Query 027411
Match_columns 223
No_of_seqs 134 out of 159
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 99.9 1E-26 3.6E-31 193.5 6.5 100 86-185 1-127 (177)
2 2lnj_A SLL1418 protein, putati 99.7 1.1E-21 3.8E-26 160.1 0.0 90 92-184 12-122 (170)
3 2xb3_A PSBP protein; photosynt 99.8 2.9E-20 1E-24 149.7 5.7 91 92-185 6-114 (165)
4 1tu1_A Hypothetical protein PA 37.5 1.4E+02 0.0047 22.9 7.6 54 95-154 4-60 (148)
5 3hlz_A Uncharacterized protein 21.9 95 0.0032 27.8 4.4 46 92-141 5-50 (269)
6 3u7d_B Protein HEG homolog 1; 21.5 30 0.001 21.0 0.8 11 103-113 4-14 (26)
7 2ad6_B Methanol dehydrogenase 17.1 36 0.0012 24.9 0.5 12 182-193 11-23 (69)
8 1ji7_A ETS-related protein TEL 15.8 36 0.0012 25.2 0.3 19 200-218 64-82 (89)
9 1w6s_B Methanol dehydrogenase 15.6 41 0.0014 24.9 0.5 12 182-193 11-23 (74)
10 2qas_A SSPB, hypothetical prot 15.5 38 0.0013 28.2 0.4 25 171-197 44-68 (157)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.93 E-value=1e-26 Score=193.53 Aligned_cols=100 Identities=61% Similarity=0.930 Sum_probs=81.4
Q ss_pred CCCCCCCCccccccCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCCCcccCCCHHHHHHHhccce-
Q 027411 86 GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVYCGS- 164 (223)
Q Consensus 86 g~pk~~~gF~~Y~~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt~kkSI~DlGsPEEv~~~L~~g~- 164 (223)
|+||..+||++|.+|||+|+||++|+++++++++|+|++|+|+++.++||+|+|+|+++++|+|||+||||++++++..
T Consensus 1 ~~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~ 80 (177)
T 1v2b_A 1 GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLG 80 (177)
T ss_dssp ------CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-
T ss_pred CCCCCCCCceEEecCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999766654332
Q ss_pred ---eee-----------------------EEEEEEEEEEEEEeeeec
Q 027411 165 ---FIA-----------------------VTIIIHLWINFRWTTCWE 185 (223)
Q Consensus 165 ---~~a-----------------------~~~~~~~~~~f~~~~~~~ 185 (223)
+.. .+++|++||.||+.++-.
T Consensus 81 ~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~ 127 (177)
T 1v2b_A 81 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTA 127 (177)
T ss_dssp -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred HHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecC
Confidence 221 127899999999998743
No 2
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.70 E-value=1.1e-21 Score=160.14 Aligned_cols=90 Identities=19% Similarity=0.327 Sum_probs=78.5
Q ss_pred CCccccc--cCCeeEecCCCCCCCceeeeC----CceEEeeeCCCCCCceEEEEecCCC-CCcccCCCHHHHHHHhccce
Q 027411 92 TDFLPYN--GDGFKLSIPSKWNPSKEREFP----GQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVYCGS 164 (223)
Q Consensus 92 ~gF~~Y~--~DGYsFlyPsgWnpskEV~~~----G~dv~FeD~~d~~eNVSV~Ispt~k-kSI~DlGsPEEv~~~L~~g~ 164 (223)
.||++|+ .|||+|+||++| ++++++ |+|++|+|+++.++||+|+|+|+.+ ++|+|||+||||+++|....
