++|.+..-|..- +-..||+++
T Consensus 77 tVrgkrVLd~gagsgL--vaIAaa~aG---A~~v~a~d~~P~~~~ai~lNa~an-gv~i~~~~~d~~g---~~~~~Dl~L 147 (218)
T COG3897 77 TVRGKRVLDLGAGSGL--VAIAAARAG---AAEVVAADIDPWLEQAIRLNAAAN-GVSILFTHADLIG---SPPAFDLLL 147 (218)
T ss_pred ccccceeeecccccCh--HHHHHHHhh---hHHHHhcCCChHHHHHhhcchhhc-cceeEEeeccccC---CCcceeEEE
Confidence 4578999999999998 666655442 236999999999989999999988 9989988877654 224699887
Q ss_pred EeC---CCcccHHHHHHhccC--CCceEEEEe
Q 027409 119 VDC---TSKDFARVLRFARFS--NKGAVLAFK 145 (223)
Q Consensus 119 IDa---~K~~Y~~~f~~~~~l--~~GgvIV~D 145 (223)
.-- +|....+.......+ +...|+|.|
T Consensus 148 agDlfy~~~~a~~l~~~~~~l~~~g~~vlvgd 179 (218)
T COG3897 148 AGDLFYNHTEADRLIPWKDRLAEAGAAVLVGD 179 (218)
T ss_pred eeceecCchHHHHHHHHHHHHHhCCCEEEEeC
Confidence 632 344445555533333 444444444
No 233
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.26 E-value=0.084 Score=51.14 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHHhc-------CCCeEEEEccCcchHHHHHHHHHhcCC------CCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 26 ESGVAELLSAMAAGW-------NAKLIVEAWTHGGPITTSIGLAIAARH------TCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~-------~ak~ILEIGT~~Gys~Stl~la~A~~~------~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
++.+.+++.-++... ...+|||.+||+|- ..++++..... -.-.++++|+|++.+..|+.++...
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~--fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGR--LIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccH--HHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 344566665544321 45699999999996 44444433321 1246899999999999999999987
Q ss_pred cCc-eEEEEecchHHHh----cC-CCCccEEEEe
Q 027409 93 VGW-VSEVIVRQAEEVM----GE-LKGVDFLVVD 120 (223)
Q Consensus 93 ~G~-~I~li~GdA~evL----~~-L~~fDfVFID 120 (223)
+. .++++.+|-+... .. .+.||+|+--
T Consensus 87 -~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 87 -ALLEINVINFNSLSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred -CCCCceeeecccccccccccccccCcccEEEeC
Confidence 62 2777777765421 11 2479999753
No 234
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.17 E-value=0.052 Score=48.54 Aligned_cols=93 Identities=9% Similarity=-0.020 Sum_probs=63.4
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhc-----CCCCcEEEEEeCCchHHHHHHHHHHhhcCce---
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAA-----RHTCARHVCIVPDERSRLAYVKAMYDVVGWV--- 96 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~-----~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--- 96 (223)
-+++..+|+.-++...+..+|++-.||+|- .-++..... ......|+.+|+|+.....|+-|+.-. |..
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~--fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~~~~~ 106 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGG--FLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GIDNSN 106 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSH--HHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-THHCBG
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHH--HHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-cccccc
Confidence 355688999999977777899999999995 322222211 024578999999999999999998765 655
Q ss_pred EEEEecchHHHhcC--CCCccEEEEe
Q 027409 97 SEVIVRQAEEVMGE--LKGVDFLVVD 120 (223)
Q Consensus 97 I~li~GdA~evL~~--L~~fDfVFID 120 (223)
..+..||.+..-.. ...||+|+..
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~N 132 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGN 132 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE
T ss_pred ccccccccccccccccccccccccCC
Confidence 57999999865443 3579999876
No 235
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.98 E-value=0.078 Score=48.63 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=61.8
Q ss_pred cccChhHHHHHHHHhhcccC-----------CCCcHHH--HHHHHHHHHhcC--------CCeEEEEccCcchHHHHHHH
Q 027409 3 LVWSPDAASKAYIDTVKSCE-----------NIKESGV--AELLSAMAAGWN--------AKLIVEAWTHGGPITTSIGL 61 (223)
Q Consensus 3 ~~w~~~~a~~ayl~~l~~~~-----------~ii~p~~--g~fL~~L~~~~~--------ak~ILEIGT~~Gys~Stl~l 61 (223)
+.|+...|.+++-.+|.... ....|-- ..++..+.-+.. .-++|+||||.-.+|.- |
T Consensus 43 idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpL--L 120 (299)
T PF05971_consen 43 IDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPL--L 120 (299)
T ss_dssp S-TTSHHHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHH--H
T ss_pred EecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHH--H
Confidence 45777777666655554422 1233322 344444444333 24799999986544332 2
Q ss_pred HHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecch-HHHhcCC----CCccEEEE
Q 027409 62 AIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQA-EEVMGEL----KGVDFLVV 119 (223)
Q Consensus 62 a~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA-~evL~~L----~~fDfVFI 119 (223)
++...+=+.+..|+|++.++.|++|+++--+++ |+++.-+. ..++..+ +.|||...
T Consensus 121 --g~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 121 --GAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp --HHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred --hhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 222336689999999999999999998642566 88876543 3355554 35888875
No 236
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.18 Score=47.56 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=74.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCC-CccEEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELK-GVDFLVV 119 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~-~fDfVFI 119 (223)
+++|||-=+|+|. -+|-.|... +. +++-=|+||+..+.+++|.+.-.|.+++++.+||...|.++. .||+|=|
T Consensus 53 ~~~v~DalsatGi--RgIRya~E~---~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGI--RGIRYAVET---GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccch--hHhhhhhhc---CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec
Confidence 9999999999998 888876543 33 899999999999999999997513337888899999999874 6887666
Q ss_pred eCCCcccHHHHHH-hccCCCceEEEE
Q 027409 120 DCTSKDFARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K~~Y~~~f~~-~~~l~~GgvIV~ 144 (223)
|-- +.=.+|++. ++-.+.||++-.
T Consensus 128 DPF-GSPaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 128 DPF-GSPAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred CCC-CCCchHHHHHHHHhhcCCEEEE
Confidence 642 333568884 566777888753
No 237
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=94.90 E-value=0.088 Score=46.99 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHHHHHhcC--CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWN--AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~--ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
|..+-+..-|..|+ +-. +.-||+||||+|.|++. | ...+=..+.+|++|.|++.|.+ ++. +-+++.
T Consensus 32 IQ~em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~v--L----~~~Gh~wiGvDiSpsML~~a~~--~e~---egdlil 99 (270)
T KOG1541|consen 32 IQAEMAERALELLA-LPGPKSGLILDIGCGSGLSGSV--L----SDSGHQWIGVDISPSMLEQAVE--REL---EGDLIL 99 (270)
T ss_pred ehHHHHHHHHHHhh-CCCCCCcEEEEeccCCCcchhe--e----ccCCceEEeecCCHHHHHHHHH--hhh---hcCeee
Confidence 33444455555443 444 88999999999985553 2 2234458899999999999997 332 126788
Q ss_pred cchHHHhcCC-CCccEEEE--------eCCCccc------HHHHH-HhccCCCceEEEE
Q 027409 102 RQAEEVMGEL-KGVDFLVV--------DCTSKDF------ARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 102 GdA~evL~~L-~~fDfVFI--------Da~K~~Y------~~~f~-~~~~l~~GgvIV~ 144 (223)
+|--+-|+-- +.||=|.. .|+|+.. ..||. ++..+++|+--|.
T Consensus 100 ~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 8877777643 47997653 4555543 34566 4455666665443
No 238
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.88 E-value=0.1 Score=48.60 Aligned_cols=98 Identities=16% Similarity=0.006 Sum_probs=66.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
...-++|+=+|.| |..-.++.+|.|. +.+|+.+++++++.+.|++.=++. . |.....|..+.+++. ||+|+
T Consensus 164 ~~pG~~V~I~G~G-GlGh~avQ~Aka~---ga~Via~~~~~~K~e~a~~lGAd~-~--i~~~~~~~~~~~~~~--~d~ii 234 (339)
T COG1064 164 VKPGKWVAVVGAG-GLGHMAVQYAKAM---GAEVIAITRSEEKLELAKKLGADH-V--INSSDSDALEAVKEI--ADAII 234 (339)
T ss_pred CCCCCEEEEECCc-HHHHHHHHHHHHc---CCeEEEEeCChHHHHHHHHhCCcE-E--EEcCCchhhHHhHhh--CcEEE
Confidence 4456889999999 8877888888765 489999999999998888753332 1 333345566666653 99887
Q ss_pred EeCCCcccHHHHHHhccCCCceEEEEeCCC
Q 027409 119 VDCTSKDFARVLRFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 119 IDa~K~~Y~~~f~~~~~l~~GgvIV~DNvl 148 (223)
.=+. -..+-..++.|++||.+|.=-+.
T Consensus 235 ~tv~---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 235 DTVG---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ECCC---hhhHHHHHHHHhcCCEEEEECCC
Confidence 6554 22333455667667776665444
No 239
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.87 E-value=0.32 Score=43.47 Aligned_cols=113 Identities=17% Similarity=0.084 Sum_probs=62.0
Q ss_pred CCcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
.++|++.--=..++.-. .-|+||=+|=.= ..||++|.... ..+|+-+|+|+..++.-++.-++. |+.|+.+
T Consensus 24 ~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDD---LtSlA~al~~~--~~~I~VvDiDeRll~fI~~~a~~~-gl~i~~~ 97 (243)
T PF01861_consen 24 YATPETTLRRAALMAERGDLEGKRILFLGDDD---LTSLALALTGL--PKRITVVDIDERLLDFINRVAEEE-GLPIEAV 97 (243)
T ss_dssp -B-HHHHHHHHHHHHHTT-STT-EEEEES-TT----HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHH-T--EEEE
T ss_pred cccHHHHHHHHHHHHhcCcccCCEEEEEcCCc---HHHHHHHhhCC--CCeEEEEEcCHHHHHHHHHHHHHc-CCceEEE
Confidence 46776543322333333 469999999763 35777775443 468999999999999999999998 9999999
Q ss_pred ecchHHHhcC-C-CCccEEEEeCC-CcccHHHH-H-HhccC-CCceEE
Q 027409 101 VRQAEEVMGE-L-KGVDFLVVDCT-SKDFARVL-R-FARFS-NKGAVL 142 (223)
Q Consensus 101 ~GdA~evL~~-L-~~fDfVFIDa~-K~~Y~~~f-~-~~~~l-~~GgvI 142 (223)
.-|..+-||. + +.||.+|.|-- --+=...| . .+.-| .+|+.+
T Consensus 98 ~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~g 145 (243)
T PF01861_consen 98 HYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAG 145 (243)
T ss_dssp ---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EE
T ss_pred EecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceE
Confidence 9999999986 5 68999999963 11113333 2 44444 566544
No 240
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.86 E-value=0.043 Score=49.46 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=90.0
Q ss_pred HHHHHHH-hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EE--EEec----
Q 027409 32 LLSAMAA-GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SE--VIVR---- 102 (223)
Q Consensus 32 fL~~L~~-~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~--li~G---- 102 (223)
-|..|=. ...++.+|+|||-.|. .|+.+|.--.+ -.|.++|+|+..++.|+++++.....+ +. ++.+
T Consensus 48 rLk~L~~~~f~~~~~LDIGCNsG~--lt~~iak~F~~--r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDIGCNSGF--LTLSIAKDFGP--RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred hhhhccccccCcceeEeccCCcch--hHHHHHHhhcc--ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 3444422 3489999999999998 88888764432 369999999999999999988651122 11 0000
Q ss_pred -------------------------------chHHHhcCC--CCccEEEEe---------CCCcccHHHHHHh-ccCCCc
Q 027409 103 -------------------------------QAEEVMGEL--KGVDFLVVD---------CTSKDFARVLRFA-RFSNKG 139 (223)
Q Consensus 103 -------------------------------dA~evL~~L--~~fDfVFID---------a~K~~Y~~~f~~~-~~l~~G 139 (223)
+-.+.| .+ ..||.|+.= -.-+.-.++|..+ .++.||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 011122 11 257777642 1223447888755 778999
Q ss_pred eEEEEeCCCCCCcc-------ccccccccccccCCCceEEEEeecCCceEEEEEcc
Q 027409 140 AVLAFKNAFQRSTS-------GLRWQGQGVLDRGTRVVRSVFLPVGQGLDIVHVGS 188 (223)
Q Consensus 140 gvIV~DNvl~~g~~-------~~~~~~r~~v~~~~~~~~t~lLPiGDGl~vs~k~~ 188 (223)
|++|..-==|.... ....+..++. -..+.++..++-++-|++-+....
T Consensus 203 GiLvvEPQpWksY~kaar~~e~~~~ny~~i~-lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 203 GILVVEPQPWKSYKKAARRSEKLAANYFKIF-LKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred cEEEEcCCchHHHHHHHHHHHHhhcCcccee-cCHHHHHhhhhhhhhheeeecccc
Confidence 99998764443320 0111110011 123447777788888887766543
No 241
>PRK13699 putative methylase; Provisional
Probab=94.73 E-value=0.045 Score=47.85 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=35.2
Q ss_pred EEEEecchHHHhcCC--CCccEEEEeC--------------CCcccHHHH----H-HhccCCCceEEEE
Q 027409 97 SEVIVRQAEEVMGEL--KGVDFLVVDC--------------TSKDFARVL----R-FARFSNKGAVLAF 144 (223)
Q Consensus 97 I~li~GdA~evL~~L--~~fDfVFIDa--------------~K~~Y~~~f----~-~~~~l~~GgvIV~ 144 (223)
++++.||++|+|+.| +.+|+||.|- ....|.+++ . ..+.|++||+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 478999999999999 4899999992 123344444 3 2367788998875
No 242
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=94.66 E-value=0.15 Score=47.24 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=62.7
Q ss_pred CCCeEEEEccCcchHHHHH-HHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh-------h---cCceEEEEecchHH-Hh
Q 027409 41 NAKLIVEAWTHGGPITTSI-GLAIAARHTCARHVCIVPDERSRLAYVKAMYD-------V---VGWVSEVIVRQAEE-VM 108 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl-~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~-------a---~G~~I~li~GdA~e-vL 108 (223)
+..+||++|||=|- -.. |.. + .=+.++.+|++++.++.|++-++. . .....+++.+|+.. .|
T Consensus 62 ~~~~VLDl~CGkGG--DL~Kw~~-~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG--DLQKWQK-A---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESL 135 (331)
T ss_dssp TT-EEEEET-TTTT--THHHHHH-T---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHH
T ss_pred CCCeEEEecCCCch--hHHHHHh-c---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchh
Confidence 67899999999773 232 432 2 136899999999999999999832 1 01238999999963 33
Q ss_pred cC-C--C--CccEEEEeCCCccc--------HHHHHHh-ccCCCceEEEEe
Q 027409 109 GE-L--K--GVDFLVVDCTSKDF--------ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 109 ~~-L--~--~fDfVFIDa~K~~Y--------~~~f~~~-~~l~~GgvIV~D 145 (223)
.. + . +||+|=+=-. -+| ..++..+ ..|+|||+.|.-
T Consensus 136 ~~~~~~~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 136 REKLPPRSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp HCTSSSTTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhhccccCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 32 3 2 7998865431 233 4466654 678999998753
No 243
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.52 E-value=0.033 Score=44.65 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=36.3
Q ss_pred eEEEEecchHHHhcCCC-CccEEEEeCC-C----ccc-HHHHHHh-ccCCCceEEEEeCC
Q 027409 96 VSEVIVRQAEEVMGELK-GVDFLVVDCT-S----KDF-ARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 96 ~I~li~GdA~evL~~L~-~fDfVFIDa~-K----~~Y-~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.+++..|||.+.|+++. .||.+|.|+- + +.+ .++|..+ +.+++||++++-.+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~ 91 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS 91 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec
Confidence 38899999999999984 8999999973 2 222 6677755 56699999988654
No 244
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.11 Score=50.89 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCcHHHHHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
++.-..++.|+-++.-. .=+-+|++=||+|. +++++|.. =++|+-||++|+..+.|++|=+.- |++ .+
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~--iglala~~----~~~ViGvEi~~~aV~dA~~nA~~N-gisNa~ 434 (534)
T KOG2187|consen 362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGT--IGLALARG----VKRVIGVEISPDAVEDAEKNAQIN-GISNAT 434 (534)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCc--eehhhhcc----ccceeeeecChhhcchhhhcchhc-Ccccee
Confidence 44455677777766532 33677899999997 77777632 368999999999999999999998 999 99
Q ss_pred EEecchHHHhcCC-C----Ccc-EEEEeCC-CcccHHHHHHhcc
Q 027409 99 VIVRQAEEVMGEL-K----GVD-FLVVDCT-SKDFARVLRFARF 135 (223)
Q Consensus 99 li~GdA~evL~~L-~----~fD-fVFIDa~-K~~Y~~~f~~~~~ 135 (223)
||.|.|.++++.| + .=+ .+.||-. ++-...+...++-
T Consensus 435 Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~ 478 (534)
T KOG2187|consen 435 FIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRA 478 (534)
T ss_pred eeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHh
Confidence 9999999999987 3 235 7888865 6666777776643
No 245
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.43 E-value=0.39 Score=43.23 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=58.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.-++||=+|++ |.+..++.+|.+. +. +|+.++.++++.+.|++ . |.. +.....+..+.+...+.+|+|
T Consensus 169 ~g~~VlV~G~G-~vG~~aiqlak~~---G~~~Vi~~~~~~~~~~~a~~----l-Ga~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVG-PIGCLIVAAVKTL---GAAEIVCADVSPRSLSLARE----M-GADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHH----c-CCcEEecCCcccHHHHhccCCCCCEE
Confidence 34788888863 6655666666543 44 68899999998888765 3 543 333333433433322359987
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
| |+--. ...++ .+..+++||.++.=..
T Consensus 240 i-d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 240 F-EVSGH--PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred E-ECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 6 66432 22343 4566788898876543
No 246
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.95 E-value=0.46 Score=42.13 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=58.5
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc--CC-CCccE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG--EL-KGVDF 116 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~--~L-~~fDf 116 (223)
-.+||=+|.+.|..-| .++.- ..++|.|+++|.+|.. .|+.+.-| .-. |--|.+||..=-. .+ +..|+
T Consensus 74 gskVLYLGAasGTTVS--HvSDI-vg~~G~VYaVEfs~r~---~rdL~~la-~~R~NIiPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVS--HVSDI-VGPDGVVYAVEFSPRS---MRDLLNLA-KKRPNIIPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp T-EEEEETTTTSHHHH--HHHHH-HTTTSEEEEEESSHHH---HHHHHHHH-HHSTTEEEEES-TTSGGGGTTTS--EEE
T ss_pred CCEEEEecccCCCccc--hhhhc-cCCCCcEEEEEecchh---HHHHHHHh-ccCCceeeeeccCCChHHhhcccccccE
Confidence 4699999999997444 34332 3568999999999864 33443333 222 6778899974222 22 68999
Q ss_pred EEEeCC-CcccHHHHHHh-ccCCCceEEE
Q 027409 117 LVVDCT-SKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 117 VFIDa~-K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
||.|-+ ++|-.-+...+ ..|++||.++
T Consensus 147 I~~DVaQp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 147 IFQDVAQPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp EEEE-SSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEecCCChHHHHHHHHHHHhhccCCcEEE
Confidence 999965 55555444555 4567777554
No 247
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=93.42 E-value=0.59 Score=43.96 Aligned_cols=95 Identities=16% Similarity=0.024 Sum_probs=62.0
Q ss_pred CCcHHHHHHHHHHHHh----------cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc
Q 027409 24 IKESGVAELLSAMAAG----------WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV 93 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~----------~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~ 93 (223)
..+..+-.+..++... ..-+++|+||++.|- .|-.|+ ..+++|++||..+- +.. +.
T Consensus 184 apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGG--WT~~L~----~rG~~V~AVD~g~l----~~~-L~--- 249 (357)
T PRK11760 184 APSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGG--WTYQLV----RRGMFVTAVDNGPM----AQS-LM--- 249 (357)
T ss_pred CCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcH--HHHHHH----HcCCEEEEEechhc----CHh-hh---
Confidence 4455555555554433 456799999999994 553443 23679999995542 222 22
Q ss_pred Cce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh
Q 027409 94 GWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA 133 (223)
Q Consensus 94 G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~ 133 (223)
... |+.+.+|+....+.-.++|+++.|.. +.-.+..+++
T Consensus 250 ~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-e~P~rva~lm 289 (357)
T PRK11760 250 DTGQVEHLRADGFKFRPPRKNVDWLVCDMV-EKPARVAELM 289 (357)
T ss_pred CCCCEEEEeccCcccCCCCCCCCEEEEecc-cCHHHHHHHH
Confidence 223 99999999998875568999999985 2333455555
No 248
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.29 E-value=0.37 Score=45.64 Aligned_cols=76 Identities=13% Similarity=0.002 Sum_probs=56.9
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeC-------C----CcccHHHHHHh-ccC
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDC-------T----SKDFARVLRFA-RFS 136 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa-------~----K~~Y~~~f~~~-~~l 136 (223)
++++.|+|+.+++.||.|-++| |+. |+|..+|+...=+.++.+|+|..+- . ...|..+.+.+ +.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~A-Gv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAA-GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhc-CCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999 999 9999999988544457789888872 1 23677777666 445
Q ss_pred CC--ceEEEEeCC
Q 027409 137 NK--GAVLAFKNA 147 (223)
Q Consensus 137 ~~--GgvIV~DNv 147 (223)
+. -.|++++--
T Consensus 335 ~~ws~~v~tt~e~ 347 (381)
T COG0116 335 AGWSRYVFTTSED 347 (381)
T ss_pred cCCceEEEEccHH
Confidence 32 244444443
No 249
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.28 E-value=0.27 Score=45.37 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH---HhcCC--CCccEEEEeCCCccc
Q 027409 57 TSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE---VMGEL--KGVDFLVVDCTSKDF 126 (223)
Q Consensus 57 Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e---vL~~L--~~fDfVFIDa~K~~Y 126 (223)
-|=++... .+..|+++.+|.||+.++.|++.+..+ +-.+.++.+.=.+ .++.+ ..+|-|++|-.-+.+
T Consensus 37 HS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~~-~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 37 HSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKEF-DGRVTLVHGNFANLAEALKELGIGKVDGILLDLGVSSP 109 (314)
T ss_pred hHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhcc-CCcEEEEeCcHHHHHHHHHhcCCCceeEEEEeccCCcc
Confidence 33345433 455689999999999999999999998 7668999886544 44444 379999999765544
No 250
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=93.09 E-value=0.35 Score=43.23 Aligned_cols=118 Identities=15% Similarity=0.021 Sum_probs=71.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
...+....++..+.+.+.... +.. |.+|- ++|.......-+++.+|..|+..+.=+++|... -+|+++.+|
T Consensus 41 ~~p~~l~~yl~~v~~~n~~~~---l~~---YPGSP-~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~D 111 (245)
T PF04378_consen 41 DLPPALQPYLDAVRALNPDGE---LRF---YPGSP-AIAARLLREQDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRD 111 (245)
T ss_dssp GS-GGGHHHHHHHHHHSSSSS-----E---EE-HH-HHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-
T ss_pred cchHHHHHHHHHHHHhccCCC---cCc---CCCCH-HHHHHhCCccceEEEEecCchHHHHHHHHhccC--CccEEEeCc
Confidence 345556778888777764443 333 34466 444444444569999999999999888888764 239999999
Q ss_pred hHHHhcCC-CCcc---EEEEeC---CCcccHHHHHHhc----cCCCceEEEEeCCCCC
Q 027409 104 AEEVMGEL-KGVD---FLVVDC---TSKDFARVLRFAR----FSNKGAVLAFKNAFQR 150 (223)
Q Consensus 104 A~evL~~L-~~fD---fVFIDa---~K~~Y~~~f~~~~----~l~~GgvIV~DNvl~~ 150 (223)
+.+.|..+ .+-. |||||- .|..|.+..+.+. .-+.|-++|=-=++.+
T Consensus 112 G~~~l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~ 169 (245)
T PF04378_consen 112 GYEGLKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDR 169 (245)
T ss_dssp HHHHHHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSH
T ss_pred hhhhhhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccH
Confidence 99987764 5555 999997 7999999988662 2266666665555443
No 251
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.73 E-value=0.46 Score=46.27 Aligned_cols=89 Identities=17% Similarity=0.055 Sum_probs=61.4
Q ss_pred hHHHHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCe--------EEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc
Q 027409 8 DAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKL--------IVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE 79 (223)
Q Consensus 8 ~~a~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~--------ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~ 79 (223)
|-|.-.|++-|..-++.+ .-.+.+=.....+|. +|.||||+|. .++.-+.| . .-.+|.||.-.
T Consensus 29 elArSsy~DMl~D~dRNi----ky~~gi~~tIte~kh~~~~gkv~vLdigtGTGL--LSmMAvra-g--aD~vtA~Evfk 99 (636)
T KOG1501|consen 29 ELARSSYLDMLNDSDRNI----KYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGL--LSMMAVRA-G--ADSVTACEVFK 99 (636)
T ss_pred HHHHhhHHHHhhcccccH----HHHHHHHHHhcccceeccCceEEEEEccCCccH--HHHHHHHh-c--CCeEEeehhhc
Confidence 456667777776655432 233334444555665 5999999997 66443333 2 23699999999
Q ss_pred hHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 80 RSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 80 e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
.+.+.||+...+. |.+ |++|.-..-|
T Consensus 100 PM~d~arkI~~kn-g~SdkI~vInkrSte 127 (636)
T KOG1501|consen 100 PMVDLARKIMHKN-GMSDKINVINKRSTE 127 (636)
T ss_pred hHHHHHHHHHhcC-CCccceeeeccccce
Confidence 9999999999999 988 8887654443
No 252
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.66 E-value=1.3 Score=38.88 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=59.5
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--C
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--K 112 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~ 112 (223)
.+...-++||=.|.+.|.+..++.+|.+. +.+++.+..++++.+.+++ . |.. +.....+..+.+..+ .
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~---G~~vi~~~~s~~~~~~l~~----~-Ga~~vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK---GCKVIGCAGSDDKVAWLKE----L-GFDAVFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH----c-CCCEEEeCCCccHHHHHHHHCCC
Confidence 33445578888886656654666676543 6789989988887766654 4 554 433333444444433 3
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
.+|.|| |+--. ..++ .++.++++|.++.
T Consensus 211 gvd~vl-d~~g~---~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 211 GIDCYF-DNVGG---EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CcEEEE-ECCCH---HHHHHHHHhhccCCEEEE
Confidence 699776 87544 3343 4566777777764
No 253
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.48 E-value=1.4 Score=40.04 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=59.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec-chHHHhcCC--CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR-QAEEVMGEL--KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G-dA~evL~~L--~~f 114 (223)
..-.+||=.|.+.|.+..++.+|++. +.+++.++.++++.+.+++ +. |.. |..... +..+.+.++ ..+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~~~~~~k~~~~~~---~l-Ga~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH---GCYVVGSAGSSQKVDLLKN---KL-GFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHH---hc-CCCEEEECCCcccHHHHHHHHCCCCc
Confidence 34578999998766654666676542 6789999988887665542 24 654 443323 444555543 369
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|.|| |+--. ..++ .+..+++||.++.
T Consensus 230 D~v~-d~vG~---~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 230 DIYF-DNVGG---DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred EEEE-ECCCH---HHHHHHHHHhccCCEEEE
Confidence 9876 77543 2444 4566788887774
No 254
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.14 E-value=0.15 Score=42.00 Aligned_cols=103 Identities=12% Similarity=-0.016 Sum_probs=56.9
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE----------------
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI---------------- 100 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li---------------- 100 (223)
+...+|.+|+=+|.|.= +..++.++.+ -+.+++.+|.+++..+..+.++... +.+.
T Consensus 15 ~~~~~p~~vvv~G~G~v-g~gA~~~~~~---lGa~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPPAKVVVTGAGRV-GQGAAEIAKG---LGAEVVVPDERPERLRQLESLGAYF----IEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T-EEEEESTSHH-HHHHHHHHHH---TT-EEEEEESSHHHHHHHHHTTTEE----SEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCCeEEEEECCCHH-HHHHHHHHhH---CCCEEEeccCCHHHHHhhhcccCce----EEEcccccccccccchhhhh
Confidence 34568999999998642 2234444443 2689999999988766655544333 4552
Q ss_pred ---ecchHHHhcCCCCccEEEEeC--CCcccHHHH--HHhccCCCceEEEEeCCC
Q 027409 101 ---VRQAEEVMGELKGVDFLVVDC--TSKDFARVL--RFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 101 ---~GdA~evL~~L~~fDfVFIDa--~K~~Y~~~f--~~~~~l~~GgvIV~DNvl 148 (223)
.......-+.+.++|+|.+-+ +...++.++ +.++.+++|.+| +|=..
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvI-vDis~ 140 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVI-VDISC 140 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEE-EETTG
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceE-EEEEe
Confidence 222222222235799999765 677888888 356666766555 45443
No 255
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=92.11 E-value=0.45 Score=35.52 Aligned_cols=23 Identities=9% Similarity=-0.109 Sum_probs=14.6
Q ss_pred HHHHHHhcCCCeEEEEccCcchH
Q 027409 33 LSAMAAGWNAKLIVEAWTHGGPI 55 (223)
Q Consensus 33 L~~L~~~~~ak~ILEIGT~~Gys 55 (223)
....-...+||+||-||+++||+
T Consensus 30 vk~~~~~~GpK~VLViGaStGyG 52 (78)
T PF12242_consen 30 VKSQGKINGPKKVLVIGASTGYG 52 (78)
T ss_dssp HHHC---TS-SEEEEES-SSHHH
T ss_pred HHhcCCCCCCceEEEEecCCccc
Confidence 33333447899999999999995
No 256
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.08 E-value=0.56 Score=42.14 Aligned_cols=86 Identities=9% Similarity=0.033 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcC-CCeEEEEccCcchHHHHH-HHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 27 SGVAELLSAMAAGWN-AKLIVEAWTHGGPITTSI-GLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 27 p~~g~fL~~L~~~~~-ak~ILEIGT~~Gys~Stl-~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
|.--+|...+....+ |.+|+.||||.=- .++ ||. .+++...+.+|+|....+.-..++... |...++...|-
T Consensus 90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNP--lalp~~~---~~~~a~Y~a~DID~~~ve~l~~~l~~l-~~~~~~~v~Dl 163 (251)
T PF07091_consen 90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNP--LALPWMP---EAPGATYIAYDIDSQLVEFLNAFLAVL-GVPHDARVRDL 163 (251)
T ss_dssp GGHHHHHHHHCCCS---SEEEEET-TTCH--HHHHTTT---SSTT-EEEEEESBHHHHHHHHHHHHHT-T-CEEEEEE-T
T ss_pred hhHHHHHHHHHhcCCCCchhhhhhccCCc--eehhhcc---cCCCcEEEEEeCCHHHHHHHHHHHHhh-CCCcceeEeee
Confidence 334567776666654 9999999998643 444 553 345679999999999999999999998 88866666655
Q ss_pred HHHhcCCCCccEEEE
Q 027409 105 EEVMGELKGVDFLVV 119 (223)
Q Consensus 105 ~evL~~L~~fDfVFI 119 (223)
+.-.+. ...|+.++
T Consensus 164 ~~~~~~-~~~DlaLl 177 (251)
T PF07091_consen 164 LSDPPK-EPADLALL 177 (251)
T ss_dssp TTSHTT-SEESEEEE
T ss_pred eccCCC-CCcchhhH
Confidence 443222 36888886
No 257
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.04 E-value=0.35 Score=38.11 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=26.6
Q ss_pred EEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH
Q 027409 47 EAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA 88 (223)
Q Consensus 47 EIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~ 88 (223)
+||...|...++++++.+...++++|+++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 689999932366665433455689999999999999998888
No 258
>PRK11524 putative methyltransferase; Provisional
Probab=91.99 E-value=0.21 Score=44.77 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=35.1
Q ss_pred EEEEecchHHHhcCC--CCccEEEEeCC----C-----------cccHH----HHHHh-ccCCCceEEEEe
Q 027409 97 SEVIVRQAEEVMGEL--KGVDFLVVDCT----S-----------KDFAR----VLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 97 I~li~GdA~evL~~L--~~fDfVFIDa~----K-----------~~Y~~----~f~~~-~~l~~GgvIV~D 145 (223)
.+++.||+++.+..+ +.||+||+|-- + +.|.. +|..+ +.|++||.++.-
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 588999999999888 37999999942 1 22433 34433 677888888764
No 259
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.99 E-value=1.5 Score=38.98 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=57.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfV 117 (223)
++||=.|.+.|.+..++.+|.+. +. +|+.+..++++.+.+++. . |.. +.....+-.+.+.++ ..+|+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~---G~~~Vi~~~~s~~~~~~~~~~---l-Ga~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL---GCSRVVGICGSDEKCQLLKSE---L-GFDAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHh---c-CCcEEEECCCCCHHHHHHHHCCCCceEE
Confidence 68999987666644666666542 55 799999988876666552 4 554 333333434444443 369988
Q ss_pred EEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 118 VVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 118 FIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
| |+.-... .-+.+..+++||.+|.
T Consensus 229 i-d~~g~~~--~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 229 F-DNVGGEI--SDTVISQMNENSHIIL 252 (345)
T ss_pred E-ECCCcHH--HHHHHHHhccCCEEEE
Confidence 6 8754432 2235566788888774
No 260
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=91.66 E-value=1.9 Score=40.17 Aligned_cols=123 Identities=10% Similarity=-0.027 Sum_probs=75.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC-CchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP-DERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~-d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+.+|=..+++..+++..+=+++| . +++.++.+...++.+|++.+. .+.........+.+. |++++++..
T Consensus 47 ~~~p~~~~Le~~la~l~g~~~al~~~SG--~--~Al~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~-gi~v~~vd~ 121 (380)
T PRK06176 47 SGNPTRFALEELIADLEGGVKGFAFASG--L--AGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKN-GLSCTIIDT 121 (380)
T ss_pred CCChhHHHHHHHHHHHhCCCCEEEECCH--H--HHHHHHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhc-CeEEEEcCC
Confidence 5678899999999999988888766554 3 333333344566778888654 333344445556666 887666655
Q ss_pred chHHHhcC-CC-CccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGE-LK-GVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~-L~-~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+.+ +. +..+||+..- ......=++.+ ... +.|.+||+||.+..+
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~ 176 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATP 176 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 44444443 43 6889998542 21112113333 333 668999999997543
No 261
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=91.65 E-value=0.55 Score=44.47 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=63.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH-hcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV-MGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev-L~~L~~fDfV 117 (223)
+-|-||++|+|.|. .++.-|.| .-.+|+.+|-+ ++++-|++.++.- .+. |.+|-|...|+ || ++.|.+
T Consensus 177 ~~kiVlDVGaGSGI--LS~FAaqA---GA~~vYAvEAS-~MAqyA~~Lv~~N-~~~~rItVI~GKiEdieLP--Ek~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGI--LSFFAAQA---GAKKVYAVEAS-EMAQYARKLVASN-NLADRITVIPGKIEDIELP--EKVDVI 247 (517)
T ss_pred CCcEEEEecCCccH--HHHHHHHh---CcceEEEEehh-HHHHHHHHHHhcC-CccceEEEccCccccccCc--hhccEE
Confidence 56889999999996 55443332 12479999985 8899999999987 676 99999988773 33 478877
Q ss_pred EEeCCCccc----HHHHHHh----ccCCCceE
Q 027409 118 VVDCTSKDF----ARVLRFA----RFSNKGAV 141 (223)
Q Consensus 118 FIDa~K~~Y----~~~f~~~----~~l~~Ggv 141 (223)
.-. +-.| .+.+|.+ +-++|.|-
T Consensus 248 ISE--PMG~mL~NERMLEsYl~Ark~l~P~Gk 277 (517)
T KOG1500|consen 248 ISE--PMGYMLVNERMLESYLHARKWLKPNGK 277 (517)
T ss_pred Eec--cchhhhhhHHHHHHHHHHHhhcCCCCc
Confidence 643 4455 3444422 44566664
No 262
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.62 E-value=1.1 Score=36.91 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=53.5
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC--CccEEEEe------CCCccc------HHHHH-Hh
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK--GVDFLVVD------CTSKDF------ARVLR-FA 133 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~--~fDfVFID------a~K~~Y------~~~f~-~~ 133 (223)
+|+..|+.++.++.+++.++++ |+. |+++...=.++..-++ ++|++... +||.-- ..-++ ++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc-CCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 6899999999999999999999 887 9999888777555553 69998876 444433 44555 34
Q ss_pred ccCCCceEEEEeCCCCCC
Q 027409 134 RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 134 ~~l~~GgvIV~DNvl~~g 151 (223)
.+|++||+|+. |.+.|
T Consensus 80 ~lL~~gG~i~i--v~Y~G 95 (140)
T PF06962_consen 80 ELLKPGGIITI--VVYPG 95 (140)
T ss_dssp HHEEEEEEEEE--EE--S
T ss_pred HhhccCCEEEE--EEeCC
Confidence 67799999987 44443
No 263
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=91.57 E-value=0.85 Score=42.82 Aligned_cols=102 Identities=15% Similarity=0.052 Sum_probs=66.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc------CceEEEEecchHH-HhcC-
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV------GWVSEVIVRQAEE-VMGE- 110 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~------G~~I~li~GdA~e-vL~~- 110 (223)
+.+...++++|||-|= -.+-+-.|.. +.+++||+.+-.++.|++-+++.. -.+++|+.||... -|.+
T Consensus 115 ~~~~~~~~~LgCGKGG--DLlKw~kAgI---~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGG--DLLKWDKAGI---GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred hccccccceeccCCcc--cHhHhhhhcc---cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 4577889999999883 4443333432 689999999999998887665431 2238999999954 4444
Q ss_pred C---CC-ccEEEEe-----CC--CcccHHHHH-HhccCCCceEEEEe
Q 027409 111 L---KG-VDFLVVD-----CT--SKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 111 L---~~-fDfVFID-----a~--K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+ ++ ||+|=.- |. -++-...+. .+..|+|||+.|.-
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 3 34 8876332 11 112233343 55788999998863
No 264
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.36 E-value=0.44 Score=36.01 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--HhcCC--CCccEEEEeCCCcccHHHH-
Q 027409 57 TSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMGEL--KGVDFLVVDCTSKDFARVL- 130 (223)
Q Consensus 57 Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~~L--~~fDfVFIDa~K~~Y~~~f- 130 (223)
.+..++..... ++ .++-||.|++..+.+++ . | +.++.||+.+ +|.+. +..|.|++..+.+..--..
