Query 027411
Match_columns 223
No_of_seqs 134 out of 159
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00042 photosystem II oxygen 100.0 4.3E-57 9.3E-62 401.6 13.4 181 1-186 1-211 (260)
2 PLN00059 PsbP domain-containin 100.0 1E-29 2.2E-34 228.3 10.9 143 26-185 56-222 (286)
3 PLN00067 PsbP domain-containin 99.9 6.2E-25 1.4E-29 196.3 11.3 132 51-185 42-218 (263)
4 PF01789 PsbP: PsbP; InterPro 99.9 5.2E-24 1.1E-28 175.4 6.4 111 73-186 2-129 (175)
5 PLN00066 PsbP domain-containin 99.8 5.7E-20 1.2E-24 164.5 12.6 128 49-180 42-215 (262)
6 PLN03152 hypothetical protein; 99.1 1.4E-10 3.1E-15 103.2 6.5 132 51-183 30-197 (241)
7 PF05757 PsbQ: Oxygen evolving 75.7 0.88 1.9E-05 40.2 0.0 33 31-67 12-44 (202)
8 PF10518 TAT_signal: TAT (twin 63.1 7.6 0.00016 23.9 2.2 17 52-68 2-18 (26)
9 PLN00058 photosystem II reacti 50.0 19 0.00041 29.3 3.1 31 50-81 47-77 (103)
10 PF08006 DUF1700: Protein of u 39.2 14 0.00031 30.6 0.9 20 143-162 43-62 (181)
11 PF12318 FAD-SLDH: Membrane bo 35.9 28 0.00061 29.5 2.2 8 52-59 2-9 (168)
12 PF07174 FAP: Fibronectin-atta 31.8 65 0.0014 30.5 4.0 30 98-127 115-145 (297)
13 PF10916 DUF2712: Protein of u 26.1 1.7E+02 0.0038 25.2 5.3 46 99-150 34-81 (146)
14 TIGR02811 formate_TAT formate 25.6 67 0.0015 23.7 2.5 13 51-63 8-20 (66)
15 PF07123 PsbW: Photosystem II 25.2 83 0.0018 26.9 3.2 10 34-43 43-52 (138)
16 PF12712 DUF3805: Domain of un 24.9 95 0.0021 26.9 3.6 43 94-141 4-47 (153)
17 PF10246 MRP-S35: Mitochondria 24.8 47 0.001 27.1 1.6 70 143-221 12-90 (104)
18 COG5614 Bacteriophage head-tai 23.5 43 0.00094 27.6 1.2 50 143-199 27-81 (109)
19 PRK10882 hydrogenase 2 protein 20.9 1.2E+02 0.0025 28.6 3.6 13 53-65 2-14 (328)
20 COG3211 PhoX Predicted phospha 20.1 1.1E+02 0.0024 31.7 3.4 14 51-64 20-33 (616)
No 1
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=4.3e-57 Score=401.61 Aligned_cols=181 Identities=66% Similarity=0.979 Sum_probs=159.2
Q ss_pred CcchhhhhcccccCCCccccc---ccccccCCCCCceeeeecccccccccCCccchhHHHHHHHHHHHhhhcCCCccccc
Q 027411 1 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAA 77 (223)
Q Consensus 1 ma~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~Cra~k~~~~~~~~~~vsRR~aL~~l~gaAa~~s~v~pA~AA 77 (223)
||||+|||||++++++....+ ++++.+...++++++|++|++. .+.++||.+|++++|+++++++++|++||
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~srr~~l~~~~ga~a~~~~~~pa~aa 75 (260)
T PLN00042 1 MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQEED-----NSAVSRRAALALLAGAAAAGAKVSPANAA 75 (260)
T ss_pred CcchhhhhhcccccchhhhcccccccccccCCCCCcceeeeccccc-----cccccHHHHHHHHHHHHHhhcccCchhhh
Confidence 999999999999955433211 4578899999999999999772 35689999999999999999999999999
Q ss_pred ccccccccCCCCCCCCccccccCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCCCcccCCCHHHHH
Q 027411 78 YGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFL 157 (223)
