Query 027412
Match_columns 223
No_of_seqs 518 out of 1279
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 09:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9.3E-42 2E-46 274.6 26.5 214 3-216 483-698 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-41 2.9E-46 273.7 26.5 216 2-217 517-734 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.7E-38 5.9E-43 250.8 20.4 211 2-220 269-480 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.1E-38 8.9E-43 249.8 20.8 213 1-220 299-512 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.5E-36 7.5E-41 243.7 19.9 208 2-217 162-404 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.2E-35 2.6E-40 240.6 19.9 210 2-219 232-441 (857)
7 PRK11788 tetratricopeptide rep 99.9 8.1E-20 1.8E-24 137.0 23.3 207 2-214 117-327 (389)
8 PRK11788 tetratricopeptide rep 99.9 8.4E-20 1.8E-24 136.9 23.3 213 3-219 80-299 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 1E-17 2.2E-22 137.6 24.8 210 4-221 681-890 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 3E-17 6.5E-22 134.8 25.2 161 31-195 571-731 (899)
11 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-15 2.6E-20 120.6 24.6 210 4-219 343-559 (615)
12 KOG4626 O-linked N-acetylgluco 99.8 6.1E-16 1.3E-20 115.9 21.1 193 2-203 296-490 (966)
13 PRK15174 Vi polysaccharide exp 99.8 1.6E-15 3.5E-20 120.0 23.9 175 38-217 188-367 (656)
14 TIGR00990 3a0801s09 mitochondr 99.7 3.4E-15 7.4E-20 118.0 24.5 187 6-196 308-496 (615)
15 KOG1126 DNA-binding cell divis 99.7 9.4E-17 2E-21 120.4 14.7 211 2-218 363-607 (638)
16 PRK15174 Vi polysaccharide exp 99.7 6.2E-15 1.3E-19 116.7 25.8 191 2-196 187-381 (656)
17 TIGR02521 type_IV_pilW type IV 99.7 9.5E-15 2.1E-19 101.8 23.5 167 27-196 31-198 (234)
18 PRK12370 invasion protein regu 99.7 1.5E-14 3.3E-19 112.7 24.8 205 6-216 275-489 (553)
19 PF13429 TPR_15: Tetratricopep 99.7 2.7E-16 5.9E-21 112.7 13.6 210 4-221 56-267 (280)
20 TIGR02521 type_IV_pilW type IV 99.7 4E-14 8.6E-19 98.6 22.9 190 2-195 41-231 (234)
21 PF13429 TPR_15: Tetratricopep 99.7 1.9E-16 4.1E-21 113.5 11.0 186 4-194 89-275 (280)
22 KOG4626 O-linked N-acetylgluco 99.7 5.2E-15 1.1E-19 111.0 15.9 206 5-217 231-471 (966)
23 PRK09782 bacteriophage N4 rece 99.7 9.7E-14 2.1E-18 113.2 24.5 190 4-202 521-710 (987)
24 PRK11447 cellulose synthase su 99.7 9E-14 2E-18 116.8 24.8 196 2-203 279-529 (1157)
25 KOG1155 Anaphase-promoting com 99.7 9.8E-14 2.1E-18 100.7 20.6 189 4-196 274-495 (559)
26 PRK12370 invasion protein regu 99.7 2E-13 4.4E-18 106.5 23.8 186 5-196 317-502 (553)
27 PRK09782 bacteriophage N4 rece 99.7 1.8E-13 4E-18 111.6 23.8 205 5-219 489-694 (987)
28 PRK10747 putative protoheme IX 99.7 1.8E-13 3.8E-18 102.7 21.9 209 3-221 129-380 (398)
29 PRK11447 cellulose synthase su 99.6 3.3E-13 7.2E-18 113.5 24.5 189 3-196 472-700 (1157)
30 COG2956 Predicted N-acetylgluc 99.6 3.7E-13 8.1E-18 93.7 20.5 189 5-196 48-278 (389)
31 PRK10049 pgaA outer membrane p 99.6 8.5E-13 1.8E-17 106.7 24.4 205 3-212 248-470 (765)
32 COG2956 Predicted N-acetylgluc 99.6 4.7E-13 1E-17 93.2 18.9 178 39-218 47-265 (389)
33 KOG1155 Anaphase-promoting com 99.6 1.4E-12 3.1E-17 94.8 22.0 209 3-217 341-555 (559)
34 TIGR00540 hemY_coli hemY prote 99.6 5E-13 1.1E-17 100.7 20.8 123 96-221 262-389 (409)
35 COG3063 PilF Tfp pilus assembl 99.6 1.6E-12 3.4E-17 86.5 20.1 187 28-218 36-223 (250)
36 COG3063 PilF Tfp pilus assembl 99.6 3.6E-12 7.8E-17 84.9 21.2 201 2-208 45-246 (250)
37 KOG1126 DNA-binding cell divis 99.6 2.4E-13 5.1E-18 102.6 17.1 197 1-204 430-626 (638)
38 PF13041 PPR_2: PPR repeat fam 99.6 1.1E-14 2.3E-19 75.9 5.8 50 165-214 1-50 (50)
39 COG3071 HemY Uncharacterized e 99.5 4.1E-11 9E-16 85.7 24.2 213 5-221 97-380 (400)
40 PRK11189 lipoprotein NlpI; Pro 99.5 4E-11 8.8E-16 86.5 24.6 194 4-207 76-275 (296)
41 KOG4422 Uncharacterized conser 99.5 1.5E-12 3.2E-17 94.2 16.6 121 96-220 206-330 (625)
42 KOG1129 TPR repeat-containing 99.5 6.7E-13 1.5E-17 92.8 13.9 190 1-195 232-423 (478)
43 PF13041 PPR_2: PPR repeat fam 99.5 5.3E-14 1.2E-18 73.2 6.1 41 99-139 5-45 (50)
44 PRK14574 hmsH outer membrane p 99.5 2.6E-11 5.7E-16 97.4 22.9 202 2-207 302-522 (822)
45 TIGR00540 hemY_coli hemY prote 99.5 1.2E-10 2.5E-15 88.0 23.3 189 4-196 96-292 (409)
46 PRK10747 putative protoheme IX 99.5 9.5E-11 2.1E-15 88.1 22.2 205 4-219 96-345 (398)
47 PRK14574 hmsH outer membrane p 99.5 6.2E-11 1.4E-15 95.4 22.2 184 3-192 45-228 (822)
48 PRK10049 pgaA outer membrane p 99.5 1.6E-10 3.5E-15 93.7 24.9 110 4-117 61-170 (765)
49 KOG1173 Anaphase-promoting com 99.4 7.4E-11 1.6E-15 88.0 19.5 206 4-215 324-535 (611)
50 KOG2003 TPR repeat-containing 99.4 9.7E-11 2.1E-15 85.8 18.8 204 5-215 503-707 (840)
51 KOG1840 Kinesin light chain [C 99.4 5.7E-11 1.2E-15 90.0 17.7 219 2-220 209-468 (508)
52 COG3071 HemY Uncharacterized e 99.4 6E-10 1.3E-14 79.9 21.7 190 4-201 165-395 (400)
53 KOG2003 TPR repeat-containing 99.4 2E-10 4.3E-15 84.2 19.6 183 4-193 536-719 (840)
54 KOG4422 Uncharacterized conser 99.4 1.3E-10 2.8E-15 84.4 18.3 108 4-115 219-330 (625)
55 KOG1129 TPR repeat-containing 99.4 4.6E-11 1E-15 83.8 15.3 167 30-201 226-392 (478)
56 PRK11189 lipoprotein NlpI; Pro 99.4 1.3E-09 2.9E-14 78.7 21.7 154 2-163 108-267 (296)