T Consensus 12 ~g~~~y~d~~~gy~f~~P~gW---~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~ 88 (170)
T 2lnj_A 12 ASLQRYSDTKDGYEFLYPNGW---IGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV 88 (170)
Confidence 3455555 999999999999 777888 9999999999999999999999977 99999999999999998764
Q ss_pred eeeE--------------EEEEEEEEEEEEeeee
Q 027411 165 FIAV--------------TIIIHLWINFRWTTCW 184 (223)
Q Consensus 165 ~~a~--------------~~~~~~~~~f~~~~~~ 184 (223)
+..+ +++|+.||.||+++.=
T Consensus 89 ~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~ 122 (170)
T 2lnj_A 89 NDASQGDRQAELINAEARDEDGQVYYTLEYRVLV 122 (170)
Confidence 4422 3789999999999765
No 3
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.80 E-value=2.9e-20 Score=149.66 Aligned_cols=91 Identities=22% Similarity=0.391 Sum_probs=76.6
Q ss_pred CCccccc--cCCeeEecCCCCCCCceeeeC-CceEEeeeCCCCCCceEEEEecCCC-CCcccCCCHHHHHHHhccce---
Q 027411 92 TDFLPYN--GDGFKLSIPSKWNPSKEREFP-GQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVYCGS--- 164 (223)
Q Consensus 92 ~gF~~Y~--~DGYsFlyPsgWnpskEV~~~-G~dv~FeD~~d~~eNVSV~Ispt~k-kSI~DlGsPEEv~~~L~~g~--- 164 (223)
.||..|. .|||+|+||++| ++++++ |+|++|+|+++..+||+|+|+|+.+ ++|+|||+||||+++|....
T Consensus 6 ~g~~~~~D~~~gysf~~P~~W---~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~ 82 (165)
T 2xb3_A 6 SGLQAYVDSYDGYEFLYPRGW---VQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAP 82 (165)
T ss_dssp CCEEEEEETTTTEEEEEETTE---EEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSC
T ss_pred CCceEEEcCCCCEEEEcCCCC---eEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcC
Confidence 4566666 899999999999 889998 9999999999999999999999966 99999999999998886532
Q ss_pred --------eeeEE---EEEEEEEEEEEeeeec
Q 027411 165 --------FIAVT---IIIHLWINFRWTTCWE 185 (223)
Q Consensus 165 --------~~a~~---~~~~~~~~f~~~~~~~ 185 (223)
.+-.. ++|+.||.|||++.=.
T Consensus 83 ~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~ 114 (165)
T 2xb3_A 83 SESGRSSALIAATSQKADDKTYYILEYAVTLP 114 (165)
T ss_dssp TTSSCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred CCCCcceEEEEeeeeecCCceEEEEEEEEecC
Confidence 22222 5789999999996543
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=37.50 E-value=1.4e+02 Score=22.94 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=31.0
Q ss_pred cccccCCeeEecCCCCCCCceeeeCCceEEeeeCCCCC--CceEEEEecC-CCCCcccCCCHH
Q 027411 95 LPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSN--SNVSVIITPT-DKKSITDYGSPE 154 (223)
Q Consensus 95 ~~Y~~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~--eNVSV~Ispt-~kkSI~DlGsPE 154 (223)
..|...+++|.+|.+| ++. ...|.+-..-.+. -|+.|...+. +..+++++=.-+
T Consensus 4 ~~y~~~Egsl~lP~gw---~D~---t~nv~~~~~~~~~g~~~lvIsR~~~~~~~~l~~~~~~q 60 (148)
T 1tu1_A 4 TLYRLHEADLEIPDAW---QDQ---SINIFKLPASGPAREASFVISRDASQGDAPFADYVARQ 60 (148)
T ss_dssp EEEECSSEEEEEETTS---EEC---CBEEEEECCBTTBCCEEEEEEEECCCTTSCHHHHHHHH
T ss_pred ceEEECCEEEeCCCCc---Eee---eEEEEEcCCCCCCCceEEEEEeccCCCCCCHHHHHHHH
Confidence 3578899999999999 642 2344443322111 2444444444 556666664444
No 5
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.88 E-value=95 Score=27.77 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCccccccCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEec
Q 027411 92 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITP 141 (223)
Q Consensus 92 ~gF~~Y~~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Isp 141 (223)
+-|++ .+-=|++.||++| -|++=.----.|-++-.=+-|..+.--.