T Consensus 9 ~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~----~-~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 9 IGREIAEQLKE-GGIDVVVIDRDPERVEELRE----E-G--VEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp HHHHHHHHHHH-TTSEEEEEESSHHHHHHHHH----T-T--SEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCEEEEEECCcHHHHHHHh----c-c--cccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 55566666555 56 89999999998666543 3 4 4789999964 77765 5899999998755443222
Q ss_pred HHhccCCCceEEE
Q 027409 131 RFARFSNKGAVLA 143 (223)
Q Consensus 131 ~~~~~l~~GgvIV 143 (223)
..++.+.+..-|+
T Consensus 81 ~~~r~~~~~~~ii 93 (116)
T PF02254_consen 81 LLARELNPDIRII 93 (116)
T ss_dssp HHHHHHTTTSEEE
T ss_pred HHHHHHCCCCeEE
Confidence 3345444443333
No 265
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=91.29 E-value=0.82 Score=42.79 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=72.4
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE--
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV-- 119 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI-- 119 (223)
-+..|++|-|+|- .+-.... .-+ +|--|+.|...+..++.++. - | |+.+.||-++-+| +=|.||+
T Consensus 178 v~~avDvGgGiG~---v~k~ll~-~fp--~ik~infdlp~v~~~a~~~~-~-g--V~~v~gdmfq~~P---~~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGR---VLKNLLS-KYP--HIKGINFDLPFVLAAAPYLA-P-G--VEHVAGDMFQDTP---KGDAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhH---HHHHHHH-hCC--CCceeecCHHHHHhhhhhhc-C-C--cceecccccccCC---CcCeEEEEe
Confidence 5889999999985 3322222 222 48888999999999999998 6 7 7889999887655 4668886
Q ss_pred ---eCCCcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 120 ---DCTSKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 120 ---Da~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
|=.-++..++|+-| .-+ ..|.|||.|||....
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e 281 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEE 281 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Confidence 55567788899866 445 677888999998753
No 266
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.18 E-value=0.23 Score=37.97 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--CccEEEEeCCCcccHHHHH
Q 027409 57 TSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--GVDFLVVDCTSKDFARVLR 131 (223)
Q Consensus 57 Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~fDfVFIDa~K~~Y~~~f~ 131 (223)
.++.+|++. +++|+.++.++++.+.++++ |.. +.....|..+.+.++ + ++|.|| ||.- ....++
T Consensus 5 ~a~q~ak~~---G~~vi~~~~~~~k~~~~~~~-----Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vi-d~~g--~~~~~~ 73 (130)
T PF00107_consen 5 MAIQLAKAM---GAKVIATDRSEEKLELAKEL-----GADHVIDYSDDDFVEQIRELTGGRGVDVVI-DCVG--SGDTLQ 73 (130)
T ss_dssp HHHHHHHHT---TSEEEEEESSHHHHHHHHHT-----TESEEEETTTSSHHHHHHHHTTTSSEEEEE-ESSS--SHHHHH
T ss_pred HHHHHHHHc---CCEEEEEECCHHHHHHHHhh-----cccccccccccccccccccccccccceEEE-EecC--cHHHHH
Confidence 677777653 48999999999988777653 433 444455567777665 2 699776 5543 345676
Q ss_pred -HhccCCCceEEEEeCCCC
Q 027409 132 -FARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 132 -~~~~l~~GgvIV~DNvl~ 149 (223)
.+..+++||.++.=-+..
T Consensus 74 ~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 74 EAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHEEEEEEEEEESSTS
T ss_pred HHHHHhccCCEEEEEEccC
Confidence 446678889988877665
No 267
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=91.18 E-value=1.4 Score=32.13 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=51.5
Q ss_pred EEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhccC-CCceEE-EE
Q 027409 72 HVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARFS-NKGAVL-AF 144 (223)
Q Consensus 72 i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~l-~~GgvI-V~ 144 (223)
|.-+|.++...+..++.++.. |+. +. ...++.+.+..+ ..||+|++|..-. ...++++.++.. +...+| ++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~-~~~~v~-~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA-GYEEVT-TASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-TEEEEE-EESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhC-CCCEEE-EECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEec
Confidence 456899999999999999988 995 54 667787777766 3799999997544 445666666433 333444 44
Q ss_pred eC
Q 027409 145 KN 146 (223)
Q Consensus 145 DN 146 (223)
++
T Consensus 79 ~~ 80 (112)
T PF00072_consen 79 DE 80 (112)
T ss_dssp SS
T ss_pred CC
Confidence 33
No 268
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.18 E-value=0.59 Score=41.85 Aligned_cols=87 Identities=15% Similarity=0.073 Sum_probs=46.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-----HHhh-cCce---EEEEecchHHHhcCC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-----MYDV-VGWV---SEVIVRQAEEVMGEL 111 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-----~~~a-~G~~---I~li~GdA~evL~~L 111 (223)
+.++|||+|+|+|.. ++..|+. .+..+++-|. ++....-+.+ .+-. +|.+ ..+.-|+|......+
T Consensus 86 ~~~~vlELGsGtglv--G~~aa~~---~~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~ 159 (248)
T KOG2793|consen 86 KYINVLELGSGTGLV--GILAALL---LGAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL 159 (248)
T ss_pred cceeEEEecCCccHH--HHHHHHH---hcceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc
Confidence 688999999999983 4333322 2344544443 2222222222 2222 2434 566778887766555
Q ss_pred CC-ccEEEE-eC--CCcccHHHHHHh
Q 027409 112 KG-VDFLVV-DC--TSKDFARVLRFA 133 (223)
Q Consensus 112 ~~-fDfVFI-Da--~K~~Y~~~f~~~ 133 (223)
+. ||+|+. |+ ..+.+......+
T Consensus 160 ~~~~DlilasDvvy~~~~~e~Lv~tl 185 (248)
T KOG2793|consen 160 PNPFDLILASDVVYEEESFEGLVKTL 185 (248)
T ss_pred CCcccEEEEeeeeecCCcchhHHHHH
Confidence 55 777764 33 233444444444
No 269
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.99 E-value=0.34 Score=44.72 Aligned_cols=82 Identities=16% Similarity=0.031 Sum_probs=50.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch---HHHhcCC---CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA---EEVMGEL---KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA---~evL~~L---~~ 113 (223)
.+...+|+-.-|. ++-|-++..+. + +|+|+.+|.||+.++.|++.++.+ +-.+.++.++= .+.|..+ ..
T Consensus 19 ~~~g~~vD~T~G~--GGHS~aiL~~~-~-~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 19 KPGGIYVDCTFGG--GGHSKAILEKL-P-NGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp -TT-EEEETT-TT--SHHHHHHHHT--T-T-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred CCCceEEeecCCc--HHHHHHHHHhC-C-CCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCc
Confidence 3444566643333 34565776543 3 399999999999999999998877 55577777654 4455544 47
Q ss_pred ccEEEEeCCCccc
Q 027409 114 VDFLVVDCTSKDF 126 (223)
Q Consensus 114 fDfVFIDa~K~~Y 126 (223)
+|.|++|-.-+.+
T Consensus 94 ~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 94 VDGILFDLGVSSM 106 (310)
T ss_dssp EEEEEEE-S--HH
T ss_pred cCEEEEccccCHH
Confidence 9999999875544
No 270
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.96 E-value=1 Score=42.11 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=53.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
..+++|+=||+| +.+..++..+ ..-+.+|+-+|+++++.+.+...+ |..+.....+..+....+..+|+|+.
T Consensus 165 l~~~~VlViGaG-~vG~~aa~~a---~~lGa~V~v~d~~~~~~~~l~~~~----g~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEPGDVTIIGGG-VVGTNAAKMA---NGLGATVTILDINIDRLRQLDAEF----GGRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCCceEEEEcCC-HHHHHHHHHH---HHCCCeEEEEECCHHHHHHHHHhc----CceeEeccCCHHHHHHHHccCCEEEE
Confidence 467889999996 2222332332 333678999999988766554433 32233333333222223467999987
Q ss_pred eCC--CcccHHHH--HHhccCCCceEEEE
Q 027409 120 DCT--SKDFARVL--RFARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~--K~~Y~~~f--~~~~~l~~GgvIV~ 144 (223)
-+- ....+.++ +.+..+++|++||.
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 541 22233333 24455688876553
No 271
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=90.94 E-value=4.7 Score=37.24 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=63.4
Q ss_pred HHHhcCCC-eEEEEccCcchHHHHHHHHHhcCC--CCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHH--
Q 027409 36 MAAGWNAK-LIVEAWTHGGPITTSIGLAIAARH--TCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEV-- 107 (223)
Q Consensus 36 L~~~~~ak-~ILEIGT~~Gys~Stl~la~A~~~--~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~ev-- 107 (223)
+++..++. .|+|+|||.|. =+--|..+..+ ...+-+.||++.+.++.|.+.+... .++ |.-+.||=.+-
T Consensus 70 Ia~~i~~~~~lIELGsG~~~--Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-~~p~l~v~~l~gdy~~~l~ 146 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLR--KVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-NFSHVRCAGLLGTYDDGLA 146 (319)
T ss_pred HHHhcCCCCEEEEECCCchH--HHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-cCCCeEEEEEEecHHHHHh
Confidence 34444444 79999999885 33333333322 2357889999999999999999943 344 55588876554
Q ss_pred -hcC--C-CCccEEEEe-CCCccc-----HHHHHHh-c-cCCCce-EEE
Q 027409 108 -MGE--L-KGVDFLVVD-CTSKDF-----ARVLRFA-R-FSNKGA-VLA 143 (223)
Q Consensus 108 -L~~--L-~~fDfVFID-a~K~~Y-----~~~f~~~-~-~l~~Gg-vIV 143 (223)
|+. . ....++|.= ..=+|+ ..++..+ + .++||+ +||
T Consensus 147 ~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 147 WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 432 2 234555444 344444 4666655 4 465544 444
No 272
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.84 E-value=2.4 Score=37.47 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=62.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHh--cCC-CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVM--GEL-KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL--~~L-~~f 114 (223)
..-.+||=+|.+.|...|- .+. .-.+|+|+++|.++..- ++.+.-+ --. |==|.+||.--- ..+ +..
T Consensus 75 ~~g~~VLYLGAasGTTvSH--VSD--Iv~~G~iYaVEfs~R~~---reLl~~a-~~R~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSH--VSD--IVGEGRIYAVEFSPRPM---RELLDVA-EKRPNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred CCCCEEEEeeccCCCcHhH--HHh--ccCCCcEEEEEecchhH---HHHHHHH-HhCCCceeeecccCCcHHhhhhcccc
Confidence 3467999999999975554 332 22379999999998754 4444433 222 667889997422 233 689
Q ss_pred cEEEEeCCCcccHHHH-HHh-ccCCCce-EEEE
Q 027409 115 DFLVVDCTSKDFARVL-RFA-RFSNKGA-VLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f-~~~-~~l~~Gg-vIV~ 144 (223)
|.||.|-+..+=.+.+ ... ..|++|| ++++
T Consensus 147 Dviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 147 DVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 9999997755555555 444 4565554 4443
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.81 E-value=0.26 Score=48.12 Aligned_cols=96 Identities=7% Similarity=0.079 Sum_probs=51.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHH-hhcCceEEEEecc-hHHHhcCC-CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMY-DVVGWVSEVIVRQ-AEEVMGEL-KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~-~a~G~~I~li~Gd-A~evL~~L-~~fDf 116 (223)
.+-+.+|+||||+|- .+-.| .+.+-...|+-.+... .++..|+ +- |+. .+.|- +..-|+-- ..||+
T Consensus 116 g~iR~~LDvGcG~aS--F~a~l----~~r~V~t~s~a~~d~~--~~qvqfaleR-Gvp--a~~~~~~s~rLPfp~~~fDm 184 (506)
T PF03141_consen 116 GGIRTALDVGCGVAS--FGAYL----LERNVTTMSFAPNDEH--EAQVQFALER-GVP--AMIGVLGSQRLPFPSNAFDM 184 (506)
T ss_pred CceEEEEeccceeeh--hHHHH----hhCCceEEEcccccCC--chhhhhhhhc-Ccc--hhhhhhccccccCCccchhh
Confidence 566899999999873 33233 2334344455555443 3444444 33 554 11111 12334433 37999
Q ss_pred E-----EEeCCCcccHHHHHHhccCCCceEEEEeC
Q 027409 117 L-----VVDCTSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 117 V-----FIDa~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
| .|+-...+=.-+||.=+.|||||..|-..
T Consensus 185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred hhcccccccchhcccceeehhhhhhccCceEEecC
Confidence 8 33332222222345558899999988766
No 274
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.74 E-value=1.6 Score=39.77 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDF 116 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDf 116 (223)
-++||=.|++ +.+..++.+|++ .+. +|+.++.++++.+.|++ . |.. +.....+..+.+.++ ..+|+
T Consensus 192 g~~VlV~G~G-~vG~~a~~lak~---~G~~~Vi~~~~~~~r~~~a~~----~-Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 192 GQSVAVVGLG-GVGLSALLGAVA---AGASQVVAVDLNEDKLALARE----L-GATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCEEEEECCC-HHHHHHHHHHHH---cCCCcEEEEcCCHHHHHHHHH----c-CCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4678888853 543344455543 355 69999999998887764 4 554 333333444545444 26997
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|| |+-- ....++ .++.+++||.++.
T Consensus 263 vi-d~~G--~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AF-EMAG--SVPALETAYEITRRGGTTVT 288 (371)
T ss_pred EE-ECCC--ChHHHHHHHHHHhcCCEEEE
Confidence 75 7652 223443 4566677777664
No 275
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=90.35 E-value=4.6 Score=37.17 Aligned_cols=121 Identities=8% Similarity=0.020 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC-CchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP-DERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~-d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-+|...+|=..|++..++...+= ++.|. .++.++.+...++.+|++.+. .+......+..++.. |..+.++..
T Consensus 49 ~~~pt~~~le~~la~l~g~~~~~~--~~sG~--~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~-G~~v~~vd~ 123 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGGDQGFA--CSSGM--AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKW-NVRFVYVNT 123 (366)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEE--EcCHH--HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhcc-CceEEEECC
Confidence 457788999999999999887644 44454 344444444455667776654 333445566667777 888555543
Q ss_pred -chHHHhcCC-CCccEEEEeC--CCcccHHHHHHh-ccC-CCceEEEEeCCCC
Q 027409 103 -QAEEVMGEL-KGVDFLVVDC--TSKDFARVLRFA-RFS-NKGAVLAFKNAFQ 149 (223)
Q Consensus 103 -dA~evL~~L-~~fDfVFIDa--~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~ 149 (223)
|..++...+ ++-++||+.. ++.....-++.+ ... +.|.+||+||++.
T Consensus 124 ~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 124 ASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred CCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 333333334 3678999854 222222334433 333 6689999999974
No 276
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=90.21 E-value=2.9 Score=40.05 Aligned_cols=124 Identities=13% Similarity=0.025 Sum_probs=90.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEE-eCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCI-VPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TI-E~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|..-.+=..++++.+++..|=.-+|-. +++.++. ...+.+++|++. +..-..+...++...++ |..+.++..
T Consensus 74 ~~nPt~~~le~~iaal~ga~~~l~fsSGma--A~~~al~-~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~-gie~~~vd~ 149 (409)
T KOG0053|consen 74 SGNPTRDVLESGIAALEGAAHALLFSSGMA--AITVALL-HLLPAGDHIVATGDVYGGTLRILRKFLPKF-GGEGDFVDV 149 (409)
T ss_pred CCCCchHHHHHHHHHHhCCceEEEecccHH--HHHHHHH-HhcCCCCcEEEeCCCcccHHHHHHHHHHHh-Cceeeeech
Confidence 345666777788999999999888755532 2333332 335677888776 56677788888888888 999999998
Q ss_pred chHHHhcCC-C-CccEEEEeCCCcccHHHHH--Hh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGEL-K-GVDFLVVDCTSKDFARVLR--FA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~L-~-~fDfVFIDa~K~~Y~~~f~--~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+-+... + .-++||+-.----+.+..+ .+ ++. ++|-+||+||.|...
T Consensus 150 ~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 150 DDLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred hhHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence 888866654 4 4999999986555555543 23 443 999999999998766
No 277
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.12 E-value=2 Score=38.86 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=58.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--C
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--G 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~ 113 (223)
..-++||=.|+ .+.+..++.+|.+ .+. +|+.++.++++.+.|++ . |.. +.....+..+.+.++ + .
T Consensus 175 ~~g~~VlV~G~-g~vG~~a~~~ak~---~G~~~Vi~~~~~~~~~~~~~~----~-Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 175 KRGDSVAVIGC-GGVGDAAIAGAAL---AGASKIIAVDIDDRKLEWARE----F-GATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHH----c-CCceEEcCCCcCHHHHHHHHhCCCC
Confidence 34578888886 3554455556554 255 59999999998887754 4 554 444444555555543 2 5
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+|+|| |+--.. ..++ .+..+++||.+|.=
T Consensus 246 ~d~vi-d~~g~~--~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 246 ADVVI-DAVGRP--ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCEEE-ECCCCH--HHHHHHHHHhccCCEEEEE
Confidence 99765 875432 2333 45666888887753
No 278
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.10 E-value=2.6 Score=36.94 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=53.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fD 115 (223)
..-.+||-.|++ +.+..++.+|.+ .+.+++.++.++++.+.+++ . |.. +.....+..+.+..+ ..+|
T Consensus 164 ~~~~~vli~g~g-~vG~~~~~la~~---~G~~V~~~~~s~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 164 KPGETVLVIGLG-GLGLNAVQIAKA---MGAAVIAVDIKEEKLELAKE----L-GADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHH----h-CCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 344678887764 333355566543 36789999999887766654 4 654 333333444444222 3699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
. ++|+--. ...++ .++.+++||.++.
T Consensus 235 ~-vid~~g~--~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 235 V-IFDFVGT--QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred E-EEECCCC--HHHHHHHHHHhhcCCEEEE
Confidence 5 5676422 23444 4466777777764
No 279
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.08 E-value=3.6 Score=36.37 Aligned_cols=94 Identities=13% Similarity=0.038 Sum_probs=57.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec-chHHHhcCC--CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR-QAEEVMGEL--KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G-dA~evL~~L--~~f 114 (223)
..-.+||=.|.+.|.+..++.+|++ .+.+++.+..++++.+.+++ . |.. +..... +..+.+..+ ..+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~---~G~~Vi~~~~s~~~~~~~~~----l-Ga~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKL---KGCKVVGAAGSDEKVAYLKK----L-GFDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH----c-CCCEEEeccccccHHHHHHHhCCCCe
Confidence 3446888888665554455566554 36788888888887666643 4 654 333322 333444443 369
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|.|| |+--.. .++ .+..+++||.+|.-
T Consensus 209 dvv~-d~~G~~---~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYF-DNVGGE---FSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEE-ECCCHH---HHHHHHHHhCcCcEEEEe
Confidence 9877 876432 334 55677888888853
No 280
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.04 E-value=5 Score=34.57 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=56.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~fDf 116 (223)
....++||=.|.+.+.+..++.+|.+ .+.+|+.+..+++..+.++ +. |.. +-...++..+.+.++ .++|+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~---~g~~v~~~~~~~~~~~~~~----~~-g~~~~~~~~~~~~~~i~~~~~~~d~ 211 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKA---LGATVTATTRSPERAALLK----EL-GADEVVIDDGAIAEQLRAAPGGFDK 211 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHH----hc-CCcEEEecCccHHHHHHHhCCCceE
Confidence 44567899888755544466666654 3678998888887765553 34 664 211133444444444 36998
Q ss_pred EEEeCCCcccHHHH-HHhccCCCceEEEE
Q 027409 117 LVVDCTSKDFARVL-RFARFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f-~~~~~l~~GgvIV~ 144 (223)
+| |+... ..+ +.++.++++|.++.
T Consensus 212 vl-~~~~~---~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 212 VL-ELVGT---ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred EE-ECCCh---HHHHHHHHHhccCCEEEE
Confidence 87 77654 234 35566666776663
No 281
>PRK08114 cystathionine beta-lyase; Provisional
Probab=89.90 E-value=9.2 Score=36.23 Aligned_cols=123 Identities=12% Similarity=0.019 Sum_probs=79.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHH-HhcCCCCcEEEEEe-CCchHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLA-IAARHTCARHVCIV-PDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la-~A~~~~~g~i~TIE-~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+..|=..|+.+-++...+=..+ |. ++|..+ .+...++.+|++.+ .....+...++.+++. |+++.++.
T Consensus 59 ~~nPt~~~le~~la~LEg~~~a~~~~S--Gm--aAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~-Gi~v~~vd 133 (395)
T PRK08114 59 RGTLTHFSLQEAMCELEGGAGCALYPC--GA--AAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKL-GVTTTWFD 133 (395)
T ss_pred CCChhHHHHHHHHHHHhCCCeEEEEhH--HH--HHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhc-CcEEEEEC
Confidence 568888999999999999999988877 44 333321 13345567777654 4445667777778888 99877765
Q ss_pred cchHHHhcC-CC-CccEEEEeCCCcccHHHH------HHhccCCCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-LK-GVDFLVVDCTSKDFARVL------RFARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L~-~fDfVFIDa~K~~Y~~~f------~~~~~l~~GgvIV~DNvl~~g 151 (223)
..-.+.+.+ ++ +-.+||++.--..-.... +.++...+|.++|+||.+.-+
T Consensus 134 ~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p 191 (395)
T PRK08114 134 PLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAG 191 (395)
T ss_pred CCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 433343443 43 578999997544332222 222332357999999998644
No 282
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.86 E-value=4.2 Score=36.26 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=58.7
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec-chHHHhcCC--CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR-QAEEVMGEL--KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G-dA~evL~~L--~~ 113 (223)
...-++||=.|.+.|.+..++.+|.+ .+.+++.+..++++.+.+++. . |.. +..-.. +..+.+.++ ..
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~---~G~~Vi~~~~~~~~~~~~~~~---l-Ga~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKL---KGCYVVGSAGSDEKVDLLKNK---L-GFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHh---c-CCceeEEcCCcccHHHHHHHhCCCC
Confidence 34457899889866664455666654 367888888888877766543 3 544 332222 334444433 37
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
+|+|| |+--. ..++ .+..++++|.++.
T Consensus 222 vd~v~-d~~g~---~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 222 IDIYF-DNVGG---KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred cEEEE-ECCCH---HHHHHHHHHhccCcEEEE
Confidence 99887 87543 2343 5566777888774
No 283
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.78 E-value=5.6 Score=36.07 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=46.2
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEecchHHHhcCCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
+|.-||+ |+.+++++++.+.......|+-+|+++++.+....-+..+... . ..+..+|- +. +..-|+|||=+
T Consensus 2 kI~IIGa--G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~---l~~aDiViita 75 (308)
T cd05292 2 KVAIVGA--GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-AD---CKGADVVVITA 75 (308)
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HH---hCCCCEEEEcc
Confidence 4778898 5677888777665433358999999998776322223333011 1 44445553 32 45789999987
Q ss_pred CC
Q 027409 122 TS 123 (223)
Q Consensus 122 ~K 123 (223)
..
T Consensus 76 ~~ 77 (308)
T cd05292 76 GA 77 (308)
T ss_pred CC
Confidence 64
No 284
>PLN02827 Alcohol dehydrogenase-like
Probab=89.71 E-value=3 Score=38.41 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=56.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC--
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL-- 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L-- 111 (223)
...-++||=.|++ +.+..++.+|.+. +. ++++++.++++.+.|++ . |.. |.... .+..+.+.++
T Consensus 191 ~~~g~~VlV~G~G-~vG~~~iqlak~~---G~~~vi~~~~~~~~~~~a~~----l-Ga~~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLG-TVGLSVAQGAKLR---GASQIIGVDINPEKAEKAKT----F-GVTDFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHH----c-CCcEEEcccccchHHHHHHHHHhC
Confidence 3446788888863 5544445555442 55 58899999888777744 4 654 33332 2344545443
Q ss_pred CCccEEEEeCCCcccHHHHHHhccCCCc-eEEEE
Q 027409 112 KGVDFLVVDCTSKDFARVLRFARFSNKG-AVLAF 144 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~~~~~l~~G-gvIV~ 144 (223)
..+|+|| |+.-.. ..+...+..+++| |.+|.
T Consensus 262 ~g~d~vi-d~~G~~-~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 262 GGADYSF-ECVGDT-GIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCCCEEE-ECCCCh-HHHHHHHHhhccCCCEEEE
Confidence 2699765 764321 1233456667787 88875
No 285
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.68 E-value=5.8 Score=35.47 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=55.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEEe-cchHHHhcCCCCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIV-RQAEEVMGELKGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li~-GdA~evL~~L~~fDfVF 118 (223)
++|-=||+ |+.+++++...+...-. .|+-+|++++..+....-+.+. .+...++.. +|- +.+ ..-|+||
T Consensus 3 ~KI~VIGa--G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~---~~aDiVi 75 (307)
T PRK06223 3 KKISIIGA--GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDI---AGSDVVV 75 (307)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHH---CCCCEEE
Confidence 57888998 55556776665543323 8999999998754322213332 011245543 443 333 4689999
Q ss_pred EeCCCcc----------------cHHHHHHhccC-CCceEEEEeC
Q 027409 119 VDCTSKD----------------FARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 119 IDa~K~~----------------Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
+-+.... +.++++.+... +++-+|++-|
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9764322 34444444444 4444777777
No 286
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=89.27 E-value=5.1 Score=36.20 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=47.4
Q ss_pred EEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce-EEEEe-cchHHHhcCCCCccEEEEeCCC
Q 027409 47 EAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV-SEVIV-RQAEEVMGELKGVDFLVVDCTS 123 (223)
Q Consensus 47 EIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~-I~li~-GdA~evL~~L~~fDfVFIDa~K 123 (223)
=||+ |+.+++++++.+..+--..|+-+|++++.++.-..-+.++ .... +++.. +| .+ .+..-|+|++-+..
T Consensus 3 iiGa--G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~---~l~~aDiVIitag~ 76 (300)
T cd00300 3 IIGA--GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YA---DAADADIVVITAGA 76 (300)
T ss_pred EECC--CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HH---HhCCCCEEEEcCCC
Confidence 3676 4567787777665443368999999999876666667766 1112 45553 44 33 44579999998875
Q ss_pred c
Q 027409 124 K 124 (223)
Q Consensus 124 ~ 124 (223)
.
T Consensus 77 p 77 (300)
T cd00300 77 P 77 (300)
T ss_pred C
Confidence 3
No 287
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=89.16 E-value=5.6 Score=35.16 Aligned_cols=92 Identities=14% Similarity=0.008 Sum_probs=53.5
Q ss_pred CCeEEEE-ccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 42 AKLIVEA-WTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 42 ak~ILEI-GT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
...+|=+ |.+.+.+..++.+|.+ .+.+++.++.++++.+.+++ . |.. +.....+..+.+.++ ..+|
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~---~G~~vi~~~~~~~~~~~~~~----~-g~~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKA---DGIKVINIVRRKEQVDLLKK----I-GAEYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH----c-CCcEEEECCCccHHHHHHHHhCCCCCc
Confidence 4455544 4443543355556544 36789999999988777765 4 654 444444554545443 2699
Q ss_pred EEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
+|| |+--... ....+..+++||.++.
T Consensus 215 ~vi-d~~g~~~--~~~~~~~l~~~G~~v~ 240 (324)
T cd08291 215 IFF-DAVGGGL--TGQILLAMPYGSTLYV 240 (324)
T ss_pred EEE-ECCCcHH--HHHHHHhhCCCCEEEE
Confidence 776 7653322 2334555677777655
No 288
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=89.06 E-value=2.9 Score=34.86 Aligned_cols=46 Identities=24% Similarity=0.230 Sum_probs=28.7
Q ss_pred hcCCCeEEEEccCcchH--HHHHHHHHhcCCCCcEEEEEeCCchHHHH
Q 027409 39 GWNAKLIVEAWTHGGPI--TTSIGLAIAARHTCARHVCIVPDERSRLA 84 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys--~Stl~la~A~~~~~g~i~TIE~d~e~~~~ 84 (223)
..++|.|.=.++-.|.+ +.+..||.+....+-++.-||.|+..-..
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l 61 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVM 61 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhH
Confidence 44567777666655543 34445555544556689999999866443
No 289
>PRK08064 cystathionine beta-lyase; Provisional
Probab=88.96 E-value=6.3 Score=36.77 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+.+|-..|+...+++..+=+++ |- ++|.++.....++.+|++.+.. +..+.......++. |..+.++.-
T Consensus 51 ~~~p~~~~le~~lA~l~g~~~~v~~~s--G~--~ai~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~-G~~v~~v~~ 125 (390)
T PRK08064 51 SGNPTREALEDIIAELEGGTKGFAFAS--GM--AAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRF-GIEHTFVDM 125 (390)
T ss_pred CCChhHHHHHHHHHHHhCCCCeEEECC--HH--HHHHHHHHHhCCCCEEEEccCccchHHHHHHHHHHHc-CCEEEEECC
Confidence 457889999999999998887655555 44 3444443233445677766542 22445555666777 888555543
Q ss_pred chHHHh-cCC-CCccEEEEeCCCccc--HHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVM-GEL-KGVDFLVVDCTSKDF--ARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL-~~L-~~fDfVFIDa~K~~Y--~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+ ..+ ++-++||+..--.-. ..-++.+ ... +.|.++|+||.+..+
T Consensus 126 ~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 180 (390)
T PRK08064 126 TNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTP 180 (390)
T ss_pred CCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcc
Confidence 323434 345 367899997532212 1122222 333 568899999986543
No 290
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.57 E-value=2.9 Score=41.07 Aligned_cols=100 Identities=12% Similarity=0.006 Sum_probs=59.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEe-------------c
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIV-------------R 102 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~-------------G 102 (223)
...+.+||=+|+|. .+-.++..|.+ -|++|+.+|+++++.+.|++. |-. ++... +
T Consensus 162 ~~pg~kVlViGaG~-iGL~Ai~~Ak~---lGA~V~a~D~~~~rle~aesl-----GA~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGV-AGLAAIGAAGS---LGAIVRAFDTRPEVAEQVESM-----GAEFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcH-HHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHc-----CCeEEEeccccccccccchhhhcch
Confidence 34799999999973 22244444433 367899999999999988873 433 22211 1
Q ss_pred chH----HHhcC-CCCccEEEEeCCCcc--cHHHH-H-HhccCCCceEEEEeCC
Q 027409 103 QAE----EVMGE-LKGVDFLVVDCTSKD--FARVL-R-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 103 dA~----evL~~-L~~fDfVFIDa~K~~--Y~~~f-~-~~~~l~~GgvIV~DNv 147 (223)
+-. +.+.+ +..+|.|+-=+.-.. .+..+ + .+..+++||+||.=-+
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 211 11222 246998865553222 34554 5 5567799998775433
No 291
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.51 E-value=4.6 Score=37.16 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=63.0
Q ss_pred eEEEEccCc-chHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec-chHHHhcCC-C--CccEEE
Q 027409 44 LIVEAWTHG-GPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR-QAEEVMGEL-K--GVDFLV 118 (223)
Q Consensus 44 ~ILEIGT~~-Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G-dA~evL~~L-~--~fDfVF 118 (223)
+|+=+|+|. |. .++.+|.. ..-.+|+.+|+++++++.|++.+... .+..... ++.+.+.++ . .+|++|
T Consensus 171 ~V~V~GaGpIGL--la~~~a~~--~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 171 TVVVVGAGPIGL--LAIALAKL--LGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred EEEEECCCHHHH--HHHHHHHH--cCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 799999962 22 33334332 22368999999999999999865433 0222222 455544443 2 699987
Q ss_pred EeCCCcccHHHHH-HhccCCCceEEEEeCCCCCC
Q 027409 119 VDCTSKDFARVLR-FARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 119 IDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g 151 (223)
-=+. .+..++ .+..+++||.|+.=-+..+.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 6554 565665 55777999999987776544
No 292
>PRK07671 cystathionine beta-lyase; Provisional
Probab=88.39 E-value=5.6 Score=36.95 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=75.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-+|.+.+|-..|+...+....+=+|+|.+ ++.++.+...++.+|++.+.. +..+....+.+++. |..+.++..
T Consensus 47 ~~~p~~~~Le~~lA~l~g~~~~~~~~sG~a----ai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~-G~~v~~v~~ 121 (377)
T PRK07671 47 TGNPTRAALEELIAVLEGGHAGFAFGSGMA----AITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRF-GIEHTFVDT 121 (377)
T ss_pred CCChHHHHHHHHHHHHhCCCceEEeCCHHH----HHHHHHHHhCCCCEEEECCCccchHHHHHHHHHhcC-CeEEEEECC
Confidence 568889999999999998888766666533 333333334456677766542 22445555566677 888666654
Q ss_pred -chHHHhcCC-CCccEEEEeCCCccc--HHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 -QAEEVMGEL-KGVDFLVVDCTSKDF--ARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 -dA~evL~~L-~~fDfVFIDa~K~~Y--~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
|..++...+ ++-.+||+..--.-+ ..-++.+ ... +.|..+|+||++..+
T Consensus 122 ~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 122 SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 344443445 367899986422112 2222333 333 678999999997543
No 293
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=88.23 E-value=0.87 Score=39.27 Aligned_cols=70 Identities=27% Similarity=0.193 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
++-..+-+..++-.+|+|||+-=. ..+..|...+..++++++.|..++.... +.+ --.+.||+.|+|++
T Consensus 154 ~~~~~~~~~~~~dl~lvlGTsl~v-~p~~~l~~~~~~~~~~~i~iN~~~~~~~------~~~----~~~i~g~~~~~l~~ 222 (224)
T cd01412 154 ALLEAVEALAKADLFLVIGTSGVV-YPAAGLPEEAKERGARVIEINPEPTPLS------PIA----DFAFRGKAGEVLPA 222 (224)
T ss_pred HHHHHHHHHHcCCEEEEECcCccc-hhHHHHHHHHHHCCCeEEEECCCCCCCC------CcC----CEEEECCHHHHHHH
Confidence 566677777899999999997221 1222333323346889999999877654 222 24677999999986
Q ss_pred C
Q 027409 111 L 111 (223)
Q Consensus 111 L 111 (223)
|
T Consensus 223 l 223 (224)
T cd01412 223 L 223 (224)
T ss_pred h
Confidence 4
No 294
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.21 E-value=3.4 Score=37.24 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=56.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec---chHHHhcCC---
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR---QAEEVMGEL--- 111 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G---dA~evL~~L--- 111 (223)
..-++||=+|+ .+.+..++.+|.+. +.+|+.++.++++.+.|++ . |.. |....- +..+.+.++
T Consensus 165 ~~g~~VlV~G~-G~vG~~a~~~a~~~---G~~vi~~~~~~~~~~~~~~----~-Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 165 KKGDLVIVIGA-GGVGGYMVQTAKAM---GAAVVAIDIDPEKLEMMKG----F-GADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHH----h-CCceEecCccccHHHHHHHHHhhccc
Confidence 34578999998 45444555665542 5689999999998877754 3 544 332222 233444443
Q ss_pred CCccE---EEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 112 KGVDF---LVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 112 ~~fDf---VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
..+|. +++|+.-. ...++ .+..+++||.++.
T Consensus 236 ~g~d~~~d~v~d~~g~--~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 236 RGLRSTGWKIFECSGS--KPGQESALSLLSHGGTLVV 270 (349)
T ss_pred CCCCCCcCEEEECCCC--hHHHHHHHHHHhcCCeEEE
Confidence 24662 67788743 33444 4566677887764
No 295
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.79 E-value=2.4 Score=38.01 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=51.4
Q ss_pred EEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-HHhh---cCceEEEEe-cchHHHhcCCCCccEEEEeC
Q 027409 47 EAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-MYDV---VGWVSEVIV-RQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 47 EIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-~~~a---~G~~I~li~-GdA~evL~~L~~fDfVFIDa 121 (223)
-||+ |+.+++++...+...-. .|+-+|+|++.. .+... +.++ .+...++.. +| .+. +..-|+|++=+
T Consensus 3 IIGa--G~vG~~ia~~la~~~l~-eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d-~~~---l~dADiVIit~ 74 (300)
T cd01339 3 IIGA--GNVGATLAQLLALKELG-DVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTND-YED---IAGSDVVVITA 74 (300)
T ss_pred EECC--CHHHHHHHHHHHhCCCc-EEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCC-HHH---hCCCCEEEEec
Confidence 4676 66677877766544333 899999998854 33322 3332 012245543 55 333 45689999955
Q ss_pred CC-------------cc---cHHHHHHhccC-CCceEEEEeC
Q 027409 122 TS-------------KD---FARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 122 ~K-------------~~---Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
.. ++ +.++++.+... +++-+|++-|
T Consensus 75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 31 12 23444444444 5666577777
No 296
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=87.70 E-value=8.4 Score=36.20 Aligned_cols=124 Identities=11% Similarity=0.015 Sum_probs=77.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEe-CCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIV-PDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE-~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-+|.+.+|-..|++..+++..|=.++|... ...++. +...++.+|++.+ .....+....+.++.. |..+.++..
T Consensus 67 ~~~p~~~~le~~lA~l~g~~~al~~~sG~~A--i~~~l~-all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~-G~~v~~vd~ 142 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGAEACFATASGMSA--VFTALG-ALLGAGDRLVAARSLFGSCFVVCNEILPRW-GVETVFVDG 142 (403)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECChHHH--HHHHHH-HHhCCCCEEEEccCCcchHHHHHHHHHHHc-CcEEEEECC
Confidence 4578889999999999999998877775432 222221 2344566777665 2334456666667777 988666655
Q ss_pred chHHHhcC-C-CCccEEEEeCCCcccHH--HHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGE-L-KGVDFLVVDCTSKDFAR--VLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~-L-~~fDfVFIDa~K~~Y~~--~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+.+ + +.-++|++..--..... -++.+ ... +.|.++|+||++..+
T Consensus 143 ~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 143 EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 43343443 4 35789998653222222 23333 333 568899999997644
No 297
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=87.65 E-value=8.3 Score=36.31 Aligned_cols=113 Identities=5% Similarity=0.036 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC--------chHHHHHHHHHHhhcCce-----
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD--------ERSRLAYVKAMYDVVGWV----- 96 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d--------~e~~~~Ar~~~~~a~G~~----- 96 (223)
...|..++....|++|+=||. |+ .++-+|......+.+|+-++.. ++..+..++.+++. |+.