Q Consensus 78 yae~AnvFg~pk~~~gF~~Y~~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt~kkSI~DlGsPEEv~ 157 (223)
|||+|||||+||+++||++|++|||+|+||+||||++|++++|+|++|||+|+++|||+|+|+|++|++|+|||+||||+
T Consensus 76 y~~~anvfg~~k~~~gF~~y~~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l 155 (260)
T PLN00042 76 YGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFL 155 (260)
T ss_pred hcchhhccCCCCCCCCCeEeeCCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred HHh----ccceeeeE-----------------------EEEEEEEEEEEEeeeecc
Q 027411 158 SKV----YCGSFIAV-----------------------TIIIHLWINFRWTTCWEN 186 (223)
Q Consensus 158 ~~L----~~g~~~a~-----------------------~~~~~~~~~f~~~~~~~~ 186 (223)
+++ ++..+..+ .++|++||+||+.++-.|
T Consensus 156 ~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad 211 (260)
T PLN00042 156 SKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTAD 211 (260)
T ss_pred HHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEEEEecCC
Confidence 554 33223221 178999999999998654
No 2
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=99.96 E-value=1e-29 Score=228.30 Aligned_cols=143 Identities=19% Similarity=0.256 Sum_probs=110.9
Q ss_pred ccCCCCCceeeeecccccccccCCccchhHHHHHHHHH-HHhhhcCCCcccccccccccccCCCCCCCCccccccCCeeE
Q 027411 26 HVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIG-AAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKL 104 (223)
Q Consensus 26 ~~~~~~~~~v~Cra~k~~~~~~~~~~vsRR~aL~~l~g-aAa~~s~v~pA~AAyae~AnvFg~pk~~~gF~~Y~~DGYsF 104 (223)
..++-+|..+.|..|.. ...+++||++|+..+. +..+.+.++ ...|++ .|+++..|+| +.|||+|
T Consensus 56 ~~~~~~~~~~~~~~~~~-----~~~~~~rr~~~~~~l~~~~~~~s~~~-~~~a~a-------~~~~l~~y~D-~~DGY~F 121 (286)
T PLN00059 56 SAKPDSPVAINCLTDAK-----QVCAVGRRKSMMMGLLMSGLIVSEAN-LPTAFA-------SIPVFREYID-TFDGYSF 121 (286)
T ss_pred ccCCCCCeeeecccchh-----hhhhhhhhhhhHHHHHHHHHHHHhhc-Cchhhc-------CCcccceeEc-CCCCeEE
Confidence 34556667788998832 1458999999764442 333333332 224444 4567888888 8999999
Q ss_pred ecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCC---CCCcccCCCHHHHHHHhccceeee--------------
Q 027411 105 SIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTD---KKSITDYGSPEEFLSKVYCGSFIA-------------- 167 (223)
Q Consensus 105 lyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt~---kkSI~DlGsPEEv~~~L~~g~~~a-------------- 167 (223)
+||+|| +||+..|+|++|||+|+.+|||||+|+|+. +++|+|||+|+||+++|....+.+
T Consensus 122 lYP~GW---i~V~~~G~DVvFrD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeL 198 (286)
T PLN00059 122 KYPQNW---IQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANI 198 (286)
T ss_pred eCCCCC---eEeccCCCceEEeccCccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEE
Confidence 999999 999999999999999999999999999874 899999999999999996544332
Q ss_pred --EE----EEEEEEEEEEEeeeec
Q 027411 168 --VT----IIIHLWINFRWTTCWE 185 (223)
Q Consensus 168 --~~----~~~~~~~~f~~~~~~~ 185 (223)
.. .|||+||+||++.+-.