57 TIGR03302 OM_YfiO outer membra 99.4 1E-09 2.2E-14 76.9 20.6 170 26-196 32-232 (235)
58 PRK10370 formate-dependent nit 99.4 1.1E-09 2.3E-14 74.2 19.8 161 34-211 23-186 (198)
59 KOG0547 Translocase of outer m 99.3 2.7E-10 5.8E-15 83.9 17.2 153 5-161 339-491 (606)
60 KOG1125 TPR repeat-containing 99.3 4.8E-10 1E-14 83.9 18.6 190 2-195 295-526 (579)
61 KOG2076 RNA polymerase III tra 99.3 2.1E-09 4.6E-14 84.3 22.5 116 5-123 152-267 (895)
62 KOG4318 Bicoid mRNA stability 99.3 4.4E-11 9.5E-16 93.5 13.0 197 13-216 11-285 (1088)
63 KOG1840 Kinesin light chain [C 99.3 9.8E-10 2.1E-14 83.4 18.8 211 2-212 251-501 (508)
64 KOG0547 Translocase of outer m 99.3 5.6E-10 1.2E-14 82.2 16.7 187 2-195 370-565 (606)
65 TIGR03302 OM_YfiO outer membra 99.3 2.1E-09 4.6E-14 75.3 18.2 160 2-162 43-233 (235)
66 PRK10370 formate-dependent nit 99.3 1.3E-09 2.8E-14 73.8 16.4 154 2-171 26-182 (198)
67 PRK15359 type III secretion sy 99.3 2.1E-09 4.6E-14 69.1 16.5 94 67-162 29-122 (144)
68 COG5010 TadD Flp pilus assembl 99.3 7.2E-09 1.6E-13 70.7 19.2 165 26-195 66-230 (257)
69 PRK15359 type III secretion sy 99.3 2E-09 4.3E-14 69.2 15.8 124 12-142 13-136 (144)
70 PLN02789 farnesyltranstransfer 99.2 2.2E-08 4.7E-13 72.7 22.2 207 3-215 48-268 (320)
71 KOG2002 TPR-containing nuclear 99.2 8.1E-09 1.8E-13 81.9 19.6 204 4-211 176-384 (1018)
72 TIGR02552 LcrH_SycD type III s 99.2 2.4E-09 5.3E-14 68.3 14.3 97 63-161 18-114 (135)
73 KOG1070 rRNA processing protei 99.2 1.1E-08 2.5E-13 83.9 20.4 195 3-202 1469-1669(1710)
74 PRK15179 Vi polysaccharide bio 99.2 1.4E-08 3.1E-13 80.6 20.6 145 24-172 83-227 (694)
75 PF12569 NARP1: NMDA receptor- 99.2 6E-08 1.3E-12 74.6 23.1 214 2-220 14-280 (517)
76 KOG2002 TPR-containing nuclear 99.2 3.1E-09 6.7E-14 84.2 16.3 188 6-196 544-745 (1018)
77 PF04733 Coatomer_E: Coatomer 99.2 3.5E-09 7.6E-14 75.8 15.4 151 34-195 109-264 (290)
78 KOG0495 HAT repeat protein [RN 99.2 3.5E-08 7.7E-13 75.6 20.9 203 4-213 596-798 (913)
79 cd05804 StaR_like StaR_like; a 99.2 6.3E-08 1.4E-12 72.1 22.3 188 5-196 19-215 (355)
80 PRK15179 Vi polysaccharide bio 99.2 3.8E-08 8.2E-13 78.3 21.9 135 59-196 83-217 (694)
81 KOG2076 RNA polymerase III tra 99.2 2E-08 4.4E-13 79.0 19.8 185 29-216 141-330 (895)
82 COG5010 TadD Flp pilus assembl 99.2 1.1E-08 2.3E-13 69.8 15.8 132 25-159 98-229 (257)
83 TIGR02552 LcrH_SycD type III s 99.1 1.3E-08 2.7E-13 65.0 15.2 96 98-195 18-113 (135)
84 KOG1173 Anaphase-promoting com 99.1 1.6E-08 3.4E-13 75.9 17.0 212 4-220 256-507 (611)
85 KOG1128 Uncharacterized conser 99.1 3.3E-09 7.2E-14 81.7 13.4 196 3-212 409-633 (777)
86 KOG0495 HAT repeat protein [RN 99.1 1E-07 2.2E-12 73.2 20.9 208 3-217 629-866 (913)
87 cd05804 StaR_like StaR_like; a 99.1 8E-08 1.7E-12 71.6 20.5 155 3-161 54-215 (355)
88 PF12569 NARP1: NMDA receptor- 99.1 1E-07 2.3E-12 73.3 21.1 181 11-196 130-334 (517)
89 PF04733 Coatomer_E: Coatomer 99.1 3.7E-09 8E-14 75.7 12.0 184 24-218 63-251 (290)
90 PLN02789 farnesyltranstransfer 99.1 3.9E-07 8.4E-12 66.3 21.6 180 29-214 39-229 (320)
91 KOG1128 Uncharacterized conser 99.0 1.3E-08 2.9E-13 78.5 13.4 163 22-197 393-583 (777)
92 KOG1174 Anaphase-promoting com 99.0 4E-07 8.8E-12 66.4 19.2 49 71-120 343-391 (564)
93 PF12854 PPR_1: PPR repeat 99.0 1E-09 2.2E-14 51.6 4.1 32 127-158 2-33 (34)
94 KOG3060 Uncharacterized conser 99.0 1.9E-06 4E-11 59.0 22.3 187 6-196 26-220 (289)
95 COG4783 Putative Zn-dependent 99.0 2.7E-07 5.8E-12 68.5 18.2 114 70-186 314-427 (484)
96 PF12854 PPR_1: PPR repeat 99.0 1.3E-09 2.9E-14 51.2 4.0 32 57-88 2-33 (34)
97 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 9E-08 1.9E-12 71.0 15.4 126 28-159 170-295 (395)
98 KOG1174 Anaphase-promoting com 99.0 6.5E-07 1.4E-11 65.4 19.1 193 4-204 312-506 (564)
99 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 2.3E-07 5.1E-12 68.9 17.0 125 64-194 171-295 (395)
100 KOG3081 Vesicle coat complex C 98.9 5.6E-07 1.2E-11 61.9 16.8 152 33-195 114-270 (299)
101 COG4783 Putative Zn-dependent 98.9 2.5E-06 5.3E-11 63.5 21.0 142 34-196 313-454 (484)
102 PF09976 TPR_21: Tetratricopep 98.9 4.3E-07 9.3E-12 58.6 15.3 116 40-157 24-143 (145)
103 PF09976 TPR_21: Tetratricopep 98.9 4.1E-07 8.8E-12 58.7 15.0 128 63-193 13-144 (145)
104 KOG4340 Uncharacterized conser 98.9 1.8E-07 3.8E-12 65.5 13.7 187 3-199 21-210 (459)
105 KOG1125 TPR repeat-containing 98.9 2.1E-07 4.6E-12 70.2 14.8 163 35-202 293-497 (579)
106 KOG0548 Molecular co-chaperone 98.9 1.6E-06 3.4E-11 65.2 18.3 204 4-214 236-471 (539)
107 KOG3060 Uncharacterized conser 98.8 3.8E-06 8.3E-11 57.5 18.4 156 4-163 64-222 (289)
108 KOG3081 Vesicle coat complex C 98.8 4.4E-06 9.4E-11 57.6 18.7 143 65-218 111-257 (299)
109 KOG1915 Cell cycle control pro 98.8 6.7E-06 1.4E-10 61.4 20.3 189 5-200 154-354 (677)
110 PRK14720 transcript cleavage f 98.8 2.3E-06 4.9E-11 69.6 19.5 130 64-212 118-267 (906)
111 cd00189 TPR Tetratricopeptide 98.8 3.3E-07 7.2E-12 54.1 11.7 88 69-158 7-94 (100)
112 PRK14720 transcript cleavage f 98.8 2.1E-06 4.6E-11 69.7 18.9 155 22-196 25-198 (906)
113 PRK15363 pathogenicity island 98.8 8.9E-07 1.9E-11 56.6 13.2 97 63-161 36-132 (157)
