BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027412
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
+ L +A+ K+G D+A + K LE P++ Y+ L + Y+K + A + Y++
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN-LGNAYYKQGDYDEAIEYYQKA 61
Query: 124 CENNISPNIV-SYSILIDGLCKRGLMEEALYAFHCALDNHLLP-DVVTYAILIRGYCKAG 181
E + P ++ L + K+G +EA+ + AL+ L P + L Y K G
Sbjct: 62 LE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQG 117
Query: 182 RPTEAMQLYDSMLR 195
EA++ Y L
Sbjct: 118 DYDEAIEYYQKALE 131
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 3 IKECHLDAALKLFGQLTDRGLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
K+ D A++ + + + L+P + + Y DEA++ ++K ++L P
Sbjct: 46 YKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK--ALELDPR 101
Query: 62 SI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
S + L +A+ K+G D+A + K LE P++
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
+ L +A+ K+G D+A + K LE P N + L + Y+K + A + Y++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 124 CENNISPNIV-SYSILIDGLCKRGLMEEALYAFHCALD 160
E + PN ++ L + K+G +EA+ + AL+
Sbjct: 70 LE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 3 IKECHLDAALKLFGQLTDRGLEPDII-TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
K+ D A++ + + + L+P+ + + Y DEA++ ++K ++L PN
Sbjct: 20 YKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK--ALELDPN 75
Query: 62 SI-TFTILIDAFCKEGRMDDATMMFSKMLEKGP 93
+ + L +A+ K+G D+A + K LE P
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
+ L +A+ K+G D+A + K LE P N + L + Y+K + A + Y++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 124 CENNISPNIV-SYSILIDGLCKRGLMEEALYAFHCALDNHLLPD 166
E + PN ++ L + K+G +EA+ + AL+ L P+
Sbjct: 70 LE--LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LYPN 109
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 YCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLE 90
Y DEA++ ++K ++L PN+ + L +A+ K+G D+A + K LE
Sbjct: 53 YYKQGDYDEAIEYYQK--ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
+ L +A+ K+G D+A + K LE P N + L + Y+K + A + Y++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 124 CENNISPN 131
E + PN
Sbjct: 70 LE--LDPN 75
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 31.2 bits (69), Expect = 0.48, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
L +A+ K+G D+A + K LE P++ Y+ L + Y+K + A + Y++ E
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN-LGNAYYKQGDYDEAIEYYQKALE 65
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 44 DEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
DEA++ ++K ++L P S + L +A+ K+G D+A + K LE P++
Sbjct: 20 DEAIEYYQK--ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 70
>pdb|2ILR|A Chain A, Crystal Structure Of Human Fanconi Anemia Protein E C-
Terminal Domain
Length = 264
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 87 KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146
KM P A V+ +++ +K + F V + + E + +S+L++ LCK+G
Sbjct: 153 KMESLEPDAQVLMLGQILELPWKEET----FLVLQSLLERQVEMTPEKFSVLMEKLCKKG 208
Query: 147 L 147
L
Sbjct: 209 L 209
>pdb|1C5D|H Chain H, The Crystal Structure Of The Fab Fragment Of A Rat
Monoclonal Antibody Against The Main Immunogenic Region
Of The Human Muscle Acetylcholine Receptor
pdb|1C5D|B Chain B, The Crystal Structure Of The Fab Fragment Of A Rat
Monoclonal Antibody Against The Main Immunogenic Region
Of The Human Muscle Acetylcholine Receptor
Length = 215
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM-FSKM 88
YN+ + S+NR Q+F K+ +Q + +I F D + TM+ S
Sbjct: 59 YNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSA 118
Query: 89 LEKGPK------------ANVVTYSCLIDGYF 108
P ++ VT CL+ GYF
Sbjct: 119 QTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYF 150
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 116 AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEA 151
AFD+ ++M I P + SY + G C++G ++A
Sbjct: 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 95 ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR 145
A ++ S L+D + N+ + + + + +I+PN + IDGL K+
Sbjct: 35 AELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKK 85
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 66 TILIDAFCKEGRMDDATMMFSKMLEKGPK 94
+ L + + GR+D+A ++K LE+ PK
Sbjct: 155 SALAELYLSMGRLDEALAQYAKALEQAPK 183
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 135 YSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYA 171
Y+ ++ G ++G +E +Y D L PD+++YA
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,371,700
Number of Sequences: 62578
Number of extensions: 249029
Number of successful extensions: 945
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 26
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)