T Consensus 199 VsA~~Re~~DGktYY~lEY~Vks~ 222 (286)
T PLN00059 199 LSTSSRVADDGKLYYQVEVNIKSY 222 (286)
T ss_pred EEeeeEEccCCcEEEEEEEEEEcC
Confidence 11 3799999999998864
No 3
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=99.92 E-value=6.2e-25 Score=196.32 Aligned_cols=132 Identities=19% Similarity=0.301 Sum_probs=99.9
Q ss_pred cchhHHHHHHHHHHHhhhcCCCcccccccc-cccccCCC-CCCCCccccc-------------cCCeeEecCCCCCCCce
Q 027411 51 AVSRRLALTVLIGAAAVGSKVSPADAAYGE-SANVFGKP-KTNTDFLPYN-------------GDGFKLSIPSKWNPSKE 115 (223)
Q Consensus 51 ~vsRR~aL~~l~gaAa~~s~v~pA~AAyae-~AnvFg~p-k~~~gF~~Y~-------------~DGYsFlyPsgWnpskE 115 (223)
.+.||+.|.|++.+..++-.-.| .+...| +.+.|.+| ....||..|. ..||+|+||+||+++++
T Consensus 42 ~~~rr~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~V 120 (263)
T PLN00067 42 VIHRRELLLGLALAPLILIAPEP-PAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRV 120 (263)
T ss_pred hhHHHHHHhhhhhhhhhhccCCc-hhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCccc
Confidence 57899999888765444444333 333344 47788876 5678898876 67999999999966544
Q ss_pred e------------eeCCceEEeeeCCCCCCceEEEEecC------CCCCcccCCCHHHHHHHhccceee---------eE
Q 027411 116 R------------EFPGQVLRYEDNFDSNSNVSVIITPT------DKKSITDYGSPEEFLSKVYCGSFI---------AV 168 (223)
Q Consensus 116 V------------~~~G~dv~FeD~~d~~eNVSV~Ispt------~kkSI~DlGsPEEv~~~L~~g~~~---------a~ 168 (223)
- +++|+|++|||++ ++||+|+|+|+ ++++|+|||+||||+++|+..... ..
T Consensus 121 s~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~eLLeA 198 (263)
T PLN00067 121 ANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDELLET 198 (263)
T ss_pred cccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcceEEe
Confidence 3 2345999999955 67999999997 669999999999999999665443 11
Q ss_pred ---EEEEEEEEEEEEeeeec
Q 027411 169 ---TIIIHLWINFRWTTCWE 185 (223)
Q Consensus 169 ---~~~~~~~~~f~~~~~~~ 185 (223)
.++||+||+||+.|.-.
T Consensus 199 s~re~dGktYY~~E~~tp~a 218 (263)
T PLN00067 199 SVEKIGDQTYYKYVLETPFA 218 (263)
T ss_pred eeEeeCCeEEEEEEEEecCC
Confidence 18999999999987643
No 4
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=99.89 E-value=5.2e-24 Score=175.44 Aligned_cols=111 Identities=33% Similarity=0.566 Sum_probs=80.9
Q ss_pred cccccccccccccCCCCCCCCcccc--ccCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCC-Cccc
Q 027411 73 PADAAYGESANVFGKPKTNTDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK-SITD 149 (223)
Q Consensus 73 pA~AAyae~AnvFg~pk~~~gF~~Y--~~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt~kk-SI~D 149 (223)
++.++++..+|+++.+++..+|++| ..|||+|+||+|| +|++++|+|++|+|+++..+||+|+|+|+.++ +|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW---~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~ 78 (175)
T PF01789_consen 2 AALAALLSSANVACAAEASTGFQPYTDSDDGYSFLYPSGW---EEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLED 78 (175)
T ss_dssp --------------STT--SSEEEEEECTTTEEEEEETTE---EEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGG
T ss_pred ceeEEeeccchhhhcccCCCCceEEEcCCCCEEEECCCCC---eecCCCCeEEEEECcccccceEEEEEEecCCcCchhh
Confidence 3445666667777777778889998 6999999999999 99999999999999999999999999999666 9999
Q ss_pred CCCHHHHHHHhccce-----------eeeE---EEEEEEEEEEEEeeeecc
Q 027411 150 YGSPEEFLSKVYCGS-----------FIAV---TIIIHLWINFRWTTCWEN 186 (223)
Q Consensus 150 lGsPEEv~~~L~~g~-----------~~a~---~~~~~~~~~f~~~~~~~~ 186 (223)
||+||||+++|..+. .+.. +++||.||+||++..=.+
T Consensus 79 lGs~~~va~~l~~~~~~~~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~ 129 (175)
T PF01789_consen 79 LGSPEEVAERLLNGELASPGSGREAELISASEREVDGKTYYEYEYTVQSPN 129 (175)
T ss_dssp G-SHHHHHHHHHHHCCCHCTSSEEEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred cCCHHHHHHHHhhhhcccccCCcceEEEEeeeeecCCccEEEEEEEeccCC
Confidence 999999999996432 2211 267999999999987655