T Consensus 5 kk~IS-PgaWfs~~yP~~W---~EfEd~E~sflFynp~~WtGNfRISayk 50 (269)
T 3hlz_A 5 KKFIS-PGAWFSMNYPSDW---NEFEDGEGSFLFYNPDVWTGNFRISAFK 50 (269)
T ss_dssp EEEEC-GGGCEEEEECTTC---EEECCCTTEEEEECSSSCCCEEEEEEEE
T ss_pred ceeec-CCceeEEecCCCc---ccccCCCCceeeeChhhcccceEEEecc
Confidence 34777 7888999999999 7754322333456777778887766554
No 6
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=21.55 E-value=30 Score=20.97 Aligned_cols=11 Identities=36% Similarity=0.757 Sum_probs=9.3
Q ss_pred eEecCCCCCCC
Q 027411 103 KLSIPSKWNPS 113 (223)
Q Consensus 103 sFlyPsgWnps 113 (223)
+-+||..||||
T Consensus 4 sciypgqynps 14 (26)
T 3u7d_B 4 SCIFPGQYNPS 14 (26)
T ss_pred cccccCccCcc
Confidence 45799999998
No 7
>2ad6_B Methanol dehydrogenase subunit 2; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: a.137.2.1 PDB: 1g72_B* 2ad7_B* 2ad8_B* 4aah_B*
Probab=17.06 E-value=36 Score=24.91 Aligned_cols=12 Identities=67% Similarity=1.589 Sum_probs=9.1
Q ss_pred eeecccc-cccce
Q 027411 182 TCWENKP-IPAKL 193 (223)
Q Consensus 182 ~~~~~~~-~~~~~ 193 (223)
-|||.|| .|+|+
T Consensus 11 ~CWEpkPGyP~ki 23 (69)
T 2ad6_B 11 NCWENKPGYPEKI 23 (69)
T ss_dssp BCCCCCTTSCSCC
T ss_pred CccCCCCCCchhc
Confidence 4999998 56665
No 8
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=15.83 E-value=36 Score=25.22 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=12.7
Q ss_pred HHHHHHHhhheeeccCCcc
Q 027411 200 TLMLWQQLTSWRLQSDHHT 218 (223)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ 218 (223)
.-+||..|..|+-+.|||.
T Consensus 64 GdiL~~hL~~l~~~~~~~~ 82 (89)
T 1ji7_A 64 GDELYELLQHILKQRDHHH 82 (89)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHhCccccc
Confidence 5689999999999999874
No 9
>1w6s_B Methanol dehydrogenase subunit 2; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: a.137.2.1 PDB: 1h4j_B* 1h4i_B* 2d0v_B*
Probab=15.59 E-value=41 Score=24.90 Aligned_cols=12 Identities=58% Similarity=1.506 Sum_probs=9.0
Q ss_pred eeecccc-cccce
Q 027411 182 TCWENKP-IPAKL 193 (223)
Q Consensus 182 ~~~~~~~-~~~~~ 193 (223)
-|||.|| .|+|+
T Consensus 11 ~CWEpkPGyP~ki 23 (74)
T 1w6s_B 11 NCWEPKPGFPEKI 23 (74)
T ss_dssp BCCCCCTTCCSCC
T ss_pred CccCCCCCCchhc
Confidence 4999998 56665
No 10
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A
Probab=15.46 E-value=38 Score=28.20 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEEEEEEeeeecccccccceehhh
Q 027411 171 IIHLWINFRWTTCWENKPIPAKLRLRV 197 (223)
Q Consensus 171 ~~~~~~~f~~~~~~~~~~~~~~~~~~~ 197 (223)
+-|.||+|+ |.+..--||..||-|-
T Consensus 44 ~HHFyITF~--T~~pGV~i~d~L~~~Y 68 (157)
T 2qas_A 44 PHHLYITFK--TKAAGVSGPQDLLSKY 68 (157)
T ss_dssp TCCEEEEEE--TTSTTCBCCHHHHHHS
T ss_pred ccEEEEEEe--cCCCCccCCHHHHhhC
Confidence 558999875 8999999999998774
Done!