T Consensus 136 ~~~l~~~l~~~~~~~vvViGg--G~--ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~-gI~i~~~~ 210 (438)
T PRK13512 136 TDAIDQFIKANQVDKALVVGA--GY--ISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKR-EIPYRLNE 210 (438)
T ss_pred HHHHHHHHhhcCCCEEEEECC--CH--HHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhc-CCEEEECC
Confidence 444444444457899999995 66 5666665555556678888764 34455666777777 765
Q ss_pred -EEEEecchHHHhcCC--CCccEEEEeCCCcccHHHHHHhcc-CCCceEEEEeCCC
Q 027409 97 -SEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARVLRFARF-SNKGAVLAFKNAF 148 (223)
Q Consensus 97 -I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f~~~~~-l~~GgvIV~DNvl 148 (223)
|+=+.++... +.+- -.+|+|++=..-.-..++++...+ +.++|.|.+|.-+
T Consensus 211 ~v~~i~~~~v~-~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~ 265 (438)
T PRK13512 211 EIDAINGNEVT-FKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKF 265 (438)
T ss_pred eEEEEeCCEEE-ECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCc
Confidence 2222232111 1111 159999987765544566765532 3444555556544
No 298
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=87.50 E-value=3.6 Score=38.80 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=79.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEe-CCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIV-PDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE-~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+..+=..|+.+-++..++=..||-+- .+.++. +...++.+|+... .........++.+.+. |+.+++...
T Consensus 52 ~gnPt~~~le~~la~Le~g~~a~~~~SGmaA--i~~~l~-~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~-gv~v~~~d~ 127 (386)
T PF01053_consen 52 YGNPTVRALEQRLAALEGGEDALLFSSGMAA--ISAALL-ALLKPGDHIVASDDLYGGTYRLLEELLPRF-GVEVTFVDP 127 (386)
T ss_dssp TC-HHHHHHHHHHHHHHT-SEEEEESSHHHH--HHHHHH-HHS-TTBEEEEESSSSHHHHHHHHHCHHHT-TSEEEEEST
T ss_pred cccccHHHHHHHHHHhhcccceeeccchHHH--HHHHHH-hhcccCCceEecCCccCcchhhhhhhhccc-CcEEEEeCc
Confidence 5689899999999999999999888765443 322222 3345566766554 4666777777777887 998888876
Q ss_pred chHHHhcC-C-CCccEEEEeCCCcccHHHH--HHh-ccC-CCc-eEEEEeCCCCCC
Q 027409 103 QAEEVMGE-L-KGVDFLVVDCTSKDFARVL--RFA-RFS-NKG-AVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~-L-~~fDfVFIDa~K~~Y~~~f--~~~-~~l-~~G-gvIV~DNvl~~g 151 (223)
+-.+.|.. + ++-++||+..--.--.+.. +.+ +.. +.| .++|+||.|...
T Consensus 128 ~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 128 TDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp TSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred hhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 54554543 4 3799999997433333333 333 333 566 999999987533
No 299
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.46 E-value=4.2 Score=37.37 Aligned_cols=76 Identities=13% Similarity=-0.059 Sum_probs=47.2
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc-hHHHhcCC---
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ-AEEVMGEL--- 111 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd-A~evL~~L--- 111 (223)
+...-.+||-+|++. .+..++.+|.+. + ++++.++.++++.+.+++.+ +.. +.....+ ..+.+..+
T Consensus 181 ~~~~g~~VlV~g~G~-vG~~~~~la~~~---g~~~vi~~~~~~~~~~~~~~~~----~~~vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 181 EVKPGDTVAVWGCGP-VGLFAARSAKLL---GAERVIAIDRVPERLEMARSHL----GAETINFEEVDDVVEALRELTGG 252 (386)
T ss_pred cCCCCCEEEEECCCH-HHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHcC----CcEEEcCCcchHHHHHHHHHcCC
Confidence 344557899999753 333566676553 3 46999999999988888753 223 4444443 44444433
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
..+|+| +|+-
T Consensus 253 ~~~D~v-ld~v 262 (386)
T cd08283 253 RGPDVC-IDAV 262 (386)
T ss_pred CCCCEE-EECC
Confidence 269966 5664
No 300
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.27 E-value=3 Score=40.99 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=54.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEe---------------c
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIV---------------R 102 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~---------------G 102 (223)
...+.++|=+|+| . .++..+..+..-++.|+.+|.++++.+.+++ . |.. +++-. .
T Consensus 161 ~vp~akVlViGaG--~--iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----l-Ga~~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 161 KVPPAKVLVIGAG--V--AGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----M-GAEFLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCCEEEEECCC--H--HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----c-CCeEEeccccccccccccceeecCH
Confidence 3567899999985 3 2222222223346788899999998777665 3 444 22211 1
Q ss_pred chH----HHhcC-CCCccEEEEeCC---CcccHHHH--HHhccCCCceEEE
Q 027409 103 QAE----EVMGE-LKGVDFLVVDCT---SKDFARVL--RFARFSNKGAVLA 143 (223)
Q Consensus 103 dA~----evL~~-L~~fDfVFIDa~---K~~Y~~~f--~~~~~l~~GgvIV 143 (223)
+-. +.+++ +..+|+| |.+. -...+.+. +.+..+++|++||
T Consensus 232 ~~~~~~~~~~~e~~~~~DIV-I~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDII-ITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEE-EECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 111 12333 3579999 5554 22344444 3556779998866
No 301
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.23 E-value=4.5 Score=38.63 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=43.4
Q ss_pred CCeEEEEc-cCcchHHHHHHHHHhcC--CCCcEEEEEeCCchHHHHHHHHHH----hhcCceEEEEe--cchHHHhcCCC
Q 027409 42 AKLIVEAW-THGGPITTSIGLAIAAR--HTCARHVCIVPDERSRLAYVKAMY----DVVGWVSEVIV--RQAEEVMGELK 112 (223)
Q Consensus 42 ak~ILEIG-T~~Gys~Stl~la~A~~--~~~g~i~TIE~d~e~~~~Ar~~~~----~a~G~~I~li~--GdA~evL~~L~ 112 (223)
.+.|+=+| ||+|=++++..||.+.. ..+.+|.-|+.|+.+.. |.+.+. .. |+.+.... .+..+.|.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~-a~eqL~~~a~~~-~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIG-AVEQLKTYAKIM-GIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHH-HHHHHHHHHHHh-CCceEccCCHHhHHHHHHHhC
Confidence 34677788 56665333334443332 22347877888876542 223333 33 65532221 22234556666
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
.+|+||||..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 8999999965
No 302
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=86.98 E-value=5.3 Score=35.75 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=56.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fD 115 (223)
.-++||=.|+ .+.+..++.+|.+. +.+ |+.++.++++.+.+++ . |.. +.....+..++...+ ..+|
T Consensus 160 ~g~~vlV~G~-g~vG~~~~~~a~~~---G~~~v~~~~~~~~~~~~~~~----~-Ga~~~i~~~~~~~~~~~~~~~~~~~d 230 (347)
T PRK10309 160 EGKNVIIIGA-GTIGLLAIQCAVAL---GAKSVTAIDINSEKLALAKS----L-GAMQTFNSREMSAPQIQSVLRELRFD 230 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHH----c-CCceEecCcccCHHHHHHHhcCCCCC
Confidence 4568888886 34544455555442 554 7889999988776643 3 543 333333322333223 2688
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
-+++|+.-. ...++ .+..+++||.++.=-+
T Consensus 231 ~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 231 QLILETAGV--PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred eEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 788998643 23443 5567788888875443
No 303
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=86.90 E-value=5.7 Score=35.81 Aligned_cols=92 Identities=8% Similarity=-0.075 Sum_probs=52.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC---CchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP---DERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~---d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDf 116 (223)
.-++||=+|++ |.+..++.+|++. +.+++.++. ++++.+.|+ +. |.. |.....+..+ ......+|.
T Consensus 172 ~g~~vlI~G~G-~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~~~~~~----~~-Ga~~v~~~~~~~~~-~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAG-PIGLLAALLLRLR---GFEVYVLNRRDPPDPKADIVE----EL-GATYVNSSKTPVAE-VKLVGEFDL 241 (355)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHH----Hc-CCEEecCCccchhh-hhhcCCCCE
Confidence 45789988863 5544555666543 568888887 566655554 44 665 3322223222 222247996
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|| |+--. ...++ .+..+++||.++.=
T Consensus 242 vi-d~~g~--~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 242 II-EATGV--PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred EE-ECcCC--HHHHHHHHHHccCCcEEEEE
Confidence 54 56432 22444 56777888888753
No 304
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=86.89 E-value=6.3 Score=34.79 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=53.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec---chHHHhcCC-C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR---QAEEVMGEL-K 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G---dA~evL~~L-~ 112 (223)
...-++||=.|.+.+.+..++.+|.+. +.+++.+-.+++..+..++.+.+. |.. +..... +..+.+..+ .
T Consensus 144 ~~~g~~vlI~g~~g~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~i~~~~~ 219 (341)
T cd08290 144 LQPGDWVIQNGANSAVGQAVIQLAKLL---GIKTINVVRDRPDLEELKERLKAL-GADHVLTEEELRSLLATELLKSAPG 219 (341)
T ss_pred cCCCCEEEEccchhHHHHHHHHHHHHc---CCeEEEEEcCCCcchhHHHHHHhc-CCCEEEeCcccccccHHHHHHHHcC
Confidence 345577887776444433666666543 556555544442223333444445 665 332222 344444443 2
Q ss_pred -CccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 113 -GVDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 113 -~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
.+|+|| |+.-... ..+.++.++++|.++.
T Consensus 220 ~~~d~vl-d~~g~~~--~~~~~~~l~~~G~~v~ 249 (341)
T cd08290 220 GRPKLAL-NCVGGKS--ATELARLLSPGGTMVT 249 (341)
T ss_pred CCceEEE-ECcCcHh--HHHHHHHhCCCCEEEE
Confidence 699887 8765533 3345566677777663
No 305
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.79 E-value=5.6 Score=34.70 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=52.7
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
-++||=+|++ +.+..++.+|++. +.+ |+.++.++++.+.|++ . |.. +.. .+..+.+.++ ..+|
T Consensus 121 g~~VlV~G~G-~vG~~~~~~ak~~---G~~~Vi~~~~~~~r~~~a~~----~-Ga~~~i~~--~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 121 GRRVLVVGAG-MLGLTAAAAAAAA---GAARVVAADPSPDRRELALS----F-GATALAEP--EVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHH----c-CCcEecCc--hhhHHHHHHHhCCCCCC
Confidence 4588888864 5544555555442 554 8888999988877765 3 544 221 1122323322 2699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeCCC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
.|| |+--. ...++ .+..+++||.++.=-++
T Consensus 190 ~vi-d~~G~--~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 190 VAL-EFSGA--TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred EEE-ECCCC--hHHHHHHHHHhcCCCEEEEeccC
Confidence 875 66422 22343 45666778877754433
No 306
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=86.75 E-value=1.7 Score=35.29 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcccHHH
Q 027409 52 GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARV 129 (223)
Q Consensus 52 ~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~ 129 (223)
.|=+..++.||.+....|-++.-||.|+........ +. . .. ....-.+.+..+ ..||+|++|+........
T Consensus 11 ~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~-~~-~--~~---~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~ 83 (169)
T cd02037 11 VGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM-WR-G--PM---KMGAIKQFLTDVDWGELDYLVIDMPPGTGDEH 83 (169)
T ss_pred CChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHH-Hh-C--cc---hHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHH
Confidence 344445556665555556689999999886432221 11 1 10 001111233433 479999999988765544
Q ss_pred HHHh
Q 027409 130 LRFA 133 (223)
Q Consensus 130 f~~~ 133 (223)
+...
T Consensus 84 ~~~~ 87 (169)
T cd02037 84 LTLA 87 (169)
T ss_pred HHHH
Confidence 4433
No 307
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=86.70 E-value=1.3 Score=39.31 Aligned_cols=69 Identities=28% Similarity=0.389 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh-h--cC-ce--EEEEecchHHHhcCC------CCccEEEE
Q 027409 52 GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD-V--VG-WV--SEVIVRQAEEVMGEL------KGVDFLVV 119 (223)
Q Consensus 52 ~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~-a--~G-~~--I~li~GdA~evL~~L------~~fDfVFI 119 (223)
.|=+++.++||-+....|++|+=||-||.+--. .|.+ + -| +. +++...+=...|... ..|||||+
T Consensus 13 aGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~---~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~Vlv 89 (231)
T PF07015_consen 13 AGKTTAAMALASELAARGARVALIDADPNQPLA---KWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLV 89 (231)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH---HHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEE
Confidence 455455566665555668899999999885433 2322 2 02 22 566555444444332 26999999
Q ss_pred eCCC
Q 027409 120 DCTS 123 (223)
Q Consensus 120 Da~K 123 (223)
|-.-
T Consensus 90 DleG 93 (231)
T PF07015_consen 90 DLEG 93 (231)
T ss_pred eCCC
Confidence 9753
No 308
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.60 E-value=3.9 Score=34.15 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=52.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hh--------c
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VM--------G 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL--------~ 109 (223)
...++||=.|.+.| .+..++... ...+.+|+.+.++++....+.+.+... +..++++.+|..+ .+ .
T Consensus 4 ~~~~~ilItGasg~-iG~~l~~~l--~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 4 LEGRVALVTGAARG-IGRAIAVRL--AADGAEVIVVDICGDDAAATAELVEAA-GGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCCEEEEcCCCCc-HHHHHHHHH--HHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45678998887644 445544433 334678999999988777766667665 5557777777642 12 2
Q ss_pred CCCCccEEEEeCCC
Q 027409 110 ELKGVDFLVVDCTS 123 (223)
Q Consensus 110 ~L~~fDfVFIDa~K 123 (223)
.++++|.||.-+..
T Consensus 80 ~~~~~d~vi~~ag~ 93 (251)
T PRK12826 80 DFGRLDILVANAGI 93 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 22468988877643
No 309
>PRK05967 cystathionine beta-lyase; Provisional
Probab=86.28 E-value=11 Score=35.79 Aligned_cols=123 Identities=8% Similarity=0.028 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+..+=..++.+-+...-+=+.+ |- +++.++. +...+|.+|++.+.. .......++.+++. |..++++.
T Consensus 61 ~gnPt~~~Le~~la~le~~~~~v~~sS--G~--aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~-Gi~v~~vd 135 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGSAGTILVPS--GL--AAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRL-GVEVEYYD 135 (395)
T ss_pred CCChHHHHHHHHHHHHhCCCCEEEECc--HH--HHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhc-CeEEEEeC
Confidence 567777777777777776666665655 43 3332222 335566777776443 33344455667777 98877775
Q ss_pred cchHHHhcC-C-CCccEEEEeC--CCcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDC--TSKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa--~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+..+.+.+ + +.-.+|++.. +.-....-++.+ ... +.|.++|+||++...
T Consensus 136 ~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p 191 (395)
T PRK05967 136 PEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATP 191 (395)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCc
Confidence 443454554 3 3578999995 333334444444 333 678999999997543
No 310
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=86.25 E-value=7.8 Score=34.94 Aligned_cols=91 Identities=9% Similarity=0.034 Sum_probs=53.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEe
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFID 120 (223)
.-.+||=+|+| |.+..++.+|.... .+.+|+.++.++++.+.|++ + |... .+ .+ .-..+ .+|.|| |
T Consensus 163 ~g~~VlV~G~G-~vGl~~~~~a~~~~-g~~~vi~~~~~~~k~~~a~~----~-~~~~-~~-~~---~~~~~-g~d~vi-D 228 (341)
T cd08237 163 DRNVIGVWGDG-NLGYITALLLKQIY-PESKLVVFGKHQEKLDLFSF----A-DETY-LI-DD---IPEDL-AVDHAF-E 228 (341)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHhc-CCCcEEEEeCcHhHHHHHhh----c-Ccee-eh-hh---hhhcc-CCcEEE-E
Confidence 34689988863 54223344443222 23579999999999888875 4 4421 11 11 11111 589776 7
Q ss_pred CCCcc-cHHHHH-HhccCCCceEEEEe
Q 027409 121 CTSKD-FARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 121 a~K~~-Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+--.. ....++ .++.+++||.++.=
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 65432 344554 56778999988753
No 311
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=86.17 E-value=8.6 Score=33.83 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=55.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
....+||=.|++.+.+..++.+|.+. +.+++.+..++++.+.+++. ... -+... +..+.+.++..+|++|
T Consensus 161 ~~~~~vlI~g~~g~~g~~~~~la~~~---g~~vi~~~~~~~~~~~~~~~-~~~---~~~~~--~~~~~v~~~~~~d~~l- 230 (334)
T PRK13771 161 KKGETVLVTGAGGGVGIHAIQVAKAL---GAKVIAVTSSESKAKIVSKY-ADY---VIVGS--KFSEEVKKIGGADIVI- 230 (334)
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHH-HHH---hcCch--hHHHHHHhcCCCcEEE-
Confidence 34567888888545444666666543 67899999999998888765 322 11111 3333344445689877
Q ss_pred eCCCcccHHHHHHhccCCCceEEE
Q 027409 120 DCTSKDFARVLRFARFSNKGAVLA 143 (223)
Q Consensus 120 Da~K~~Y~~~f~~~~~l~~GgvIV 143 (223)
|+-.. ...-..++.+++||.++
T Consensus 231 d~~g~--~~~~~~~~~l~~~G~~v 252 (334)
T PRK13771 231 ETVGT--PTLEESLRSLNMGGKII 252 (334)
T ss_pred EcCCh--HHHHHHHHHHhcCCEEE
Confidence 87543 23334556676777655
No 312
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.16 E-value=13 Score=33.99 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=52.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~GdA~evL~~L~~fDfV 117 (223)
..+++|.=||+ |-.+++++++.+..+--..|+=+|++++.++.-.--+.++..+ . +.+..+| .+- +..-|+|
T Consensus 4 ~~~~ki~iiGa--G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~-~~~---~~~adiv 77 (315)
T PRK00066 4 KQHNKVVLVGD--GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGD-YSD---CKDADLV 77 (315)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCC-HHH---hCCCCEE
Confidence 35679999997 4457788877665443347999999988766555556665122 2 6666555 333 4579999
Q ss_pred EEeCCC
Q 027409 118 VVDCTS 123 (223)
Q Consensus 118 FIDa~K 123 (223)
+|-|..
T Consensus 78 Iitag~ 83 (315)
T PRK00066 78 VITAGA 83 (315)
T ss_pred EEecCC
Confidence 998865
No 313
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=85.93 E-value=3.3 Score=30.15 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=56.0
Q ss_pred EEEEccCcchHHHHHHHHHhcCCCC---cEEEEE-eCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEe
Q 027409 45 IVEAWTHGGPITTSIGLAIAARHTC---ARHVCI-VPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 45 ILEIGT~~Gys~Stl~la~A~~~~~---g~i~TI-E~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFID 120 (223)
|-=||+| --+++|..... ..+ .+|+-+ ++++++.+..+ ++. +. ++...+..|++. .-|+||+=
T Consensus 2 I~iIG~G--~mg~al~~~l~--~~g~~~~~v~~~~~r~~~~~~~~~---~~~-~~--~~~~~~~~~~~~---~advvila 68 (96)
T PF03807_consen 2 IGIIGAG--NMGSALARGLL--ASGIKPHEVIIVSSRSPEKAAELA---KEY-GV--QATADDNEEAAQ---EADVVILA 68 (96)
T ss_dssp EEEESTS--HHHHHHHHHHH--HTTS-GGEEEEEEESSHHHHHHHH---HHC-TT--EEESEEHHHHHH---HTSEEEE-
T ss_pred EEEECCC--HHHHHHHHHHH--HCCCCceeEEeeccCcHHHHHHHH---Hhh-cc--ccccCChHHhhc---cCCEEEEE
Confidence 4446665 33455443332 333 678844 99998765544 333 43 455567777776 68999999
Q ss_pred CCCcccHHHHHHhccCCCceEEEE
Q 027409 121 CTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 121 a~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
....++.+.++.+....++.+||.
T Consensus 69 v~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 69 VKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ECHHHHHHHHHHHhhccCCCEEEE
Confidence 999999999987744577777764
No 314
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.67 E-value=6.4 Score=36.42 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=50.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc---------------------hHHHHHHHHHHhhcCce--E
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE---------------------RSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~---------------------e~~~~Ar~~~~~a~G~~--I 97 (223)
+.++||=||+| |. +|.++..++... =|+|+=+|.|. .+.+.|++.+++. +-. |
T Consensus 23 ~~~~VlIiG~G-gl-Gs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i 98 (338)
T PRK12475 23 REKHVLIVGAG-AL-GAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEI 98 (338)
T ss_pred cCCcEEEECCC-HH-HHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEE
Confidence 45679999998 43 455555444332 26898899884 3678888888877 443 7
Q ss_pred EEEecchH-HHhcCC-CCccEEEEeCC
Q 027409 98 EVIVRQAE-EVMGEL-KGVDFLVVDCT 122 (223)
Q Consensus 98 ~li~GdA~-evL~~L-~~fDfVFIDa~ 122 (223)
+.+..+.. +.+.++ +.+|+|+.=.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D 125 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDATD 125 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcCC
Confidence 77777653 334443 67997654334
No 315
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.66 E-value=4.9 Score=33.98 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~---- 110 (223)
..|+||=.|.+.| .++.++...+ ..+.+|+.+.++++..+.+.+.+++. +-.+.++.+|..+ .+.+
T Consensus 6 ~~k~ilItGas~~-iG~~ia~~l~--~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGAAG-IGRATALAFA--REGAKVVVADRDAAGGEETVALIREA-GGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4689999998766 3555544333 34678999999999888888888776 6557888887742 1221
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.++.-+.
T Consensus 82 ~g~id~li~~ag 93 (253)
T PRK06172 82 YGRLDYAFNNAG 93 (253)
T ss_pred hCCCCEEEECCC
Confidence 246798887654
No 316
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=85.64 E-value=5.4 Score=30.09 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=37.7
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
+||=+ |+.|.++|++. + ...++.+++. |+++++...+..++-.....+|+||.=.
T Consensus 4 kILvv-CgsG~~TS~m~-~--------------------~ki~~~l~~~-gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 4 KIIVA-CGGAVATSTMA-A--------------------EEIKELCQSH-NIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred eEEEE-CCCchhHHHHH-H--------------------HHHHHHHHHC-CCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 67766 88887555432 2 2345677777 8888888878776533346789998765
No 317
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=85.50 E-value=9.3 Score=33.54 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=45.3
Q ss_pred EEccCcchHHHHHHHHHhcCC--CCcEEEEEeCCchHHHHHHHHHHhhcCc--eEEEEe-cchHHHhcCCCCccEEEEeC
Q 027409 47 EAWTHGGPITTSIGLAIAARH--TCARHVCIVPDERSRLAYVKAMYDVVGW--VSEVIV-RQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 47 EIGT~~Gys~Stl~la~A~~~--~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~I~li~-GdA~evL~~L~~fDfVFIDa 121 (223)
=||+| |.-+++++...+..+ ...+|+-+|+++++++.....++++... ..++.. .|..+.+ ..-|||++=+
T Consensus 3 IIGag-G~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~---~~aDiVv~t~ 78 (263)
T cd00650 3 VIGAG-GNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAF---KDADVVIITA 78 (263)
T ss_pred EECCC-ChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHh---CCCCEEEECC
Confidence 36763 223456666555443 3368999999999988888888766111 234433 3333444 4699999966
Q ss_pred CC
Q 027409 122 TS 123 (223)
Q Consensus 122 ~K 123 (223)
.+
T Consensus 79 ~~ 80 (263)
T cd00650 79 GV 80 (263)
T ss_pred CC
Confidence 55
No 318
>PHA02518 ParA-like protein; Provisional
Probab=85.44 E-value=2 Score=35.42 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce-EEEEe-cch-HHHhcCC-CCccEEEEeCCCc
Q 027409 52 GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV-SEVIV-RQA-EEVMGEL-KGVDFLVVDCTSK 124 (223)
Q Consensus 52 ~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~-I~li~-GdA-~evL~~L-~~fDfVFIDa~K~ 124 (223)
+|=++++..||.+....+-++.-||.|++.- +...+... -+.. +..+. ++. .+.|.++ ..||+|+||+...
T Consensus 12 vGKTT~a~~la~~la~~g~~vlliD~D~q~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~viiD~p~~ 87 (211)
T PHA02518 12 AGKTTVATNLASWLHADGHKVLLVDLDPQGS--STDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDGAPQ 87 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--hHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEEEeCCCC
Confidence 3443444455544444566899999998742 22222221 0111 22211 121 2344444 4799999999765
No 319
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.39 E-value=17 Score=32.76 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=49.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc---CceEEEEecchHHHhcCCCCccEEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV---GWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~---G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
++|.=||+| ..+++++.+.+.......|+-+|++++..+....-+.++. +..+.+..++..+ +...|+|++
T Consensus 1 ~kI~IIGaG--~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~----l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAG--HVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD----CKDADIVVI 74 (306)
T ss_pred CEEEEECCC--HHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH----hCCCCEEEE
Confidence 367889984 4567777766544322489999999998776666666541 1125555555432 357999999
Q ss_pred eCCC
Q 027409 120 DCTS 123 (223)
Q Consensus 120 Da~K 123 (223)
=+..
T Consensus 75 tag~ 78 (306)
T cd05291 75 TAGA 78 (306)
T ss_pred ccCC
Confidence 8765
No 320
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.30 E-value=7.3 Score=37.31 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=57.9
Q ss_pred HHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHH
Q 027409 32 LLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEE 106 (223)
Q Consensus 32 fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~e 106 (223)
.+..+.+.. .=++|+=+|+| ..+..++. .++..|++|+-+|+|+.+.+.|++ . |.. +. ..+
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G--~IG~~va~--~ak~~Ga~ViV~d~d~~R~~~A~~----~-G~~~~~-----~~e 253 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYG--DVGKGCAQ--SLRGQGARVIVTEVDPICALQAAM----E-GYEVMT-----MEE 253 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCC--HHHHHHHH--HHHHCCCEEEEEECChhhHHHHHh----c-CCEEcc-----HHH
Confidence 344455543 45799999986 34444443 334457788889999999888865 4 665 21 123
Q ss_pred HhcCCCCccEEEEeCCCcccHHHHH--HhccCCCceEEEE
Q 027409 107 VMGELKGVDFLVVDCTSKDFARVLR--FARFSNKGAVLAF 144 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K~~Y~~~f~--~~~~l~~GgvIV~ 144 (223)
.+ ...|+|| ||.- -...+. .+..+++||+|+.
T Consensus 254 ~v---~~aDVVI-~atG--~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 254 AV---KEGDIFV-TTTG--NKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred HH---cCCCEEE-ECCC--CHHHHHHHHHhcCCCCcEEEE
Confidence 33 3578775 5642 344565 3566799998863
No 321
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=84.56 E-value=5.6 Score=36.96 Aligned_cols=98 Identities=12% Similarity=-0.021 Sum_probs=55.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc---CceEEEEe----cchHHHhcCC---C
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV---GWVSEVIV----RQAEEVMGEL---K 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~---G~~I~li~----GdA~evL~~L---~ 112 (223)
.+||=+|.+.+.+..++.+|++......+|+.++.++++.+.|++.+.... |....++. .+..+.+.++ .
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 688888855455445556665431111379999999999999998754220 22212222 2334444443 2
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCC-ceEEE
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNK-GAVLA 143 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~-GgvIV 143 (223)
.+|.||..... ...+. .++.+++ |++++
T Consensus 257 g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 257 GFDDVFVFVPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence 69988875432 23443 4566654 44544
No 322
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.53 E-value=2.7 Score=37.73 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=40.3
Q ss_pred CCCeEEEEc-cCcchHHHHHHHHHhcCCC-C-cEEEEEeCCchHHHHHHHHH---HhhcCceEEEEec--chHHHhcCCC
Q 027409 41 NAKLIVEAW-THGGPITTSIGLAIAARHT-C-ARHVCIVPDERSRLAYVKAM---YDVVGWVSEVIVR--QAEEVMGELK 112 (223)
Q Consensus 41 ~ak~ILEIG-T~~Gys~Stl~la~A~~~~-~-g~i~TIE~d~e~~~~Ar~~~---~~a~G~~I~li~G--dA~evL~~L~ 112 (223)
+++.|+=+| ||.|=+++...||...... + -+|.-|..|+.+. .|.+.+ .+..|+.+..... +..+.|..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~-~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI-GAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch-hHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 345666777 5555433333444333222 2 3566666666543 222332 2222555332221 2234566666
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
.+|+||||..
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 7999999974
No 323
>PTZ00117 malate dehydrogenase; Provisional
Probab=84.50 E-value=16 Score=33.37 Aligned_cols=99 Identities=16% Similarity=0.069 Sum_probs=59.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-HHhh---cCceEEEEe-cchHHHhcCCCCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-MYDV---VGWVSEVIV-RQAEEVMGELKGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-~~~a---~G~~I~li~-GdA~evL~~L~~f 114 (223)
.+.++|.=||.|. .++++++..+...- +.|+=+|++++..+ +... +..+ .+...++.. +| .+.+ ..-
T Consensus 3 ~~~~KI~IIGaG~--vG~~ia~~l~~~~~-~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d-~~~l---~~A 74 (319)
T PTZ00117 3 VKRKKISMIGAGQ--IGSTVALLILQKNL-GDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNN-YEDI---KDS 74 (319)
T ss_pred CCCcEEEEECCCH--HHHHHHHHHHHCCC-CeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCC-HHHh---CCC
Confidence 3567899999754 34567766554432 67999999988754 3332 3332 122245543 44 3333 468
Q ss_pred cEEEEeCCCcccH----------------HHHHHhccCCCce-EEEEeC
Q 027409 115 DFLVVDCTSKDFA----------------RVLRFARFSNKGA-VLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~Y~----------------~~f~~~~~l~~Gg-vIV~DN 146 (223)
|||++-+.....+ ++.+.+....|.+ +|++-|
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999999766655 4444444445555 777777
No 324
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=84.45 E-value=11 Score=35.22 Aligned_cols=123 Identities=13% Similarity=0.115 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-+|.+.+|=..|++..+++..+= ++.|. +++.++. +...++.+|++.+..- ......+...... |..+.++.
T Consensus 56 ~~~p~~~~le~~lA~l~g~~~av~--~~sG~--~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~-G~~~~~vd 130 (391)
T TIGR01328 56 LGNPTVSNLEGRIAFLEGTEAAVA--TSSGM--GAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKF-GIQVDFIN 130 (391)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcC-CeEEEEEC
Confidence 567889999999999999998654 44455 3443332 3345566777765422 2344455556666 87766655
Q ss_pred cchHH-HhcCC-CCccEEEEeCCCcccHHH--HHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEE-VMGEL-KGVDFLVVDCTSKDFARV--LRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~e-vL~~L-~~fDfVFIDa~K~~Y~~~--f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+-.+ +...+ ++-.+||+..--.-.-.. ++.+ ... +.|..+|.||.+..+
T Consensus 131 ~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~ 186 (391)
T TIGR01328 131 MAIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATP 186 (391)
T ss_pred CCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchh
Confidence 54333 33334 367899987532111111 2322 333 568899999997543
No 325
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.43 E-value=1.1 Score=42.71 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
|++.-..=|..+++.--.+-+|+.+=++.|- +|..+| +.+.+.|+|...|++.++.+.-++.+..+ |.+ ++..+|
T Consensus 196 ilqd~asclpA~ll~p~~g~~v~d~caapg~--KTsH~a-~i~~n~gki~afe~d~~r~~tl~~~l~~a-g~~~~~~~~~ 271 (413)
T KOG2360|consen 196 ILQDKASCLPAHLLDPRPGSRVIDTCAAPGN--KTSHLA-AIMRNQGKIYAFERDAKRAATLRKLLKIA-GVSIVESVEG 271 (413)
T ss_pred EEechhhcchhhhcCCCCCCceeeecccccc--chhhHH-HHhhccCCcchhhhhhHHHHHHHHHHHHc-CCCccccccc
Confidence 3443344455666666677889999888888 666776 45667899999999999999999999999 999 888899
Q ss_pred chHHH-hcC-CCCccEEEEeC
Q 027409 103 QAEEV-MGE-LKGVDFLVVDC 121 (223)
Q Consensus 103 dA~ev-L~~-L~~fDfVFIDa 121 (223)
|.+.+ .+. +...-.+++|-
T Consensus 272 df~~t~~~~~~~~v~~iL~Dp 292 (413)
T KOG2360|consen 272 DFLNTATPEKFRDVTYILVDP 292 (413)
T ss_pred cccCCCCcccccceeEEEeCC
Confidence 99885 221 24566677763
No 326
>PRK07582 cystathionine gamma-lyase; Validated
Probab=84.29 E-value=17 Score=33.58 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=69.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-+|...+|-..+++.. +..++=+++|. +++.++. +...++.+|++.+..- .....++..+++. |..+.++.
T Consensus 48 y~~p~~~~Le~~lA~l~-~~~~v~~~sG~----~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~-G~~v~~v~ 121 (366)
T PRK07582 48 ASNPTWRALEAALGELE-GAEALVFPSGM----AAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPL-GVTVREAP 121 (366)
T ss_pred CCCccHHHHHHHHHHHc-CCCEEEECCHH----HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcC-eEEEEEEC
Confidence 34678888888899888 56666666653 3333322 3345567888876543 4445566667777 88855554
Q ss_pred cc-hHHHhcCCCCccEEEEeCCC--cccHHHHHHh-ccC-CCceEEEEeCCCC
Q 027409 102 RQ-AEEVMGELKGVDFLVVDCTS--KDFARVLRFA-RFS-NKGAVLAFKNAFQ 149 (223)
Q Consensus 102 Gd-A~evL~~L~~fDfVFIDa~K--~~Y~~~f~~~-~~l-~~GgvIV~DNvl~ 149 (223)
-+ ..+ ..+...++||+..-. .....-++.+ ... +.|.++|+||.+.
T Consensus 122 ~~~~~~--~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 122 TAGMAE--AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTA 172 (366)
T ss_pred CCChHH--HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCC
Confidence 33 222 112467899987422 1112123322 333 5689999999864
No 327
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=84.15 E-value=6.9 Score=35.81 Aligned_cols=95 Identities=22% Similarity=0.142 Sum_probs=58.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--G 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~ 113 (223)
+..-++||=.|-+.|++..++.||++. +++++.+-..++..+.+ ++. |-. |+....|-.+.+.++ + .
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~---G~~~v~~~~s~~k~~~~----~~l-GAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKAL---GATVVAVVSSSEKLELL----KEL-GADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHc---CCcEEEEecCHHHHHHH----Hhc-CCCEEEcCCcccHHHHHHHHcCCCC
Confidence 445689999998889988888888764 32444444444433344 444 554 788888888888766 2 6
Q ss_pred ccEEEEeCCCc-ccHHHHHHhccCCCceEEEEe
Q 027409 114 VDFLVVDCTSK-DFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~-~Y~~~f~~~~~l~~GgvIV~D 145 (223)
+|+|| |.--. .+.+ .+..+++||.++.=
T Consensus 212 vDvv~-D~vG~~~~~~---~l~~l~~~G~lv~i 240 (326)
T COG0604 212 VDVVL-DTVGGDTFAA---SLAALAPGGRLVSI 240 (326)
T ss_pred ceEEE-ECCCHHHHHH---HHHHhccCCEEEEE
Confidence 99987 44332 2222 34455445555543
No 328
>PRK07478 short chain dehydrogenase; Provisional
Probab=84.05 E-value=9.1 Score=32.39 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=53.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~ 110 (223)
.-|.+|=.|.+.|. +..++...+ ..+.+|+-+.++++..+...+.++.. |..+.++..|..+ +..+
T Consensus 5 ~~k~~lItGas~gi-G~~ia~~l~--~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 5 NGKVAIITGASSGI-GRAAAKLFA--REGAKVVVGARRQAELDQLVAEIRAE-GGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCEEEEeCCCChH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35789989988663 455544433 34678999999998888887778776 6556677776422 2223
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
.++.|.++.-|.
T Consensus 81 ~~~id~li~~ag 92 (254)
T PRK07478 81 FGGLDIAFNNAG 92 (254)
T ss_pred cCCCCEEEECCC
Confidence 347899887764
No 329
>PLN02740 Alcohol dehydrogenase-like
Probab=84.04 E-value=9.9 Score=34.84 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=53.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC-C-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL-K- 112 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L-~- 112 (223)
..-++||=+|++ +.+..++.+|++ .++ +|+.++.++++.+.|++ . |.. |.... .+..+.+.++ .
T Consensus 197 ~~g~~VlV~G~G-~vG~~a~q~ak~---~G~~~Vi~~~~~~~r~~~a~~----~-Ga~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 197 QAGSSVAIFGLG-AVGLAVAEGARA---RGASKIIGVDINPEKFEKGKE----M-GITDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHH----c-CCcEEEecccccchHHHHHHHHhCC
Confidence 345689999863 554455555543 355 69999999998888865 4 654 33222 1233444443 2
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCCc-eEEEE
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNKG-AVLAF 144 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~ 144 (223)
.+|+| +|+.-.. ..++ .+..+++| |.++.
T Consensus 268 g~dvv-id~~G~~--~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 268 GVDYS-FECAGNV--EVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCEE-EECCCCh--HHHHHHHHhhhcCCCEEEE
Confidence 69965 6665322 2343 44555564 65544
No 330
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=83.98 E-value=17 Score=31.62 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=52.7
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfV 117 (223)
-++||=+|.+.+.+..++.+|.+ -+.+++++..++++.+.++ +. |.. +.. ..+..+.+..+ ..+|.|
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~---~g~~v~~~~~~~~~~~~~~----~~-g~~~v~~~-~~~~~~~~~~~~~~~~d~v 217 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAK---LGYEVVASTGKADAADYLK----KL-GAKEVIPR-EELQEESIKPLEKQRWAGA 217 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHH---CCCeEEEEecCHHHHHHHH----Hc-CCCEEEcc-hhHHHHHHHhhccCCcCEE
Confidence 35898899866654344455543 3678999999888765554 34 654 221 11122333333 368976
Q ss_pred EEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 118 VVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 118 FIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
| |+.... ..-+.+..++++|.++.