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=99.83 E-value=5.7e-20 Score=164.55 Aligned_cols=128 Identities=23% Similarity=0.364 Sum_probs=94.2
Q ss_pred CccchhHHHHHHHHHHHhh--hcCCCccccc-cccccc-c--cCCCCCCCCccccc---------------cCCeeEecC
Q 027411 49 GSAVSRRLALTVLIGAAAV--GSKVSPADAA-YGESAN-V--FGKPKTNTDFLPYN---------------GDGFKLSIP 107 (223)
Q Consensus 49 ~~~vsRR~aL~~l~gaAa~--~s~v~pA~AA-yae~An-v--Fg~pk~~~gF~~Y~---------------~DGYsFlyP 107 (223)
...++||.+|+.++.++.+ ++..+++.|+ ||-.|+ | |..| ...||..|. ...|+|+||
T Consensus 42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~-~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP 120 (262)
T PLN00066 42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEP-DENGWRTYRRPEGKSGGHGVGWSEITPYSFKVP 120 (262)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCc-cccceEEEecCccccCcCCCCccccCCeEEECC
Confidence 3478999999876655333 3333344444 775542 2 1222 235666655 478999999
Q ss_pred CCCCCCceeeeC-----CceEEeeeCCCCCCceEEEEecC--------CCCCcccCCCHHHHHHHhcc---------cee
Q 027411 108 SKWNPSKEREFP-----GQVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVYC---------GSF 165 (223)
Q Consensus 108 sgWnpskEV~~~-----G~dv~FeD~~d~~eNVSV~Ispt--------~kkSI~DlGsPEEv~~~L~~---------g~~ 165 (223)
+|| +|+.+. |.++.|++..+..+||+|+|+|+ ++++|+|||+||||+++|+. +..
T Consensus 121 ~GW---~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eL 197 (262)
T PLN00066 121 QGW---EEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKV 197 (262)
T ss_pred CCC---eEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccce
Confidence 999 999887 66677777779999999999997 79999999999999999974 333
Q ss_pred eeE---EEEEEEEEEEEE
Q 027411 166 IAV---TIIIHLWINFRW 180 (223)
Q Consensus 166 ~a~---~~~~~~~~~f~~ 180 (223)
+.. ..+||+||+||+
T Consensus 198 l~a~~re~dGktYY~~E~ 215 (262)
T PLN00066 198 LSMEVAEHSGRTYYQFEL 215 (262)
T ss_pred eEeeeeecCCcEEEEEEE
Confidence 332 378999999999
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.10 E-value=1.4e-10 Score=103.16 Aligned_cols=132 Identities=21% Similarity=0.346 Sum_probs=82.9
Q ss_pred cchhHHHHHHHHHH-HhhhcCCCccccccccccc----ccCCCCCCCCccccccCCeeEecCCCCCCCcee-eeC-C---
Q 027411 51 AVSRRLALTVLIGA-AAVGSKVSPADAAYGESAN----VFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKER-EFP-G--- 120 (223)
Q Consensus 51 ~vsRR~aL~~l~ga-Aa~~s~v~pA~AAyae~An----vFg~pk~~~gF~~Y~~DGYsFlyPsgWnpskEV-~~~-G--- 120 (223)
..+||+.+.-.+.+ +..+..-.|...++++..+ +-+.-.|.+..-.|-+|||+.-||..+...-|- ++. |
T Consensus 30 ~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp~f~di~e~~~~~~g~~~ 109 (241)
T PLN03152 30 GASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPPSFEDIMEPEDYNAGLSL 109 (241)
T ss_pred cccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCCChhhhcChhhcccccce
Confidence 34566655332221 1111223455566666532 222223445555566999999999999332222 111 1
Q ss_pred ---------ceEEeeeCCCCCCceEEEEecC--------CCCCcccCCCHHHHHHHhccce-------ee--eEEEEEEE
Q 027411 121 ---------QVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVYCGS-------FI--AVTIIIHL 174 (223)
Q Consensus 121 ---------~dv~FeD~~d~~eNVSV~Ispt--------~kkSI~DlGsPEEv~~~L~~g~-------~~--a~~~~~~~ 174 (223)
-..|| +--|.+|||||+|+|+ ++|+|+|||+|+||++.+.-+. -+ .--.+||+
T Consensus 110 yg~~akp~~~~aRf-~s~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~vP~g~~~~saR~iel~~E~dGKt 188 (241)
T PLN03152 110 YGDKAKPRTFAARF-ASPDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFVPGGATLYSARTIKVKEEEGIRT 188 (241)
T ss_pred ecCCCCCcceeeee-cCCCCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhCCCcccccccceeeeeeecCCce
Confidence 12233 2347799999999996 7999999999999998887553 12 12378999
Q ss_pred EEEEEEeee
Q 027411 175 WINFRWTTC 183 (223)
Q Consensus 175 ~~~f~~~~~ 183 (223)
||.+||.+.