114 KOG4318 Bicoid mRNA stability 98.8 9.8E-08 2.1E-12 75.5 10.5 163 48-211 11-248 (1088)
115 KOG3785 Uncharacterized conser 98.8 1E-06 2.2E-11 63.3 14.5 195 2-205 295-497 (557)
116 KOG1915 Cell cycle control pro 98.8 1E-05 2.3E-10 60.4 20.0 186 5-196 86-273 (677)
117 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.3E-06 2.8E-11 54.2 13.5 95 67-161 7-105 (119)
118 PF12895 Apc3: Anaphase-promot 98.8 4.8E-08 1E-12 56.8 6.5 79 76-156 3-82 (84)
119 KOG1070 rRNA processing protei 98.8 7.8E-06 1.7E-10 68.1 20.8 200 13-218 1445-1650(1710)
120 PLN03088 SGT1, suppressor of 98.8 6.8E-07 1.5E-11 66.3 14.0 94 68-163 8-101 (356)
121 KOG1156 N-terminal acetyltrans 98.8 9.7E-06 2.1E-10 62.5 20.0 203 4-212 53-262 (700)
122 KOG0624 dsRNA-activated protei 98.7 1.3E-05 2.8E-10 57.5 19.2 195 2-203 48-257 (504)
123 cd00189 TPR Tetratricopeptide 98.7 5.4E-07 1.2E-11 53.2 11.1 96 99-196 2-97 (100)
124 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.3E-06 5E-11 53.1 13.7 98 29-126 4-105 (119)
125 CHL00033 ycf3 photosystem I as 98.7 1.2E-06 2.6E-11 58.1 12.8 63 29-91 37-101 (168)
126 PRK15363 pathogenicity island 98.7 1.6E-06 3.4E-11 55.5 12.5 98 27-126 35-132 (157)
127 PLN03088 SGT1, suppressor of 98.7 2.2E-06 4.7E-11 63.7 15.3 94 32-127 7-100 (356)
128 PRK10153 DNA-binding transcrip 98.7 6.9E-06 1.5E-10 63.8 18.5 145 58-207 333-491 (517)
129 CHL00033 ycf3 photosystem I as 98.7 1.5E-06 3.3E-11 57.6 13.2 94 62-156 35-137 (168)
130 KOG4162 Predicted calmodulin-b 98.7 1.7E-05 3.8E-10 62.3 20.0 116 100-219 653-771 (799)
131 KOG0553 TPR repeat-containing 98.7 6.3E-07 1.4E-11 62.7 11.2 86 73-160 92-177 (304)
132 PF12895 Apc3: Anaphase-promot 98.7 9.4E-08 2E-12 55.5 6.1 81 5-87 2-83 (84)
133 PRK02603 photosystem I assembl 98.7 7.2E-06 1.6E-10 54.6 15.5 84 64-148 37-122 (172)
134 PRK02603 photosystem I assembl 98.7 6.9E-06 1.5E-10 54.7 15.4 94 27-121 35-130 (172)
135 PF10037 MRP-S27: Mitochondria 98.7 1.3E-06 2.8E-11 65.4 12.9 119 61-179 65-185 (429)
136 PF05843 Suf: Suppressor of fo 98.7 2E-06 4.3E-11 61.8 13.5 131 28-161 2-136 (280)
137 KOG2376 Signal recognition par 98.6 2.9E-05 6.3E-10 59.4 19.6 189 2-197 22-254 (652)
138 PF10037 MRP-S27: Mitochondria 98.6 1.7E-06 3.8E-11 64.7 13.1 120 96-215 65-186 (429)
139 COG4235 Cytochrome c biogenesi 98.6 7.6E-06 1.6E-10 57.6 15.3 122 85-211 145-269 (287)
140 TIGR00756 PPR pentatricopeptid 98.6 8.1E-08 1.7E-12 45.6 3.8 33 169-201 2-34 (35)
141 KOG0553 TPR repeat-containing 98.6 3.7E-06 8.1E-11 58.9 13.1 101 108-212 92-192 (304)
142 PRK10866 outer membrane biogen 98.6 6.2E-05 1.3E-09 52.9 20.0 167 26-194 31-239 (243)
143 KOG0624 dsRNA-activated protei 98.6 3.6E-05 7.9E-10 55.3 17.5 159 37-201 165-339 (504)
144 PF13812 PPR_3: Pentatricopept 98.6 1.4E-07 2.9E-12 44.5 3.9 32 169-200 3-34 (34)
145 PRK10866 outer membrane biogen 98.6 3.7E-05 8.1E-10 54.0 17.6 157 3-159 43-239 (243)
146 KOG4162 Predicted calmodulin-b 98.6 0.00011 2.3E-09 58.1 21.2 79 9-88 461-539 (799)
147 KOG4340 Uncharacterized conser 98.6 6.4E-06 1.4E-10 58.0 13.2 143 71-216 153-324 (459)
148 PF08579 RPM2: Mitochondrial r 98.6 3.4E-06 7.3E-11 50.4 10.2 70 146-215 39-117 (120)
149 PF05843 Suf: Suppressor of fo 98.5 1.3E-05 2.8E-10 57.6 14.6 83 41-125 50-135 (280)
150 PF08579 RPM2: Mitochondrial r 98.5 4.9E-06 1.1E-10 49.7 10.2 79 101-179 29-116 (120)
151 KOG0548 Molecular co-chaperone 98.5 3.7E-05 8.1E-10 58.1 17.0 149 3-163 309-457 (539)
152 TIGR00756 PPR pentatricopeptid 98.5 2.7E-07 5.9E-12 43.7 4.1 31 100-130 3-33 (35)
153 KOG1127 TPR repeat-containing 98.5 1.4E-05 3.1E-10 64.6 15.3 185 7-195 473-658 (1238)
154 KOG2053 Mitochondrial inherita 98.5 0.00027 5.8E-09 56.8 21.9 190 3-197 20-256 (932)
155 PF13812 PPR_3: Pentatricopept 98.5 3.9E-07 8.4E-12 42.9 4.3 32 134-165 3-34 (34)
156 PRK10153 DNA-binding transcrip 98.5 8.2E-05 1.8E-09 58.0 18.7 140 22-164 332-485 (517)
157 PF14938 SNAP: Soluble NSF att 98.5 5.6E-05 1.2E-09 54.5 16.7 186 27-214 35-247 (282)
158 KOG1156 N-terminal acetyltrans 98.5 5.7E-05 1.2E-09 58.5 17.1 178 29-211 10-188 (700)
159 KOG3785 Uncharacterized conser 98.5 0.00015 3.2E-09 52.6 18.2 186 3-203 33-219 (557)
160 KOG1914 mRNA cleavage and poly 98.4 0.00019 4.1E-09 54.7 19.2 186 8-196 309-501 (656)
161 PRK04841 transcriptional regul 98.4 9.1E-05 2E-09 62.2 19.5 194 3-196 502-720 (903)
162 PRK04841 transcriptional regul 98.4 0.0002 4.3E-09 60.2 21.4 192 4-195 421-640 (903)
163 COG4235 Cytochrome c biogenesi 98.4 6.1E-05 1.3E-09 53.2 15.0 111 50-163 145-258 (287)
164 KOG2047 mRNA splicing factor [ 98.4 0.00048 1E-08 53.7 21.2 194 5-201 360-583 (835)
165 KOG2796 Uncharacterized conser 98.4 7.1E-05 1.5E-09 51.9 14.8 141 64-207 179-324 (366)
166 KOG2053 Mitochondrial inherita 98.4 0.00064 1.4E-08 54.8 22.4 117 38-160 20-138 (932)
167 KOG2796 Uncharacterized conser 98.4 0.00016 3.5E-09 50.2 16.3 136 29-165 179-319 (366)
168 PF13414 TPR_11: TPR repeat; P 98.4 4.7E-06 1E-10 46.3 7.7 62 63-125 4-66 (69)
169 KOG1127 TPR repeat-containing 98.4 2.7E-05 5.8E-10 63.1 14.1 184 7-193 507-697 (1238)
170 PF14938 SNAP: Soluble NSF att 98.4 6.6E-05 1.4E-09 54.2 15.2 188 3-193 46-260 (282)
171 PF13432 TPR_16: Tetratricopep 98.4 4E-06 8.7E-11 46.0 7.1 53 71-124 6-58 (65)