T Consensus 218 l-d~~g~~--~~~~~~~~l~~~G~~i~ 241 (326)
T cd08289 218 V-DPVGGK--TLAYLLSTLQYGGSVAV 241 (326)
T ss_pred E-ECCcHH--HHHHHHHHhhcCCEEEE
Confidence 5 886542 22235566677777654
No 331
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=83.96 E-value=7.4 Score=29.49 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEe
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFID 120 (223)
+.++||=+ |+.|.| |++ ++. ..++..++. |+++++...+..++-..+..||+|++=
T Consensus 2 ~~~~ILl~-C~~G~s-SS~-l~~--------------------k~~~~~~~~-gi~~~v~a~~~~~~~~~~~~~Dvill~ 57 (95)
T TIGR00853 2 NETNILLL-CAAGMS-TSL-LVN--------------------KMNKAAEEY-GVPVKIAAGSYGAAGEKLDDADVVLLA 57 (95)
T ss_pred CccEEEEE-CCCchh-HHH-HHH--------------------HHHHHHHHC-CCcEEEEEecHHHHHhhcCCCCEEEEC
Confidence 45788866 999975 443 332 125566777 998888888888865455689999997
Q ss_pred CCCcccHHHH
Q 027409 121 CTSKDFARVL 130 (223)
Q Consensus 121 a~K~~Y~~~f 130 (223)
..=..+.+-+
T Consensus 58 pqi~~~~~~i 67 (95)
T TIGR00853 58 PQVAYMLPDL 67 (95)
T ss_pred chHHHHHHHH
Confidence 6543333333
No 332
>PRK05939 hypothetical protein; Provisional
Probab=83.84 E-value=20 Score=33.71 Aligned_cols=122 Identities=9% Similarity=0.007 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.=.|.+.+|=..|+.+.+++..+-+.+| . +++..+. +...++.+|++.+..- ...... ..+++. |..+.++.
T Consensus 44 ~g~p~~~~lE~~la~leg~~~~v~~ssG--~--~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~-G~~v~~v~ 117 (397)
T PRK05939 44 QGTPTTAALEAKITKMEGGVGTVCFATG--M--AAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGL-GVEVTMVD 117 (397)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEeCCH--H--HHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhc-CCEEEEEC
Confidence 4568889999999999999988777664 4 3333322 3345677888866532 222222 346677 88866654
Q ss_pred cchHHHhcC-C-CCccEEEEeCCC--cccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCTS--KDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~K--~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+-.+.|.. + +.-.+|++..-- .....-++.+ ... +.|.+||+||.+..+
T Consensus 118 ~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~ 173 (397)
T PRK05939 118 ATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSP 173 (397)
T ss_pred CCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccc
Confidence 332343443 4 367899997532 2223233333 333 678999999987543
No 333
>PRK06194 hypothetical protein; Provisional
Probab=83.77 E-value=8.3 Score=33.29 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=53.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--HhcC--------
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMGE-------- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~~-------- 110 (223)
+-++||=.|.+.| +++.++...+ ..+.+|+.++++++..+...+.+... |..+.++.+|..+ .+.+
T Consensus 5 ~~k~vlVtGasgg-IG~~la~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 5 AGKVAVITGAASG-FGLAFARIGA--ALGMKLVLADVQQDALDRAVAELRAQ-GAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCEEEEeCCccH-HHHHHHHHHH--HCCCEEEEEeCChHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3478998888766 4566554433 34678999999988777776666665 6667778888642 2222
Q ss_pred CCCccEEEEeCCC
Q 027409 111 LKGVDFLVVDCTS 123 (223)
Q Consensus 111 L~~fDfVFIDa~K 123 (223)
.+++|.||.=|.-
T Consensus 81 ~g~id~vi~~Ag~ 93 (287)
T PRK06194 81 FGAVHLLFNNAGV 93 (287)
T ss_pred cCCCCEEEECCCC
Confidence 2368999887754
No 334
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.61 E-value=9.3 Score=31.94 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~ 110 (223)
+.+.+|=.|.+.| .+..+ +......+.+|+.+.++++..+.....++.. +..+.++.+|..+ .+. +
T Consensus 6 ~~~~vlVtG~sg~-iG~~l--~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 6 QGKNALITGAGRG-IGRAV--AIALAKEGVNVGLLARTEENLKAVAEEVEAY-GVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCCEEEEEcCCch-HHHHH--HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4478899997644 34544 4333345779999999988777666666666 6557777777521 122 2
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+.+.|.||.-+.
T Consensus 82 ~~~id~vi~~ag 93 (239)
T PRK07666 82 LGSIDILINNAG 93 (239)
T ss_pred cCCccEEEEcCc
Confidence 346898887653
No 335
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.51 E-value=6 Score=33.53 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=52.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hh--------cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VM--------GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL--------~~ 110 (223)
.-|+||=.|.+.| .++.++... ...+.+|+.++++++..+...+.++.. |.++.++..|..+ .+ ..
T Consensus 9 ~~k~vlItGa~g~-iG~~ia~~l--~~~G~~V~~~~r~~~~~~~~~~~i~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTGSSQG-IGYALAEGL--AQAGAEVILNGRDPAKLAAAAESLKGQ-GLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCEEEEECCcch-HHHHHHHHH--HHcCCEEEEEeCCHHHHHHHHHHHHhc-CceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 3478999997655 455554443 344778999999998887777778776 7666677776642 11 12
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+.+.|.++.-+.
T Consensus 85 ~~~~d~li~~ag 96 (255)
T PRK07523 85 IGPIDILVNNAG 96 (255)
T ss_pred cCCCCEEEECCC
Confidence 346898887765
No 336
>PRK07109 short chain dehydrogenase; Provisional
Probab=83.44 E-value=8.5 Score=34.90 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=54.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------H----hc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------V----MG 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------v----L~ 109 (223)
..-+.||=.|.+.|. +.+++...+ ..+.+|+-+.++++..+...+.++.. |..+.++.+|..+ . ..
T Consensus 6 l~~k~vlITGas~gI-G~~la~~la--~~G~~Vvl~~R~~~~l~~~~~~l~~~-g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 6 IGRQVVVITGASAGV-GRATARAFA--RRGAKVVLLARGEEGLEALAAEIRAA-GGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCEEEEECCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 345789999988774 455544433 34678999999999888888888877 7666777777421 1 12
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
+++++|.++..|.
T Consensus 82 ~~g~iD~lInnAg 94 (334)
T PRK07109 82 ELGPIDTWVNNAM 94 (334)
T ss_pred HCCCCCEEEECCC
Confidence 2357999887765
No 337
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=83.43 E-value=6.7 Score=32.86 Aligned_cols=76 Identities=24% Similarity=0.184 Sum_probs=49.8
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~L~ 112 (223)
++||=.|.+ |+.++.++... ...+.+|+.+.++++..+.....+... +..+.++.+|..+ +.+.+.
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l--~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALAL--AAAGANVVVNDLGEAGAEAAAKVATDA-GGSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHH--HHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 467778865 44456554433 334678999999988777777767665 5557777776642 222345
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
+.|.|+.-+.
T Consensus 78 ~~d~vi~~a~ 87 (255)
T TIGR01963 78 GLDILVNNAG 87 (255)
T ss_pred CCCEEEECCC
Confidence 7899887663
No 338
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=83.35 E-value=2.7 Score=39.58 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=71.2
Q ss_pred HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC
Q 027409 35 AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK 112 (223)
Q Consensus 35 ~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~ 112 (223)
.......+..++.+||++|- ++..++. - ....++-++.++..+.++......+ +++ -.+..+|..+...+=.
T Consensus 104 l~~~~~~~~~~~~~~~g~~~--~~~~i~~--f-~~~~~~Gl~~n~~e~~~~~~~~~~~-~l~~k~~~~~~~~~~~~fedn 177 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGG--PSRYIAV--F-KKAGVVGLDNNAYEAFRANELAKKA-YLDNKCNFVVADFGKMPFEDN 177 (364)
T ss_pred HhhcCcccccccccCcCcCc--hhHHHHH--h-ccCCccCCCcCHHHHHHHHHHHHHH-HhhhhcceehhhhhcCCCCcc
Confidence 33344455578899999886 4444432 2 2467888999998888888887777 777 4447777776433334
Q ss_pred CccEE-EEeCC--CcccHHHH-HHhccCCCceEEEEeCC
Q 027409 113 GVDFL-VVDCT--SKDFARVL-RFARFSNKGAVLAFKNA 147 (223)
Q Consensus 113 ~fDfV-FIDa~--K~~Y~~~f-~~~~~l~~GgvIV~DNv 147 (223)
.||++ |+|+- ..+-...+ |..+.++|||+.++-..
T Consensus 178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 178 TFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 78987 67764 22223344 45577899999998764
No 339
>PRK05867 short chain dehydrogenase; Provisional
Probab=83.27 E-value=7.9 Score=32.84 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=52.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hh----cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VM----GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL----~~ 110 (223)
+-|.+|=.|.+.|. +.+++...+ ..+.+|+.+.++++..+...+.++.. |-.+.++..|..+ .+ ..
T Consensus 8 ~~k~vlVtGas~gI-G~~ia~~l~--~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 8 HGKRALITGASTGI-GKRVALAYV--EAGAQVAIAARHLDALEKLADEIGTS-GGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHH--HCCCEEEEEcCCHHHHHHHHHHHHhc-CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45889999988663 555554443 34678999999998888777777766 6446666666431 11 22
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|.++.-|.
T Consensus 84 ~g~id~lv~~ag 95 (253)
T PRK05867 84 LGGIDIAVCNAG 95 (253)
T ss_pred hCCCCEEEECCC
Confidence 347898887654
No 340
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.23 E-value=8.8 Score=32.01 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=50.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH------HHhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE------EVMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~------evL~~---- 110 (223)
.-+++|=+|.+.|. +..++...+ ..+.+|+.++++++..+.+.+.+... |..+.++..|.. +.+..
T Consensus 4 ~~~~~lItG~~g~i-G~~~a~~l~--~~G~~vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 4 KDKVIVITGGAQGL-GRAMAEYLA--QKGAKLALIDLNQEKLEEAVAECGAL-GTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45789989987553 455544433 34678999999998877777777776 655666667632 12222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.||.=+.
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 246898886543
No 341
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=83.21 E-value=23 Score=32.85 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch---------HHHHHHHHHHhhcCce--
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER---------SRLAYVKAMYDVVGWV-- 96 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e---------~~~~Ar~~~~~a~G~~-- 96 (223)
+....+...+....+++|+=||. |+ +++-+|......+.+|+-++..+. ..+..++.+++. |+.
T Consensus 123 ~~~~~~~~~l~~~~~~~vvViGg--G~--~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~v~ 197 (427)
T TIGR03385 123 EDTDAIKQYIDKNKVENVVIIGG--GY--IGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKH-EINLR 197 (427)
T ss_pred HHHHHHHHHHhhcCCCeEEEECC--CH--HHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHc-CCEEE
Confidence 33444444444567899999986 46 455555444444556777776543 233445556666 765
Q ss_pred ----EEEEecchHH-HhcCCC--CccEEEEeCCCcccHHHHHHhcc-C-CCceEEEEeC
Q 027409 97 ----SEVIVRQAEE-VMGELK--GVDFLVVDCTSKDFARVLRFARF-S-NKGAVLAFKN 146 (223)
Q Consensus 97 ----I~li~GdA~e-vL~~L~--~fDfVFIDa~K~~Y~~~f~~~~~-l-~~GgvIV~DN 146 (223)
|.=+.++... ++.+=+ ++|++++=..-..-..+++.+.+ + +.|++ .+|.
T Consensus 198 ~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i-~vd~ 255 (427)
T TIGR03385 198 LNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAI-WVNE 255 (427)
T ss_pred eCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCE-EECC
Confidence 2223333211 111111 69999986554433456665432 3 44555 4554
No 342
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=83.09 E-value=11 Score=33.25 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=57.1
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCC-CC
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGEL-KG 113 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L-~~ 113 (223)
......+||=.| +.+.+..++.+|.+. .+.+|+.+..++++.+.+++ . |.. +.... .+..+.+.++ +.
T Consensus 159 ~~~~g~~vlV~g-~g~vG~~~~~la~~~--~g~~v~~~~~~~~~~~~~~~----~-g~~~v~~~~~~~~~~~~v~~~~~~ 230 (338)
T PRK09422 159 GIKPGQWIAIYG-AGGLGNLALQYAKNV--FNAKVIAVDINDDKLALAKE----V-GADLTINSKRVEDVAKIIQEKTGG 230 (338)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHh--CCCeEEEEeCChHHHHHHHH----c-CCcEEecccccccHHHHHHHhcCC
Confidence 334556888888 445544555555432 26789999999988777743 4 654 22211 2223344433 46
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
+|++|+|+.. ...++ .++.++++|-++.
T Consensus 231 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 231 AHAAVVTAVA---KAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred CcEEEEeCCC---HHHHHHHHHhccCCCEEEE
Confidence 8999999753 34454 4566667776663
No 343
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=82.76 E-value=18 Score=31.27 Aligned_cols=96 Identities=15% Similarity=0.041 Sum_probs=56.3
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--- 111 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--- 111 (223)
++.....+||=.|.+.+.+..++.+|.+ .+.+++.+..++++.+.+++ . |.. +.....+..+.+.++
T Consensus 138 ~~~~~~~~vlI~g~~~~~g~~~~~la~~---~g~~v~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~ 209 (324)
T cd08244 138 ATLTPGDVVLVTAAAGGLGSLLVQLAKA---AGATVVGAAGGPAKTALVRA----L-GADVAVDYTRPDWPDQVREALGG 209 (324)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHH----c-CCCEEEecCCccHHHHHHHHcCC
Confidence 3445667888888655554455666654 36789999988887666543 4 554 333333444444433
Q ss_pred CCccEEEEeCCCcccHHHHHHhccCCCceEEE
Q 027409 112 KGVDFLVVDCTSKDFARVLRFARFSNKGAVLA 143 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV 143 (223)
..+|+|+ |+-.... .-..++.++++|.++
T Consensus 210 ~~~d~vl-~~~g~~~--~~~~~~~l~~~g~~v 238 (324)
T cd08244 210 GGVTVVL-DGVGGAI--GRAALALLAPGGRFL 238 (324)
T ss_pred CCceEEE-ECCChHh--HHHHHHHhccCcEEE
Confidence 2699987 7754332 223445566666655
No 344
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=82.74 E-value=5.5 Score=29.62 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=43.9
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec--chHHHhcCCCCccEEEEeCCCc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR--QAEEVMGELKGVDFLVVDCTSK 124 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G--dA~evL~~L~~fDfVFIDa~K~ 124 (223)
.-+|..+|-++......+..+... |+. ...-.| +|++.+.+...||+|++|..-.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~-g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~mp 62 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDL-GYEVVEAADGEEEALELLRELPQPDLILLDINMP 62 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHc-CCeEEEeCChHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 458999999999999999999999 987 455566 5666666543599999999755
No 345
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=82.74 E-value=18 Score=33.62 Aligned_cols=123 Identities=13% Similarity=0.001 Sum_probs=69.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCch-HHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDER-SRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~e-~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-+|.+.+|-..|++..++..++ ++++ |- .+|.++. +...++.+|++.+..-. .+.......... |..+.+..
T Consensus 48 ~~~p~~~~le~~lA~l~g~~~v~-~~~g-g~--~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~-~~~v~~~d 122 (382)
T TIGR02080 48 SGNPTRDLLQQALAELEGGAGAV-VTNT-GM--SAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKG-CFRVLFVD 122 (382)
T ss_pred CCCchHHHHHHHHHHHhCCCcEE-EEcC-HH--HHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhc-CeEEEEEC
Confidence 45788888999999999988886 4333 33 4443332 23445667776554432 344444444444 55556554
Q ss_pred cchHHHhc-CC-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMG-EL-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~-~L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+-.+.+. .+ ..-++||+..- .....-=++.+ +.. +.|.+||+||.+..+
T Consensus 123 ~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 123 QGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSP 178 (382)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 43233343 34 35789998742 21221112333 333 568999999997544
No 346
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=82.57 E-value=6.9 Score=34.75 Aligned_cols=84 Identities=12% Similarity=0.002 Sum_probs=50.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
+.+++|=+|+| |.+..++.+|++. +++ |+.++.++++.+.|+.+ +. ++ ..+. .-..+|.||
T Consensus 144 ~~~~vlV~G~G-~vG~~a~q~ak~~---G~~~v~~~~~~~~rl~~a~~~-----~~-i~-----~~~~--~~~g~Dvvi- 205 (308)
T TIGR01202 144 KVLPDLIVGHG-TLGRLLARLTKAA---GGSPPAVWETNPRRRDGATGY-----EV-LD-----PEKD--PRRDYRAIY- 205 (308)
T ss_pred CCCcEEEECCC-HHHHHHHHHHHHc---CCceEEEeCCCHHHHHhhhhc-----cc-cC-----hhhc--cCCCCCEEE-
Confidence 45689999975 5544566666542 454 77889998887766542 11 11 1111 113689765
Q ss_pred eCCCcccHHHHH-HhccCCCceEEEE
Q 027409 120 DCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|+.-. ...++ .+..+++||.|+.
T Consensus 206 d~~G~--~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 206 DASGD--PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred ECCCC--HHHHHHHHHhhhcCcEEEE
Confidence 77543 23444 4567788898884
No 347
>PRK07904 short chain dehydrogenase; Provisional
Probab=82.57 E-value=6.4 Score=33.86 Aligned_cols=79 Identities=24% Similarity=0.092 Sum_probs=51.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchH-HHHHHHHHHhhcCce-EEEEecchHH------Hhc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERS-RLAYVKAMYDVVGWV-SEVIVRQAEE------VMG 109 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~-~~~Ar~~~~~a~G~~-I~li~GdA~e------vL~ 109 (223)
.-++++||=.|.+.|. +.+++...+ ..+ .+|+-+.++++. .+.+.+.++.. |.. ++++..|..+ .+.
T Consensus 5 ~~~~~~vlItGas~gi-G~~la~~l~--~~gg~~V~~~~r~~~~~~~~~~~~l~~~-~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 5 VGNPQTILLLGGTSEI-GLAICERYL--KNAPARVVLAALPDDPRRDAAVAQMKAA-GASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred cCCCcEEEEEcCCcHH-HHHHHHHHH--hcCCCeEEEEeCCcchhHHHHHHHHHhc-CCCceEEEEecCCChHHHHHHHH
Confidence 4578999999998773 455444333 333 588888999885 66666667766 543 7777777531 122
Q ss_pred C---CCCccEEEEeC
Q 027409 110 E---LKGVDFLVVDC 121 (223)
Q Consensus 110 ~---L~~fDfVFIDa 121 (223)
. .++.|.++.-+
T Consensus 81 ~~~~~g~id~li~~a 95 (253)
T PRK07904 81 AAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHhcCCCCEEEEee
Confidence 2 24799888654
No 348
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.57 E-value=2.9 Score=36.93 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=55.5
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------cCc-e--------EEEE-ecchHH
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------VGW-V--------SEVI-VRQAEE 106 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------~G~-~--------I~li-~GdA~e 106 (223)
++|-=||+ |+.+++++...+.. +-.|+-+|++++..+.+++.+++. .|. . .++. ..|. +
T Consensus 4 ~kI~VIG~--G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~-~ 78 (282)
T PRK05808 4 QKIGVIGA--GTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDL-D 78 (282)
T ss_pred cEEEEEcc--CHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-H
Confidence 46777877 56677776665433 457999999999988776543321 031 0 0111 1221 1
Q ss_pred HhcCCCCccEEEEeCCCccc---HHHHHHhcc-CCCceEEEEe
Q 027409 107 VMGELKGVDFLVVDCTSKDF---ARVLRFARF-SNKGAVLAFK 145 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K~~Y---~~~f~~~~~-l~~GgvIV~D 145 (223)
.+...|+||+=. +++. .++|..+.. ++++.+|+++
T Consensus 79 ---~~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~ 117 (282)
T PRK05808 79 ---DLKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATN 117 (282)
T ss_pred ---HhccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 134689988854 5544 377776644 5888877443
No 349
>PRK06949 short chain dehydrogenase; Provisional
Probab=82.35 E-value=9.5 Score=32.14 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=51.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~---- 110 (223)
..++||=.|.+.| .++.++...+ ..+.+|+.+.++++..+...+.++.. +..+.++.+|..+ .+.+
T Consensus 8 ~~k~ilItGasg~-IG~~~a~~l~--~~G~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 8 EGKVALVTGASSG-LGARFAQVLA--QAGAKVVLASRRVERLKELRAEIEAE-GGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4588999997655 4565554433 34678999999999887777777665 5456777777632 1111
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
.+++|.++.-+.
T Consensus 84 ~~~~d~li~~ag 95 (258)
T PRK06949 84 AGTIDILVNNSG 95 (258)
T ss_pred cCCCCEEEECCC
Confidence 236888877664
No 350
>PRK09028 cystathionine beta-lyase; Provisional
Probab=82.33 E-value=25 Score=33.20 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHH-HHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGL-AIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~l-a~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|..-.|=..++++.+...++=..+ |. .+|.+ ..+...+|.+|++.+.. ......+...+++. |++++++.
T Consensus 58 ~~npt~~~Le~~iA~le~~~~~~~~~s--G~--~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~-Gi~v~~v~ 132 (394)
T PRK09028 58 RGTPTHFAFQAAIVELEGGAGTALYPS--GA--AAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGF-GIETTYYD 132 (394)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECC--HH--HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhc-ceEEEEEC
Confidence 345666677777787778777774333 43 33322 22334567788887653 23444455566676 88866664
Q ss_pred cchHHHhcC-C-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+..+.|.+ + ++-.+|++-.- ......-++.+ ... +.|.++|+||++..+
T Consensus 133 ~~~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 133 PMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 443444444 3 35789999863 22223334433 333 668999999998544
No 351
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.21 E-value=12 Score=35.88 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=43.4
Q ss_pred cCCCeEEEEc-cCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEEecchHHH---hcCC-
Q 027409 40 WNAKLIVEAW-THGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIVRQAEEV---MGEL- 111 (223)
Q Consensus 40 ~~ak~ILEIG-T~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li~GdA~ev---L~~L- 111 (223)
.+.+.|+=+| +|.|=+++...||......+-++--|+.|+.+.. |.+.|+.. .|+.+.. ..++.++ |..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~g-AveQLk~yae~lgvpv~~-~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSG-AVEQFQGYADKLDVELIV-ATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCcc-HHHHHHHHhhcCCCCEEe-cCCHHHHHHHHHHHH
Confidence 3466677778 5556532333333322233446666777766542 44444433 2443322 2354443 3333
Q ss_pred --CCccEEEEeCCCc
Q 027409 112 --KGVDFLVVDCTSK 124 (223)
Q Consensus 112 --~~fDfVFIDa~K~ 124 (223)
+.+|+||||..-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 3699999998744
No 352
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=82.19 E-value=23 Score=32.82 Aligned_cols=123 Identities=9% Similarity=0.011 Sum_probs=71.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+.+|-..+++..++..++=.+++ . ++|.++.....++.+|++.+..- ......+...++. |..+.++.-
T Consensus 44 ~~~p~~~~le~~la~l~g~~~~l~~~sG--~--~al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~-G~~v~~vd~ 118 (378)
T TIGR01329 44 SGNPTRTALESLLAKLDKADRAFAFSSG--M--AALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRS-GVVVVHVDT 118 (378)
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEECCH--H--HHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHc-CcEEEEeCC
Confidence 3467788999999999999888766554 3 33333333345566777765432 2222334445566 888555543
Q ss_pred -chHHHhcCCC-CccEEEEeCCCcc--cHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 -QAEEVMGELK-GVDFLVVDCTSKD--FARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 -dA~evL~~L~-~fDfVFIDa~K~~--Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
|..++...++ +-.+|++..--.- ...-++.+ ... +.|.++|+||.+..+
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 3333333343 5789998853221 22123333 333 668999999987544
No 353
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=82.09 E-value=19 Score=33.56 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
...|.+.+|=..+++..++..++= |+.|. +++.++. +...++.+|++-... +..+......+... |..+.++.
T Consensus 58 ~~~p~~~~le~~la~l~g~~~~v~--~ssG~--~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~-G~~v~~vd 132 (390)
T PRK08133 58 FTNPTVTMFQERLAALEGAEACVA--TASGM--AAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF-GIETTFVD 132 (390)
T ss_pred CCChHHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHc-CcEEEEEC
Confidence 567888999999999999998764 45565 3433322 233455677665432 33445555667777 98866665
Q ss_pred cchHHHhcC-C-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+-.+.+.+ + ++-.+|++..- ......-++.+ ... +.|..||+||.+..+
T Consensus 133 ~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~ 188 (390)
T PRK08133 133 LTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTP 188 (390)
T ss_pred CCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 443444443 4 35789998743 21221122322 333 678999999987433
No 354
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.01 E-value=7.7 Score=34.32 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=52.3
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----CC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----EL 111 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~L 111 (223)
-++||=.|.+.|. +..++-.. ...+.+|+.+.++++..+...+.+... |..+.++.+|..+ .+. .+
T Consensus 40 ~k~vlItGasggI-G~~la~~L--a~~G~~Vi~~~R~~~~l~~~~~~l~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 40 GKRILLTGASSGI-GEAAAEQF--ARRGATVVAVARREDLLDAVADRITRA-GGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCEEEEeCCCcHH-HHHHHHHH--HHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3789999987663 45544433 334678999999998888777777766 6556677777542 122 23
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
++.|.++.-|.
T Consensus 116 g~id~li~~AG 126 (293)
T PRK05866 116 GGVDILINNAG 126 (293)
T ss_pred CCCCEEEECCC
Confidence 47899988663
No 355
>PRK07890 short chain dehydrogenase; Provisional
Probab=81.79 E-value=11 Score=31.67 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=52.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~ 110 (223)
..++||=.|.+.| .++.++...+ ..+.+|+.++++++..+...+.+... +..+.++..|..+ +...
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAA--RAGADVVLAARTAERLDEVAAEIDDL-GRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHHHHHh-CCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578998888766 4566555444 34679999999998777776666655 5556666666531 2223
Q ss_pred CCCccEEEEeCCC
Q 027409 111 LKGVDFLVVDCTS 123 (223)
Q Consensus 111 L~~fDfVFIDa~K 123 (223)
+++.|.|+.-|..
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 3578999887754
No 356
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=81.74 E-value=1.5 Score=35.52 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
+|-..+++..+..+|+|||-|.= ...+.+++ ..|-.|+++|+++. .|+ . |+ +++..|..+ |+
T Consensus 3 ~~a~~ia~~~~~~kiVEVGiG~~---~~vA~~L~--~~G~dV~~tDi~~~---~a~-----~-g~--~~v~DDif~--P~ 64 (127)
T PF03686_consen 3 DFAEYIARLNNYGKIVEVGIGFN---PEVAKKLK--ERGFDVIATDINPR---KAP-----E-GV--NFVVDDIFN--PN 64 (127)
T ss_dssp HHHHHHHHHS-SSEEEEET-TT-----HHHHHHH--HHS-EEEEE-SS-S-------------ST--TEE---SSS----
T ss_pred hHHHHHHHhCCCCcEEEECcCCC---HHHHHHHH--HcCCcEEEEECccc---ccc-----c-Cc--ceeeecccC--CC
Confidence 46667788889999999998743 34444333 23568999999998 111 2 33 455555544 33
Q ss_pred C---CCccEEE-EeCCCcccHHHHHHhcc
Q 027409 111 L---KGVDFLV-VDCTSKDFARVLRFARF 135 (223)
Q Consensus 111 L---~~fDfVF-IDa~K~~Y~~~f~~~~~ 135 (223)
+ ...|+|. |-.-.+..+..+++.+.
T Consensus 65 l~iY~~a~lIYSiRPP~El~~~il~lA~~ 93 (127)
T PF03686_consen 65 LEIYEGADLIYSIRPPPELQPPILELAKK 93 (127)
T ss_dssp HHHHTTEEEEEEES--TTSHHHHHHHHHH
T ss_pred HHHhcCCcEEEEeCCChHHhHHHHHHHHH
Confidence 3 3566665 34445555555555543
No 357
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.50 E-value=5.4 Score=37.21 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=50.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcCC--CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGEL--KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~L--~~fDf 116 (223)
..++|+=+|+ |..+.. ++......+..++-||.|++..+..++.+. .+.++.||+. +.|.+. +.+|.
T Consensus 230 ~~~~iiIiG~--G~~g~~--l~~~L~~~~~~v~vid~~~~~~~~~~~~~~-----~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYY--LAKLLEKEGYSVKLIERDPERAEELAEELP-----NTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCEEEEECC--CHHHHH--HHHHHHhCCCeEEEEECCHHHHHHHHHHCC-----CCeEEECCCCCHHHHHhcCCccCCE
Confidence 3578999998 454444 444444446689999999998777665432 2578999994 467654 58999
Q ss_pred EEEeCC
Q 027409 117 LVVDCT 122 (223)
Q Consensus 117 VFIDa~ 122 (223)
|++=..
T Consensus 301 vi~~~~ 306 (453)
T PRK09496 301 FIALTN 306 (453)
T ss_pred EEECCC
Confidence 988543
No 358
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.50 E-value=2.5 Score=34.16 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
++-..+++.+++.+|+|||-|. -+..|......+.-|+.+|+++. .+ +..+++...|-.. |+
T Consensus 3 e~a~~iAre~~~gkVvEVGiG~-----~~~VA~~L~e~g~dv~atDI~~~----------~a-~~g~~~v~DDitn--P~ 64 (129)
T COG1255 3 EVAEYIARENARGKVVEVGIGF-----FLDVAKRLAERGFDVLATDINEK----------TA-PEGLRFVVDDITN--PN 64 (129)
T ss_pred cHHHHHHHHhcCCcEEEEccch-----HHHHHHHHHHcCCcEEEEecccc----------cC-cccceEEEccCCC--cc
Confidence 3556778899999999999863 22344444445677999999987 33 4115676666543 23
Q ss_pred C---CCccEEE-EeCCCcccHHHHHHhccC
Q 027409 111 L---KGVDFLV-VDCTSKDFARVLRFARFS 136 (223)
Q Consensus 111 L---~~fDfVF-IDa~K~~Y~~~f~~~~~l 136 (223)
+ ..-|+|. |-+-.+.....++..+.+
T Consensus 65 ~~iY~~A~lIYSiRpppEl~~~ildva~aV 94 (129)
T COG1255 65 ISIYEGADLIYSIRPPPELQSAILDVAKAV 94 (129)
T ss_pred HHHhhCccceeecCCCHHHHHHHHHHHHhh
Confidence 2 3566665 333344444444444433
No 359
>PRK08643 acetoin reductase; Validated
Probab=81.37 E-value=8.9 Score=32.42 Aligned_cols=75 Identities=11% Similarity=0.120 Sum_probs=50.2
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----CC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE----LK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~----L~ 112 (223)
|.+|=+|.+.| .++.++.+.+ ..+.+|+.++++++..+.....+.+. +-.+.++..|..+ .+.+ ++
T Consensus 3 k~~lItGas~g-iG~~la~~l~--~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQG-IGFAIAKRLV--EDGFKVAIVDYNEETAQAAADKLSKD-GGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCCh-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57888888766 4565554433 34678999999998888777777776 5556666666532 2222 24
Q ss_pred CccEEEEeC
Q 027409 113 GVDFLVVDC 121 (223)
Q Consensus 113 ~fDfVFIDa 121 (223)
+.|.++.-|
T Consensus 79 ~id~vi~~a 87 (256)
T PRK08643 79 DLNVVVNNA 87 (256)
T ss_pred CCCEEEECC
Confidence 689888766
No 360
>PRK07677 short chain dehydrogenase; Provisional
Probab=81.34 E-value=8.1 Score=32.73 Aligned_cols=76 Identities=9% Similarity=0.031 Sum_probs=50.2
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH----------HHhcCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE----------EVMGELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~----------evL~~L~ 112 (223)
|++|=.|.+.|. +.+++...+ ..+.+|+.++++++..+...+.++.. +-.+.++..|.. +++..++
T Consensus 2 k~~lItG~s~gi-G~~ia~~l~--~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGM-GKAMAKRFA--EEGANVVITGRTKEKLEEAKLEIEQF-PGQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 578888888663 555554433 34678999999988877777777665 544777777642 1222234
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
+.|.++.-+.
T Consensus 78 ~id~lI~~ag 87 (252)
T PRK07677 78 RIDALINNAA 87 (252)
T ss_pred CccEEEECCC
Confidence 6898887653
No 361
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=81.25 E-value=17 Score=30.75 Aligned_cols=95 Identities=18% Similarity=0.045 Sum_probs=53.8
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--- 111 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--- 111 (223)
.....-++||=.|...+.+..++.+|.+ .+.+++.+..++++.+.+++ . |.. +.....+..+.+..+
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~---~g~~v~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~ 203 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKA---LGATVIGTVSSEEKAELARA----A-GADHVINYRDEDFVERVREITGG 203 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHH----C-CCCEEEeCCchhHHHHHHHHcCC
Confidence 3344557888888654443355555544 36788888888887666543 4 543 222222333434433
Q ss_pred CCccEEEEeCCCcccHHHHH-HhccCCCceEEE
Q 027409 112 KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLA 143 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV 143 (223)
..+|++| |+.... ..+ .++.++++|.++
T Consensus 204 ~~~d~vl-~~~~~~---~~~~~~~~l~~~g~~v 232 (320)
T cd05286 204 RGVDVVY-DGVGKD---TFEGSLDSLRPRGTLV 232 (320)
T ss_pred CCeeEEE-ECCCcH---hHHHHHHhhccCcEEE
Confidence 2699887 775442 333 345566666655
No 362
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.24 E-value=15 Score=32.66 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=55.5
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCcc
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fD 115 (223)
....-++||=.|+ .+.+..++.+|.+ -+.+++.++.++++.+.+++ . |.. +.....+..+.+.++..+|
T Consensus 160 ~~~~~~~vlV~g~-g~iG~~~~~~a~~---~G~~vi~~~~~~~~~~~~~~----~-g~~~~i~~~~~~~~~~~~~~~~~d 230 (333)
T cd08296 160 GAKPGDLVAVQGI-GGLGHLAVQYAAK---MGFRTVAISRGSDKADLARK----L-GAHHYIDTSKEDVAEALQELGGAK 230 (333)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHH---CCCeEEEEeCChHHHHHHHH----c-CCcEEecCCCccHHHHHHhcCCCC
Confidence 3344568888884 4544444555544 25679999999887666643 4 543 3333334444455455789
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
+++ |+.- ....++ .++.++++|.++.
T Consensus 231 ~vi-~~~g--~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 231 LIL-ATAP--NAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred EEE-ECCC--chHHHHHHHHHcccCCEEEE
Confidence 887 6531 233444 4566677777663
No 363
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=81.23 E-value=17 Score=33.06 Aligned_cols=94 Identities=20% Similarity=0.127 Sum_probs=55.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEec--chHHHhcCC--
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR--QAEEVMGEL-- 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G--dA~evL~~L-- 111 (223)
...-.+||=.|++ +.+..++.+|.+. +. +|+.++.++++.+.|++ . |.. |....- +..+.+.++
T Consensus 184 ~~~g~~VlV~G~G-~vG~~a~~~ak~~---G~~~vi~~~~~~~~~~~~~~----l-Ga~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLG-AVGLAVIQGAKAA---GASRIIGIDINPDKFELAKK----F-GATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHH----c-CCCEEEcccccchHHHHHHHHHhC
Confidence 3456788888863 5544555565542 55 79999999998777654 4 654 333322 244444443
Q ss_pred CCccEEEEeCCCcccHHHHH-HhccCCCc-eEEEE
Q 027409 112 KGVDFLVVDCTSKDFARVLR-FARFSNKG-AVLAF 144 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~ 144 (223)
..+|+|| |+--. ...+. .+..+++| |.++.
T Consensus 255 ~g~d~vi-d~~g~--~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 255 GGVDYTF-ECIGN--VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred CCCcEEE-ECCCC--hHHHHHHHHhhccCCCeEEE
Confidence 2699876 76432 22343 45666665 65553
No 364
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=81.22 E-value=9.5 Score=36.20 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=71.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+.+|-..|++..+++..+=. +.|. .+|.++. +...++.+|++.+.. ..........+... |..+.+..
T Consensus 55 ~~~pt~~~Le~~lA~l~g~~~~l~~--ssG~--~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~-gi~v~~~d 129 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGGVGALAV--ASGM--AAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRI-GIETRFAA 129 (425)
T ss_pred CCCchHHHHHHHHHHHhCCCceeEe--hhHH--HHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccc-eeEEEEEC
Confidence 5688899999999999998887744 4454 3333332 233456788876542 11333344444445 76666665
Q ss_pred cchHHHhcC-C-CCccEEEEeC--CCcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDC--TSKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa--~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+-.+.|.+ + +.-.+|++.. +.....--++.+ ... +.|.+||+||.+..+
T Consensus 130 ~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~ 185 (425)
T PRK06084 130 HDDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATP 185 (425)
T ss_pred CCCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 443444443 3 3578999963 222221112333 333 568899999997644
No 365
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=81.13 E-value=6.7 Score=33.09 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=51.7
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH------------
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE------------ 105 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~------------ 105 (223)
....+.||=.|.+.| .++.++...+ ..+.+|+.++++++..+...+.+++. +-. +.++.+|..
T Consensus 9 ~~~~k~vlItG~~g~-iG~~la~~l~--~~G~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~d~~~~~~~~~~~~~~ 84 (247)
T PRK08945 9 LLKDRIILVTGAGDG-IGREAALTYA--RHGATVILLGRTEEKLEAVYDEIEAA-GGPQPAIIPLDLLTATPQNYQQLAD 84 (247)
T ss_pred ccCCCEEEEeCCCch-HHHHHHHHHH--HCCCcEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEecccCCCHHHHHHHHH
Confidence 346788999997755 4565554433 34679999999988777666667665 543 666666653
Q ss_pred HHhcCCCCccEEEEeCC
Q 027409 106 EVMGELKGVDFLVVDCT 122 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~ 122 (223)
++...+.+.|.|+.=|.
T Consensus 85 ~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 85 TIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHhCCCCEEEECCc
Confidence 12222347898887553
No 366
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.12 E-value=13 Score=33.07 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=56.6
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------cCce--------E-EEEecchHH
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------VGWV--------S-EVIVRQAEE 106 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------~G~~--------I-~li~GdA~e 106 (223)
-++|-=||+| ..+++|+...+. .+-.|+-.|++++..+.+++.+++. .|.- . .+...+-.+
T Consensus 4 ~~~V~vIG~G--~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (295)
T PLN02545 4 IKKVGVVGAG--QMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE 79 (295)
T ss_pred cCEEEEECCC--HHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH
Confidence 4678788885 556676655443 2458999999999988877765432 0210 0 011112222
Q ss_pred HhcCCCCccEEEEeCC--CcccHHHHHHhc-cCCCceEEEEe
Q 027409 107 VMGELKGVDFLVVDCT--SKDFARVLRFAR-FSNKGAVLAFK 145 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~--K~~Y~~~f~~~~-~l~~GgvIV~D 145 (223)
.+ ..-|+||.=.. .+.-..+|..+. .++++.+|+.+
T Consensus 80 ~~---~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~ 118 (295)
T PLN02545 80 EL---RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASN 118 (295)
T ss_pred Hh---CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 22 45798887554 444456676554 45777766644
No 367
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=81.04 E-value=15 Score=34.90 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+..|-..|+...+++..+=.++| .++..+++. +...++.+|++.+.. +......+..+++. |..+.++..