T Consensus 189 YY~lEy~v~ 197 (241)
T PLN03152 189 YYFYEFGRD 197 (241)
T ss_pred eEEEEEEeC
Confidence 999999985
No 7
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=75.67 E-value=0.88 Score=40.23 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCceeeeecccccccccCCccchhHHHHHHHHHHHhh
Q 027411 31 KPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAV 67 (223)
Q Consensus 31 ~~~~v~Cra~k~~~~~~~~~~vsRR~aL~~l~gaAa~ 67 (223)
+...++||++... .....+||.+|.++++++++
T Consensus 12 ~r~~~~vra~~~~----~~~~~~RRa~l~~l~a~~~~ 44 (202)
T PF05757_consen 12 RRAGVVVRASQSP----AQQQTSRRAVLGSLLAAALA 44 (202)
T ss_dssp -------------------------------------
T ss_pred ccccceeccccCc----ccccccHHHHHHHHHHHHHH
Confidence 4455668888621 13357899998866655443
No 8
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=63.11 E-value=7.6 Score=23.87 Aligned_cols=17 Identities=41% Similarity=0.264 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHhhh
Q 027411 52 VSRRLALTVLIGAAAVG 68 (223)
Q Consensus 52 vsRR~aL~~l~gaAa~~ 68 (223)
.+||+.|-+.+++++..
T Consensus 2 ~sRR~fLk~~~a~~a~~ 18 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAA 18 (26)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 57999998777655443
No 9
>PLN00058 photosystem II reaction center subunit T; Provisional
Probab=49.99 E-value=19 Score=29.26 Aligned_cols=31 Identities=35% Similarity=0.148 Sum_probs=16.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCccccccccc
Q 027411 50 SAVSRRLALTVLIGAAAVGSKVSPADAAYGES 81 (223)
Q Consensus 50 ~~vsRR~aL~~l~gaAa~~s~v~pA~AAyae~ 81 (223)
+..+||.++...+ ++++.+....+.|.+.|+
T Consensus 47 ~~~gRR~~mfaaa-Aaav~s~a~~A~a~~~ep 77 (103)
T PLN00058 47 STTMRRDLMFTAA-AAAVCSLAKVAMAEEEEP 77 (103)
T ss_pred chhhHHHHHHHHH-HHHHHhhhHHHhhcccCC
Confidence 3568898886554 344444444443333343
No 10
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=39.24 E-value=14 Score=30.61 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=16.3
Q ss_pred CCCCcccCCCHHHHHHHhcc
Q 027411 143 DKKSITDYGSPEEFLSKVYC 162 (223)
Q Consensus 143 ~kkSI~DlGsPEEv~~~L~~ 162 (223)
+.+=++|||+|+|+++++-.
