BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027411
         (223 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A
           Resolution
          Length = 190

 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 80/84 (95%)

Query: 77  AYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVS 136
           AYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD+ SN+S
Sbjct: 5   AYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLS 64

Query: 137 VIITPTDKKSITDYGSPEEFLSKV 160
           V++ PTDKKSITD+GSPE+FLS+V
Sbjct: 65  VLVQPTDKKSITDFGSPEDFLSQV 88


>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving
           Complex Of Photosystem Ii From Higher Plants
 pdb|1V2B|B Chain B, Crystal Structure Of Psbp Protein In The Oxygen-Evolving
           Complex Of Photosystem Ii From Higher Plants
          Length = 177

 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 68/75 (90%)

Query: 86  GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK 145
           GKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKK
Sbjct: 1   GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60

Query: 146 SITDYGSPEEFLSKV 160
           SITD+GSPE+FLS+V
Sbjct: 61  SITDFGSPEQFLSQV 75


>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
           Cellulolyticum
 pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
           Cellulolyticium In Complex With Cellobiose
          Length = 441

 Score = 30.8 bits (68), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 179 RWTTCWENKPIPAKLRLRVVSTLMLWQ-----QLTSWRLQ 213
           +WT CW++  +PA LRL  ++   +++         W+ Q
Sbjct: 251 KWTMCWDDMYVPAALRLAQITGKQIYKDAIEFNFNYWKTQ 290


>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp
          Length = 165

 Score = 30.4 bits (67), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 100 DGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVII-TPTDKKSITDYGSPEE 155
           DG++   P  W    + E P  V+ + D  ++  NVSV++ T    KS+ + GSPEE
Sbjct: 16  DGYEFLYPRGW-VQVQVEDPVDVV-FHDIIETTENVSVVVNTVASTKSLEELGSPEE 70


>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed
           With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa
 pdb|3B70|A Chain A, Crystal Structure Of Aspergillus Terreus Trans-Acting
           Lovastatin Polyketide Enoyl Reductase (Lovc) With Bound
           Nadp
          Length = 371

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 136 SVIITPTDKKSITDYGSPEEFLSKVYCGSFIAV-TIIIHLWINFR 179
           +V I P+D K    + +P  FL   Y G+ +AV + + H+ +  R
Sbjct: 45  AVAINPSDTKMRGQFATPWAFLGTDYAGTVVAVGSDVTHIQVGDR 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.130    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,959,686
Number of Sequences: 62578
Number of extensions: 277563
Number of successful extensions: 491
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 7
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)