T Consensus 61 ~~~p~~~~Le~~lA~leg~~~al~~~sG--~~Ai~~al~-~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~-Gv~v~~vd~ 136 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEGGIGALAVSSG--QAAITYSIL-NIASAGDEIVSSSSLYGGTYNLFAHTLPKL-GITVKFVDP 136 (431)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECCH--HHHHHHHHH-HHhCCCCEEEEccCchhhHHHHHHHHHHhC-CEEEEEECC
Confidence 5688899999999999999888766554 322332222 223456677766532 23334455556677 888666654
Q ss_pred chHHHhcC-C-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGE-L-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~-L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+.+ + ++.++|++..- ......-++.+ ... +.|.+||+||++..+
T Consensus 137 ~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 137 SDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 43444443 4 36889999732 11111112222 332 558899999997533
No 368
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=80.94 E-value=6.1 Score=36.79 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=52.8
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcC--CCCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGE--LKGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~--L~~fDfVF 118 (223)
+.||=+|.+.|++..++.||.+.. . .+++|+ ...+..+.+|+ . |-. ++....|..|.+.+ ..+||+||
T Consensus 159 ~~vLv~ggsggVG~~aiQlAk~~~-~-~~v~t~-~s~e~~~l~k~----l-GAd~vvdy~~~~~~e~~kk~~~~~~DvVl 230 (347)
T KOG1198|consen 159 KSVLVLGGSGGVGTAAIQLAKHAG-A-IKVVTA-CSKEKLELVKK----L-GADEVVDYKDENVVELIKKYTGKGVDVVL 230 (347)
T ss_pred CeEEEEeCCcHHHHHHHHHHHhcC-C-cEEEEE-cccchHHHHHH----c-CCcEeecCCCHHHHHHHHhhcCCCccEEE
Confidence 499999999999888888886542 1 455554 44555555544 4 655 88888888887776 35899875
Q ss_pred EeCCCcccH
Q 027409 119 VDCTSKDFA 127 (223)
Q Consensus 119 IDa~K~~Y~ 127 (223)
||--..|.
T Consensus 231 -D~vg~~~~ 238 (347)
T KOG1198|consen 231 -DCVGGSTL 238 (347)
T ss_pred -ECCCCCcc
Confidence 88766543
No 369
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=80.88 E-value=12 Score=31.25 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=52.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc--CCCCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG--ELKGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~--~L~~fD 115 (223)
..-++||-.|++. .+..++.++.+ .+.+++.++.++++.+.+++ . |.. +.....+..+.+. .-.++|
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~---~g~~v~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKA---AGARVIVTDRSDEKLELAKE----L-GADHVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHH----h-CCceeccCCcCCHHHHHHHhcCCCCC
Confidence 4567899999874 32244445433 35789999999887666644 3 332 3333333333221 124799
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
++| |+... + ..+. .+..++++|.++.
T Consensus 204 ~vi-~~~~~-~-~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 204 VVI-DAVGG-P-ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred EEE-ECCCC-H-HHHHHHHHhcccCCEEEE
Confidence 987 54332 1 2333 3455567777664
No 370
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.84 E-value=2.5 Score=40.33 Aligned_cols=101 Identities=12% Similarity=0.028 Sum_probs=52.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCC---Ccc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELK---GVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~---~fD 115 (223)
..|++||++|-|-|. ++|-+...-|+=-..+-+|-+|...+.. ..+++-++.+ ..-..+|..+-...|. .|+
T Consensus 112 fapqsiLDvG~GPgt---gl~A~n~i~Pdl~sa~ile~sp~lrkV~-~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 112 FAPQSILDVGAGPGT---GLWALNDIWPDLKSAVILEASPALRKVG-DTLAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred cCcchhhccCCCCch---hhhhhcccCCCchhhhhhccCHHHHHHH-HHHHhhcccccCCCCCCccchhccCCCccceee
Confidence 479999999999874 6564433333323355567666543322 2233221333 4445555544333342 477
Q ss_pred EEEE------eCCCcccHHHHHH-hccCCCceEEEE
Q 027409 116 FLVV------DCTSKDFARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFI------Da~K~~Y~~~f~~-~~~l~~GgvIV~ 144 (223)
++.+ |.....-..+++. ..++.+||.+|.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 7654 3322222225553 356677887764
No 371
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=80.78 E-value=21 Score=32.07 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=50.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
.-++||=.|+ .|.+..++.+|.+ .+.+++.++.++++.+.|++ . |.. |... +. .-+.+|.++
T Consensus 165 ~g~~VlV~G~-g~iG~~a~~~a~~---~G~~vi~~~~~~~~~~~a~~----~-Ga~~vi~~~--~~-----~~~~~d~~i 228 (329)
T TIGR02822 165 PGGRLGLYGF-GGSAHLTAQVALA---QGATVHVMTRGAAARRLALA----L-GAASAGGAY--DT-----PPEPLDAAI 228 (329)
T ss_pred CCCEEEEEcC-CHHHHHHHHHHHH---CCCeEEEEeCChHHHHHHHH----h-CCceecccc--cc-----CcccceEEE
Confidence 4468888886 3443233444443 36789999999998776655 5 665 2211 10 013588765
Q ss_pred E-eCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 119 V-DCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 119 I-Da~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
. |+. ...+. .++.+++||.++.=-
T Consensus 229 ~~~~~----~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA----GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc----HHHHHHHHHhhCCCcEEEEEe
Confidence 4 332 23454 556778888887533
No 372
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=80.44 E-value=13 Score=31.13 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=47.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hh----cCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VM----GELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL----~~L~ 112 (223)
|.+|=.|++.| .+..++.. ....+.+|+.+.++++..+...+.+... |..+.++..|..+ .+ +.+.
T Consensus 1 k~~lItG~sg~-iG~~la~~--l~~~G~~v~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 76 (254)
T TIGR02415 1 KVALVTGGAQG-IGKGIAER--LAKDGFAVAVADLNEETAKETAKEINQA-GGKAVAYKLDVSDKDQVFSAIDQAAEKFG 76 (254)
T ss_pred CEEEEeCCCch-HHHHHHHH--HHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788887644 45554443 3345678999999887776666666666 6667777776421 12 2234
Q ss_pred CccEEEEeC
Q 027409 113 GVDFLVVDC 121 (223)
Q Consensus 113 ~fDfVFIDa 121 (223)
+.|.|+.-+
T Consensus 77 ~id~vi~~a 85 (254)
T TIGR02415 77 GFDVMVNNA 85 (254)
T ss_pred CCCEEEECC
Confidence 678887755
No 373
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=80.43 E-value=18 Score=32.06 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=53.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
..-.+||=.|+ .+.+..++.+|.+ .+ .+++.++.++++...+++ . |.. +.....+..+.+.++ .+
T Consensus 165 ~~g~~vlI~g~-g~~g~~~~~~a~~---~G~~~v~~~~~~~~~~~~~~~----~-g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 165 KPGDTVAIVGA-GPVGLAALLTAQL---YSPSKIIMVDLDDNRLEVAKK----L-GATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHH----h-CCCceeccccccHHHHHHHHhCCCC
Confidence 34556666664 3443344455543 24 578889998887666664 3 543 444444544444433 36
Q ss_pred ccEEEEeCCCcccHHHHHHh-ccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+|.|| |+-- -...++.+ +.++++|.+|.
T Consensus 236 ~d~vl-d~~g--~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 236 VDVVI-EAVG--IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCEEE-ECCC--CHHHHHHHHHhccCCcEEEE
Confidence 99776 8752 23345533 66777777763
No 374
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=80.41 E-value=24 Score=32.01 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=44.4
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-HHhhcCce----EEEE-ecchHHHhcCCCCccEE
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWV----SEVI-VRQAEEVMGELKGVDFL 117 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-~~~a~G~~----I~li-~GdA~evL~~L~~fDfV 117 (223)
+|--||+ |+.+++++.+.|.... +.|+.+|++++. ..++.. +.+. +.. .++. .+|..+ + ..-|+|
T Consensus 3 KV~VIGa--G~vG~~iA~~la~~g~-~~VvlvDi~~~l-~~g~a~d~~~~-~~~~~~~~~i~~t~d~~~-~---~~aDiV 73 (305)
T TIGR01763 3 KISVIGA--GFVGATTAFRLAEKEL-ADLVLLDVVEGI-PQGKALDMYEA-SPVGGFDTKVTGTNNYAD-T---ANSDIV 73 (305)
T ss_pred EEEEECc--CHHHHHHHHHHHHcCC-CeEEEEeCCCCh-hHHHHHhhhhh-hhccCCCcEEEecCCHHH-h---CCCCEE
Confidence 6778897 6777888877665432 379999998774 333322 3233 221 3444 355433 3 468999
Q ss_pred EEeCCC
Q 027409 118 VVDCTS 123 (223)
Q Consensus 118 FIDa~K 123 (223)
||=+..
T Consensus 74 Iitag~ 79 (305)
T TIGR01763 74 VITAGL 79 (305)
T ss_pred EEcCCC
Confidence 998874
No 375
>PRK07503 methionine gamma-lyase; Provisional
Probab=80.40 E-value=19 Score=33.82 Aligned_cols=123 Identities=10% Similarity=0.031 Sum_probs=70.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+.+|=..|++..++...+= ++.|- ++|.++. +...++.+|++....- ......+..+... |..+.++.
T Consensus 62 ~~~p~~~~le~~lA~l~g~~~~i~--~~sG~--~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~-G~~v~~vd 136 (403)
T PRK07503 62 ISNPTLALLEQRMASLEGGEAAVA--LASGM--GAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEF-GVTVRHVD 136 (403)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEE--EcCHH--HHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhC-CEEEEEeC
Confidence 568889999999999999887644 44554 3443332 2345566777754321 1223344445566 88766654
Q ss_pred cchHHHhc-CC-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMG-EL-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~-~L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+-.+.|. .+ ++-.+|++..- ......-++.+ ... +.|.+||.||.+..+
T Consensus 137 ~~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~ 192 (403)
T PRK07503 137 LTDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTP 192 (403)
T ss_pred CCCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 43333343 34 36789998632 22222112323 232 568899999987543
No 376
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=80.36 E-value=28 Score=32.49 Aligned_cols=123 Identities=13% Similarity=0.122 Sum_probs=70.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+.+|=..+++..++..+|=.++ |. +++.++. +...++.+|++.+..-......-+.+... |..+.+..-
T Consensus 50 ~~np~~~~lE~~lA~l~g~~~~l~~~s--G~--~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~-g~~v~~~~~ 124 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGGVDALAFNS--GM--AAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKF-GVKVVLAYP 124 (385)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEeCC--HH--HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhcc-CcEEEEECC
Confidence 446778888888999999988876544 54 3443332 23445667766554332222222224555 777555544
Q ss_pred chHHHhcCC-C-CccEEEEeCCC--cccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGEL-K-GVDFLVVDCTS--KDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~L-~-~fDfVFIDa~K--~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
|..++...+ + +-++||+..-- ....-=++.+ ... +.|..||+||.+..+
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~ 179 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATP 179 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 533333334 3 57899997532 1111113333 333 678999999997544
No 377
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=80.26 E-value=1.9 Score=42.29 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc
Q 027409 32 LLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG 109 (223)
Q Consensus 32 fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~ 109 (223)
-...+.+..++-+|||.=+++|. -+|-.|.-. +.-+.|+.-|.|+...+.-++|.+.- +++ ++...+||.-.+-
T Consensus 100 t~~~~~~~~~~l~vLealsAtGl--rslRya~El-~~v~~v~AnD~~~~aV~~i~~Nv~~N-~v~~ive~~~~DA~~lM~ 175 (525)
T KOG1253|consen 100 TAALLKREEKSLRVLEALSATGL--RSLRYAKEL-PGVRQVVANDLNENAVTSIQRNVELN-GVEDIVEPHHSDANVLMY 175 (525)
T ss_pred ccchhhhccCcchHHHHhhhhhH--HHHHHHHHh-cchhhhcccCCCHHHHHHHHhhhhhc-CchhhcccccchHHHHHH
Confidence 46677888899999999999988 888777543 33468999999999999999999887 777 9999999988665
Q ss_pred CC----CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 110 EL----KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 110 ~L----~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
.. ..||+|=+|-- +--..|++ +++-++.||++.+-
T Consensus 176 ~~~~~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 176 EHPMVAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred hccccccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEE
Confidence 43 36888766652 23356787 56778999998753
No 378
>PRK07832 short chain dehydrogenase; Provisional
Probab=80.25 E-value=30 Score=29.68 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=46.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH----------HHhcCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE----------EVMGEL 111 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~----------evL~~L 111 (223)
+++|=+|.+.|. +..++...+ ..+.+|+.+.++++..+...+.+... +-. +.++.+|.. ++....
T Consensus 1 k~vlItGas~gi-G~~la~~la--~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (272)
T PRK07832 1 KRCFVTGAASGI-GRATALRLA--AQGAELFLTDRDADGLAQTVADARAL-GGTVPEHRALDISDYDAVAAFAADIHAAH 76 (272)
T ss_pred CEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEeeCCCHHHHHHHHHHHHHhc
Confidence 357778887663 444444333 34678888999988777666666654 433 444555542 122233
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
++.|.++.=+.
T Consensus 77 ~~id~lv~~ag 87 (272)
T PRK07832 77 GSMDVVMNIAG 87 (272)
T ss_pred CCCCEEEECCC
Confidence 46898887653
No 379
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=80.20 E-value=4.8 Score=35.19 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=34.6
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCC------CcEEEEEeCCchHHHHHHHHHHhh
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHT------CARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~------~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
+-+|+|+|.|.|.-+.- ++.+.... ..+++-||.+|...+..++.++..
T Consensus 19 ~~~ivE~GaG~G~La~d--iL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~ 73 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARD--ILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEH 73 (252)
T ss_dssp -EEEEEES-TTSHHHHH--HHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred CcEEEEECCCchHHHHH--HHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhh
Confidence 45899999999984443 33333322 258999999999999999998874
No 380
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.04 E-value=9.6 Score=34.71 Aligned_cols=79 Identities=18% Similarity=0.107 Sum_probs=53.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH-----H-Hhc----
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE-----E-VMG---- 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~-----e-vL~---- 109 (223)
..-+.||=.|.+.|. +.+++...+ ..+.+|+-+.++++..+...+.++.. |.++.++..|.. + .+.
T Consensus 5 l~~k~vlITGAs~GI-G~aia~~la--~~G~~Vvl~~R~~~~l~~~~~~~~~~-g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 5 LHGAVVVITGASSGI-GQATAEAFA--RRGARLVLAARDEEALQAVAEECRAL-GAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CCCCEEEEcCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 345789999988774 455444433 34789999999999988888888877 766555555542 1 111
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
.+.++|.++.-|.
T Consensus 81 ~~g~iD~lVnnAG 93 (330)
T PRK06139 81 FGGRIDVWVNNVG 93 (330)
T ss_pred hcCCCCEEEECCC
Confidence 1247899988765
No 381
>PRK06914 short chain dehydrogenase; Provisional
Probab=80.03 E-value=8.9 Score=32.96 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=50.4
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH---------HhcCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE---------VMGEL 111 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e---------vL~~L 111 (223)
|.+|=.|.+.| .+++++...+ ..+.+|+.+.++++..+...+..+.. +.. ++++.+|..+ +...+
T Consensus 4 k~~lItGasg~-iG~~la~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 4 KIAIVTGASSG-FGLLTTLELA--KKGYLVIATMRNPEKQENLLSQATQL-NLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CEEEEECCCch-HHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 57888887755 4566554433 34678999999988777666666655 543 7788777633 22233
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
++.|.|+.-|.
T Consensus 80 ~~id~vv~~ag 90 (280)
T PRK06914 80 GRIDLLVNNAG 90 (280)
T ss_pred CCeeEEEECCc
Confidence 56898888764
No 382
>PLN02602 lactate dehydrogenase
Probab=80.03 E-value=35 Score=31.89 Aligned_cols=78 Identities=9% Similarity=0.155 Sum_probs=53.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L~~fDfV 117 (223)
++++|.=||+ |..+++++++.+..+-...|+=+|++++.++...--+..+..+. +++.. +| .+. +..-|+|
T Consensus 36 ~~~KI~IIGa--G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d-y~~---~~daDiV 109 (350)
T PLN02602 36 RHTKVSVVGV--GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD-YAV---TAGSDLC 109 (350)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC-HHH---hCCCCEE
Confidence 3479999996 55678888877666555789999999987665555566651221 55554 34 232 4579999
Q ss_pred EEeCCCc
Q 027409 118 VVDCTSK 124 (223)
Q Consensus 118 FIDa~K~ 124 (223)
+|-|...
T Consensus 110 VitAG~~ 116 (350)
T PLN02602 110 IVTAGAR 116 (350)
T ss_pred EECCCCC
Confidence 9998753
No 383
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=79.98 E-value=11 Score=36.11 Aligned_cols=82 Identities=20% Similarity=0.132 Sum_probs=50.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchH------------HHHHHHHHHhhcCceEEEEecchHH-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERS------------RLAYVKAMYDVVGWVSEVIVRQAEE- 106 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~------------~~~Ar~~~~~a~G~~I~li~GdA~e- 106 (223)
.++|++|=+|.+.|++ .+...|.+. ..|+.++.+..+.+. .+..++..++. |..+..+.+|+.+
T Consensus 39 ~ggK~aLVTGaSsGIG-lA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~-G~~a~~i~~DVss~ 115 (398)
T PRK13656 39 NGPKKVLVIGASSGYG-LASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAA-GLYAKSINGDAFSD 115 (398)
T ss_pred CCCCEEEEECCCchHh-HHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhc-CCceEEEEcCCCCH
Confidence 6789999999999973 332245555 557776666543221 12234445555 7656677888742
Q ss_pred -----Hhc----CCCCccEEEEeCCCc
Q 027409 107 -----VMG----ELKGVDFLVVDCTSK 124 (223)
Q Consensus 107 -----vL~----~L~~fDfVFIDa~K~ 124 (223)
++. +++.+|+++--++..
T Consensus 116 E~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 116 EIKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 222 235789988887655
No 384
>PRK07454 short chain dehydrogenase; Provisional
Probab=79.98 E-value=14 Score=30.95 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=50.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--H----hc----C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--V----MG----E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--v----L~----~ 110 (223)
.-|++|=.|.+.|. +..+ +......+.+|+.++++++..+...+.++.. +..+.++.+|..+ . +. .
T Consensus 5 ~~k~vlItG~sg~i-G~~l--a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 5 SMPRALITGASSGI-GKAT--ALAFAKAGWDLALVARSQDALEALAAELRST-GVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCEEEEeCCCchH-HHHH--HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34788989976553 4444 3333345678999999988776666666665 5457778887632 1 22 1
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
..+.|.++.-+.
T Consensus 81 ~~~id~lv~~ag 92 (241)
T PRK07454 81 FGCPDVLINNAG 92 (241)
T ss_pred cCCCCEEEECCC
Confidence 246899987664
No 385
>PRK06234 methionine gamma-lyase; Provisional
Probab=79.97 E-value=33 Score=32.04 Aligned_cols=122 Identities=15% Similarity=0.081 Sum_probs=70.4
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEec
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
-+|...+|-..|++..+...++=+++ |. +++.++. +...++.+|++.+..- .........++.. |..+.++..
T Consensus 62 ~~p~~~~Le~~iA~~~g~~~~l~~~s--G~--~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~-G~~v~~vd~ 136 (400)
T PRK06234 62 GNPTSTEVENKLALLEGGEAAVVAAS--GM--GAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRY-GVEVTFVDT 136 (400)
T ss_pred CCccHHHHHHHHHHHhCCCcEEEEcC--HH--HHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhC-CeEEEEECC
Confidence 46888899999999999888766555 44 2333222 3345566777665322 2333334445666 888555544
Q ss_pred -chHHHhcCC-CCccEEEEeCC--Ccc----cHHHHHHhccCCCceEEEEeCCCCCC
Q 027409 103 -QAEEVMGEL-KGVDFLVVDCT--SKD----FARVLRFARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 -dA~evL~~L-~~fDfVFIDa~--K~~----Y~~~f~~~~~l~~GgvIV~DNvl~~g 151 (223)
|..++...+ +.-++||+..- ... ..++.++++..++|.++|+||.+..+
T Consensus 137 ~d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 137 SNLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred CCHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 333333334 35789998742 111 12233333333358999999987544
No 386
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.94 E-value=14 Score=31.91 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=51.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc---CC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG---EL 111 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~---~L 111 (223)
.-|.+|=.|.+.|. +.+++...+ ..|.+|+-++++++..+.+.+.+++..+..+.++.+|..+ .+. ++
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGI-GFGVARVLA--RAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCEEEEeCCCCcH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 45788888888774 555555443 3478999999999888877777765314346777777532 122 22
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
+++|.++.-|.
T Consensus 84 g~iD~lv~nag 94 (263)
T PRK08339 84 GEPDIFFFSTG 94 (263)
T ss_pred CCCcEEEECCC
Confidence 46898887764
No 387
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.86 E-value=6.9 Score=37.29 Aligned_cols=83 Identities=8% Similarity=0.005 Sum_probs=53.0
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchH-HHhcCCCCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAE-EVMGELKGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~-evL~~L~~fDfVF 118 (223)
++||=||+| | .+++++.-.|. ..++.|+.-+++++..+.+......- ++ ++.-..+|+ +.| ..+|+|+
T Consensus 2 ~~ilviGaG-~-Vg~~va~~la~-~~d~~V~iAdRs~~~~~~i~~~~~~~--v~~~~vD~~d~~al~~li---~~~d~VI 73 (389)
T COG1748 2 MKILVIGAG-G-VGSVVAHKLAQ-NGDGEVTIADRSKEKCARIAELIGGK--VEALQVDAADVDALVALI---KDFDLVI 73 (389)
T ss_pred CcEEEECCc-h-hHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHhhcccc--ceeEEecccChHHHHHHH---hcCCEEE
Confidence 689999995 4 46776655453 33489999999999887777664221 11 333334343 233 4578777
Q ss_pred EeCCCcccHHHHHHh
Q 027409 119 VDCTSKDFARVLRFA 133 (223)
Q Consensus 119 IDa~K~~Y~~~f~~~ 133 (223)
.=+-..++...++++
T Consensus 74 n~~p~~~~~~i~ka~ 88 (389)
T COG1748 74 NAAPPFVDLTILKAC 88 (389)
T ss_pred EeCCchhhHHHHHHH
Confidence 666666666666655
No 388
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=79.84 E-value=16 Score=33.33 Aligned_cols=93 Identities=19% Similarity=0.138 Sum_probs=52.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC--C
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL--K 112 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L--~ 112 (223)
..-.+||=.|++ +.+..++.+|.+ -++ +|+.++.++++.+.|++ . |.. +.... .+..+.+.++ .
T Consensus 184 ~~g~~VlV~G~G-~iG~~a~q~Ak~---~G~~~Vi~~~~~~~~~~~a~~----~-Ga~~~i~~~~~~~~~~~~v~~~~~~ 254 (368)
T TIGR02818 184 EEGDTVAVFGLG-GIGLSVIQGARM---AKASRIIAIDINPAKFELAKK----L-GATDCVNPNDYDKPIQEVIVEITDG 254 (368)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHH----h-CCCeEEcccccchhHHHHHHHHhCC
Confidence 345688888863 544455556554 255 79999999998887755 3 554 33321 1122333333 2
Q ss_pred CccEEEEeCCCcccHHHH-HHhccCCCc-eEEEE
Q 027409 113 GVDFLVVDCTSKDFARVL-RFARFSNKG-AVLAF 144 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f-~~~~~l~~G-gvIV~ 144 (223)
.+|+|| |+.-. ...+ +.+..+++| |.++.
T Consensus 255 g~d~vi-d~~G~--~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 255 GVDYSF-ECIGN--VNVMRAALECCHKGWGESII 285 (368)
T ss_pred CCCEEE-ECCCC--HHHHHHHHHHhhcCCCeEEE
Confidence 689765 77432 2334 345666664 66554
No 389
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.68 E-value=14 Score=32.60 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=52.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
...++||-.|+ .+.+..++.+|.+. + +++++++.++++.+.+++ . |.. +.....+..+.+.++ ..
T Consensus 166 ~~~~~VlI~g~-g~vg~~~iqlak~~---g~~~v~~~~~~~~~~~~~~~----~-g~~~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 166 KPGSTVAVIGA-GPVGLCAVAGARLL---GAARIIAVDSNPERLDLAKE----A-GATDIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHc---CCCEEEEEeCCHHHHHHHHH----h-CCcEEEcCCcchHHHHHHHHcCCCC
Confidence 34567777654 33333555666542 4 478888888877666554 3 432 333333444444433 36
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
+|++| |+-... ..+. .++.++++|.++.
T Consensus 237 ~d~vl-d~~g~~--~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 237 VDCVI-EAVGFE--ETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CcEEE-EccCCH--HHHHHHHHHhhcCCEEEE
Confidence 99776 764432 2443 4466677787763
No 390
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=79.67 E-value=20 Score=33.20 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc---------------------hHHHHHHHHHHhhcCce--E
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE---------------------RSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~---------------------e~~~~Ar~~~~~a~G~~--I 97 (223)
+.++||=||+| | .+|.++..++... =|+|+=+|.|. .+.+.|++.+++. +-. |
T Consensus 23 ~~~~VlVvG~G-g-lGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v 98 (339)
T PRK07688 23 REKHVLIIGAG-A-LGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRV 98 (339)
T ss_pred cCCcEEEECCC-H-HHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEE
Confidence 55779999997 4 3466655555432 37899999873 4567788888876 433 6
Q ss_pred EEEecchHH-HhcC-CCCccEEEEeCCCcccHHHH
Q 027409 98 EVIVRQAEE-VMGE-LKGVDFLVVDCTSKDFARVL 130 (223)
Q Consensus 98 ~li~GdA~e-vL~~-L~~fDfVFIDa~K~~Y~~~f 130 (223)
+.+..+..+ .+.. +..||+|+.=.+.......+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~l 133 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDATDNFETRFIV 133 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHH
Confidence 666665422 2222 46799765433544333334
No 391
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.67 E-value=21 Score=35.65 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhc---------CCCeEEEEc-cCcchHHHHHH--HHHhc-CCC-CcEEEEEeCCchHHHHHHHHHHhhcC
Q 027409 29 VAELLSAMAAGW---------NAKLIVEAW-THGGPITTSIG--LAIAA-RHT-CARHVCIVPDERSRLAYVKAMYDVVG 94 (223)
Q Consensus 29 ~g~fL~~L~~~~---------~ak~ILEIG-T~~Gys~Stl~--la~A~-~~~-~g~i~TIE~d~e~~~~Ar~~~~~a~G 94 (223)
...++..|.+.. +.+.|.=+| ||.|= +|+. ||... ... +.+|.-++.|..+. .+.+.+..+ +
T Consensus 328 ~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGK--TTtaakLAa~la~~~~gkkVaLIdtDtyRi-gA~EQLk~y-a 403 (559)
T PRK12727 328 RGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGK--TTTIAKLAQRFAAQHAPRDVALVTTDTQRV-GGREQLHSY-G 403 (559)
T ss_pred HHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCH--HHHHHHHHHHHHHhcCCCceEEEecccccc-cHHHHHHHh-h
Confidence 445566665532 346777778 77776 4443 43222 222 23555555565443 344445443 2
Q ss_pred ce--EEEEe----cchHHHhcCCCCccEEEEeCCCc
Q 027409 95 WV--SEVIV----RQAEEVMGELKGVDFLVVDCTSK 124 (223)
Q Consensus 95 ~~--I~li~----GdA~evL~~L~~fDfVFIDa~K~ 124 (223)
-. +.+.. ++..+.|.++..||+||||..-.
T Consensus 404 ~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDTaG~ 439 (559)
T PRK12727 404 RQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGM 439 (559)
T ss_pred cccCceeEecCcHHHHHHHHHHhccCCEEEecCCCc
Confidence 22 33332 23344566667899999998753
No 392
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.58 E-value=22 Score=31.82 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=53.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
-++|.=||+| ..+.+++.+.......-+|+-++++++..+.++ +. |.... ...+..+.+ ...|+|++=.
T Consensus 6 ~~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~-g~~~~-~~~~~~~~~---~~aDvViiav 74 (307)
T PRK07502 6 FDRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARAR----EL-GLGDR-VTTSAAEAV---KGADLVILCV 74 (307)
T ss_pred CcEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hC-CCCce-ecCCHHHHh---cCCCEEEECC
Confidence 3678889975 345555554332211137888999988766554 34 54312 122333333 4689988877
Q ss_pred CCcccHHHHHHhcc-CCCceEEEEe
Q 027409 122 TSKDFARVLRFARF-SNKGAVLAFK 145 (223)
Q Consensus 122 ~K~~Y~~~f~~~~~-l~~GgvIV~D 145 (223)
-......+++.+.+ +++|.+| +|
T Consensus 75 p~~~~~~v~~~l~~~l~~~~iv-~d 98 (307)
T PRK07502 75 PVGASGAVAAEIAPHLKPGAIV-TD 98 (307)
T ss_pred CHHHHHHHHHHHHhhCCCCCEE-Ee
Confidence 55555666765543 4777755 45
No 393
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=79.51 E-value=56 Score=31.28 Aligned_cols=124 Identities=8% Similarity=0.021 Sum_probs=74.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe-
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV- 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~- 101 (223)
.-.|.+.+|=..+++..+++..+=.++|.. +..+++. +...++.+|++.... ........+.+++. |+.+.++.
T Consensus 66 ~~~pt~~~le~~la~l~g~~~~v~fsSG~~--Ai~~al~-~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~-Gi~v~~vd~ 141 (437)
T PRK05613 66 LTNPTVEALENRIASLEGGVHAVAFASGQA--AETAAIL-NLAGAGDHIVTSPRLYGGTETLFLVTLNRL-GIEVTFVEN 141 (437)
T ss_pred ccChHHHHHHHHHHHHhCCCeEEEeCCHHH--HHHHHHH-HhcCCCCEEEECCCccHHHHHHHHHHHHhc-CeEEEEECC
Confidence 567888899899999999987777766542 2322222 334567788876432 22223345667777 98877774
Q ss_pred -cchHHHhcCCC-CccEEEEeCCCcccH--HHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 -RQAEEVMGELK-GVDFLVVDCTSKDFA--RVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 -GdA~evL~~L~-~fDfVFIDa~K~~Y~--~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-|..++-..+. ...+|++...-.... .=++.+ ... +.|.++|+||++..+
T Consensus 142 ~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g 197 (437)
T PRK05613 142 PDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATA 197 (437)
T ss_pred CCCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccc
Confidence 23333333453 578888865332211 122333 333 668999999997554
No 394
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=79.44 E-value=23 Score=33.10 Aligned_cols=122 Identities=16% Similarity=0.059 Sum_probs=69.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCch-HHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDER-SRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~e-~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-+|...+|-..|++..++..++=.++ |. .+|.++. +...++.+|++.+..-. .+.......... |+.+.++.
T Consensus 49 ~~~pt~~~L~~~lA~l~g~~~~i~~~s--g~--~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~-gi~v~~vd 123 (386)
T PRK08045 49 RGNPTRDVVQRALAELEGGAGAVLTNT--GM--SAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG-CYRVLFVD 123 (386)
T ss_pred CCCccHHHHHHHHHHHhCCCeEEEECC--HH--HHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhC-CeEEEEeC
Confidence 456888999999999998877665433 33 3333332 23455667877765332 344444444444 55555554
Q ss_pred cchHHHhc-CC-CCccEEEEeCCCccc-HHH--HHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMG-EL-KGVDFLVVDCTSKDF-ARV--LRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~-~L-~~fDfVFIDa~K~~Y-~~~--f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
..-.+.+. .+ .+-++||+.. ..+- ... ++.+ ... +.|.+||+||.+..+
T Consensus 124 ~~d~e~l~~~l~~~tklV~l~s-P~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 124 QGDEQALRAALAEKPKLVLVES-PSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred CCCHHHHHHhcccCCeEEEEEC-CCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 32233333 34 3578999974 3221 111 2222 222 558999999997654
No 395
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=79.44 E-value=25 Score=33.08 Aligned_cols=124 Identities=11% Similarity=0.076 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEE
Q 027409 23 NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 23 ~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li 100 (223)
+.-.|.+.+|-..|++..++...+=.++ |. .++..+. +...++.+|++.+.. +.........++.. |..+.++
T Consensus 53 r~~~p~~~~le~~lA~l~g~~~~v~~~s--G~--~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~-G~~v~~v 127 (418)
T TIGR01326 53 RLMNPTTDVLEQRIAALEGGVAALAVAS--GQ--AAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRL-GIEVRFV 127 (418)
T ss_pred CCCChhHHHHHHHHHHHhCCCeEEEEcc--HH--HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHc-CcEEEEE
Confidence 3678889999999999999888766555 43 3332222 233456677775532 22334445556677 8885555
Q ss_pred ecchHHHhcC-C-CCccEEEEeC--CCcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 101 VRQAEEVMGE-L-KGVDFLVVDC--TSKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 101 ~GdA~evL~~-L-~~fDfVFIDa--~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
..+-.+.+.+ + +.-++|++.. ++.....-++.+ ... +.|.++|+||++..+
T Consensus 128 ~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~ 184 (418)
T TIGR01326 128 DPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATP 184 (418)
T ss_pred CCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchh
Confidence 4333344443 4 3678999974 221121123333 233 568999999987533
No 396
>PRK07024 short chain dehydrogenase; Provisional
Probab=79.42 E-value=7.8 Score=33.03 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=47.7
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--H--------hcCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--V--------MGELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--v--------L~~L~ 112 (223)
++||=.|.+.| .+..++...+ ..+.+|+.++++++..+...+.+... + .+.++.+|..+ . ..+++
T Consensus 3 ~~vlItGas~g-IG~~la~~l~--~~G~~v~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 3 LKVFITGASSG-IGQALAREYA--RQGATLGLVARRTDALQAFAARLPKA-A-RVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CEEEEEcCCcH-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHhcccC-C-eeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 67888888766 3555554433 34678999999988776655544433 3 46677776642 1 22234
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
..|.++.-+.
T Consensus 78 ~id~lv~~ag 87 (257)
T PRK07024 78 LPDVVIANAG 87 (257)
T ss_pred CCCEEEECCC
Confidence 5899887654
No 397
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.39 E-value=6.5 Score=34.94 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=56.9
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce--EE--EE-ecchHHHh-------
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV--SE--VI-VRQAEEVM------- 108 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~--I~--li-~GdA~evL------- 108 (223)
-++|.=||+| +.+++|+.+.+. .+-.|+-+|++++..+.+++.+++. +++. ++ .+ ..++.+.+
T Consensus 3 i~~I~ViGaG--~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 78 (291)
T PRK06035 3 IKVIGVVGSG--VMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTST 78 (291)
T ss_pred CcEEEEECcc--HHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeC
Confidence 3678888884 566776655443 2458999999999998887765542 0111 00 00 00000111
Q ss_pred --cCCCCccEEEEeCCCccc---HHHHHHhcc-CCCceEEEEeCC
Q 027409 109 --GELKGVDFLVVDCTSKDF---ARVLRFARF-SNKGAVLAFKNA 147 (223)
Q Consensus 109 --~~L~~fDfVFIDa~K~~Y---~~~f~~~~~-l~~GgvIV~DNv 147 (223)
..+...|+||. |-+++. ..+|..+.. ++++.+|+ .|.
T Consensus 79 ~~~~~~~aDlVie-av~e~~~~k~~~~~~l~~~~~~~~il~-S~t 121 (291)
T PRK06035 79 SYESLSDADFIVE-AVPEKLDLKRKVFAELERNVSPETIIA-SNT 121 (291)
T ss_pred CHHHhCCCCEEEE-cCcCcHHHHHHHHHHHHhhCCCCeEEE-EcC
Confidence 11235788776 446664 667766644 47777664 453
No 398
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.37 E-value=13 Score=31.05 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=51.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~---- 110 (223)
.-++||=.|.+. +.++.++... ...+-+|+.+.++++..+.....++.. +..++++.+|..+ .+..
T Consensus 3 ~~~~vlItG~sg-~iG~~la~~l--~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 3 KGKVALVTGAAS-GIGLEIALAL--AKEGAKVVIADLNDEAAAAAAEALQKA-GGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCEEEEECCCc-hHHHHHHHHH--HHCCCeEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 347889888764 4456554443 334678999999998877777667665 6557777777542 1222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+.++|.|+.-|.
T Consensus 79 ~~~~d~vi~~a~ 90 (258)
T PRK12429 79 FGGVDILVNNAG 90 (258)
T ss_pred cCCCCEEEECCC
Confidence 246898887664
No 399
>PRK06138 short chain dehydrogenase; Provisional
Probab=79.32 E-value=12 Score=31.22 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=51.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~ 110 (223)
+-|.+|=.|++.| .++.++-..+ ..+.+|+.+.++++..+...+.+. . +..+.++.+|..+ ++++
T Consensus 4 ~~k~~lItG~sg~-iG~~la~~l~--~~G~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 4 AGRVAIVTGAGSG-IGRATAKLFA--REGARVVVADRDAEAAERVAAAIA-A-GGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHH--HCCCeEEEecCCHHHHHHHHHHHh-c-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4578999999866 3565544333 346789999999887766666555 4 5457778777532 2222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+.++|.|+.-+.
T Consensus 79 ~~~id~vi~~ag 90 (252)
T PRK06138 79 WGRLDVLVNNAG 90 (252)
T ss_pred cCCCCEEEECCC
Confidence 357899988765
No 400
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.30 E-value=6.9 Score=32.97 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=50.6
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--HhcC-CC-CccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMGE-LK-GVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~~-L~-~fDfVF 118 (223)
++||=.|.+.| .++.++... ...+.+|+.+.++++..+..++..+.. +..++++.+|..+ .+.. +. ..|.||
T Consensus 3 ~~vlVtGasg~-iG~~ia~~l--~~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSG-FGREVALRL--ARKGHNVIAGVQIAPQVTALRAEAARR-GLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCH-HHHHHHHHH--HHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 57888898766 355554433 334678999999887766666666665 6557777777643 2222 23 799999
Q ss_pred EeCC
Q 027409 119 VDCT 122 (223)
Q Consensus 119 IDa~ 122 (223)
..|.
T Consensus 79 ~~ag 82 (257)
T PRK09291 79 NNAG 82 (257)
T ss_pred ECCC
Confidence 9775
No 401
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.21 E-value=43 Score=30.61 Aligned_cols=75 Identities=8% Similarity=0.069 Sum_probs=50.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCCCCccEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGELKGVDFLV 118 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L~~fDfVF 118 (223)
..+|.=||+ |..+++++++.+..+-...|+=+|++++..+-...-+..+..+. ..+.. ||..+ +..-|+|+
T Consensus 3 ~~Ki~IiGa--G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~----~~~adivv 76 (312)
T cd05293 3 RNKVTVVGV--GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV----TANSKVVI 76 (312)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH----hCCCCEEE
Confidence 357888996 66788888877666555679999999987665555566651121 35554 66543 34789999
Q ss_pred EeCC
Q 027409 119 VDCT 122 (223)
Q Consensus 119 IDa~ 122 (223)
|-|.