T Consensus 43 Eeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 43 EEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 45567899999999999853
No 11
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=35.87 E-value=28 Score=29.54 Aligned_cols=8 Identities=50% Similarity=0.609 Sum_probs=6.2
Q ss_pred chhHHHHH
Q 027411 52 VSRRLALT 59 (223)
Q Consensus 52 vsRR~aL~ 59 (223)
.+||.+|+
T Consensus 2 ~sRR~~L~ 9 (168)
T PF12318_consen 2 LSRRRLLA 9 (168)
T ss_pred CcHHHHHH
Confidence 57999993
No 12
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=31.79 E-value=65 Score=30.53 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=22.0
Q ss_pred ccCCeeEecCCCCCCCceeeeC-CceEEeee
Q 027411 98 NGDGFKLSIPSKWNPSKEREFP-GQVLRYED 127 (223)
Q Consensus 98 ~~DGYsFlyPsgWnpskEV~~~-G~dv~FeD 127 (223)
...||+|++|.||..|..-+.. |+.+.=|-
T Consensus 115 ~~gGFS~vvP~GW~~Sda~~L~yG~alls~~ 145 (297)
T PF07174_consen 115 AAGGFSYVVPAGWVESDASHLDYGSALLSKQ 145 (297)
T ss_pred cccceEEeccCCccccccceeecceeeeccC
Confidence 4889999999999766555554 66665543
No 13
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=26.07 E-value=1.7e+02 Score=25.19 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=33.0
Q ss_pred cCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecC--CCCCcccC
Q 027411 99 GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPT--DKKSITDY 150 (223)
Q Consensus 99 ~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt--~kkSI~Dl 150 (223)
.=||.|.+|..- .. .+-+-|||..-...++--|.+... .|.+|.-|
T Consensus 34 ~i~F~F~i~~~~---an---sys~~ryRqTt~t~n~WKV~l~~StEGkGTi~tf 81 (146)
T PF10916_consen 34 NIPFSFTIKPNQ---AN---SYSGSRYRQTTSTNNPWKVNLTYSTEGKGTIYTF 81 (146)
T ss_pred CCceEEEeCCcc---cc---cccCceeeccCCCCCccEEeccccccccceEEEE
Confidence 457899999877 22 577889998888887766666633 66666543
No 14
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=25.63 E-value=67 Score=23.71 Aligned_cols=13 Identities=38% Similarity=0.036 Sum_probs=9.5
Q ss_pred cchhHHHHHHHHH
Q 027411 51 AVSRRLALTVLIG 63 (223)
Q Consensus 51 ~vsRR~aL~~l~g 63 (223)
.++||..|.++++
T Consensus 8 ~~sRR~Flk~lg~ 20 (66)
T TIGR02811 8 DPSRRDLLKGLGV 20 (66)
T ss_pred CccHHHHHHHHHH
Confidence 5789999875544
No 15
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=25.18 E-value=83 Score=26.88 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=7.6
Q ss_pred eeeeeccccc
Q 027411 34 QIVCRAQKQA 43 (223)
Q Consensus 34 ~v~Cra~k~~ 43 (223)
.+.|.+++..
T Consensus 43 ~v~cs~~~~~ 52 (138)
T PF07123_consen 43 RVRCSAEKKP 52 (138)
T ss_pred ceEEEeccCc
Confidence 5889888764
No 16
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=24.95 E-value=95 Score=26.89 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=22.9
Q ss_pred ccccccCCeeEecCCCCCCCceeeeCCce-EEeeeCCCCCCceEEEEec
Q 027411 94 FLPYNGDGFKLSIPSKWNPSKEREFPGQV-LRYEDNFDSNSNVSVIITP 141 (223)
Q Consensus 94 F~~Y~~DGYsFlyPsgWnpskEV~~~G~d-v~FeD~~d~~eNVSV~Isp 141 (223)
|++ .+.=|++.||.+| -|.+ +|.+ ..|=|+-.-+-|..+..-.