172 PF13414 TPR_11: TPR repeat; P 98.4 3.8E-06 8.3E-11 46.7 6.9 63 97-160 3-66 (69)
173 KOG2376 Signal recognition par 98.4 7.8E-05 1.7E-09 57.2 15.5 156 31-193 16-201 (652)
174 PF12688 TPR_5: Tetratrico pep 98.3 8.1E-05 1.8E-09 46.0 13.0 92 103-194 7-102 (120)
175 PF13432 TPR_16: Tetratricopep 98.3 1E-05 2.2E-10 44.4 7.9 61 33-94 3-63 (65)
176 PF14559 TPR_19: Tetratricopep 98.3 3.2E-06 7E-11 46.8 5.8 53 3-56 2-54 (68)
177 PF12688 TPR_5: Tetratrico pep 98.3 0.0002 4.4E-09 44.2 13.9 90 34-123 8-101 (120)
178 PF06239 ECSIT: Evolutionarily 98.3 2.9E-05 6.2E-10 52.3 10.6 49 96-144 46-99 (228)
179 PF14559 TPR_19: Tetratricopep 98.3 5.6E-06 1.2E-10 45.8 6.2 48 76-124 5-52 (68)
180 PF01535 PPR: PPR repeat; Int 98.2 1.5E-06 3.2E-11 39.9 3.0 28 134-161 2-29 (31)
181 PRK15331 chaperone protein Sic 98.2 0.00039 8.4E-09 45.0 15.5 91 68-160 43-133 (165)
182 PF13525 YfiO: Outer membrane 98.2 0.00045 9.8E-09 47.3 15.8 67 28-94 6-74 (203)
183 PF13525 YfiO: Outer membrane 98.2 0.00038 8.2E-09 47.7 15.1 166 2-186 15-197 (203)
184 KOG0985 Vesicle coat protein c 98.2 0.00025 5.5E-09 58.1 15.9 185 4-216 1060-1263(1666)
185 PF01535 PPR: PPR repeat; Int 98.2 3.1E-06 6.7E-11 38.8 3.5 29 169-197 2-30 (31)
186 PF03704 BTAD: Bacterial trans 98.2 0.00039 8.5E-09 44.9 14.0 57 101-158 66-122 (146)
187 KOG1914 mRNA cleavage and poly 98.1 0.0018 3.9E-08 49.6 18.9 167 43-211 309-481 (656)
188 PRK10803 tol-pal system protei 98.1 0.0002 4.4E-09 50.8 13.1 87 108-195 154-245 (263)
189 COG4700 Uncharacterized protei 98.1 0.00075 1.6E-08 44.6 17.3 127 59-187 86-213 (251)
190 PF06239 ECSIT: Evolutionarily 98.1 8E-05 1.7E-09 50.2 10.0 105 24-147 44-153 (228)
191 KOG2047 mRNA splicing factor [ 98.1 0.0026 5.7E-08 49.9 21.2 207 2-211 397-631 (835)
192 PF03704 BTAD: Bacterial trans 98.1 0.00077 1.7E-08 43.5 14.3 72 64-136 64-140 (146)
193 PRK15331 chaperone protein Sic 98.1 0.00073 1.6E-08 43.8 13.5 92 103-196 43-134 (165)
194 PF13371 TPR_9: Tetratricopept 98.0 4.8E-05 1E-09 42.7 7.2 55 106-161 4-58 (73)
195 PF13281 DUF4071: Domain of un 98.0 0.0024 5.2E-08 47.4 20.2 168 27-196 141-334 (374)
196 PRK10803 tol-pal system protei 98.0 0.00041 8.9E-09 49.3 12.9 99 64-162 145-247 (263)
197 PF13371 TPR_9: Tetratricopept 98.0 8.6E-05 1.9E-09 41.6 7.8 56 70-126 3-58 (73)
198 KOG3617 WD40 and TPR repeat-co 98.0 0.00086 1.9E-08 54.1 15.1 140 37-194 836-994 (1416)
199 KOG3617 WD40 and TPR repeat-co 98.0 0.00065 1.4E-08 54.7 14.0 175 2-195 738-940 (1416)
200 KOG3616 Selective LIM binding 97.9 0.00039 8.4E-09 55.3 12.0 104 4-120 744-847 (1636)
201 PF13424 TPR_12: Tetratricopep 97.8 0.00015 3.2E-09 41.3 6.7 60 64-123 7-72 (78)
202 PF10300 DUF3808: Protein of u 97.8 0.0081 1.8E-07 46.7 17.3 162 32-195 193-375 (468)
203 PF13424 TPR_12: Tetratricopep 97.8 0.00015 3.3E-09 41.2 6.2 62 98-159 6-73 (78)
204 KOG3616 Selective LIM binding 97.8 0.0023 5E-08 51.2 14.0 75 107-192 742-816 (1636)
205 KOG0543 FKBP-type peptidyl-pro 97.7 0.0017 3.6E-08 48.0 12.1 125 34-160 215-354 (397)
206 PF12921 ATP13: Mitochondrial 97.7 0.0017 3.7E-08 40.6 10.5 83 96-178 1-99 (126)
207 KOG0985 Vesicle coat protein c 97.7 0.0048 1E-07 51.1 15.0 100 6-119 1089-1188(1666)
208 KOG0543 FKBP-type peptidyl-pro 97.7 0.0023 4.9E-08 47.3 12.1 128 67-196 213-355 (397)
209 COG4105 ComL DNA uptake lipopr 97.7 0.0079 1.7E-07 42.0 20.9 174 27-203 35-238 (254)
210 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.0018 3.9E-08 48.9 11.7 65 61-126 74-141 (453)
211 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.0036 7.7E-08 47.4 13.2 99 25-127 73-175 (453)
212 PRK11906 transcriptional regul 97.6 0.016 3.5E-07 44.0 17.2 163 28-193 252-433 (458)
213 KOG2610 Uncharacterized conser 97.6 0.0056 1.2E-07 44.4 12.9 152 4-157 115-272 (491)
214 PF13512 TPR_18: Tetratricopep 97.6 0.0044 9.6E-08 39.3 10.9 60 68-127 16-77 (142)
215 PF12921 ATP13: Mitochondrial 97.6 0.0047 1E-07 38.7 10.9 84 62-145 2-101 (126)
216 COG4700 Uncharacterized protei 97.6 0.0095 2.1E-07 39.6 18.6 127 25-153 87-214 (251)
217 PF08631 SPO22: Meiosis protei 97.6 0.015 3.4E-07 41.9 21.6 164 3-168 4-193 (278)
218 PF04840 Vps16_C: Vps16, C-ter 97.5 0.0097 2.1E-07 43.7 13.9 108 65-192 180-287 (319)
219 KOG2610 Uncharacterized conser 97.5 0.01 2.3E-07 43.1 12.8 154 39-194 115-274 (491)
220 KOG0550 Molecular chaperone (D 97.4 0.011 2.3E-07 44.1 12.5 161 34-196 176-350 (486)
221 PF13428 TPR_14: Tetratricopep 97.4 0.00063 1.4E-08 33.9 4.7 36 65-101 4-39 (44)
222 KOG1130 Predicted G-alpha GTPa 97.4 0.0018 3.9E-08 48.2 8.1 49 2-51 27-79 (639)
223 PF04053 Coatomer_WDAD: Coatom 97.3 0.034 7.4E-07 42.9 15.0 152 5-192 274-427 (443)
224 COG1729 Uncharacterized protei 97.3 0.0095 2.1E-07 41.9 11.0 100 99-202 144-248 (262)
225 KOG1585 Protein required for f 97.3 0.026 5.7E-07 39.2 14.3 185 2-190 41-250 (308)
226 KOG3941 Intermediate in Toll s 97.3 0.0049 1.1E-07 43.7 9.3 31 186-216 142-172 (406)
227 KOG0550 Molecular chaperone (D 97.3 0.043 9.3E-07 41.1 15.4 173 2-178 179-368 (486)
228 PF13281 DUF4071: Domain of un 97.3 0.043 9.2E-07 41.1 17.7 159 2-162 151-335 (374)
229 PRK11906 transcriptional regul 97.3 0.051 1.1E-06 41.5 17.2 146 7-157 273-432 (458)