T Consensus 77 itaG 80 (312)
T cd05293 77 VTAG 80 (312)
T ss_pred ECCC
Confidence 9664
No 402
>PRK06197 short chain dehydrogenase; Provisional
Probab=79.20 E-value=15 Score=32.41 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC-ceEEEEecchHH----------Hhc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG-WVSEVIVRQAEE----------VMG 109 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G-~~I~li~GdA~e----------vL~ 109 (223)
.-|.||=.|.+.| +++.++...+ ..+.+|+.+.++++..+.+.+.+....+ ..++++..|..+ +..
T Consensus 15 ~~k~vlItGas~g-IG~~~a~~l~--~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 15 SGRVAVVTGANTG-LGYETAAALA--AKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred CCCEEEEcCCCCc-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 4478999998766 4565554443 3367899999998888777776664312 227777777532 112
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
.++.+|.++.-|.
T Consensus 92 ~~~~iD~li~nAg 104 (306)
T PRK06197 92 AYPRIDLLINNAG 104 (306)
T ss_pred hCCCCCEEEECCc
Confidence 2346899988774
No 403
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.11 E-value=12 Score=34.80 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=55.6
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--HhcCC--CCccEEEE
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMGEL--KGVDFLVV 119 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~~L--~~fDfVFI 119 (223)
+|+=+|+ |..+. .+|......+-.++-+|.|++..+.+++ .. | ++++.||+.+ .|.+. ..+|.|++
T Consensus 2 ~viIiG~--G~ig~--~~a~~L~~~g~~v~vid~~~~~~~~~~~---~~-~--~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGA--GQVGY--TLAENLSGENNDVTVIDTDEERLRRLQD---RL-D--VRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECC--CHHHH--HHHHHHHhCCCcEEEEECCHHHHHHHHh---hc-C--EEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 5777887 56444 4544444446689999999998766554 23 3 5788899853 56554 58999998
Q ss_pred eCCCcccHHHH-HHhccC-CCceEEE
Q 027409 120 DCTSKDFARVL-RFARFS-NKGAVLA 143 (223)
Q Consensus 120 Da~K~~Y~~~f-~~~~~l-~~GgvIV 143 (223)
-......-.+. ..++.+ +...+|+
T Consensus 72 ~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 72 VTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred ecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 76543333333 234444 3444444
No 404
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=78.78 E-value=16 Score=31.00 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=49.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-------------------chHHHHHHHHHHhhcCce--EE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-------------------ERSRLAYVKAMYDVVGWV--SE 98 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-------------------~e~~~~Ar~~~~~a~G~~--I~ 98 (223)
.+-++||=||+| |. ++.++...+... =|+|+-+|.| ..+.+.+++.+++. +-. |+
T Consensus 19 l~~~~VlviG~G-gl-Gs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~ 94 (202)
T TIGR02356 19 LLNSHVLIIGAG-GL-GSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVT 94 (202)
T ss_pred hcCCCEEEECCC-HH-HHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEE
Confidence 466889999998 43 455555444332 2789999988 45677788888876 333 55
Q ss_pred EEecchH-HHhcC-CCCccEEEEeCC
Q 027409 99 VIVRQAE-EVMGE-LKGVDFLVVDCT 122 (223)
Q Consensus 99 li~GdA~-evL~~-L~~fDfVFIDa~ 122 (223)
.+..... +.+.+ +..||+| |||.
T Consensus 95 ~~~~~i~~~~~~~~~~~~D~V-i~~~ 119 (202)
T TIGR02356 95 ALKERVTAENLELLINNVDLV-LDCT 119 (202)
T ss_pred EehhcCCHHHHHHHHhCCCEE-EECC
Confidence 5544432 22333 4689987 5553
No 405
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=78.78 E-value=1.1 Score=43.66 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=70.9
Q ss_pred HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-C-
Q 027409 35 AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-K- 112 (223)
Q Consensus 35 ~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~- 112 (223)
......++..|++.|. |-=.|.+.+ .. +..+++.+|+||++.+.|++||...-..+..+..-|+++.+.++ +
T Consensus 291 ~~~~~~~~~lvvg~gg--G~l~sfl~~---~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~ 364 (482)
T KOG2352|consen 291 QKLDTGGKQLVVGLGG--GGLPSFLHM---SL-PKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKS 364 (482)
T ss_pred hhccccCcEEEEecCC--Cccccceee---ec-CccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhc
Confidence 3334445556666665 432233322 22 45799999999999999999987440123677888999877764 1
Q ss_pred -----CccEEEEeCCCccc-------HHHHH-----Hhc-cCCCceEEEEeCCCC
Q 027409 113 -----GVDFLVVDCTSKDF-------ARVLR-----FAR-FSNKGAVLAFKNAFQ 149 (223)
Q Consensus 113 -----~fDfVFIDa~K~~Y-------~~~f~-----~~~-~l~~GgvIV~DNvl~ 149 (223)
.||++++|-+-.+- +.++. .++ .++|-|+.+.+=+..
T Consensus 365 ~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 365 QQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred cccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 59999999875442 33443 223 358889887766654
No 406
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=78.60 E-value=14 Score=35.58 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=56.2
Q ss_pred CCCeEEEEc-cCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHH----HhhcCceEEEE--ecchHHHh----c
Q 027409 41 NAKLIVEAW-THGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAM----YDVVGWVSEVI--VRQAEEVM----G 109 (223)
Q Consensus 41 ~ak~ILEIG-T~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~----~~a~G~~I~li--~GdA~evL----~ 109 (223)
+|..|+=+| +|.|=++++..||......+-++.-++.|..+. .|.+.+ ++. |+.+... ..|+.+++ .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~-aa~eQL~~la~~~-gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP-AAYDQLKQLAEKI-GVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH-HHHHHHHHHHHHc-CCcEEecCCccCHHHHHHHHHH
Confidence 467788888 455554455566655544444666677666544 233333 334 5542211 23555444 3
Q ss_pred CCCCccEEEEeCCCccc--HHHHHHh----ccC-CCceEEEEeC
Q 027409 110 ELKGVDFLVVDCTSKDF--ARVLRFA----RFS-NKGAVLAFKN 146 (223)
Q Consensus 110 ~L~~fDfVFIDa~K~~Y--~~~f~~~----~~l-~~GgvIV~DN 146 (223)
.+..+|+|+||.+-.++ .+.++.+ ... +..-++|.|-
T Consensus 172 ~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda 215 (437)
T PRK00771 172 KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDA 215 (437)
T ss_pred HhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEec
Confidence 44468999999986555 2344322 223 4455666664
No 407
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=78.56 E-value=20 Score=32.49 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=53.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEec--chHHHhcCC--
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR--QAEEVMGEL-- 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G--dA~evL~~L-- 111 (223)
...-.+||=.|++ +.+..++.+|.+ -+. +|+.++.++++.+.|++ . |.. +..... +..+.+.++
T Consensus 185 ~~~g~~VlV~G~g-~vG~~a~q~ak~---~G~~~vi~~~~~~~~~~~~~~----~-Ga~~~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 185 VKKGSTVAIFGLG-AVGLAVAEGARI---RGASRIIGVDLNPSKFEQAKK----F-GVTEFVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHH----c-CCceEEcccccchhHHHHHHHHhC
Confidence 3445788888863 554444555543 255 79999999998777654 4 654 333321 122344433
Q ss_pred CCccEEEEeCCCcccHHHHH-HhccCCCc-eEEEE
Q 027409 112 KGVDFLVVDCTSKDFARVLR-FARFSNKG-AVLAF 144 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~ 144 (223)
..+|+ ++|+--. ...+. .+..+++| |.++.
T Consensus 256 ~~~d~-vid~~G~--~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 256 GGVDY-SFECTGN--IDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred CCCCE-EEECCCC--hHHHHHHHHHhhcCCCEEEE
Confidence 26895 5677422 22333 44555674 77664
No 408
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=78.55 E-value=13 Score=31.81 Aligned_cols=79 Identities=18% Similarity=0.080 Sum_probs=53.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~ 110 (223)
.-|++|=.|.+.|. +.+++...+ ..+.+|+.++.+++..+.+.+.+++. |..+.++..|..+ +...
T Consensus 9 ~~k~~lItGa~~~i-G~~ia~~l~--~~G~~vv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 9 KGKIALITGASYGI-GFAIAKAYA--KAGATIVFNDINQELVDKGLAAYREL-GIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 34789999998774 455554433 34678999999998888888888776 6556666666531 1222
Q ss_pred CCCccEEEEeCCC
Q 027409 111 LKGVDFLVVDCTS 123 (223)
Q Consensus 111 L~~fDfVFIDa~K 123 (223)
++++|.++.-|.-
T Consensus 85 ~~~id~li~~ag~ 97 (265)
T PRK07097 85 VGVIDILVNNAGI 97 (265)
T ss_pred CCCCCEEEECCCC
Confidence 3468998876643
No 409
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=78.54 E-value=22 Score=30.72 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=53.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~f 114 (223)
..-.+||=.|.+.+.+..++.+|.+. +.+++.+..+++..+.++ +. |.. +.....+-.+.+.++ .++
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~----~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLL---GFKTINVVRRDEQVEELK----AL-GADEVIDSSPEDLAQRVKEATGGAGA 208 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHC---CCeEEEEecChHHHHHHH----hc-CCCEEecccchhHHHHHHHHhcCCCc
Confidence 34467777777544433566666542 567888887777655554 34 654 332222333334333 269
Q ss_pred cEEEEeCCCcccHHHHHHhccCCCceEEE
Q 027409 115 DFLVVDCTSKDFARVLRFARFSNKGAVLA 143 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~~~~~l~~GgvIV 143 (223)
|.|| |+-.... ..+.++.++++|.++
T Consensus 209 d~vl-~~~g~~~--~~~~~~~l~~~g~~v 234 (323)
T cd05282 209 RLAL-DAVGGES--ATRLARSLRPGGTLV 234 (323)
T ss_pred eEEE-ECCCCHH--HHHHHHhhCCCCEEE
Confidence 9776 8765432 334556667777776
No 410
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=78.50 E-value=31 Score=29.90 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=50.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
...-.+||=.|.+.+.+..++.+|.+. +.+++.+..+++..+.++ +. |.. +....-+-.+.+.++ .+
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~---G~~v~~~~~~~~~~~~~~----~~-g~~~~~~~~~~~~~~~i~~~~~~~~ 208 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAAR---GINVINLVRRDAGVAELR----AL-GIGPVVSTEQPGWQDKVREAAGGAP 208 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHC---CCeEEEEecCHHHHHHHH----hc-CCCEEEcCCCchHHHHHHHHhCCCC
Confidence 334466776676544433555666543 567777666666544443 34 554 222222233334443 26
Q ss_pred ccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
+|+|| |+.-... .-+.++.++++|.++.
T Consensus 209 ~d~v~-d~~g~~~--~~~~~~~l~~~g~~v~ 236 (324)
T cd08292 209 ISVAL-DSVGGKL--AGELLSLLGEGGTLVS 236 (324)
T ss_pred CcEEE-ECCCChh--HHHHHHhhcCCcEEEE
Confidence 99987 7754432 2345566666676663
No 411
>PRK12939 short chain dehydrogenase; Provisional
Probab=78.48 E-value=15 Score=30.61 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=50.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hhc--------C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMG--------E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~--------~ 110 (223)
+-++||=.|.+.| .++.++... ...+.+|+.+.++++..+...+.++.. +..++++.+|..+ .+. .
T Consensus 6 ~~~~vlItGa~g~-iG~~la~~l--~~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGAARG-LGAAFAEAL--AEAGATVAFNDGLAAEARELAAALEAA-GGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHH--HHcCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4588998887644 455554433 334678999999988887777777665 5457777777742 221 1
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|.|+.=+.
T Consensus 82 ~~~id~vi~~ag 93 (250)
T PRK12939 82 LGGLDGLVNNAG 93 (250)
T ss_pred cCCCCEEEECCC
Confidence 246888876554
No 412
>PRK05968 hypothetical protein; Provisional
Probab=78.36 E-value=44 Score=31.09 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=75.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+.+|=..+++..+++..+=+++ |- +++.++. +...++.+|++.+.. ...+......+... |+.+.++.
T Consensus 60 ~~~p~~~~le~~lA~l~g~~~av~~~s--G~--~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~-G~~v~~vd 134 (389)
T PRK05968 60 GDNPTVRAFEEMLAKLEGAEDARGFAS--GM--AAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRM-GVEVDYVD 134 (389)
T ss_pred CCChhHHHHHHHHHHHhCCCcEEEECC--HH--HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CceEEEeC
Confidence 447888899999999999887765544 43 3443332 233556678777642 22233444556666 88877776
Q ss_pred cchHHHhcC-CCCccEEEEeCCCccc--HHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-LKGVDFLVVDCTSKDF--ARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L~~fDfVFIDa~K~~Y--~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
++-.+.+.+ +.+.++|++..--... ..-++.+ ... +.|..+|+||.+..+
T Consensus 135 ~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 135 GRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred CCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcch
Confidence 654444443 4567899997533322 2233333 333 568899999987544
No 413
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.27 E-value=16 Score=31.81 Aligned_cols=79 Identities=18% Similarity=0.123 Sum_probs=53.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------Hhc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMG 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~ 109 (223)
..-|++|=.|.+.| .+++++...+ ..+.+|+-++++++..+...+.++.. |..+.++..|..+ +..
T Consensus 4 ~~~k~vlVTGas~g-IG~ala~~La--~~G~~Vv~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 4 FPGRGAVITGGASG-IGLATGTEFA--RRGARVVLGDVDKPGLRQAVNHLRAE-GFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34578998898866 4566555444 34678988999988877777777766 6566677777531 122
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
.+++.|.++.-|.
T Consensus 80 ~~g~id~li~nAg 92 (275)
T PRK05876 80 LLGHVDVVFSNAG 92 (275)
T ss_pred HcCCCCEEEECCC
Confidence 2346899888765
No 414
>PRK06181 short chain dehydrogenase; Provisional
Probab=78.16 E-value=16 Score=30.99 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=48.6
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--H----hc----CCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--V----MG----ELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--v----L~----~L~ 112 (223)
+.||=.|.+.| .++.++... ...+.+|+.++++++..+...+.+... +-.+.++.+|..+ . +. ++.
T Consensus 2 ~~vlVtGasg~-iG~~la~~l--~~~g~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEG-IGRALAVRL--ARAGAQLVLAARNETRLASLAQELADH-GGEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcH-HHHHHHHHH--HHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46788887755 345544333 334679999999988777666666665 5456777777532 1 11 234
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
+.|.|+.-+.
T Consensus 78 ~id~vi~~ag 87 (263)
T PRK06181 78 GIDILVNNAG 87 (263)
T ss_pred CCCEEEECCC
Confidence 6898887764
No 415
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=78.11 E-value=11 Score=35.78 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=46.2
Q ss_pred CCcHHHHHHHH---------HHHHhcC--CCeEEEEccCcchHHHHHHHHHhcCC----CCcEEEEEeCCchHHHHHHHH
Q 027409 24 IKESGVAELLS---------AMAAGWN--AKLIVEAWTHGGPITTSIGLAIAARH----TCARHVCIVPDERSRLAYVKA 88 (223)
Q Consensus 24 ii~p~~g~fL~---------~L~~~~~--ak~ILEIGT~~Gys~Stl~la~A~~~----~~g~i~TIE~d~e~~~~Ar~~ 88 (223)
+-.|+++++.- .+-+... |-.+||||.|.|+=.+-|.-..-... ...++.-||.+++..+.-|++
T Consensus 49 iTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 49 ITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 55676655443 3333444 35799999999985444322111112 247899999999999999999
Q ss_pred HHhh
Q 027409 89 MYDV 92 (223)
Q Consensus 89 ~~~a 92 (223)
++..
T Consensus 129 L~~~ 132 (370)
T COG1565 129 LKAT 132 (370)
T ss_pred Hhcc
Confidence 9987
No 416
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.10 E-value=41 Score=30.64 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=48.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe-cchHHHhcCC-CCccEEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV-RQAEEVMGEL-KGVDFLVV 119 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~-GdA~evL~~L-~~fDfVFI 119 (223)
-++||=.|++ |.+..++.+|.+ .+.+++.++.++++...+ .++. |.. .++. .+. +.+.++ +.+|+||
T Consensus 184 g~~VlV~G~G-~vG~~avq~Ak~---~Ga~vi~~~~~~~~~~~~---~~~~-Ga~-~vi~~~~~-~~~~~~~~~~D~vi- 252 (360)
T PLN02586 184 GKHLGVAGLG-GLGHVAVKIGKA---FGLKVTVISSSSNKEDEA---INRL-GAD-SFLVSTDP-EKMKAAIGTMDYII- 252 (360)
T ss_pred CCEEEEECCC-HHHHHHHHHHHH---CCCEEEEEeCCcchhhhH---HHhC-CCc-EEEcCCCH-HHHHhhcCCCCEEE-
Confidence 4577777764 554455556554 256788777776643322 1234 654 2221 122 223332 4689887
Q ss_pred eCCCcccHHHHH-HhccCCCceEEEE
Q 027409 120 DCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|+.- -...++ .++.+++||.++.
T Consensus 253 d~~g--~~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 253 DTVS--AVHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred ECCC--CHHHHHHHHHHhcCCcEEEE
Confidence 7753 223443 5567788887774
No 417
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=78.06 E-value=26 Score=26.14 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=50.5
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEE-EeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVC-IVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~T-IE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~ 122 (223)
||.=||+|. .+...+.+.....++.+++. +|+++++.+.+ -++. |.. ...|..+.+..- .+|+|+|-..
T Consensus 2 ~v~iiG~G~--~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~~-~~~---~~~~~~~ll~~~-~~D~V~I~tp 71 (120)
T PF01408_consen 2 RVGIIGAGS--IGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEKY-GIP---VYTDLEELLADE-DVDAVIIATP 71 (120)
T ss_dssp EEEEESTSH--HHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHHT-TSE---EESSHHHHHHHT-TESEEEEESS
T ss_pred EEEEECCcH--HHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHHh-ccc---chhHHHHHHHhh-cCCEEEEecC
Confidence 567788853 33443434333445667664 68877765544 3444 665 667777777642 6999999998
Q ss_pred CcccHHHHHHh
Q 027409 123 SKDFARVLRFA 133 (223)
Q Consensus 123 K~~Y~~~f~~~ 133 (223)
.....++...+
T Consensus 72 ~~~h~~~~~~~ 82 (120)
T PF01408_consen 72 PSSHAEIAKKA 82 (120)
T ss_dssp GGGHHHHHHHH
T ss_pred CcchHHHHHHH
Confidence 76666666533
No 418
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=77.87 E-value=14 Score=30.92 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=50.9
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hhc--------CCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMG--------ELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~--------~L~ 112 (223)
++||=.|.+.| .++.++...+ ..+-+|+.++++++..+...+.++.. +..++++.+|..+ .+. .+.
T Consensus 4 ~~ilItGas~~-iG~~la~~l~--~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 4 KTAIVTGGGGG-IGGATCRRFA--EEGAKVAVFDLNREAAEKVAADIRAK-GGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CEEEEeCCCCh-HHHHHHHHHH--HCCCEEEEecCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 67888887655 4566554433 34568999999988877777777766 5557788888642 222 224
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
+.|.++.-+.
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 6898887774
No 419
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=77.86 E-value=20 Score=30.28 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=53.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------Hhc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMG 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~ 109 (223)
...|.+|=.|.+.|. +.+++...+ ..+.+|+-++++++..+...+.++.. +..+.++..|..+ +..
T Consensus 7 l~~k~~lItGas~gi-G~~ia~~L~--~~G~~vvl~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 7 LAGKNILITGSAQGI-GFLLATGLA--EYGAEIIINDITAERAELAVAKLRQE-GIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CCCCEEEEECCCChH-HHHHHHHHH--HcCCEEEEEcCCHHHHHHHHHHHHhc-CCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 356889999988774 455554443 34678999999988877777777776 6556666666431 122
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
.++++|.++.-+.
T Consensus 83 ~~~~id~vi~~ag 95 (254)
T PRK08085 83 DIGPIDVLINNAG 95 (254)
T ss_pred hcCCCCEEEECCC
Confidence 2346898888764
No 420
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=77.82 E-value=5.4 Score=33.80 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=14.2
Q ss_pred CCccEEEEeCCCcccHHHHH
Q 027409 112 KGVDFLVVDCTSKDFARVLR 131 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~ 131 (223)
+.||+|+||+....-.....
T Consensus 107 ~~yD~VIiD~p~~~~~~~~~ 126 (251)
T TIGR01969 107 DDTDFLLIDAPAGLERDAVT 126 (251)
T ss_pred hhCCEEEEeCCCccCHHHHH
Confidence 37999999998765443333
No 421
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.76 E-value=13 Score=31.26 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----CC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----EL 111 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~L 111 (223)
-+++|=.|.+.| .++.++...+ ..+.+|+.+.++++..+.+.+.++.. |-.+.++.+|..+ .+. ..
T Consensus 7 ~~~vlItGasg~-iG~~la~~l~--~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASG-IGKEIALELA--RAGAAVAIADLNQDGANAVADEINKA-GGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCCh-HHHHHHHHHH--HCCCeEEEEeCChHHHHHHHHHHHhc-CceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478898887644 5566555443 44678999999998888888878776 6667777887532 111 22
Q ss_pred CCccEEEEeC
Q 027409 112 KGVDFLVVDC 121 (223)
Q Consensus 112 ~~fDfVFIDa 121 (223)
++.|.|+--+
T Consensus 83 ~~~d~vi~~a 92 (262)
T PRK13394 83 GSVDILVSNA 92 (262)
T ss_pred CCCCEEEECC
Confidence 4588776644
No 422
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=77.72 E-value=25 Score=33.02 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCch-HHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDER-SRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~e-~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-+|.+..|-..|++..++..|+=..++. .++.++. +...++.+|++.+..=. .+........+. |+.+.++.
T Consensus 50 ~~npt~~~Le~~lA~leg~e~ivvt~gg~----~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~-gi~v~~vd 124 (388)
T PRK08861 50 SGNPNRGLLEQTLSELESGKGAVVTNCGT----SALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKG-DFKVQFVD 124 (388)
T ss_pred CCCchHHHHHHHHHHHhCCCeEEEECCHH----HHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcC-CeEEEEEC
Confidence 45788999999999999999988654433 3333222 23455667776543221 233333444455 66655554
Q ss_pred cchHHHhc-CC-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMG-EL-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~-~L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
..-.+.+. .+ +.-++||+..- .....-=++.+ ... +.|.++|+||.+..+
T Consensus 125 ~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 125 QSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred CCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 32233333 34 36799999742 21121112222 222 568999999997654
No 423
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=77.54 E-value=38 Score=31.58 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=72.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.=+|.+..|=..|++..++..++=.. .|. +++.++. +...++.+|++.+..- .....+....+.. |+.++++.
T Consensus 47 ~gnPt~~~lE~~lA~l~g~~~~~~~~--sG~--~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~-gi~v~~~d 121 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEGGAGCYLYP--SGL--AAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRM-GVDITYYD 121 (377)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEEC--cHH--HHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhc-CcEEEEEC
Confidence 34577778888888888888888543 455 4443332 3345566777655332 2333344456666 88755543
Q ss_pred cchHHHhcC-C-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+-.+.+.+ + ++..+|++..- ......-++.+ ... +.|..+|+||++..+
T Consensus 122 ~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g 177 (377)
T TIGR01324 122 PLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAG 177 (377)
T ss_pred CCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 211144443 3 36889998853 33334444433 333 668999999998655
No 424
>PLN02494 adenosylhomocysteinase
Probab=77.38 E-value=25 Score=34.48 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCC----CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH
Q 027409 31 ELLSAMAAGWNA----KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE 106 (223)
Q Consensus 31 ~fL~~L~~~~~a----k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e 106 (223)
.++..+.+..+. ++|+=+|+| ..+..++.. +..-+.+|+-+|+|+.+...|+. . |..+ . +..+
T Consensus 239 S~~d~i~r~t~i~LaGKtVvViGyG--~IGr~vA~~--aka~Ga~VIV~e~dp~r~~eA~~----~-G~~v--v--~leE 305 (477)
T PLN02494 239 SLPDGLMRATDVMIAGKVAVICGYG--DVGKGCAAA--MKAAGARVIVTEIDPICALQALM----E-GYQV--L--TLED 305 (477)
T ss_pred cHHHHHHHhcCCccCCCEEEEECCC--HHHHHHHHH--HHHCCCEEEEEeCCchhhHHHHh----c-CCee--c--cHHH
Confidence 356677777655 999999986 355665544 33447899999999987555532 2 4441 1 2233
Q ss_pred HhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 107 VMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
.+ ...|+||.-....+-. --+.+..+++||+|+-
T Consensus 306 al---~~ADVVI~tTGt~~vI-~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 306 VV---SEADIFVTTTGNKDII-MVDHMRKMKNNAIVCN 339 (477)
T ss_pred HH---hhCCEEEECCCCccch-HHHHHhcCCCCCEEEE
Confidence 33 3589888733221111 1235667789998874
No 425
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=77.23 E-value=40 Score=27.86 Aligned_cols=105 Identities=13% Similarity=0.032 Sum_probs=57.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec-chHHHhcCCCCccEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR-QAEEVMGELKGVDFLV 118 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G-dA~evL~~L~~fDfVF 118 (223)
.+-++++=+|...| .+..++...+ ..+.+|+-+.+++++.+...+.+....+..+..... +..+....+...|+||
T Consensus 26 l~~~~vlVlGgtG~-iG~~~a~~l~--~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 26 LKGKTAVVLGGTGP-VGQRAAVLLA--REGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHH--HCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 35588999986434 3344333322 335688888999887776666665321444333222 2222222345799988
Q ss_pred EeCCCcccHHHHHHhc-cCCCceEEEEeCCCCC
Q 027409 119 VDCTSKDFARVLRFAR-FSNKGAVLAFKNAFQR 150 (223)
Q Consensus 119 IDa~K~~Y~~~f~~~~-~l~~GgvIV~DNvl~~ 150 (223)
.=..-+.|. ..... ..++ +.+++|=...+
T Consensus 103 ~at~~g~~~--~~~~~~~~~~-~~vv~D~~~~~ 132 (194)
T cd01078 103 AAGAAGVEL--LEKLAWAPKP-LAVAADVNAVP 132 (194)
T ss_pred ECCCCCcee--chhhhcccCc-eeEEEEccCCC
Confidence 877666661 11122 2233 77888855443
No 426
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.11 E-value=41 Score=29.79 Aligned_cols=96 Identities=9% Similarity=0.006 Sum_probs=55.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc-------Cc----------e-EEEEecc
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV-------GW----------V-SEVIVRQ 103 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~-------G~----------~-I~li~Gd 103 (223)
-++|.=||+| +.+++++.+.+. .+-.|+-+|++++..+.+++.+++.. .+ . |+ ...|
T Consensus 3 ~~kIaViGaG--~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d 77 (287)
T PRK08293 3 IKNVTVAGAG--VLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTD 77 (287)
T ss_pred ccEEEEECCC--HHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCC
Confidence 3678888884 556776665443 24579999999999888887653220 01 0 11 1223
Q ss_pred hHHHhcCCCCccEEEEeCCCcc---cHHHHHHhcc-CCCceEEEEeCC
Q 027409 104 AEEVMGELKGVDFLVVDCTSKD---FARVLRFARF-SNKGAVLAFKNA 147 (223)
Q Consensus 104 A~evL~~L~~fDfVFIDa~K~~---Y~~~f~~~~~-l~~GgvIV~DNv 147 (223)
..+.+ ..-|+|+.=. .++ -..+|+.+.. ++++.+ +++|-
T Consensus 78 ~~~a~---~~aDlVieav-pe~~~~k~~~~~~l~~~~~~~~i-i~snt 120 (287)
T PRK08293 78 LAEAV---KDADLVIEAV-PEDPEIKGDFYEELAKVAPEKTI-FATNS 120 (287)
T ss_pred HHHHh---cCCCEEEEec-cCCHHHHHHHHHHHHhhCCCCCE-EEECc
Confidence 22222 3578887754 444 3566666644 466654 45553
No 427
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.99 E-value=12 Score=35.55 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=46.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch-HHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER-SRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e-~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
...++|+=||.| . +++.+|.+....+..|+-+|.+++ ......+.+++. |+ ++..|+..+ ....+|+|+
T Consensus 14 ~~~~~v~viG~G--~--~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~-gv--~~~~~~~~~---~~~~~D~Vv 83 (480)
T PRK01438 14 WQGLRVVVAGLG--V--SGFAAADALLELGARVTVVDDGDDERHRALAAILEAL-GA--TVRLGPGPT---LPEDTDLVV 83 (480)
T ss_pred cCCCEEEEECCC--H--HHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc-CC--EEEECCCcc---ccCCCCEEE
Confidence 356799999974 4 555555555555678888886543 333334556666 65 566676544 123689998
Q ss_pred EeCC
Q 027409 119 VDCT 122 (223)
Q Consensus 119 IDa~ 122 (223)
+-..
T Consensus 84 ~s~G 87 (480)
T PRK01438 84 TSPG 87 (480)
T ss_pred ECCC
Confidence 8754
No 428
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=76.89 E-value=14 Score=31.51 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=48.9
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH------HHh----cCCCC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE------EVM----GELKG 113 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~------evL----~~L~~ 113 (223)
++|=.|.+.|. +.+++...+ ..+.+|+.++++++..+.+.+.+++. + .+.++..|.. +.+ .++++
T Consensus 2 ~vlItGas~gI-G~aia~~l~--~~G~~V~~~~r~~~~~~~~~~~l~~~-~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 2 NVLVTASSRGI-GFNVARELL--KKGARVVISSRNEENLEKALKELKEY-G-EVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred eEEEEcCCcHH-HHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHHHHhc-C-CceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 57888888773 566555443 34678999999998888777777665 4 3566666642 122 23357
Q ss_pred ccEEEEeCC
Q 027409 114 VDFLVVDCT 122 (223)
Q Consensus 114 fDfVFIDa~ 122 (223)
+|.++.-|.
T Consensus 77 id~li~naG 85 (259)
T PRK08340 77 IDALVWNAG 85 (259)
T ss_pred CCEEEECCC
Confidence 898877654
No 429
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=76.89 E-value=31 Score=32.69 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=70.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+..|-..+++..+.+..+=+++ |.++..+++. +...++.+|++.... ..........+.+. |..+.++..
T Consensus 60 ~~~p~~~~le~~lA~l~g~~~al~~~S--G~~Ai~~al~-all~pGd~VIv~~~~y~~t~~~~~~~~~~~-G~~v~~vd~ 135 (427)
T PRK05994 60 ITNPTNAVLEERVAALEGGTAALAVAS--GHAAQFLVFH-TLLQPGDEFIAARKLYGGSINQFGHAFKSF-GWQVRWADA 135 (427)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEEcC--HHHHHHHHHH-HHhCCCCEEEEecCcchhHHHHHHHHHHhc-CcEEEEECC
Confidence 446778889999999999988765544 5422333332 234456677765532 22222333445666 887666654
Q ss_pred chHHHhcC-CC-CccEEEEeCCC--cccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGE-LK-GVDFLVVDCTS--KDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~-L~-~fDfVFIDa~K--~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+.+ +. .-.+|++..-- ....--++.+ ... +.|.++|+||++..+
T Consensus 136 ~d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~ 190 (427)
T PRK05994 136 DDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASP 190 (427)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 43343443 43 57899996421 1111112333 333 568999999997643
No 430
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=76.87 E-value=25 Score=32.98 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=71.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCch-HHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDER-SRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~e-~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+.+|=..|++..+++..+=+++| . .++.++. +...++.+|++.+..-. .....+..+... |..+.++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~~~~i~~ssG--~--~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~-Gi~v~~vd 135 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEGAEAATAFSTG--M--AAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRM-GVDVTLCE 135 (398)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEeCCh--H--HHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhC-CeEEEEcC
Confidence 5688899999999999999988666554 4 3443332 33345667776554322 122333445566 87755554
Q ss_pred cchHHHhcC-CC-CccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-LK-GVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L~-~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
..-.+.+.+ +. .-++||+..- .....--++.+ ... +.|.++|+||.+...
T Consensus 136 ~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~ 191 (398)
T PRK08249 136 TGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATP 191 (398)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCcc
Confidence 433344443 43 5789998642 22221113323 333 678999999997543
No 431
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=76.86 E-value=28 Score=31.92 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=72.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+.+|-..|++..+....+=.++ |+ +++.++. +...++.+|++.... .......+...... |..+.++.
T Consensus 37 ~~~p~~~~le~~la~l~g~~~a~~~~s--G~--~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~-g~~~~~v~ 111 (369)
T cd00614 37 IGNPTVDALEKKLAALEGGEAALAFSS--GM--AAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKL-GIEVTFVD 111 (369)
T ss_pred CCChhHHHHHHHHHHHHCCCCEEEEcC--HH--HHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhc-CeEEEEeC
Confidence 457888889999999888877766654 55 4443333 223456677665532 22233334445566 88777666
Q ss_pred cchHHHhcC-CC-CccEEEEeCCCccc--HHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-LK-GVDFLVVDCTSKDF--ARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L~-~fDfVFIDa~K~~Y--~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+-.+.+.+ +. +..+||++.--... ..-++.+ ... +.|.++|+||.+..+
T Consensus 112 ~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~ 167 (369)
T cd00614 112 PDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATP 167 (369)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcch
Confidence 654454443 43 67899997532111 1113333 333 668999999997544
No 432
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=76.70 E-value=32 Score=29.94 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=52.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDf 116 (223)
.-.+||=.|.+.+.+..++.+|.+ .+.+++.+..++++.+.+++. . |.. +.....+..+.+.++ ..+|.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~---~G~~vi~~~~~~~~~~~~~~~---~-g~~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKL---LGARVVGIAGSDEKCRWLVEE---L-GFDAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHhh---c-CCceEEecCChhHHHHHHHhccCCceE
Confidence 446888888554443355556544 367899999888876655443 3 543 333332333333333 36997
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEE
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLA 143 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV 143 (223)
+| |+.-. ..+. .++.++++|.++
T Consensus 218 vi-~~~g~---~~~~~~~~~l~~~G~~v 241 (329)
T cd05288 218 YF-DNVGG---EILDAALTLLNKGGRIA 241 (329)
T ss_pred EE-EcchH---HHHHHHHHhcCCCceEE
Confidence 76 77543 2333 456667777666
No 433
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=76.64 E-value=36 Score=31.16 Aligned_cols=100 Identities=15% Similarity=0.046 Sum_probs=58.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-HHhh---cCceEEEEe-cchHHHhcCCCC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-MYDV---VGWVSEVIV-RQAEEVMGELKG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-~~~a---~G~~I~li~-GdA~evL~~L~~ 113 (223)
+++.++|.-||+| ..+++++...+...- ..|+=+|++++..+ ++.. +..+ .+...++.. +|- +. +..
T Consensus 3 ~~~~~KI~IIGaG--~vG~~ia~~la~~gl-~~i~LvDi~~~~~~-~~~ld~~~~~~~~~~~~~I~~~~d~-~~---l~~ 74 (321)
T PTZ00082 3 MIKRRKISLIGSG--NIGGVMAYLIVLKNL-GDVVLFDIVKNIPQ-GKALDISHSNVIAGSNSKVIGTNNY-ED---IAG 74 (321)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHhCCC-CeEEEEeCCCchhh-HHHHHHHhhhhccCCCeEEEECCCH-HH---hCC
Confidence 3456899999965 346777776554332 35999999999642 2211 1111 122256664 664 33 457
Q ss_pred ccEEEEeCCCcc---------------------cHHHHHHhccC-CCceEEEEeC
Q 027409 114 VDFLVVDCTSKD---------------------FARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 114 fDfVFIDa~K~~---------------------Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
-|+|++-+.... +.++++.+... +++=+|++-|
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 899999663211 34444444444 5556888888
No 434
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=76.56 E-value=18 Score=32.65 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=42.1
Q ss_pred CCCeEEEEc-cCcchHHHHHH--HHHhcCCCCcEEEEEeCCchHHHHH---HHHHHhhcCceEEEEecch---HHHhcCC
Q 027409 41 NAKLIVEAW-THGGPITTSIG--LAIAARHTCARHVCIVPDERSRLAY---VKAMYDVVGWVSEVIVRQA---EEVMGEL 111 (223)
Q Consensus 41 ~ak~ILEIG-T~~Gys~Stl~--la~A~~~~~g~i~TIE~d~e~~~~A---r~~~~~a~G~~I~li~GdA---~evL~~L 111 (223)
++..|+=+| ++.|= |++. ++......+.++--|..|+.++... +.+.+.. |+.+... .+. .+.|..+
T Consensus 74 ~~~~i~~~G~~g~GK--Ttl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~-~~~~~~~-~~~~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGK--TTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI-GFEVIAV-RDEAAMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcH--HHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhc-CceEEec-CCHHHHHHHHHHH
Confidence 346888888 66676 4433 3322222234555555555543322 3333344 5542221 222 2233333
Q ss_pred ---CCccEEEEeCCCccc
Q 027409 112 ---KGVDFLVVDCTSKDF 126 (223)
Q Consensus 112 ---~~fDfVFIDa~K~~Y 126 (223)
..||+|+||..-..+
T Consensus 150 ~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 150 KEEARVDYILIDTAGKNY 167 (270)
T ss_pred HhcCCCCEEEEECCCCCc
Confidence 379999999986665
No 435
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.50 E-value=13 Score=34.90 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=68.4
Q ss_pred CCcHHHHHHHHHHHHhcCC---------CeEEEEccC-cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc
Q 027409 24 IKESGVAELLSAMAAGWNA---------KLIVEAWTH-GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV 93 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~a---------k~ILEIGT~-~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~ 93 (223)
-|+-|.|.|+.=|.-...| .++|-+|.+ +|. .++..|.|.-. .+|+-+|.++.+++.||+ .