T Consensus 4 fiS-pg~WFS~~YP~~W---~EfE-D~E~sflFYnp~~WTGNfRISayk 47 (153)
T PF12712_consen 4 FIS-PGAWFSMEYPADW---NEFE-DGEGSFLFYNPDQWTGNFRISAYK 47 (153)
T ss_dssp EE--GGG-EEEEE-TT----EEE----TTEEEEE-SSS---EEEEEEEE
T ss_pred ccC-CCceEEEecCCCc---chhc-cCCcceEEEChHHhcCceEEEEEe
Confidence 555 5667999999999 8876 5544 3466777788898876655
No 17
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=24.81 E-value=47 Score=27.14 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=45.5
Q ss_pred CCCCcccCCCHHHHHHHhccceeeeEEEEEEEEEEEEEe---e------eecccccccceehhhhHHHHHHHHhhheeec
Q 027411 143 DKKSITDYGSPEEFLSKVYCGSFIAVTIIIHLWINFRWT---T------CWENKPIPAKLRLRVVSTLMLWQQLTSWRLQ 213 (223)
Q Consensus 143 ~kkSI~DlGsPEEv~~~L~~g~~~a~~~~~~~~~~f~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (223)
++..+-++|+|+ .+++.|+...+--| +|||.|-|- . ..|.-..-.+.|+|+-.. .|++--|-
T Consensus 12 R~S~fi~lG~~~---gk~V~G~I~hvv~d-dLYIDfG~KFhcVc~rp~~~~~~y~~G~rV~lrLkdl-----ELs~~FLG 82 (104)
T PF10246_consen 12 RNSPFIQLGDPE---GKIVIGKIFHVVDD-DLYIDFGGKFHCVCKRPAVNGEKYVRGSRVRLRLKDL-----ELSAHFLG 82 (104)
T ss_pred cCChhhhcCCcc---CCEEEEEEEEEecC-ceEEEeCCceeEEEecccccccccccCCEEEEEECCH-----hhhhhhcc
Confidence 556677888874 45666766655444 899999873 1 223334456777777554 45666677
Q ss_pred cCCccccc
Q 027411 214 SDHHTTSC 221 (223)
Q Consensus 214 ~~~~~~~~ 221 (223)
.++|+|-|
T Consensus 83 ~~~d~Tll 90 (104)
T PF10246_consen 83 ASKDTTLL 90 (104)
T ss_pred CCCCcEEE
Confidence 88888765
No 18
>COG5614 Bacteriophage head-tail adaptor [General function prediction only]
Probab=23.53 E-value=43 Score=27.56 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=42.4
Q ss_pred CCCCcccCCCHHHHHHHhccceeeeEE-----EEEEEEEEEEEeeeecccccccceehhhhH
Q 027411 143 DKKSITDYGSPEEFLSKVYCGSFIAVT-----IIIHLWINFRWTTCWENKPIPAKLRLRVVS 199 (223)
Q Consensus 143 ~kkSI~DlGsPEEv~~~L~~g~~~a~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 199 (223)
.-++..|+|+|=....-+....|++.+ .+.++||.|+ +.|-|..|+++-+
T Consensus 27 ~~e~w~d~~t~WAai~~~s~kE~~aAgaE~~~~t~riwIRyr-------~DItA~~Ri~~~~ 81 (109)
T COG5614 27 MTEEWVDCGTLWAAIRGRSGKEFMAAGAEMAQATIRIWIRYR-------RDITAASRLHVLS 81 (109)
T ss_pred hhHHHhhhccHhhhhcCcchhHHHhcchhhceeEEEEEEEee-------ecccceeEEEEcC
Confidence 346788999999999999999999887 8899999998 6788888888765
No 19
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=20.85 E-value=1.2e+02 Score=28.61 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHH
Q 027411 53 SRRLALTVLIGAA 65 (223)
Q Consensus 53 sRR~aL~~l~gaA 65 (223)
+||..|.++++++
T Consensus 2 ~RR~fl~~~~~~~ 14 (328)
T PRK10882 2 NRRNFLKAASAGA 14 (328)
T ss_pred CHHHHHHHHHHHH
Confidence 5999998765443
No 20
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=20.09 E-value=1.1e+02 Score=31.71 Aligned_cols=14 Identities=43% Similarity=0.292 Sum_probs=10.2
Q ss_pred cchhHHHHHHHHHH
Q 027411 51 AVSRRLALTVLIGA 64 (223)
Q Consensus 51 ~vsRR~aL~~l~ga 64 (223)
..+||..|.+.+++
T Consensus 20 ~lsRR~fl~gsaa~ 33 (616)
T COG3211 20 ALSRRKFLKGSAAA 33 (616)
T ss_pred hhhhhhhhhhhHHH
Confidence 68999999754433
Done!