230 COG0457 NrfG FOG: TPR repeat [ 97.2 0.034 7.3E-07 38.2 22.3 89 71-160 139-230 (291)
231 COG3118 Thioredoxin domain-con 97.2 0.047 1E-06 39.1 15.0 155 33-191 140-296 (304)
232 COG4105 ComL DNA uptake lipopr 97.1 0.045 9.7E-07 38.4 18.5 157 3-160 45-232 (254)
233 PF13428 TPR_14: Tetratricopep 97.1 0.0031 6.6E-08 31.3 5.1 27 100-126 4-30 (44)
234 COG1729 Uncharacterized protei 97.1 0.021 4.7E-07 40.2 10.8 99 27-126 142-244 (262)
235 KOG4555 TPR repeat-containing 97.1 0.03 6.5E-07 35.0 11.6 94 69-163 50-146 (175)
236 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.078 1.7E-06 40.4 13.9 143 64-211 399-544 (660)
237 smart00299 CLH Clathrin heavy 97.1 0.034 7.4E-07 35.5 14.6 43 32-75 12-54 (140)
238 KOG4555 TPR repeat-containing 97.0 0.031 6.8E-07 34.9 10.0 93 104-197 50-145 (175)
239 COG3629 DnrI DNA-binding trans 97.0 0.018 3.8E-07 41.2 10.1 77 134-211 155-236 (280)
240 PF10602 RPN7: 26S proteasome 96.9 0.037 7.9E-07 37.0 10.1 97 63-159 37-140 (177)
241 KOG3941 Intermediate in Toll s 96.8 0.024 5.1E-07 40.4 9.3 87 60-146 65-172 (406)
242 PF13512 TPR_18: Tetratricopep 96.8 0.056 1.2E-06 34.4 12.6 86 27-112 10-97 (142)
243 KOG2041 WD40 repeat protein [G 96.8 0.03 6.5E-07 44.8 10.7 128 6-156 748-876 (1189)
244 PF10300 DUF3808: Protein of u 96.8 0.17 3.7E-06 39.6 18.7 117 5-124 246-374 (468)
245 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.16 3.5E-06 38.8 14.7 131 28-161 398-531 (660)
246 COG4649 Uncharacterized protei 96.8 0.076 1.7E-06 35.0 13.1 135 26-161 58-196 (221)
247 PF04840 Vps16_C: Vps16, C-ter 96.7 0.14 3.1E-06 37.8 16.3 84 99-192 179-262 (319)
248 COG3629 DnrI DNA-binding trans 96.7 0.05 1.1E-06 39.0 10.5 78 98-176 154-236 (280)
249 COG0457 NrfG FOG: TPR repeat [ 96.7 0.1 2.2E-06 35.8 21.8 189 7-196 38-231 (291)
250 COG3118 Thioredoxin domain-con 96.7 0.13 2.9E-06 36.9 18.4 124 70-196 142-265 (304)
251 PF04184 ST7: ST7 protein; In 96.7 0.2 4.3E-06 38.8 16.6 74 66-139 263-338 (539)
252 PF13431 TPR_17: Tetratricopep 96.5 0.0037 8.1E-08 29.1 2.7 20 96-115 12-31 (34)
253 PF10602 RPN7: 26S proteasome 96.5 0.11 2.4E-06 34.7 10.4 98 98-195 37-141 (177)
254 COG3898 Uncharacterized membra 96.5 0.24 5.2E-06 37.2 21.6 82 5-90 133-216 (531)
255 COG4785 NlpI Lipoprotein NlpI, 96.5 0.16 3.4E-06 35.0 13.0 31 167-197 237-267 (297)
256 KOG1130 Predicted G-alpha GTPa 96.4 0.025 5.5E-07 42.4 7.6 133 28-160 196-343 (639)
257 PF13431 TPR_17: Tetratricopep 96.4 0.0053 1.2E-07 28.5 2.8 31 121-152 3-33 (34)
258 PF13170 DUF4003: Protein of u 96.4 0.24 5.2E-06 36.2 17.1 132 43-176 78-226 (297)
259 PF13170 DUF4003: Protein of u 96.4 0.24 5.2E-06 36.2 14.4 137 7-145 77-230 (297)
260 PF07079 DUF1347: Protein of u 96.4 0.31 6.7E-06 37.3 13.8 141 37-179 16-179 (549)
261 KOG2114 Vacuolar assembly/sort 96.4 0.13 2.9E-06 42.0 11.7 169 3-192 345-515 (933)
262 smart00299 CLH Clathrin heavy 96.2 0.16 3.4E-06 32.5 15.5 126 66-214 11-137 (140)
263 KOG1941 Acetylcholine receptor 96.2 0.32 6.9E-06 36.2 12.0 131 65-195 125-274 (518)
264 PF13176 TPR_7: Tetratricopept 96.2 0.019 4E-07 27.0 4.1 23 135-157 2-24 (36)
265 KOG1941 Acetylcholine receptor 96.2 0.34 7.4E-06 36.1 11.9 130 29-159 124-273 (518)
266 KOG4570 Uncharacterized conser 96.1 0.074 1.6E-06 38.5 8.2 101 22-126 59-164 (418)
267 PF13176 TPR_7: Tetratricopept 96.1 0.019 4.1E-07 27.0 3.8 26 99-124 1-26 (36)
268 PF04184 ST7: ST7 protein; In 96.1 0.49 1.1E-05 36.8 17.5 84 99-182 261-346 (539)
269 KOG1538 Uncharacterized conser 95.9 0.68 1.5E-05 37.3 13.6 60 137-198 778-848 (1081)
270 PF07079 DUF1347: Protein of u 95.9 0.54 1.2E-05 36.1 13.9 138 3-144 17-179 (549)
271 PF00515 TPR_1: Tetratricopept 95.9 0.039 8.5E-07 25.3 4.5 26 65-90 4-29 (34)
272 PF02284 COX5A: Cytochrome c o 95.9 0.17 3.7E-06 30.1 8.7 44 151-194 29-72 (108)
273 KOG4234 TPR repeat-containing 95.9 0.23 5.1E-06 33.7 9.4 92 35-127 103-198 (271)
274 PF04053 Coatomer_WDAD: Coatom 95.8 0.26 5.6E-06 38.2 10.8 102 35-157 326-427 (443)
275 cd00923 Cyt_c_Oxidase_Va Cytoc 95.8 0.11 2.4E-06 30.5 6.5 45 115-159 25-69 (103)
276 PF00515 TPR_1: Tetratricopept 95.7 0.03 6.5E-07 25.7 3.7 27 134-160 3-29 (34)
277 COG3898 Uncharacterized membra 95.6 0.67 1.5E-05 35.0 20.0 51 4-55 166-216 (531)
278 COG4649 Uncharacterized protei 95.6 0.38 8.3E-06 31.9 15.1 142 61-203 58-203 (221)
279 PF00637 Clathrin: Region in C 95.6 0.012 2.5E-07 37.8 2.6 82 69-157 14-95 (143)
280 PF07719 TPR_2: Tetratricopept 95.6 0.063 1.4E-06 24.5 4.5 24 67-90 6-29 (34)
281 KOG4570 Uncharacterized conser 95.6 0.55 1.2E-05 34.3 10.7 129 32-162 24-165 (418)
282 PF09613 HrpB1_HrpK: Bacterial 95.6 0.37 8E-06 31.5 14.0 51 74-125 22-72 (160)
283 KOG1550 Extracellular protein 95.5 1 2.2E-05 36.3 18.2 177 7-197 227-427 (552)
284 PF09613 HrpB1_HrpK: Bacterial 95.5 0.38 8.2E-06 31.4 13.5 96 103-202 16-112 (160)
285 PF09205 DUF1955: Domain of un 95.5 0.35 7.5E-06 30.5 14.5 67 132-199 86-152 (161)
286 PF07719 TPR_2: Tetratricopept 95.5 0.042 9.1E-07 25.1 3.7 26 170-195 4-29 (34)
287 PF11207 DUF2989: Protein of u 95.3 0.43 9.3E-06 32.4 9.2 79 37-117 117-198 (203)
288 KOG4648 Uncharacterized conser 95.3 0.15 3.3E-06 37.5 7.5 96 104-203 104-199 (536)
289 PF11207 DUF2989: Protein of u 95.3 0.42 9E-06 32.5 9.1 80 72-153 117-199 (203)