T Consensus 143 ~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl--~t~l~Aka~GA--~~VVi~d~~~~Rle~Ak~----~- 213 (354)
T KOG0024|consen 143 NVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGL--LTGLVAKAMGA--SDVVITDLVANRLELAKK----F- 213 (354)
T ss_pred CCchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHH--HHHHHHHHcCC--CcEEEeecCHHHHHHHHH----h-
Confidence 5677788888777655554 467777775 343 45555555422 579999999999999998 3
Q ss_pred Cce-EEEEecch-----HHHhcCC-C--CccEEEEeCCCcccHHHHHH-hccCCCceEEE
Q 027409 94 GWV-SEVIVRQA-----EEVMGEL-K--GVDFLVVDCTSKDFARVLRF-ARFSNKGAVLA 143 (223)
Q Consensus 94 G~~-I~li~GdA-----~evL~~L-~--~fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV 143 (223)
|.. +....... .+.+.+. + .+|+.| ||. .-...+++ +..+++||.++
T Consensus 214 Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~-dCs--G~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 214 GATVTDPSSHKSSPQELAELVEKALGKKQPDVTF-DCS--GAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred CCeEEeeccccccHHHHHHHHHhhccccCCCeEE-Ecc--CchHHHHHHHHHhccCCEEE
Confidence 666 44444322 2334433 2 499887 553 44556664 45667888744
No 436
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=76.42 E-value=9.3 Score=36.83 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=54.6
Q ss_pred CCeEEEEc-cCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEE-EE-ecchHH----HhcCC
Q 027409 42 AKLIVEAW-THGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSE-VI-VRQAEE----VMGEL 111 (223)
Q Consensus 42 ak~ILEIG-T~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~-li-~GdA~e----vL~~L 111 (223)
|..|+=+| +|.|=++++..||......+-+|.-+..|+.+. .|.+.++.. .++.+. .. ..|+.+ .+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 56678888 666664444456544443344666666666654 444444332 144422 11 235433 33333
Q ss_pred --CCccEEEEeCCCcccH--HHHHHh----ccCCC-ceEEEEeC
Q 027409 112 --KGVDFLVVDCTSKDFA--RVLRFA----RFSNK-GAVLAFKN 146 (223)
Q Consensus 112 --~~fDfVFIDa~K~~Y~--~~f~~~----~~l~~-GgvIV~DN 146 (223)
..||+||||..-.... +.++.+ ....| --++|.|-
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda 222 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDG 222 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecc
Confidence 3799999998754432 344432 22333 35666663
No 437
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.19 E-value=16 Score=31.49 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=48.8
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc------------------hHHHHHHHHHHhhcCce--E
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE------------------RSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~------------------e~~~~Ar~~~~~a~G~~--I 97 (223)
+..+..+|+=||+| |. +|.++...+... =|+|+=+|.|. .+.+.|++.+++. +-. |
T Consensus 24 ~~L~~~~V~ViG~G-gl-Gs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v 99 (212)
T PRK08644 24 EKLKKAKVGIAGAG-GL-GSNIAVALARSG-VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEI 99 (212)
T ss_pred HHHhCCCEEEECcC-HH-HHHHHHHHHHcC-CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEE
Confidence 34467789999997 43 466665555433 27899998882 4677788888876 443 5
Q ss_pred EEEecchHH-HhcC-CCCccEEEEeC
Q 027409 98 EVIVRQAEE-VMGE-LKGVDFLVVDC 121 (223)
Q Consensus 98 ~li~GdA~e-vL~~-L~~fDfVFIDa 121 (223)
+.+.....+ .+.+ ++.||+|+ ||
T Consensus 100 ~~~~~~i~~~~~~~~~~~~DvVI-~a 124 (212)
T PRK08644 100 EAHNEKIDEDNIEELFKDCDIVV-EA 124 (212)
T ss_pred EEEeeecCHHHHHHHHcCCCEEE-EC
Confidence 555443322 2222 35799765 55
No 438
>PRK10037 cell division protein; Provisional
Probab=76.12 E-value=8.4 Score=33.37 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=17.7
Q ss_pred chHHHHHHHHHhcCCCCcEEEEEeCCchH
Q 027409 53 GPITTSIGLAIAARHTCARHVCIVPDERS 81 (223)
Q Consensus 53 Gys~Stl~la~A~~~~~g~i~TIE~d~e~ 81 (223)
|=+.++.-||.+....|-+|.=||.|++.
T Consensus 14 GKTT~a~nLA~~La~~G~rVLlID~D~q~ 42 (250)
T PRK10037 14 GTTSITAALAWSLQMLGENVLVIDACPDN 42 (250)
T ss_pred cHHHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence 33344445554444444579999999974
No 439
>PRK07050 cystathionine beta-lyase; Provisional
Probab=76.00 E-value=49 Score=30.93 Aligned_cols=123 Identities=9% Similarity=-0.022 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-+|.+.+|-..+++..+++.++=..++. .++.++. +...+|.+|++.+.. ......+....... |.++.++.
T Consensus 62 ~~~pt~~~Le~~lA~l~g~~~~l~~~sgt----~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~-Gi~v~~vd 136 (394)
T PRK07050 62 HATPTSLALAQRLAEIEGGRHALLQPSGL----AAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDF-GITVRFYD 136 (394)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEeccHH----HHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhc-CeEEEEEC
Confidence 55788999999999999999887654433 3332222 223556777776643 33333344555666 88866653
Q ss_pred cchHHHhcC-C-CCccEEEEeC--CCcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDC--TSKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa--~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+-.+.+.+ + +.-.+|++.. +......-++.+ ... +.|.+||.||.+..+
T Consensus 137 ~~~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 137 PLIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccc
Confidence 321232333 3 3568898864 333344445444 333 578899999997544
No 440
>PRK07340 ornithine cyclodeaminase; Validated
Probab=75.95 E-value=39 Score=30.60 Aligned_cols=112 Identities=20% Similarity=0.084 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
+..++.+-.-++.-.++++|+=|||| ..+.+...+.....+--+|.-..+++++.+.-.+.++.. +..+. ..+..
T Consensus 109 TaA~sala~~~La~~~~~~v~IiGaG--~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-~~~~~--~~~~~ 183 (304)
T PRK07340 109 TAAVSLLAARTLAPAPPGDLLLIGTG--VQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-GPTAE--PLDGE 183 (304)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCc--HHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-CCeeE--ECCHH
Confidence 33444444455555789999999996 234444444332222247888999999888777777665 55433 45666
Q ss_pred HHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeCCCC
Q 027409 106 EVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNvl~ 149 (223)
+.+. ..|+|+.=..-.. .+|+. -++||..|.+=-...
T Consensus 184 ~av~---~aDiVitaT~s~~--Pl~~~--~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 184 AIPE---AVDLVVTATTSRT--PVYPE--AARAGRLVVAVGAFT 220 (304)
T ss_pred HHhh---cCCEEEEccCCCC--ceeCc--cCCCCCEEEecCCCC
Confidence 6654 7899887654333 34443 247888776644443
No 441
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.85 E-value=28 Score=31.03 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=56.0
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---K 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~ 112 (223)
...-++||-.|++ +.+..++.+|.+. +. ++++++.++++.+.+++ . |.. +.....+..+.+.++ .
T Consensus 164 ~~~g~~vlI~g~g-~iG~~~~~lak~~---G~~~v~~~~~~~~~~~~~~~----~-g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIG-PVGLMAVAGARLR---GAGRIIAVGSRPNRVELAKE----Y-GATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHH----c-CCceEecCCCCCHHHHHHHHhCCC
Confidence 3345788888864 4433455555432 44 69999999888777764 4 654 333333433333332 2
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCC
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
.+|.+| |+--. ...+. .++.++++|.+|.=.+.
T Consensus 235 ~~d~vl-d~~g~--~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 235 GVDAVI-IAGGG--QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred CCcEEE-ECCCC--HHHHHHHHHHhhcCCEEEEeccc
Confidence 699665 55432 13444 44566778887754443
No 442
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=75.79 E-value=16 Score=30.29 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=43.9
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc------------------hHHHHHHHHHHhhcCce--EEEEecc
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE------------------RSRLAYVKAMYDVVGWV--SEVIVRQ 103 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~------------------e~~~~Ar~~~~~a~G~~--I~li~Gd 103 (223)
+|+=||+| |. +|.++...+... =|+|+=+|.|. .+.+.+++.+++. +-. |+.+...
T Consensus 1 ~VlViG~G-gl-Gs~ia~~La~~G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAG-GL-GSNIAVLLARSG-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIK 76 (174)
T ss_pred CEEEECcC-HH-HHHHHHHHHHcC-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEee
Confidence 57889987 32 455555444332 26788888886 5667778888776 433 5555444
Q ss_pred hHH-HhcC-CCCccEEEEeC
Q 027409 104 AEE-VMGE-LKGVDFLVVDC 121 (223)
Q Consensus 104 A~e-vL~~-L~~fDfVFIDa 121 (223)
..+ .+.+ ++.||+|+ ||
T Consensus 77 ~~~~~~~~~l~~~DlVi-~~ 95 (174)
T cd01487 77 IDENNLEGLFGDCDIVV-EA 95 (174)
T ss_pred cChhhHHHHhcCCCEEE-EC
Confidence 322 2233 35799665 55
No 443
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=75.78 E-value=26 Score=29.68 Aligned_cols=97 Identities=22% Similarity=0.154 Sum_probs=53.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
...-++||=.|.+.+.+..++.++.+ .+.+++.+..+++..+.+++ . |.. +.....+..+.+.++ .+
T Consensus 137 ~~~~~~vlv~g~~~~ig~~~~~~~~~---~g~~v~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~ 208 (323)
T cd05276 137 LKAGETVLIHGGASGVGTAAIQLAKA---LGARVIATAGSEEKLEACRA----L-GADVAINYRTEDFAEEVKEATGGRG 208 (323)
T ss_pred CCCCCEEEEEcCcChHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHH----c-CCCEEEeCCchhHHHHHHHHhCCCC
Confidence 34556888888654433244444433 36788888888776665533 3 543 232222333434333 36
Q ss_pred ccEEEEeCCCcccHHHHHHhccCCCceEEEEeC
Q 027409 114 VDFLVVDCTSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
+|++| |+....+ .-..+..++++|.++.=+
T Consensus 209 ~d~vi-~~~g~~~--~~~~~~~~~~~g~~i~~~ 238 (323)
T cd05276 209 VDVIL-DMVGGDY--LARNLRALAPDGRLVLIG 238 (323)
T ss_pred eEEEE-ECCchHH--HHHHHHhhccCCEEEEEe
Confidence 99876 7765443 223445566677766433
No 444
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.70 E-value=22 Score=30.48 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=52.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~ 110 (223)
+.|.+|=.|.+.| .+++++...+ ..+.+|+.++++++..+...+.++.. |..+.++.+|..+ .+. .
T Consensus 9 ~~k~vlVtGas~g-iG~~ia~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 9 KGKVAVITGGGGV-LGGAMAKELA--RAGAKVAILDRNQEKAEAVVAEIKAA-GGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4588998998866 4566655544 34678999999988777777777666 6556777777532 112 2
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.++.-|.
T Consensus 85 ~g~id~li~~ag 96 (278)
T PRK08277 85 FGPCDILINGAG 96 (278)
T ss_pred cCCCCEEEECCC
Confidence 346898886554
No 445
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=75.68 E-value=45 Score=31.91 Aligned_cols=124 Identities=8% Similarity=0.009 Sum_probs=72.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC-CchHHHHHHHHHHhhcCceEEEEe-
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP-DERSRLAYVKAMYDVVGWVSEVIV- 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~-d~e~~~~Ar~~~~~a~G~~I~li~- 101 (223)
...|.+.+|=..|++..+++..+=.++ |.++..+++. +...++.+|++... ....+......+.+. |..+.++.
T Consensus 66 ~~~p~~~~Le~~lA~l~g~~~av~~sS--G~aAi~~al~-all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~-Gi~v~~vdd 141 (436)
T PRK07812 66 IMNPTQDVVEQRIAALEGGVAALLLAS--GQAAETFAIL-NLAGAGDHIVSSPRLYGGTYNLFHYTLPKL-GIEVSFVED 141 (436)
T ss_pred CCCchHHHHHHHHHHHhCCCeEEEEcc--HHHHHHHHHH-HHhCCCCEEEEeCCcchHHHHHHHHHhhcC-eEEEEEECC
Confidence 667888999999999999988765554 5533332332 33455677776542 122233334445666 87766663
Q ss_pred c-chHHHhcCCC-CccEEEEeCCCccc--HHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 R-QAEEVMGELK-GVDFLVVDCTSKDF--ARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 G-dA~evL~~L~-~fDfVFIDa~K~~Y--~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
. |..++.+.+. +-.+|++..--... ..=++.+ +.. +.|.++|+||.+..+
T Consensus 142 ~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~ 197 (436)
T PRK07812 142 PDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATP 197 (436)
T ss_pred CCCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 2 3333444453 56799988644222 2122223 222 558899999987543
No 446
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.64 E-value=37 Score=30.21 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=57.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce------------EEEEecchHHH
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV------------SEVIVRQAEEV 107 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~------------I~li~GdA~ev 107 (223)
+.-++|-=||+| ..+++|+.+.+. .+-.|+-+|++++..+.+++.+++..|.- +++ ..|..+.
T Consensus 2 ~~~~~I~vIGaG--~mG~~iA~~l~~--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 76 (311)
T PRK06130 2 NPIQNLAIIGAG--TMGSGIAALFAR--KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA 76 (311)
T ss_pred CCccEEEEECCC--HHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH
Confidence 344788889885 456666655443 34579999999999988887654321210 111 1232222
Q ss_pred hcCCCCccEEEEeCCCcc---cHHHHHHhccC-CCceEEEEeCC
Q 027409 108 MGELKGVDFLVVDCTSKD---FARVLRFARFS-NKGAVLAFKNA 147 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~~---Y~~~f~~~~~l-~~GgvIV~DNv 147 (223)
+ ...|+||+=. +++ -..+|..+..+ +++.+ |+-|.
T Consensus 77 ~---~~aDlVi~av-~~~~~~~~~v~~~l~~~~~~~~i-i~s~t 115 (311)
T PRK06130 77 V---SGADLVIEAV-PEKLELKRDVFARLDGLCDPDTI-FATNT 115 (311)
T ss_pred h---ccCCEEEEec-cCcHHHHHHHHHHHHHhCCCCcE-EEECC
Confidence 2 3689988854 443 45677766544 55544 44444
No 447
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=75.58 E-value=23 Score=30.54 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=53.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEe-------------------CCchHHHHHHHHHHhhcCce--EE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIV-------------------PDERSRLAYVKAMYDVVGWV--SE 98 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE-------------------~d~e~~~~Ar~~~~~a~G~~--I~ 98 (223)
.+.++|+=||+| | .+|.++...+... =|+++=+| +...+.+.+++.+++. +-. |+
T Consensus 19 L~~~~VlivG~G-g-lGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~ 94 (228)
T cd00757 19 LKNARVLVVGAG-G-LGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIE 94 (228)
T ss_pred HhCCcEEEECCC-H-HHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEE
Confidence 346789999998 4 3566665555433 26777774 4456778888888887 433 66
Q ss_pred EEecch-HHHhcC-CCCccEEEEeCCCcccHHHH
Q 027409 99 VIVRQA-EEVMGE-LKGVDFLVVDCTSKDFARVL 130 (223)
Q Consensus 99 li~GdA-~evL~~-L~~fDfVFIDa~K~~Y~~~f 130 (223)
.+.... .+-+.+ +..+|+|+.=.+...-..++
T Consensus 95 ~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l 128 (228)
T cd00757 95 AYNERLDAENAEELIAGYDLVLDCTDNFATRYLI 128 (228)
T ss_pred EecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHH
Confidence 665544 222333 35799887655544433334
No 448
>PLN02509 cystathionine beta-lyase
Probab=75.55 E-value=56 Score=31.68 Aligned_cols=121 Identities=11% Similarity=0.036 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch-HHHHHHHHHHhhcCceEEEEecch
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER-SRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e-~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
.|...+|=..+++..++..++=. ..|. ++|.++.+...+|-+|++-+..-. .....+..+.+. |..+.++.-.-
T Consensus 132 npt~~aLE~~lA~leg~e~ai~~--~SG~--aAi~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~-G~~v~~vd~~d 206 (464)
T PLN02509 132 NPTRDALESLLAKLDKADRAFCF--TSGM--AALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTN 206 (464)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEe--CcHH--HHHHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHC-CeEEEEeCCCC
Confidence 47788888889999998887644 3355 344443344455667776544321 222334455666 88744433222
Q ss_pred HHHhc-CCC-CccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 105 EEVMG-ELK-GVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 105 ~evL~-~L~-~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+.+. .+. +-.+|++..- ......-++.+ ... +.|.++|+||.+..+
T Consensus 207 ~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~ 259 (464)
T PLN02509 207 LDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSP 259 (464)
T ss_pred HHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 34344 343 5689998763 33334444444 333 679999999997544
No 449
>PRK06153 hypothetical protein; Provisional
Probab=75.51 E-value=32 Score=32.96 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=57.1
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC--------------------c--hHHHHHHHHHHhhc
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD--------------------E--RSRLAYVKAMYDVV 93 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d--------------------~--e~~~~Ar~~~~~a~ 93 (223)
+.+..+.++|+=|||| |. +|.++..+|..+ =|+|+=+|.| . .+.+.+++.+.+.
T Consensus 170 ~q~kL~~~~VaIVG~G-G~-GS~Va~~LAR~G-VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~i- 245 (393)
T PRK06153 170 LSAKLEGQRIAIIGLG-GT-GSYILDLVAKTP-VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNM- 245 (393)
T ss_pred HHHHHhhCcEEEEcCC-cc-HHHHHHHHHHcC-CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHh-
Confidence 3455677899999998 54 466655555433 3789888876 1 3555677777776
Q ss_pred CceEEEEecch-HHHhcCCCCccEEEEeCCCcccHHHHH
Q 027409 94 GWVSEVIVRQA-EEVMGELKGVDFLVVDCTSKDFARVLR 131 (223)
Q Consensus 94 G~~I~li~GdA-~evL~~L~~fDfVFIDa~K~~Y~~~f~ 131 (223)
+..|+.+...- .+.+..+..+|+||.=.|.......+.
T Consensus 246 n~~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln 284 (393)
T PRK06153 246 RRGIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIV 284 (393)
T ss_pred CCeEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHH
Confidence 64433332211 122334568999987777666665553
No 450
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=75.41 E-value=18 Score=31.71 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=44.3
Q ss_pred EEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHH---HHHHHHHHhhcCc-------e-EEEEecchHH-------
Q 027409 45 IVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSR---LAYVKAMYDVVGW-------V-SEVIVRQAEE------- 106 (223)
Q Consensus 45 ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~---~~Ar~~~~~a~G~-------~-I~li~GdA~e------- 106 (223)
||=.|. +|+.++.+.-.........+|+++.+++... +..++.++.. ++ . ++++.||..+
T Consensus 2 vlvtGa-tG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 2 VLLTGA-TGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSY-RLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred EEEecc-chHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHh-CCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 454444 4776776554433332236899999887632 2333344443 32 3 8999999532
Q ss_pred -HhcCC-CCccEEEEeCCC
Q 027409 107 -VMGEL-KGVDFLVVDCTS 123 (223)
Q Consensus 107 -vL~~L-~~fDfVFIDa~K 123 (223)
.+..+ ..+|.|+.-|+.
T Consensus 80 ~~~~~~~~~~d~vih~a~~ 98 (367)
T TIGR01746 80 AEWERLAENVDTIVHNGAL 98 (367)
T ss_pred HHHHHHHhhCCEEEeCCcE
Confidence 22222 479999877764
No 451
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=75.40 E-value=13 Score=35.24 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=84.1
Q ss_pred cccChhHHHHHHHHhhcccCC------------CCcHHHHHHHHH---HHHhc-CCC-e---EEEEccCcchHHHHHHHH
Q 027409 3 LVWSPDAASKAYIDTVKSCEN------------IKESGVAELLSA---MAAGW-NAK-L---IVEAWTHGGPITTSIGLA 62 (223)
Q Consensus 3 ~~w~~~~a~~ayl~~l~~~~~------------ii~p~~g~fL~~---L~~~~-~ak-~---ILEIGT~~Gys~Stl~la 62 (223)
+.|-.++|.++--.+|....- +.=|.-.+++.+ |+... .-| + =++|||+ +|+|..+
T Consensus 44 ~Dfkd~~AvR~Lt~tLL~~Dfgl~veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtg----asci~~l 119 (419)
T KOG2912|consen 44 LDFKDPEAVRALTCTLLREDFGLSVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTG----ASCIYPL 119 (419)
T ss_pred eecCCHHHHHHHHHHHHhhccCceEecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCc----hhhhHHh
Confidence 467778888888777776552 222333444443 33332 122 2 2578875 3788777
Q ss_pred HhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH-HhcC-C---CCccEEEEeCCCcccHHHHHHh
Q 027409 63 IAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE-VMGE-L---KGVDFLVVDCTSKDFARVLRFA 133 (223)
Q Consensus 63 ~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e-vL~~-L---~~fDfVFIDa~K~~Y~~~f~~~ 133 (223)
+.++..+=..+.+|+|......|++|..+- +++ |.++.-.+.. +|++ + ...||-|.=|++.-|..+.|+-
T Consensus 120 lg~rq~n~~f~~teidd~s~~~a~snV~qn-~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~ 196 (419)
T KOG2912|consen 120 LGARQNNWYFLATEIDDMSFNYAKSNVEQN-NLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAK 196 (419)
T ss_pred hhchhccceeeeeeccccccchhhcccccc-ccccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhc
Confidence 677666667899999999999999999998 888 8888877754 4443 3 2455666678887777777643
No 452
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=75.31 E-value=9.1 Score=33.22 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=62.2
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcCC--CCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGEL--KGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~L--~~fDfVF 118 (223)
++++=||+|- -+++++- .....+-.++.||.|++..+.+. ++. +....+.|||. ++|.++ ..+|.+.
T Consensus 1 m~iiIiG~G~--vG~~va~--~L~~~g~~Vv~Id~d~~~~~~~~---~~~--~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGAGR--VGRSVAR--ELSEEGHNVVLIDRDEERVEEFL---ADE--LDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred CEEEEECCcH--HHHHHHH--HHHhCCCceEEEEcCHHHHHHHh---hhh--cceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 3567778762 2344443 33334457999999998755532 211 22578889995 488887 4899999
Q ss_pred EeCCCcccHHHHHHh--ccC-CCceEEEEeCCC
Q 027409 119 VDCTSKDFARVLRFA--RFS-NKGAVLAFKNAF 148 (223)
Q Consensus 119 IDa~K~~Y~~~f~~~--~~l-~~GgvIV~DNvl 148 (223)
.......---.+-.+ +.+ .|.-+.-+.|--
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 998876555444322 434 777777777753
No 453
>PRK05650 short chain dehydrogenase; Provisional
Probab=75.19 E-value=20 Score=30.68 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=50.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----CCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----ELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~L~ 112 (223)
++||=.|++.| +++.++...+ ..+.+|+.++++++..+.+...++.. |-.+.++.+|..+ .+. .++
T Consensus 1 ~~vlVtGasgg-IG~~la~~l~--~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASG-LGRAIALRWA--REGWRLALADVNEEGGEETLKLLREA-GGDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCCh-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46788887655 4555544433 34678999999988877777777766 6556777777632 222 124
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
++|.++.-|.
T Consensus 77 ~id~lI~~ag 86 (270)
T PRK05650 77 GIDVIVNNAG 86 (270)
T ss_pred CCCEEEECCC
Confidence 6898888765
No 454
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=75.15 E-value=6.2 Score=35.80 Aligned_cols=122 Identities=15% Similarity=0.068 Sum_probs=69.0
Q ss_pred HHHHHHH----HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 28 GVAELLS----AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 28 ~~g~fL~----~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+--.||. .|+...+.+..|+||||.=...-+=-.|.+. .++++|+.+|.||--..-++..+... .-. ..++.+
T Consensus 51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~-~P~aRVVYVD~DPvv~ah~ralL~~~-~~g~t~~v~a 128 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRV-APDARVVYVDNDPVVLAHARALLADN-PRGRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH--TT-EEEEEESSHHHHHCCHHHHTT--TTSEEEEEE-
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhh-CCCceEEEECCCchHHHHHHhhhcCC-CCccEEEEeC
Confidence 3345554 4455568999999999864322333455443 45899999999999999999999876 332 788889
Q ss_pred chHH---HhcC-----C----CCccEEEEe-----CCCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 103 QAEE---VMGE-----L----KGVDFLVVD-----CTSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~e---vL~~-----L----~~fDfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
|..+ +|.. + .+.=++++. .+-++=...+..+ ..++||+.++....-...
T Consensus 129 D~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 129 DLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp -TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred CCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 8764 6652 1 144455553 2333446677655 567999999999886544
No 455
>PRK07814 short chain dehydrogenase; Provisional
Probab=75.03 E-value=23 Score=30.30 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=50.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hh----cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VM----GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL----~~ 110 (223)
.-+.+|=.|.+.| .+..++...+ ..+.+|+.++++++..+...+.++.. +..+.++..|..+ .+ ..
T Consensus 9 ~~~~vlItGasgg-IG~~~a~~l~--~~G~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRG-LGAAIALAFA--EAGADVLIAARTESQLDEVAEQIRAA-GRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3478899997655 4555544333 34779999999988777777777665 5456666666321 11 22
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.||.-|.
T Consensus 85 ~~~id~vi~~Ag 96 (263)
T PRK07814 85 FGRLDIVVNNVG 96 (263)
T ss_pred cCCCCEEEECCC
Confidence 347899987654
No 456
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.88 E-value=22 Score=29.49 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=51.0
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEE-eCCchHHHHHHHHHHhhcCceEEEEecchHH--Hh----cC----
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCI-VPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VM----GE---- 110 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TI-E~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL----~~---- 110 (223)
-++||=+|...| .++.++...+ ..+.+++.+ .++++..+.....+... +..+.++.+|..+ .+ ..
T Consensus 5 ~~~ilI~Gasg~-iG~~la~~l~--~~g~~v~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 5 GKVAIVTGASGG-IGRAIAELLA--KEGAKVVIAYDINEEAAQELLEEIKEE-GGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHH--HCCCEEEEEcCCCHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 368899997645 4555554433 336678777 99888777777777765 6558888888632 22 21
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+.++|.||.-+.
T Consensus 81 ~~~id~vi~~ag 92 (247)
T PRK05565 81 FGKIDILVNNAG 92 (247)
T ss_pred hCCCCEEEECCC
Confidence 237999998664
No 457
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=74.87 E-value=9.5 Score=33.23 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=39.3
Q ss_pred chHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh--cC-ce--EEEEecchHH----HhcCC--CCccEEEEeC
Q 027409 53 GPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV--VG-WV--SEVIVRQAEE----VMGEL--KGVDFLVVDC 121 (223)
Q Consensus 53 Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a--~G-~~--I~li~GdA~e----vL~~L--~~fDfVFIDa 121 (223)
|=++.++-||.+....+-+|.-||.||+.. +-..+++. .+ .. ......+..+ .+..+ +.||+||||+
T Consensus 14 GKTT~a~nLA~~la~~G~~VlliD~DpQ~s--~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~yD~iiID~ 91 (231)
T PRK13849 14 GKTTALMGLCAALASDGKRVALFEADENRP--LTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALADT 91 (231)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEEeCCCCCC--HHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 433444455544444455899999999853 22233222 01 11 1222222222 23333 3699999999
Q ss_pred CCcccHHHHH
Q 027409 122 TSKDFARVLR 131 (223)
Q Consensus 122 ~K~~Y~~~f~ 131 (223)
..........
T Consensus 92 pp~~~~~~~~ 101 (231)
T PRK13849 92 HGGSSELNNT 101 (231)
T ss_pred CCCccHHHHH
Confidence 8766544433
No 458
>PLN02242 methionine gamma-lyase
Probab=74.81 E-value=32 Score=32.57 Aligned_cols=121 Identities=14% Similarity=0.065 Sum_probs=69.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHh-hcCceEEEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYD-VVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~-a~G~~I~li 100 (223)
.-+|.+.+|=..|+...+.+.++ + |+.|. .++.++. +...++.+|++.+.. +.........+.+ . |..+.++
T Consensus 73 ~~~Pt~~~LE~~lA~l~g~~~~l-~-~~sG~--~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~-G~~~~~~ 147 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEGTEAAY-C-TASGM--SAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKC-NITTTFV 147 (418)
T ss_pred CCChhHHHHHHHHHHHhCCCeEE-E-EccHH--HHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhcc-CceEEEc
Confidence 45888999999999999999987 3 45565 4443332 334556677755531 1112222223334 5 7776655
Q ss_pred ecchHHHhc-CCC--CccEEEEeCCCc--ccHHHHHHh-ccC-CCceEEEEeCCCC
Q 027409 101 VRQAEEVMG-ELK--GVDFLVVDCTSK--DFARVLRFA-RFS-NKGAVLAFKNAFQ 149 (223)
Q Consensus 101 ~GdA~evL~-~L~--~fDfVFIDa~K~--~Y~~~f~~~-~~l-~~GgvIV~DNvl~ 149 (223)
..+-.+.|. .+. +..+|++..--. ....-++.+ ... +.|..||+||++.
T Consensus 148 d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~ 203 (418)
T PLN02242 148 DITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFA 203 (418)
T ss_pred CCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCC
Confidence 554334344 343 378999985311 111223333 333 5688999999874
No 459
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.78 E-value=16 Score=36.97 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=25.9
Q ss_pred cCCCeEEEEccCcchHHHHH--HHHHhcCCCCcEEEEEeCCchHHHH
Q 027409 40 WNAKLIVEAWTHGGPITTSI--GLAIAARHTCARHVCIVPDERSRLA 84 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl--~la~A~~~~~g~i~TIE~d~e~~~~ 84 (223)
.+++.|.=.++-.|.+-|++ .||.+....|.++.-||.|+..-..
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l 590 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAAL 590 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhH
Confidence 34555555555444443443 4444444456789999999875433
No 460
>PRK07576 short chain dehydrogenase; Provisional
Probab=74.77 E-value=18 Score=31.14 Aligned_cols=77 Identities=19% Similarity=0.165 Sum_probs=49.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~ 110 (223)
.-|+||=.|.+.| .++.++...+ ..+.+|+.++++++..+...+.+... +..+.++..|..+ .+. .
T Consensus 8 ~~k~ilItGasgg-IG~~la~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGGTSG-INLGIAQAFA--RAGANVAVASRSQEKVDAAVAQLQQA-GPEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECCCch-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHHh-CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578998887655 4566554443 34678999999988777666667665 5445666666531 122 2
Q ss_pred CCCccEEEEeC
Q 027409 111 LKGVDFLVVDC 121 (223)
Q Consensus 111 L~~fDfVFIDa 121 (223)
+..+|.++.-|
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 34689887544
No 461
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=74.52 E-value=16 Score=30.99 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=52.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hh--------cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VM--------GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL--------~~ 110 (223)
.-++||=.|.+.| .++.++...+ ..+.+|+-++++++..+...+.+... +..+.++.+|..+ .+ ..
T Consensus 11 ~~k~ilItGa~g~-IG~~la~~l~--~~G~~V~~~~r~~~~~~~~~~~i~~~-~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 11 SGKTALVTGGSRG-LGLQIAEALG--EAGARVVLSARKAEELEEAAAHLEAL-GIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCCEEEEECCCch-HHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3478999997644 4566554433 34668999999988888777777776 6667778887652 22 22
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+.++|.|+.=|.
T Consensus 87 ~~~id~vi~~ag 98 (259)
T PRK08213 87 FGHVDILVNNAG 98 (259)
T ss_pred hCCCCEEEECCC
Confidence 246898877654
No 462
>PRK10083 putative oxidoreductase; Provisional
Probab=74.41 E-value=49 Score=29.14 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=52.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC-Ccc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK-GVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~-~fD 115 (223)
..-.+||=.|+ .+.+..++.+|.+.+ +. .+++++.++++.+.+++ . |.. +.....+..+.+.... .+|
T Consensus 159 ~~g~~vlI~g~-g~vG~~~~~~a~~~~--G~~~v~~~~~~~~~~~~~~~----~-Ga~~~i~~~~~~~~~~~~~~g~~~d 230 (339)
T PRK10083 159 TEQDVALIYGA-GPVGLTIVQVLKGVY--NVKAVIVADRIDERLALAKE----S-GADWVINNAQEPLGEALEEKGIKPT 230 (339)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHH----h-CCcEEecCccccHHHHHhcCCCCCC
Confidence 34458888884 455444445554322 33 58889998888777764 3 544 3333334444554322 244
Q ss_pred EEEEeCCCcccHHHH-HHhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVL-RFARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f-~~~~~l~~GgvIV~ 144 (223)
+++|+--.. ..+ +.++.++++|.++.
T Consensus 231 -~vid~~g~~--~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 231 -LIIDAACHP--SILEEAVTLASPAARIVL 257 (339)
T ss_pred -EEEECCCCH--HHHHHHHHHhhcCCEEEE
Confidence 677875432 223 34566677777764
No 463
>PRK06125 short chain dehydrogenase; Provisional
Probab=74.14 E-value=21 Score=30.32 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=50.3
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcCCCCcc
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGELKGVD 115 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~L~~fD 115 (223)
-+.+|=.|.+.|. +.+++...+ ..+.+|+.++++++..+.+.+.+++..+..+.++..|..+ .+..+.+.|
T Consensus 7 ~k~vlItG~~~gi-G~~ia~~l~--~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 7 GKRVLITGASKGI-GAAAAEAFA--AEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCEEEEeCCCchH-HHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 4788999987663 455544333 3467999999999888877777775413336666666521 223345788
Q ss_pred EEEEeCC
Q 027409 116 FLVVDCT 122 (223)
Q Consensus 116 fVFIDa~ 122 (223)
.++.-+.
T Consensus 84 ~lv~~ag 90 (259)
T PRK06125 84 ILVNNAG 90 (259)
T ss_pred EEEECCC
Confidence 8877553
No 464
>PRK07049 methionine gamma-lyase; Validated
Probab=74.11 E-value=34 Score=32.48 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=71.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEe-CCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIV-PDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE-~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
.-+|....+-..|++..++..++=.++| . ++|.++. +...++.+|++.+ ..+......+..++.. |.. +.+.
T Consensus 80 ~~~Pt~~~Le~~lA~leg~~~~iv~~sG--~--~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~-Gi~~v~~~ 154 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYEGAESAALFSSG--M--SAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNF-GVGAVGFA 154 (427)
T ss_pred CCCcCHHHHHHHHHHHhCCCcEEEEccH--H--HHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhc-CcEEEEEe
Confidence 4578889999999999999888776554 4 3333322 3345566777655 3334444446667777 998 7776
Q ss_pred ecchHHHhc----C-C--CCccEEEEeCCCcc---c----HHHHHHhccC---C-CceEEEEeCCCC
Q 027409 101 VRQAEEVMG----E-L--KGVDFLVVDCTSKD---F----ARVLRFARFS---N-KGAVLAFKNAFQ 149 (223)
Q Consensus 101 ~GdA~evL~----~-L--~~fDfVFIDa~K~~---Y----~~~f~~~~~l---~-~GgvIV~DNvl~ 149 (223)
.+.-.+.|. + + .+-.+||+.. ..+ . .++-++++.. + .|.+||+||.+.
T Consensus 155 ~~~d~~~l~~~l~~~~~~~~tklv~les-P~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~ 220 (427)
T PRK07049 155 DGLSEAAIGAAAEAAAAKGRVSLILIET-PANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLL 220 (427)
T ss_pred CCCCHHHHHHHHHhhccCCCceEEEEEC-CCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcc
Confidence 553233232 1 1 2578999984 322 1 2222233321 1 577888999964
No 465
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=74.07 E-value=27 Score=33.34 Aligned_cols=124 Identities=14% Similarity=0.075 Sum_probs=83.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEE-EEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHV-CIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~-TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|..-.|=..++.+-++...+=.-||-+-+ +.++. +...+|-+|+ +=+...--+....+.+++. |+++++...
T Consensus 60 ~~nPT~~~lE~~~a~LEg~~~~~afsSGmaAI--~~~~l-~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~-gi~~~~~d~ 135 (396)
T COG0626 60 TGNPTRDALEEALAELEGGEDAFAFSSGMAAI--STALL-ALLKAGDHVLLPDDLYGGTYRLFEKILQKF-GVEVTFVDP 135 (396)
T ss_pred CCCccHHHHHHHHHHhhCCCcEEEecCcHHHH--HHHHH-HhcCCCCEEEecCCccchHHHHHHHHHHhc-CeEEEEECC
Confidence 34677778888888888999988876665432 22221 2334455544 4555777778888888887 998776553
Q ss_pred -chHHHhcCC--CCccEEEEeCCCcccHHHHH--Hh-ccC-CCceEEEEeCCCCCC
Q 027409 103 -QAEEVMGEL--KGVDFLVVDCTSKDFARVLR--FA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 -dA~evL~~L--~~fDfVFIDa~K~~Y~~~f~--~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+..+ ++.++||+..--.-..+..+ .+ +.- +.|.++|+||.|...
T Consensus 136 ~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 136 GDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred CChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 444566555 37999999986555555554 23 333 667999999998755
No 466
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=73.94 E-value=44 Score=31.88 Aligned_cols=122 Identities=15% Similarity=0.051 Sum_probs=75.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+.+|=..+++..+++.. +-|+.|- ++|.++. +...++.+|++....- .........+.+. |..+.++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~~~a--v~~sSGt--~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~-Gi~v~~vd 135 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGGVGA--IATASGQ--AALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRF-GIETTFVK 135 (433)
T ss_pred CcChHHHHHHHHHHHHhCCCcE--EEeCCHH--HHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhC-CeEEEEEC
Confidence 5578899999999999999885 6677775 4443322 2344566888876643 3344445556677 98877765
Q ss_pred cchHHHhcC-C-CCccEEEEeCCCccc---HHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCTSKDF---ARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~K~~Y---~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+-.+.|.+ + ++-.+|++-.- .+- ..=++.+ ... +.|..+|+||.+.-+
T Consensus 136 ~~d~~~l~~~i~~~TklV~~e~~-~np~g~v~Di~~I~~la~~~gi~livD~t~a~~ 191 (433)
T PRK08134 136 PGDIDGWRAAIRPNTRLLFGETL-GNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTP 191 (433)
T ss_pred CCCHHHHHHhcCCCCeEEEEECC-CcccCcccCHHHHHHHHHHcCCEEEEECCCccc
Confidence 443444443 4 35678888763 221 1123333 333 668899999997544
No 467
>PRK05854 short chain dehydrogenase; Provisional
Probab=73.93 E-value=20 Score=32.00 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=52.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-eEEEEecchHH----------Hhc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-VSEVIVRQAEE----------VMG 109 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~I~li~GdA~e----------vL~ 109 (223)
.-|.+|=.|.+.|. +..++...+ ..+.+|+-+.++++..+.+.+.+.+..+- .+.++..|..+ +..