290 PRK15180 Vi polysaccharide bio 95.3 0.81 1.8E-05 35.6 11.5 119 5-127 302-421 (831)
291 PF08631 SPO22: Meiosis protei 95.2 0.8 1.7E-05 33.2 19.3 164 37-203 3-193 (278)
292 PF09205 DUF1955: Domain of un 95.2 0.44 9.6E-06 30.0 12.4 67 96-163 85-151 (161)
293 PF13929 mRNA_stabil: mRNA sta 95.1 0.87 1.9E-05 32.9 12.4 146 30-178 134-289 (292)
294 PRK15180 Vi polysaccharide bio 95.0 0.79 1.7E-05 35.6 10.6 91 103-195 329-419 (831)
295 PF10345 Cohesin_load: Cohesin 94.9 1.7 3.7E-05 35.5 19.6 186 8-194 37-252 (608)
296 KOG2114 Vacuolar assembly/sort 94.8 1.8 4E-05 36.0 12.7 147 30-191 337-487 (933)
297 KOG2280 Vacuolar assembly/sort 94.7 0.76 1.7E-05 37.5 10.4 105 68-191 690-794 (829)
298 PF06552 TOM20_plant: Plant sp 94.7 0.77 1.7E-05 30.6 9.4 28 113-142 96-123 (186)
299 COG2976 Uncharacterized protei 94.7 0.84 1.8E-05 30.9 15.0 129 62-197 54-189 (207)
300 PF13374 TPR_10: Tetratricopep 94.7 0.13 2.8E-06 24.7 4.3 26 134-159 4-29 (42)
301 KOG1550 Extracellular protein 94.6 2 4.3E-05 34.7 16.0 151 2-163 259-428 (552)
302 PF13374 TPR_10: Tetratricopep 94.5 0.15 3.2E-06 24.5 4.3 25 64-88 4-28 (42)
303 PF07163 Pex26: Pex26 protein; 94.4 1.3 2.8E-05 31.8 10.1 115 6-120 49-181 (309)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 94.4 0.57 1.2E-05 27.6 7.2 45 45-89 25-69 (103)
305 KOG1585 Protein required for f 94.3 1.3 2.8E-05 31.3 14.7 187 27-215 31-241 (308)
306 TIGR03504 FimV_Cterm FimV C-te 94.3 0.1 2.2E-06 25.9 3.2 23 138-160 5-27 (44)
307 KOG4648 Uncharacterized conser 94.2 0.32 7E-06 35.9 6.9 92 69-162 104-195 (536)
308 KOG4234 TPR repeat-containing 94.1 1.2 2.7E-05 30.4 10.8 93 70-163 103-199 (271)
309 COG3947 Response regulator con 94.1 1.6 3.5E-05 31.6 14.3 71 134-205 281-356 (361)
310 TIGR02561 HrpB1_HrpK type III 94.1 0.99 2.2E-05 29.1 12.3 54 73-127 21-74 (153)
311 PF13174 TPR_6: Tetratricopept 93.9 0.17 3.7E-06 22.8 3.6 22 69-90 7-28 (33)
312 COG1747 Uncharacterized N-term 93.9 2.6 5.6E-05 33.3 17.1 164 26-196 65-234 (711)
313 PF06552 TOM20_plant: Plant sp 93.6 1.4 3.1E-05 29.4 11.6 75 115-198 53-138 (186)
314 PF13181 TPR_8: Tetratricopept 93.6 0.31 6.8E-06 22.1 4.2 27 99-125 3-29 (34)
315 PF13181 TPR_8: Tetratricopept 93.5 0.34 7.5E-06 22.0 4.3 27 134-160 3-29 (34)
316 PF07035 Mic1: Colon cancer-as 93.5 1.5 3.2E-05 29.1 14.9 133 49-195 16-148 (167)
317 KOG0276 Vesicle coat complex C 93.4 2.4 5.2E-05 34.1 10.6 101 37-158 647-747 (794)
318 COG4785 NlpI Lipoprotein NlpI, 93.4 1.9 4E-05 30.0 14.2 152 8-163 81-268 (297)
319 COG4455 ImpE Protein of avirul 93.3 1.6 3.5E-05 30.3 8.5 76 65-141 4-81 (273)
320 KOG1586 Protein required for f 93.3 2 4.3E-05 30.2 13.0 132 35-167 42-189 (288)
321 PF00637 Clathrin: Region in C 93.2 0.041 8.8E-07 35.3 1.0 85 32-123 12-96 (143)
322 KOG4077 Cytochrome c oxidase, 93.0 0.96 2.1E-05 28.2 6.5 44 116-159 68-111 (149)
323 KOG1586 Protein required for f 93.0 2.2 4.8E-05 30.0 12.0 96 107-202 83-189 (288)
324 PF13174 TPR_6: Tetratricopept 92.8 0.28 6.1E-06 22.0 3.3 18 141-158 9-26 (33)
325 KOG4507 Uncharacterized conser 92.6 1.7 3.7E-05 34.8 8.8 98 5-104 620-717 (886)
326 PF07035 Mic1: Colon cancer-as 92.6 2.1 4.4E-05 28.4 15.1 135 12-160 14-148 (167)
327 COG4455 ImpE Protein of avirul 92.5 1.9 4.2E-05 29.9 8.0 52 3-55 12-63 (273)
328 PF08424 NRDE-2: NRDE-2, neces 92.5 3.4 7.4E-05 30.8 16.7 117 80-198 49-185 (321)
329 KOG2063 Vacuolar assembly/sort 92.5 6.1 0.00013 33.6 16.5 187 29-215 506-745 (877)
330 PF02284 COX5A: Cytochrome c o 92.4 1.4 3.1E-05 26.3 9.4 47 45-91 28-74 (108)
331 COG2909 MalT ATP-dependent tra 92.4 6 0.00013 33.4 16.6 196 4-199 427-650 (894)
332 COG0790 FOG: TPR repeat, SEL1 92.3 3.3 7.1E-05 30.2 24.6 190 4-206 53-276 (292)
333 KOG0276 Vesicle coat complex C 92.3 4.5 9.7E-05 32.7 10.7 133 28-193 615-747 (794)
334 PF07721 TPR_4: Tetratricopept 92.1 0.35 7.6E-06 20.7 3.0 14 140-153 9-22 (26)
335 COG3947 Response regulator con 91.8 3.8 8.3E-05 29.9 15.0 26 170-195 282-307 (361)
336 PF02259 FAT: FAT domain; Int 91.8 4.3 9.3E-05 30.4 15.3 66 130-195 144-212 (352)
337 PF07163 Pex26: Pex26 protein; 91.7 3.8 8.3E-05 29.6 9.5 89 67-155 88-181 (309)
338 TIGR03504 FimV_Cterm FimV C-te 91.5 0.79 1.7E-05 22.7 4.1 23 103-125 5-27 (44)
339 COG2976 Uncharacterized protei 91.5 3.2 6.9E-05 28.3 14.4 93 68-162 95-189 (207)
340 KOG2471 TPR repeat-containing 91.4 3.4 7.3E-05 32.5 9.0 110 104-215 247-382 (696)
341 PF10579 Rapsyn_N: Rapsyn N-te 91.0 1 2.2E-05 25.5 4.6 46 39-84 18-65 (80)
342 PF14853 Fis1_TPR_C: Fis1 C-te 90.8 1.4 3E-05 22.9 4.8 34 173-208 7-40 (53)
343 PF11817 Foie-gras_1: Foie gra 90.7 3.8 8.3E-05 29.2 8.6 79 44-124 162-245 (247)
344 KOG2280 Vacuolar assembly/sort 90.6 8.9 0.00019 31.8 14.2 79 133-221 685-763 (829)
345 KOG4507 Uncharacterized conser 90.6 4.3 9.4E-05 32.7 9.1 87 75-162 620-706 (886)
346 PF13929 mRNA_stabil: mRNA sta 90.3 5.5 0.00012 29.0 13.7 145 65-212 134-288 (292)
347 KOG1464 COP9 signalosome, subu 90.3 5.4 0.00012 28.8 17.9 191 4-194 39-258 (440)
348 smart00028 TPR Tetratricopepti 90.2 0.72 1.6E-05 19.7 3.3 18 105-122 9-26 (34)
349 COG0735 Fur Fe2+/Zn2+ uptake r 90.1 3.6 7.9E-05 26.6 7.4 63 14-77 8-70 (145)
350 KOG0890 Protein kinase of the 90.1 8.9 0.00019 36.2 11.6 118 32-156 1388-1507(2382)
351 PF09797 NatB_MDM20: N-acetylt 90.0 7 0.00015 29.7 10.2 58 43-101 199-256 (365)
352 TIGR02508 type_III_yscG type I 89.9 2.8 6.1E-05 25.1 8.1 79 42-127 20-98 (115)
353 PF10579 Rapsyn_N: Rapsyn N-te 89.9 2.2 4.7E-05 24.2 5.3 46 74-119 18-65 (80)
354 KOG4642 Chaperone-dependent E3 89.7 5.6 0.00012 28.2 10.8 118 36-156 19-141 (284)
355 KOG2066 Vacuolar assembly/sort 89.5 11 0.00024 31.4 12.7 146 3-160 367-533 (846)
356 KOG0890 Protein kinase of the 89.4 20 0.00043 34.2 13.1 146 3-156 1394-1542(2382)
357 KOG0376 Serine-threonine phosp 89.4 1.1 2.3E-05 34.7 5.1 106 69-178 11-116 (476)
358 KOG1258 mRNA processing protei 89.3 10 0.00022 30.6 19.4 186 26-216 296-489 (577)
359 COG0790 FOG: TPR repeat, SEL1 89.3 6.7 0.00015 28.6 20.7 154 5-168 90-273 (292)
360 KOG4642 Chaperone-dependent E3 89.2 6.2 0.00013 28.0 11.3 116 2-121 20-141 (284)
361 TIGR02561 HrpB1_HrpK type III 89.1 4.5 9.8E-05 26.2 13.8 53 39-92 22-74 (153)
362 KOG2396 HAT (Half-A-TPR) repea 88.8 10 0.00022 30.0 11.9 66 96-162 104-170 (568)
363 KOG1308 Hsp70-interacting prot 88.3 1.1 2.3E-05 33.2 4.3 115 74-193 126-241 (377)
364 TIGR02508 type_III_yscG type I 88.2 3.9 8.5E-05 24.5 7.9 51 140-196 47-97 (115)
365 PF08424 NRDE-2: NRDE-2, neces 88.2 9 0.00019 28.6 18.1 146 15-163 8-185 (321)
366 cd00280 TRFH Telomeric Repeat 88.0 6.3 0.00014 26.6 7.4 66 113-182 85-158 (200)
367 KOG1920 IkappaB kinase complex 87.8 19 0.00041 31.8 12.1 54 139-195 972-1027(1265)
368 PRK10564 maltose regulon perip 87.8 1.8 3.9E-05 31.5 5.1 35 171-205 261-295 (303)
369 PF11817 Foie-gras_1: Foie gra 87.6 5.8 0.00013 28.3 7.7 61 134-194 180-245 (247)
370 PF11848 DUF3368: Domain of un 87.4 2.5 5.4E-05 21.3 4.6 33 178-210 13-45 (48)
371 KOG1538 Uncharacterized conser 87.2 4.3 9.4E-05 33.1 7.2 89 27-126 747-846 (1081)
372 PF14689 SPOB_a: Sensor_kinase 87.2 3.2 6.9E-05 22.3 4.8 25 30-54 26-50 (62)
373 PF13762 MNE1: Mitochondrial s 86.5 6.8 0.00015 25.3 9.7 83 99-181 41-129 (145)
374 PF11846 DUF3366: Domain of un 86.2 7 0.00015 26.6 7.3 33 129-161 141-173 (193)
375 PF11846 DUF3366: Domain of un 86.0 8.1 0.00018 26.3 7.5 35 164-200 141-175 (193)
376 KOG2063 Vacuolar assembly/sort 85.9 13 0.00028 31.9 9.6 118 99-216 506-640 (877)
377 PF09797 NatB_MDM20: N-acetylt 85.9 7.9 0.00017 29.4 8.0 113 7-122 198-311 (365)
378 cd00280 TRFH Telomeric Repeat 85.8 8.6 0.00019 26.0 9.8 64 78-144 85-155 (200)
379 KOG1308 Hsp70-interacting prot 85.3 0.81 1.8E-05 33.8 2.4 94 37-132 124-217 (377)
380 PF12862 Apc5: Anaphase-promot 85.0 5.8 0.00012 23.3 5.6 54 143-196 9-70 (94)
381 KOG0376 Serine-threonine phosp 84.5 4.1 9E-05 31.7 5.8 102 36-142 13-115 (476)
382 PRK10941 hypothetical protein; 84.3 14 0.00029 26.9 10.8 80 99-179 183-263 (269)
383 PF09670 Cas_Cas02710: CRISPR- 84.2 17 0.00037 28.0 10.8 56 70-126 139-198 (379)
384 PF07575 Nucleopor_Nup85: Nup8 83.8 5.2 0.00011 32.5 6.6 33 179-211 507-539 (566)
385 PF11663 Toxin_YhaV: Toxin wit 83.7 2.2 4.7E-05 27.0 3.5 31 179-211 107-137 (140)
386 COG1747 Uncharacterized N-term 83.3 22 0.00047 28.5 19.4 166 5-178 79-250 (711)
387 PF10345 Cohesin_load: Cohesin 83.2 25 0.00053 29.1 17.2 179 26-214 29-235 (608)
388 KOG2041 WD40 repeat protein [G 83.0 27 0.00058 29.3 15.1 58 139-196 1028-1086(1189)
389 PRK09687 putative lyase; Provi 82.8 16 0.00035 26.7 21.8 88 114-213 191-278 (280)
390 PRK10564 maltose regulon perip 82.7 5 0.00011 29.3 5.4 31 134-164 259-289 (303)
391 PF14689 SPOB_a: Sensor_kinase 82.7 5.7 0.00012 21.3 4.8 16 140-155 31-46 (62)
392 KOG2471 TPR repeat-containing 82.6 23 0.00049 28.2 9.6 109 71-180 249-382 (696)
393 cd08819 CARD_MDA5_2 Caspase ac 82.1 7.8 0.00017 22.5 6.9 14 111-124 50-63 (88)
394 KOG0991 Replication factor C, 82.0 16 0.00034 26.0 12.7 37 165-202 237-273 (333)
395 PHA02875 ankyrin repeat protei 81.8 21 0.00045 27.6 9.0 68 15-86 18-89 (413)
396 KOG3364 Membrane protein invol 81.4 12 0.00025 24.0 8.8 67 95-162 30-101 (149)
397 KOG4077 Cytochrome c oxidase, 81.1 11 0.00024 23.7 7.1 47 80-126 67-113 (149)
398 PRK10941 hypothetical protein; 81.1 19 0.0004 26.2 10.4 80 134-214 183-263 (269)
399 KOG4814 Uncharacterized conser 80.7 31 0.00066 28.6 9.3 87 107-195 364-456 (872)
400 COG5108 RPO41 Mitochondrial DN 80.1 25 0.00055 29.2 8.7 91 32-125 33-131 (1117)
401 smart00386 HAT HAT (Half-A-TPR 80.0 3.9 8.5E-05 17.8 3.8 25 77-102 2-26 (33)
402 PF11848 DUF3368: Domain of un 79.6 6.3 0.00014 19.9 5.1 32 143-174 13-44 (48)
403 KOG2062 26S proteasome regulat 79.5 37 0.00079 28.6 13.6 32 162-196 208-239 (929)
404 COG0735 Fur Fe2+/Zn2+ uptake r 79.4 14 0.00031 23.9 7.6 61 50-111 9-69 (145)
405 KOG1839 Uncharacterized protei 79.1 48 0.001 29.8 11.7 154 36-189 941-1121(1236)
406 PF04910 Tcf25: Transcriptiona 79.1 26 0.00057 26.7 17.4 120 6-125 8-167 (360)
407 PF14669 Asp_Glu_race_2: Putat 79.0 9.6 0.00021 26.0 5.4 55 102-156 137-205 (233)
408 PF10366 Vps39_1: Vacuolar sor 79.0 12 0.00026 22.8 7.3 27 99-125 41-67 (108)
409 PF02259 FAT: FAT domain; Int 78.7 25 0.00054 26.3 15.5 65 61-125 145-212 (352)
410 PF14561 TPR_20: Tetratricopep 77.9 11 0.00025 22.0 8.7 32 130-161 20-51 (90)
411 PF14853 Fis1_TPR_C: Fis1 C-te 77.9 7.9 0.00017 20.1 5.1 20 106-125 10-29 (53)