T Consensus 13 ~gk~~lITGas~GI-G~~~a~~La--~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 13 SGKRAVVTGASDGL-GLGLARRLA--AAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred CCCEEEEeCCCChH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 45789999988774 455554443 34789999999999888888777654122 36777766532 112
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
..++.|.++.-|.
T Consensus 90 ~~~~iD~li~nAG 102 (313)
T PRK05854 90 EGRPIHLLINNAG 102 (313)
T ss_pred hCCCccEEEECCc
Confidence 2346899887764
No 468
>PLN00106 malate dehydrogenase
Probab=73.76 E-value=27 Score=32.27 Aligned_cols=81 Identities=10% Similarity=0.058 Sum_probs=48.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE--ecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI--VRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li--~GdA~evL~~L~~fDfV 117 (223)
..+++|+=||++ |..+++++.+.+...-...|+-+|+++ ....|. -+.++ ...+.+. .++. +.-..+..-|+|
T Consensus 16 ~~~~KV~IiGaa-G~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~-Dl~~~-~~~~~i~~~~~~~-d~~~~l~~aDiV 90 (323)
T PLN00106 16 APGFKVAVLGAA-GGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAA-DVSHI-NTPAQVRGFLGDD-QLGDALKGADLV 90 (323)
T ss_pred CCCCEEEEECCC-CHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEc-hhhhC-CcCceEEEEeCCC-CHHHHcCCCCEE
Confidence 356789999985 446788888776555556899999988 212222 23333 2222332 2332 222345579999
Q ss_pred EEeCCCcc
Q 027409 118 VVDCTSKD 125 (223)
Q Consensus 118 FIDa~K~~ 125 (223)
++=|....
T Consensus 91 VitAG~~~ 98 (323)
T PLN00106 91 IIPAGVPR 98 (323)
T ss_pred EEeCCCCC
Confidence 99887533
No 469
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=73.76 E-value=38 Score=30.64 Aligned_cols=93 Identities=18% Similarity=0.113 Sum_probs=51.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEec--chHHHhcCC--C
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR--QAEEVMGEL--K 112 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G--dA~evL~~L--~ 112 (223)
..-.+||=+|++ +.+..++.+|.+ -+. +|+.++.++++.+.|++ . |.. +....- +..+.+.++ .
T Consensus 183 ~~g~~vlV~G~g-~vG~~~~~~a~~---~G~~~Vi~~~~~~~~~~~~~~----~-ga~~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 183 EPGSTVAVFGLG-AVGLSAIMGAKI---AGASRIIGVDINEDKFEKAKE----F-GATDFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHH---cCCCeEEEEeCCHHHHHHHHH----c-CCCcEeccccccchHHHHHHHHhCC
Confidence 345788888863 543344455543 255 79999999988777754 3 543 332221 112333332 3
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCCc-eEEEE
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNKG-AVLAF 144 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~ 144 (223)
.+|+|| |+--. ...+. .+..+++| |.+|.
T Consensus 254 g~d~vi-d~~g~--~~~~~~~~~~l~~~~G~~v~ 284 (365)
T cd08277 254 GVDYSF-ECTGN--ADLMNEALESTKLGWGVSVV 284 (365)
T ss_pred CCCEEE-ECCCC--hHHHHHHHHhcccCCCEEEE
Confidence 699776 76533 23443 55666553 65553
No 470
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=73.72 E-value=50 Score=31.69 Aligned_cols=118 Identities=10% Similarity=0.053 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeC-CchHHHHHHHHHHhhcCceEEEEecc
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVP-DERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~-d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.|.+.+|=..+++..+.+..|= |+.|- ++|.++. +...+|.+|++-.. ...........+.+. |..++++...
T Consensus 60 nPtv~~lE~~la~leg~~~av~--~~SG~--aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~-Gi~v~~vd~~ 134 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGVGAVA--TASGQ--AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKL-GIDVTFFNPN 134 (432)
T ss_pred CcHHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHC-CCEEEEECCC
Confidence 6899999999999999988765 55555 4443332 23456678777443 222334444456777 9987777652
Q ss_pred -hHHHhcC-C-CCccEEEEeCCCcccH-H--HHHHh-ccC-CCceEEEEeCCCC
Q 027409 104 -AEEVMGE-L-KGVDFLVVDCTSKDFA-R--VLRFA-RFS-NKGAVLAFKNAFQ 149 (223)
Q Consensus 104 -A~evL~~-L-~~fDfVFIDa~K~~Y~-~--~f~~~-~~l-~~GgvIV~DNvl~ 149 (223)
-.+.+.+ + ++-.+||+.. ..+=. + -++.+ ... +.|.++|+||.+.
T Consensus 135 ~d~~~l~~~I~~~Tk~I~~e~-pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~ 187 (432)
T PRK06702 135 LTADEIVALANDKTKLVYAES-LGNPAMNVLNFKEFSDAAKELEVPFIVDNTLA 187 (432)
T ss_pred CCHHHHHHhCCcCCeEEEEEc-CCCccccccCHHHHHHHHHHcCCEEEEECCCC
Confidence 2233443 3 3567898875 22221 0 23333 222 6688999999873
No 471
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=73.67 E-value=29 Score=31.16 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=51.1
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch-------HHHhcCCCCc
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA-------EEVMGELKGV 114 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA-------~evL~~L~~f 114 (223)
..+|+=||+|. .+++++.+.+. .+-.|+-+.+++. + .+.+. |+.+.-..|+- ......+.+|
T Consensus 5 ~m~I~IiG~Ga--iG~~lA~~L~~--~g~~V~~~~r~~~--~----~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (313)
T PRK06249 5 TPRIGIIGTGA--IGGFYGAMLAR--AGFDVHFLLRSDY--E----AVREN-GLQVDSVHGDFHLPPVQAYRSAEDMPPC 73 (313)
T ss_pred CcEEEEECCCH--HHHHHHHHHHH--CCCeEEEEEeCCH--H----HHHhC-CeEEEeCCCCeeecCceEEcchhhcCCC
Confidence 35799999862 45555544433 2445777777652 1 24455 55433223321 1111123579
Q ss_pred cEEEEeCCCcccHHHHHHhcc-CCCceEEE
Q 027409 115 DFLVVDCTSKDFARVLRFARF-SNKGAVLA 143 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~~~~~-l~~GgvIV 143 (223)
|+||+=..-.+-.+.++.+.+ +.++++|+
T Consensus 74 D~vilavK~~~~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 74 DWVLVGLKTTANALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred CEEEEEecCCChHhHHHHHhhhcCCCCEEE
Confidence 999997755556667777755 46677665
No 472
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=73.66 E-value=13 Score=32.08 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCchH
Q 027409 56 TTSIGLAIAARHTCARHVCIVPDERS 81 (223)
Q Consensus 56 ~Stl~la~A~~~~~g~i~TIE~d~e~ 81 (223)
+++.-||.+....|-+|.-||.||+.
T Consensus 16 T~~~nLA~~La~~G~kVlliD~Dpq~ 41 (270)
T cd02040 16 TTTQNLSAALAEMGKKVMIVGCDPKA 41 (270)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 33444554444445579999999883
No 473
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=73.61 E-value=18 Score=27.28 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=29.0
Q ss_pred HHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCC
Q 027409 85 YVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 85 Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~ 122 (223)
.++.+++. |+++++...+..++-...+.||+|++=-.
T Consensus 19 i~~~~~~~-~~~~~v~~~~~~~~~~~~~~~Diil~~Pq 55 (96)
T cd05564 19 MKKAAEKR-GIDAEIEAVPESELEEYIDDADVVLLGPQ 55 (96)
T ss_pred HHHHHHHC-CCceEEEEecHHHHHHhcCCCCEEEEChh
Confidence 37778888 88889998888886544568999999654
No 474
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=73.45 E-value=17 Score=32.16 Aligned_cols=92 Identities=13% Similarity=0.028 Sum_probs=52.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
..-.+||=+|++ +.+..++.+|.+ .+.+ |+.++.++++.+.|++ . |.. +.....+ .+.+.++ ..
T Consensus 162 ~~g~~vlV~G~G-~vG~~~~~~ak~---~G~~~vi~~~~~~~~~~~~~~----~-ga~~~i~~~~~~-~~~~~~~~~~~~ 231 (339)
T cd08239 162 SGRDTVLVVGAG-PVGLGALMLARA---LGAEDVIGVDPSPERLELAKA----L-GADFVINSGQDD-VQEIRELTSGAG 231 (339)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHH---cCCCEEEEECCCHHHHHHHHH----h-CCCEEEcCCcch-HHHHHHHhCCCC
Confidence 345688888863 543344455543 3566 9999999888777654 3 543 3333333 3333333 26
Q ss_pred ccEEEEeCCCcccHHHH-HHhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVL-RFARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f-~~~~~l~~GgvIV~ 144 (223)
+|+|| |+--.. ..+ ..++.+++||.++.
T Consensus 232 ~d~vi-d~~g~~--~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 232 ADVAI-ECSGNT--AARRLALEAVRPWGRLVL 260 (339)
T ss_pred CCEEE-ECCCCH--HHHHHHHHHhhcCCEEEE
Confidence 99775 664322 233 34566677777764
No 475
>PRK08703 short chain dehydrogenase; Provisional
Probab=73.45 E-value=21 Score=29.91 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=48.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH--------H----
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE--------E---- 106 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~--------e---- 106 (223)
.+.++||=.|++.|. +.+++... ...+.+|+.+.++++..+...+.+.+. +.. +.++..|.. +
T Consensus 4 l~~k~vlItG~sggi-G~~la~~l--~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK08703 4 LSDKTILVTGASQGL-GEQVAKAY--AAAGATVILVARHQKKLEKVYDAIVEA-GHPEPFAIRFDLMSAEEKEFEQFAAT 79 (239)
T ss_pred CCCCEEEEECCCCcH-HHHHHHHH--HHcCCEEEEEeCChHHHHHHHHHHHHc-CCCCcceEEeeecccchHHHHHHHHH
Confidence 345899999987664 55554443 334678999999998877776666654 422 333333321 1
Q ss_pred HhcCC-CCccEEEEeCC
Q 027409 107 VMGEL-KGVDFLVVDCT 122 (223)
Q Consensus 107 vL~~L-~~fDfVFIDa~ 122 (223)
+...+ ..+|.|+.-|.
T Consensus 80 i~~~~~~~id~vi~~ag 96 (239)
T PRK08703 80 IAEATQGKLDGIVHCAG 96 (239)
T ss_pred HHHHhCCCCCEEEEecc
Confidence 11223 46799887775
No 476
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=73.42 E-value=37 Score=29.45 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=53.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecc-hHHHhcCC---CCc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQ-AEEVMGEL---KGV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~Gd-A~evL~~L---~~f 114 (223)
.-.+||=.|.+.+.+..++.+|.+ .+.+++.+..++++.+.+++ . |.. +.....+ ..+.+.++ ..+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~---~g~~v~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEK---YGAATIITTSSEEKVDFCKK----L-AAIILIRYPDEEGFAPKVKKLTGEKGV 211 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH----c-CCcEEEecCChhHHHHHHHHHhCCCCc
Confidence 446788888655553355566544 35677778888887776643 4 654 2222223 34444443 268
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|++| |+-.. ..+. .++.++++|-+|.
T Consensus 212 d~~i-~~~~~---~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 212 NLVL-DCVGG---SYLSETAEVLAVDGKWIV 238 (334)
T ss_pred eEEE-ECCch---HHHHHHHHHhccCCeEEE
Confidence 9887 77532 3444 4456677777764
No 477
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=73.38 E-value=8.5 Score=35.96 Aligned_cols=80 Identities=18% Similarity=0.069 Sum_probs=45.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcE--EEEEeCCch--------HHH-HHHHHHH-hhcCceEEEEecchH--
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCAR--HVCIVPDER--------SRL-AYVKAMY-DVVGWVSEVIVRQAE-- 105 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~--i~TIE~d~e--------~~~-~Ar~~~~-~a~G~~I~li~GdA~-- 105 (223)
++||+||-||.+.||+.++ -++.|-. .++. =+..|.-.. ++. .+=+-|+ ++ |+-..=++|||.
T Consensus 39 ngPKkVLviGaSsGyGLa~-RIsaaFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~k-GlyAksingDaFS~ 115 (398)
T COG3007 39 NGPKKVLVIGASSGYGLAA-RISAAFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQK-GLYAKSINGDAFSD 115 (398)
T ss_pred CCCceEEEEecCCcccHHH-HHHHHhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhc-CceeeecccchhhH
Confidence 5899999999999995333 4443322 2222 123333221 122 2222233 44 776777889995
Q ss_pred -------HHhcC-CCCccEEEEeCC
Q 027409 106 -------EVMGE-LKGVDFLVVDCT 122 (223)
Q Consensus 106 -------evL~~-L~~fDfVFIDa~ 122 (223)
|.|++ ++..|+|.---+
T Consensus 116 e~k~kvIe~Ik~~~g~vDlvvYSlA 140 (398)
T COG3007 116 EMKQKVIEAIKQDFGKVDLVVYSLA 140 (398)
T ss_pred HHHHHHHHHHHHhhccccEEEEecc
Confidence 33332 468999987643
No 478
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=73.35 E-value=26 Score=31.10 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=51.4
Q ss_pred chHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec------chHHHhcCCC--CccEEEEeCCCc
Q 027409 53 GPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR------QAEEVMGELK--GVDFLVVDCTSK 124 (223)
Q Consensus 53 Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G------dA~evL~~L~--~fDfVFIDa~K~ 124 (223)
|=..-+++||.+....+..++=+=.+.. ....+.+++. |+++..+.+ |+.+.+..+. ..|+|++|.- .
T Consensus 15 GHv~Rcl~LA~~l~~~g~~v~f~~~~~~--~~~~~~i~~~-g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y-~ 90 (279)
T TIGR03590 15 GHVMRCLTLARALHAQGAEVAFACKPLP--GDLIDLLLSA-GFPVYELPDESSRYDDALELINLLEEEKFDILIVDHY-G 90 (279)
T ss_pred cHHHHHHHHHHHHHHCCCEEEEEeCCCC--HHHHHHHHHc-CCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCC-C
Confidence 4446888898887554545443333222 1224678888 998555544 4555555553 6899999984 2
Q ss_pred ccHHHHHHhccCCCceEEEEeCCC
Q 027409 125 DFARVLRFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 125 ~Y~~~f~~~~~l~~GgvIV~DNvl 148 (223)
--.+|+..++...+ =+++.|+.-
T Consensus 91 ~~~~~~~~~k~~~~-~l~~iDD~~ 113 (279)
T TIGR03590 91 LDADWEKLIKEFGR-KILVIDDLA 113 (279)
T ss_pred CCHHHHHHHHHhCC-eEEEEecCC
Confidence 22234444443211 456666653
No 479
>PRK08589 short chain dehydrogenase; Validated
Probab=73.27 E-value=29 Score=29.90 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=48.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~ 110 (223)
.-|.+|=.|.+.|. +.+++...+ ..+.+|+.+.++ +..+...+.+++. +-.+.++..|..+ .+. .
T Consensus 5 ~~k~vlItGas~gI-G~aia~~l~--~~G~~vi~~~r~-~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 5 ENKVAVITGASTGI-GQASAIALA--QEGAYVLAVDIA-EAVSETVDKIKSN-GGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCEEEEECCCchH-HHHHHHHHH--HCCCEEEEEeCc-HHHHHHHHHHHhc-CCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 45789999988773 555554443 347899999998 5556555666655 5445555555321 122 2
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|.++.-|.
T Consensus 80 ~g~id~li~~Ag 91 (272)
T PRK08589 80 FGRVDVLFNNAG 91 (272)
T ss_pred cCCcCEEEECCC
Confidence 346898887764
No 480
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=72.95 E-value=18 Score=31.79 Aligned_cols=91 Identities=11% Similarity=0.049 Sum_probs=51.8
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc------hHHHhcCC-CCccE
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ------AEEVMGEL-KGVDF 116 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd------A~evL~~L-~~fDf 116 (223)
+|+=||+|. .+++++...+. .+-.|+-+++ +++.+.. ++. |+.++-..|+ +....... .++|+
T Consensus 2 kI~IiG~G~--iG~~~a~~L~~--~g~~V~~~~r-~~~~~~~----~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 2 RIAVVGAGA--VGGTFGGRLLE--AGRDVTFLVR-PKRAKAL----RER-GLVIRSDHGDAVVPGPVITDPEELTGPFDL 71 (305)
T ss_pred eEEEECCCH--HHHHHHHHHHH--CCCceEEEec-HHHHHHH----HhC-CeEEEeCCCeEEecceeecCHHHccCCCCE
Confidence 477788763 34555544432 2345777888 6655443 344 5432221111 11111222 57999
Q ss_pred EEEeCCCcccHHHHHHhcc-CCCceEEEE
Q 027409 117 LVVDCTSKDFARVLRFARF-SNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~~~~~-l~~GgvIV~ 144 (223)
||+=....+....++.+.+ +.++.+||.
T Consensus 72 vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 72 VILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred EEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 9998877777888887765 467776664
No 481
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=72.91 E-value=22 Score=32.03 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=51.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
....+||=.|++ +.+..++.+|.+ -+.+ +++++.++++.+.++ +. |.. +.....+..+.+..+ ..
T Consensus 186 ~~g~~VlI~g~g-~vG~~~~~lak~---~G~~~vi~~~~s~~~~~~~~----~~-g~~~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 186 RPGETVAVIGVG-GVGSSAIQLAKA---FGASPIIAVDVRDEKLAKAK----EL-GATHTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHH---cCCCeEEEEeCCHHHHHHHH----Hh-CCceEecCCcccHHHHHHHHhCCCC
Confidence 445677766653 444455556544 2455 888888887766554 34 543 232223333333332 36
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
+|+|| |+-... ...+ .++.++++|.+|.
T Consensus 257 ~d~vl-d~vg~~--~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 257 VDVVV-EALGKP--ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCEEE-EeCCCH--HHHHHHHHHHhcCCEEEE
Confidence 99887 875543 1333 3455666666653
No 482
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=72.79 E-value=20 Score=30.31 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=51.2
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------H----hcCC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------V----MGEL 111 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------v----L~~L 111 (223)
-|+||=.|.+.| .++.++...+ ..+.+++.++++++..+.....+++. |..+.++..|..+ . ...+
T Consensus 11 ~k~vlVtG~s~g-IG~~la~~l~--~~G~~vv~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 11 GKCAIITGAGAG-IGKEIAITFA--TAGASVVVSDINADAANHVVDEIQQL-GGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCEEEEECCCch-HHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 489999998866 4566554444 34678998999888877777777766 6555666666432 1 1223
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
..+|.++.=+.
T Consensus 87 ~~~d~li~~ag 97 (255)
T PRK06113 87 GKVDILVNNAG 97 (255)
T ss_pred CCCCEEEECCC
Confidence 46888877654
No 483
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=72.70 E-value=40 Score=29.45 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=51.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGV 114 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~f 114 (223)
...-.+||=.|.+.+.+-.++.+|.+ .+.+++.+..++++.+.++ +. |.. +.....+..+.+..+ ..+
T Consensus 137 ~~~~~~vlI~ga~g~ig~~~~~~a~~---~g~~v~~~~~~~~~~~~~~----~~-g~~~v~~~~~~~~~~~~~~~~~~~v 208 (329)
T cd08250 137 MKSGETVLVTAAAGGTGQFAVQLAKL---AGCHVIGTCSSDEKAEFLK----SL-GCDRPINYKTEDLGEVLKKEYPKGV 208 (329)
T ss_pred CCCCCEEEEEeCccHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHH----Hc-CCceEEeCCCccHHHHHHHhcCCCC
Confidence 34556888888654443355555543 3667888888887766553 34 543 222222233334333 368
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEE
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLA 143 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV 143 (223)
|+|| |+... ..+. .++.++++|.+|
T Consensus 209 d~v~-~~~g~---~~~~~~~~~l~~~g~~v 234 (329)
T cd08250 209 DVVY-ESVGG---EMFDTCVDNLALKGRLI 234 (329)
T ss_pred eEEE-ECCcH---HHHHHHHHHhccCCeEE
Confidence 9776 66443 2333 456666677665
No 484
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=72.62 E-value=33 Score=30.40 Aligned_cols=60 Identities=12% Similarity=-0.131 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHH
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAM 89 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~ 89 (223)
.++..--..+.-.++-..|=|.|-.|=+-. |.||.+ ...+|+=+=+|-|+.++..+++..
T Consensus 22 q~s~~Ei~~~~~VL~~raPCN~LVFGLghd---sllW~a---LN~gGrTvFLEEd~~~i~~~~~~~ 81 (225)
T TIGR01627 22 ALMEKELKLLSDVLTRRSPCNILVFGLAHQ---YLMWSS---LNHRGRTVFIEEEKIMIAKAEVNP 81 (225)
T ss_pred ccCHHHHHHHHHHHHhcCCceEEEeccCcc---hHHHHH---hcCCCeeEEecCCHHHHHHHhhcC
Confidence 556666667777777788899999999866 577754 456899999999999998887653
No 485
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.51 E-value=23 Score=32.93 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=52.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-------------------chHHHHHHHHHHhhcCce--EE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-------------------ERSRLAYVKAMYDVVGWV--SE 98 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-------------------~e~~~~Ar~~~~~a~G~~--I~ 98 (223)
.+.++||=||+| |. ++.++...+... =|+|+=+|.| ..+.+.+++.+++. .-. |+
T Consensus 133 l~~~~VlvvG~G-G~-Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~ 208 (376)
T PRK08762 133 LLEARVLLIGAG-GL-GSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVE 208 (376)
T ss_pred HhcCcEEEECCC-HH-HHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEE
Confidence 366789999997 42 455555444332 2689999998 56788888888876 332 54
Q ss_pred EEecchHH-HhcC-CCCccEEEEeCCCcccHHHH
Q 027409 99 VIVRQAEE-VMGE-LKGVDFLVVDCTSKDFARVL 130 (223)
Q Consensus 99 li~GdA~e-vL~~-L~~fDfVFIDa~K~~Y~~~f 130 (223)
.+.....+ .+.. +..||+|+.=.+.......+
T Consensus 209 ~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~l 242 (376)
T PRK08762 209 AVQERVTSDNVEALLQDVDVVVDGADNFPTRYLL 242 (376)
T ss_pred EEeccCChHHHHHHHhCCCEEEECCCCHHHHHHH
Confidence 44433221 2222 35799776444543333333
No 486
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=72.47 E-value=8 Score=34.47 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=61.0
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC--CCCccEEEEe
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE--LKGVDFLVVD 120 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~--L~~fDfVFID 120 (223)
+++|+=||+|- .++.+..+ +. .+..+|+|+...+..+.|+... ++.+|..++... ...+|+++.+
T Consensus 2 ~v~dLFsG~Gg--~~~gl~~~----G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGG--FRLGLEKA----GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcch--HHHHHHHc----CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeC
Confidence 58999999885 55555543 23 4788999999998888888543 445666665543 3579999987
Q ss_pred C--------C--C-----c--ccHHHHHHhccCCCceEEEEeCCC
Q 027409 121 C--------T--S-----K--DFARVLRFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 121 a--------~--K-----~--~Y~~~f~~~~~l~~GgvIV~DNvl 148 (223)
- . + . .+.+|++.+...+|- +++..||-
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~ 113 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVK 113 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCc
Confidence 3 1 1 1 234555555555554 77888984
No 487
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=72.40 E-value=14 Score=32.50 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=44.4
Q ss_pred cCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhcc-CCCceEEE
Q 027409 65 ARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARF-SNKGAVLA 143 (223)
Q Consensus 65 ~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~-l~~GgvIV 143 (223)
....+.+|+.+|++++..+.|++. |+. .-..-+ .+.+. .+|+|++=.--+...++++.+.+ +++|++|+
T Consensus 7 ~~g~~~~v~g~d~~~~~~~~a~~~-----g~~-~~~~~~-~~~~~---~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 7 KAGPDVEVYGYDRDPETLEAALEL-----GII-DEASTD-IEAVE---DADLVVLAVPVSAIEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HTTTTSEEEEE-SSHHHHHHHHHT-----TSS-SEEESH-HHHGG---CCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEE
T ss_pred hCCCCeEEEEEeCCHHHHHHHHHC-----CCe-eeccCC-HhHhc---CCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEE
Confidence 344568999999999988777632 443 222222 44444 57999999888888899987766 57776554
No 488
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=72.16 E-value=42 Score=29.56 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=56.6
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---C
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---K 112 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~ 112 (223)
......+||=.|++.+++..++.+|.+. +.+++.+..++++.+.++ +. |.. +....-+..+.+.++ .
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~----~~-g~~~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAM---GLRVIAIDVGDEKLELAK----EL-GADAFVDFKKSDDVEAVKELTGGG 233 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHH----Hc-CCcEEEcCCCccHHHHHHHHhcCC
Confidence 3445678888888765544665666543 568999999988766553 34 543 333222333434443 3
Q ss_pred CccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 113 GVDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
.+|.+|-++....... +.++.++++|.++.
T Consensus 234 ~vd~vl~~~~~~~~~~--~~~~~l~~~g~~v~ 263 (341)
T cd08297 234 GAHAVVVTAVSAAAYE--QALDYLRPGGTLVC 263 (341)
T ss_pred CCCEEEEcCCchHHHH--HHHHHhhcCCEEEE
Confidence 6998886665433221 23455566677663
No 489
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=72.08 E-value=13 Score=27.37 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=12.8
Q ss_pred ccEEEEeCCCcccHHHH
Q 027409 114 VDFLVVDCTSKDFARVL 130 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f 130 (223)
||+|+||+....-....
T Consensus 40 ~d~viiD~p~~~~~~~~ 56 (104)
T cd02042 40 YDYIIIDTPPSLGLLTR 56 (104)
T ss_pred CCEEEEeCcCCCCHHHH
Confidence 99999999776554444
No 490
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=71.98 E-value=20 Score=30.75 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=52.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
-++||=||.| . ++...+......+++||-|+.+.. ...++ +.+. | .|+++.++-.. ..+..+|+||+-.
T Consensus 9 gk~vlVvGgG--~--va~rk~~~Ll~~ga~VtVvsp~~~--~~l~~-l~~~-~-~i~~~~~~~~~--~dl~~~~lVi~at 77 (205)
T TIGR01470 9 GRAVLVVGGG--D--VALRKARLLLKAGAQLRVIAEELE--SELTL-LAEQ-G-GITWLARCFDA--DILEGAFLVIAAT 77 (205)
T ss_pred CCeEEEECcC--H--HHHHHHHHHHHCCCEEEEEcCCCC--HHHHH-HHHc-C-CEEEEeCCCCH--HHhCCcEEEEECC
Confidence 4799999885 3 444444444456788888877654 22222 3344 4 47888877542 2246799999876
Q ss_pred CCc-ccHHHHHHhccCCCceEEE--EeCC
Q 027409 122 TSK-DFARVLRFARFSNKGAVLA--FKNA 147 (223)
Q Consensus 122 ~K~-~Y~~~f~~~~~l~~GgvIV--~DNv 147 (223)
+-. .-...+..++. -|+.| +|+.
T Consensus 78 ~d~~ln~~i~~~a~~---~~ilvn~~d~~ 103 (205)
T TIGR01470 78 DDEELNRRVAHAARA---RGVPVNVVDDP 103 (205)
T ss_pred CCHHHHHHHHHHHHH---cCCEEEECCCc
Confidence 533 33344444432 25555 4543
No 491
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=71.89 E-value=64 Score=29.22 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVFI 119 (223)
.-.++|-+|++ +.+..++.+|.+ .+.+++.+..++++.+.+. ++. |....+...+. +.+.++ ..+|.||
T Consensus 180 ~g~~vlV~G~G-~vG~~av~~Ak~---~G~~vi~~~~~~~~~~~~~---~~~-Ga~~~i~~~~~-~~~~~~~~~~D~vi- 249 (357)
T PLN02514 180 SGLRGGILGLG-GVGHMGVKIAKA---MGHHVTVISSSDKKREEAL---EHL-GADDYLVSSDA-AEMQEAADSLDYII- 249 (357)
T ss_pred CCCeEEEEccc-HHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHH---Hhc-CCcEEecCCCh-HHHHHhcCCCcEEE-
Confidence 34678877753 444455555543 3567888888877654443 234 65411112222 223333 4689765
Q ss_pred eCCCcccHHHHH-HhccCCCceEEEE
Q 027409 120 DCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|+--. ...++ .+..+++||.++.
T Consensus 250 d~~g~--~~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 250 DTVPV--FHPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred ECCCc--hHHHHHHHHHhccCCEEEE
Confidence 66431 22343 4455677776664
No 492
>PRK08328 hypothetical protein; Provisional
Probab=71.61 E-value=20 Score=31.15 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=45.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc--------------------hHHHHHHHHHHhhcCce--EE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE--------------------RSRLAYVKAMYDVVGWV--SE 98 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~--------------------e~~~~Ar~~~~~a~G~~--I~ 98 (223)
+.++|+=||+| |. +|.++...+... =|+|+-+|.|. .+.+.|++.+++. +-. |+
T Consensus 26 ~~~~VlIiG~G-Gl-Gs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~ 101 (231)
T PRK08328 26 KKAKVAVVGVG-GL-GSPVAYYLAAAG-VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIE 101 (231)
T ss_pred hCCcEEEECCC-HH-HHHHHHHHHHcC-CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEE
Confidence 45679999998 43 466555554432 27888888552 2455556666665 333 65
Q ss_pred EEecchHH-HhcC-CCCccEEEEeCCC
Q 027409 99 VIVRQAEE-VMGE-LKGVDFLVVDCTS 123 (223)
Q Consensus 99 li~GdA~e-vL~~-L~~fDfVFIDa~K 123 (223)
...+...+ -+.+ ++++|+||.=.+.
T Consensus 102 ~~~~~~~~~~~~~~l~~~D~Vid~~d~ 128 (231)
T PRK08328 102 TFVGRLSEENIDEVLKGVDVIVDCLDN 128 (231)
T ss_pred EEeccCCHHHHHHHHhcCCEEEECCCC
Confidence 55554321 2222 3579977643344
No 493
>PRK08507 prephenate dehydrogenase; Validated
Probab=71.53 E-value=27 Score=30.74 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=53.5
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCCC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCTS 123 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~K 123 (223)
+|.=||+ |..+++++.+.......-+|+-++++++..+.++ +. |.. +.. .+..+ +. ..|+||+=.-.
T Consensus 2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~-g~~-~~~-~~~~~-~~---~aD~Vilavp~ 68 (275)
T PRK08507 2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----EL-GLV-DEI-VSFEE-LK---KCDVIFLAIPV 68 (275)
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HC-CCC-ccc-CCHHH-Hh---cCCEEEEeCcH
Confidence 4666776 4556666665443222237888999988766553 34 542 111 23333 22 38999998887
Q ss_pred cccHHHHHHhccCCCceEEE
Q 027409 124 KDFARVLRFARFSNKGAVLA 143 (223)
Q Consensus 124 ~~Y~~~f~~~~~l~~GgvIV 143 (223)
....++++.+.++++|.+|+
T Consensus 69 ~~~~~~~~~l~~l~~~~iv~ 88 (275)
T PRK08507 69 DAIIEILPKLLDIKENTTII 88 (275)
T ss_pred HHHHHHHHHHhccCCCCEEE
Confidence 77888887664477777555
No 494
>PRK06720 hypothetical protein; Provisional
Probab=71.49 E-value=32 Score=28.38 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=47.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH---H---H----hcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE---E---V----MGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~---e---v----L~~ 110 (223)
..+.+|=.|.+.| ++.+++...+ ..+.+|+.++++++..+.+.+.+... |..+.++..|.. + . +..
T Consensus 15 ~gk~~lVTGa~~G-IG~aia~~l~--~~G~~V~l~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 15 AGKVAIVTGGGIG-IGRNTALLLA--KQGAKVIVTDIDQESGQATVEEITNL-GGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred CCCEEEEecCCCh-HHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678888887766 3455554433 34678999999988777666666655 544444444431 1 1 222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++..|.++..|.
T Consensus 91 ~G~iDilVnnAG 102 (169)
T PRK06720 91 FSRIDMLFQNAG 102 (169)
T ss_pred cCCCCEEEECCC
Confidence 345677776664
No 495
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=71.48 E-value=31 Score=30.64 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=49.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~---- 110 (223)
..|+||=.|.+.| ++..++...+ ..+.+|+.+.++++..+.+.+.+... +..++++..|..+ .+.+
T Consensus 5 ~~k~vlVTGas~g-IG~~~a~~L~--~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 5 AKGTVIITGASSG-VGLYAAKALA--KRGWHVIMACRNLKKAEAAAQELGIP-PDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCEEEEEcCCCh-HHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHhhcc-CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 4578898888766 4555554443 34678999999988877776666533 3336666666421 1111
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
..+.|.++.-|.
T Consensus 81 ~~~iD~li~nAg 92 (322)
T PRK07453 81 GKPLDALVCNAA 92 (322)
T ss_pred CCCccEEEECCc
Confidence 135899988765
No 496
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=71.32 E-value=29 Score=29.95 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=49.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
...-++||-.|.+.+.+..++.++ ...+.+++.++.+++..+.+++ . |.. +.....+..+.+.++ ..
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~---~~~g~~v~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIA---KLFGATVIATAGSEDKLERAKE----L-GADYVIDYRKEDFVREVRELTGKRG 235 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH---HHcCCEEEEEeCCHHHHHHHHH----c-CCCeEEecCChHHHHHHHHHhCCCC
Confidence 345578888887655422333333 3346788888988887666533 3 443 333322333333332 26
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEE
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLA 143 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV 143 (223)
+|.++ |+... ..++ .++.++++|-++
T Consensus 236 ~d~~i-~~~g~---~~~~~~~~~l~~~G~~v 262 (342)
T cd08266 236 VDVVV-EHVGA---ATWEKSLKSLARGGRLV 262 (342)
T ss_pred CcEEE-ECCcH---HHHHHHHHHhhcCCEEE
Confidence 99876 65432 2233 334555555544
No 497
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=71.20 E-value=37 Score=29.65 Aligned_cols=92 Identities=14% Similarity=0.025 Sum_probs=50.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
.-.+||=.|...+.+..++.+|.+ -+.+++.++.++++.+.++ +. |.. +....-+..+.+..+ ..+|
T Consensus 140 ~g~~vlI~g~~g~ig~~~~~lak~---~G~~v~~~~~~~~~~~~~~----~~-g~~~~~~~~~~~~~~~~~~~~~~~~~d 211 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKA---LGAKLIGTVGSAQKAQRAK----KA-GAWQVINYREENIVERVKEITGGKKVR 211 (327)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHH----HC-CCCEEEcCCCCcHHHHHHHHcCCCCeE
Confidence 345666666443433345555544 3678999998888766553 34 653 332222333444443 2699
Q ss_pred EEEEeCCCcccHHHHHHhccCCCceEEE
Q 027409 116 FLVVDCTSKDFARVLRFARFSNKGAVLA 143 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~~~~l~~GgvIV 143 (223)
.+| |+.-. ....+.++.++++|.+|
T Consensus 212 ~vl-~~~~~--~~~~~~~~~l~~~g~~v 236 (327)
T PRK10754 212 VVY-DSVGK--DTWEASLDCLQRRGLMV 236 (327)
T ss_pred EEE-ECCcH--HHHHHHHHHhccCCEEE
Confidence 655 87543 22233556667777666
No 498
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=71.10 E-value=48 Score=25.89 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=44.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
.+.++|+=||++ + .+.+++.+.+... ..+|+-++++++..+...+.+... +. ....-|..+. ++..|+|++
T Consensus 17 ~~~~~i~iiG~G-~-~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~-~~--~~~~~~~~~~---~~~~Dvvi~ 87 (155)
T cd01065 17 LKGKKVLILGAG-G-AARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL-GI--AIAYLDLEEL---LAEADLIIN 87 (155)
T ss_pred CCCCEEEEECCc-H-HHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc-cc--ceeecchhhc---cccCCEEEe
Confidence 357899999985 3 4455444433221 246888899988766655554432 21 1222233332 357899988
Q ss_pred eCCCcc
Q 027409 120 DCTSKD 125 (223)
Q Consensus 120 Da~K~~ 125 (223)
=.-...
T Consensus 88 ~~~~~~ 93 (155)
T cd01065 88 TTPVGM 93 (155)
T ss_pred CcCCCC
Confidence 764443
No 499
>PRK08618 ornithine cyclodeaminase; Validated
Probab=71.10 E-value=82 Score=28.65 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL 108 (223)
++.+-.-+++-..+++++=|||| |. +.+...+.+....-.+|.-.++++++.+.-.+.+++.++..+.. ..|..+.+
T Consensus 114 ~sala~~~la~~~~~~v~iiGaG-~~-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~ 190 (325)
T PRK08618 114 LSGVATKYLAREDAKTLCLIGTG-GQ-AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYV-VNSADEAI 190 (325)
T ss_pred HHHHHHHHhcCCCCcEEEEECCc-HH-HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEE-eCCHHHHH
Confidence 33333333444578999999998 33 23333232222223578888999988777666665432554332 46666666
Q ss_pred cCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeCCC
Q 027409 109 GELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 109 ~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNvl 148 (223)
. ..|+|+.=....+ .+|+ ..+++|..|++=-..
T Consensus 191 ~---~aDiVi~aT~s~~--p~i~--~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 E---EADIIVTVTNAKT--PVFS--EKLKKGVHINAVGSF 223 (325)
T ss_pred h---cCCEEEEccCCCC--cchH--HhcCCCcEEEecCCC
Confidence 4 5898886554332 3444 555788877554333
No 500
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=71.04 E-value=39 Score=28.69 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=49.8
Q ss_pred eEEEEc-cCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh-h--cCceEEEEecchHHHhcCCCCccEEEE
Q 027409 44 LIVEAW-THGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD-V--VGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 44 ~ILEIG-T~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~-a--~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
+|.=|| || ..+++|+...+ ..+-+|+-.+++++..+...+.+.. . .|..+++...+..+.+. ..|+||+
T Consensus 2 kI~IIGG~G--~mG~ala~~L~--~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~---~aDvVil 74 (219)
T TIGR01915 2 KIAVLGGTG--DQGKGLALRLA--KAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK---RADVVIL 74 (219)
T ss_pred EEEEEcCCC--HHHHHHHHHHH--hCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh---cCCEEEE
Confidence 466676 54 44456555443 2345788889998877665443322 1 03223344344444443 6899999
Q ss_pred eCCCcccHHHHHHhcc
Q 027409 120 DCTSKDFARVLRFARF 135 (223)
Q Consensus 120 Da~K~~Y~~~f~~~~~ 135 (223)
=....+....++.+..
T Consensus 75 avp~~~~~~~l~~l~~ 90 (219)
T TIGR01915 75 AVPWDHVLKTLESLRD 90 (219)
T ss_pred ECCHHHHHHHHHHHHH
Confidence 8877777777776643
Done!