412 COG5159 RPN6 26S proteasome re 77.8 25 0.00055 25.9 11.4 125 34-158 10-151 (421)
413 COG5108 RPO41 Mitochondrial DN 77.7 26 0.00057 29.1 8.2 91 102-195 33-131 (1117)
414 PF11663 Toxin_YhaV: Toxin wit 77.2 4.2 9.1E-05 25.8 3.2 30 110-141 108-137 (140)
415 PF12862 Apc5: Anaphase-promot 76.6 13 0.00028 21.8 6.7 23 103-125 47-69 (94)
416 KOG3364 Membrane protein invol 76.1 18 0.00039 23.2 9.6 68 59-126 29-100 (149)
417 KOG0686 COP9 signalosome, subu 76.0 35 0.00075 26.5 14.0 95 27-123 150-255 (466)
418 cd07153 Fur_like Ferric uptake 75.8 14 0.00031 22.6 5.4 47 138-184 6-52 (116)
419 KOG2908 26S proteasome regulat 75.1 33 0.00072 25.8 10.5 145 42-188 22-178 (380)
420 PF14561 TPR_20: Tetratricopep 74.9 14 0.00031 21.6 9.0 58 89-147 15-73 (90)
421 cd08819 CARD_MDA5_2 Caspase ac 74.6 14 0.00031 21.5 7.2 65 46-116 21-85 (88)
422 PF02847 MA3: MA3 domain; Int 74.4 17 0.00036 22.1 6.9 21 68-88 8-28 (113)
423 PF11838 ERAP1_C: ERAP1-like C 74.0 33 0.00072 25.4 13.1 113 39-156 142-261 (324)
424 PF01475 FUR: Ferric uptake re 74.0 14 0.00031 22.8 5.1 42 173-214 13-54 (120)
425 PF03745 DUF309: Domain of unk 73.9 12 0.00026 20.1 5.9 32 39-70 11-42 (62)
426 COG5159 RPN6 26S proteasome re 73.1 35 0.00076 25.2 16.1 156 3-158 14-191 (421)
427 KOG4567 GTPase-activating prot 73.0 36 0.00078 25.3 7.7 70 82-156 263-342 (370)
428 KOG0686 COP9 signalosome, subu 72.7 43 0.00093 26.0 13.0 164 2-174 160-351 (466)
429 PRK11639 zinc uptake transcrip 72.4 26 0.00056 23.4 7.6 59 19-78 18-76 (169)
430 PRK09857 putative transposase; 72.2 37 0.0008 25.1 8.3 68 133-201 207-274 (292)
431 PF04762 IKI3: IKI3 family; I 72.1 70 0.0015 28.2 10.2 189 2-193 704-927 (928)
432 cd07153 Fur_like Ferric uptake 71.9 18 0.00038 22.1 5.2 46 33-78 6-51 (116)
433 PF00244 14-3-3: 14-3-3 protei 71.9 33 0.00071 24.4 11.3 33 5-37 14-46 (236)
434 PRK09462 fur ferric uptake reg 71.7 24 0.00053 22.8 7.4 60 18-78 8-68 (148)
435 PF09986 DUF2225: Uncharacteri 71.6 32 0.00069 24.1 12.2 49 78-126 141-194 (214)
436 PF02184 HAT: HAT (Half-A-TPR) 71.5 8.7 0.00019 17.5 2.8 21 183-205 3-23 (32)
437 PF09670 Cas_Cas02710: CRISPR- 71.4 45 0.00097 25.7 12.4 56 35-91 139-198 (379)
438 COG5191 Uncharacterized conser 71.2 23 0.0005 26.4 6.0 77 60-138 105-182 (435)
439 PF09454 Vps23_core: Vps23 cor 71.2 15 0.00032 20.1 4.9 48 130-178 6-53 (65)
440 PF01475 FUR: Ferric uptake re 71.2 17 0.00036 22.5 5.0 48 31-78 11-58 (120)
441 COG4259 Uncharacterized protei 70.3 21 0.00045 21.5 6.0 49 43-91 53-101 (121)
442 KOG0545 Aryl-hydrocarbon recep 70.3 38 0.00082 24.4 11.4 95 31-126 182-293 (329)
443 PF07678 A2M_comp: A-macroglob 69.5 38 0.00083 24.2 10.4 81 114-196 116-221 (246)
444 PF10255 Paf67: RNA polymerase 69.4 52 0.0011 25.6 8.8 61 64-124 124-191 (404)
445 PF10475 DUF2450: Protein of u 68.6 45 0.00097 24.6 9.2 114 68-192 104-222 (291)
446 PF03745 DUF309: Domain of unk 68.3 17 0.00036 19.6 6.1 46 74-119 11-61 (62)
447 PRK09687 putative lyase; Provi 67.2 47 0.001 24.3 20.4 87 102-196 147-234 (280)
448 PRK11639 zinc uptake transcrip 67.0 35 0.00076 22.8 8.3 62 123-185 17-78 (169)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 66.9 29 0.00063 21.8 8.6 76 43-124 49-126 (126)
450 KOG4279 Serine/threonine prote 66.2 84 0.0018 26.9 11.7 177 13-196 184-395 (1226)
451 COG4976 Predicted methyltransf 64.4 23 0.00051 25.1 4.8 58 36-94 4-61 (287)
452 PRK09462 fur ferric uptake reg 64.0 37 0.0008 22.0 7.8 62 122-184 7-69 (148)
453 PF14929 TAF1_subA: TAF RNA Po 63.4 82 0.0018 25.8 14.8 137 41-182 323-470 (547)
454 KOG1464 COP9 signalosome, subu 63.2 57 0.0012 23.9 13.7 186 21-206 20-231 (440)
455 PF10255 Paf67: RNA polymerase 62.3 74 0.0016 24.9 11.0 61 29-89 124-191 (404)
456 COG2909 MalT ATP-dependent tra 62.0 1.1E+02 0.0023 26.6 16.9 91 106-196 424-526 (894)
457 PRK13342 recombination factor 61.7 76 0.0016 24.8 17.6 29 24-54 173-201 (413)
458 KOG3807 Predicted membrane pro 61.5 69 0.0015 24.3 9.9 119 8-137 232-351 (556)
459 PF06957 COPI_C: Coatomer (COP 61.3 79 0.0017 24.9 7.8 110 2-111 214-349 (422)
460 PF10366 Vps39_1: Vacuolar sor 61.1 35 0.00077 20.8 7.3 27 134-160 41-67 (108)
461 KOG2422 Uncharacterized conser 60.5 95 0.0021 25.5 17.7 157 4-160 250-447 (665)
462 COG4259 Uncharacterized protei 60.4 35 0.00076 20.5 6.8 60 78-139 53-112 (121)
463 KOG1920 IkappaB kinase complex 60.4 1.3E+02 0.0029 27.2 14.6 44 10-55 775-820 (1265)
464 COG5187 RPN7 26S proteasome re 59.6 70 0.0015 23.8 14.4 98 61-160 114-220 (412)
465 PF02847 MA3: MA3 domain; Int 59.1 38 0.00082 20.5 6.2 23 31-53 6-28 (113)
466 COG5191 Uncharacterized conser 58.6 53 0.0011 24.6 5.9 75 96-172 106-181 (435)
467 PF04190 DUF410: Protein of un 58.3 69 0.0015 23.2 16.2 158 4-195 2-169 (260)
468 PF15297 CKAP2_C: Cytoskeleton 58.0 81 0.0018 24.0 8.9 66 78-143 119-186 (353)
469 PF09986 DUF2225: Uncharacteri 57.9 62 0.0014 22.6 11.6 29 134-162 167-195 (214)
470 KOG4521 Nuclear pore complex, 57.2 1.5E+02 0.0033 26.9 15.9 20 1-20 929-948 (1480)
471 PF09454 Vps23_core: Vps23 cor 57.2 31 0.00066 18.8 4.5 29 29-57 10-38 (65)
472 KOG0292 Vesicle coat complex C 57.2 97 0.0021 27.1 7.7 47 3-55 654-700 (1202)
473 PRK12798 chemotaxis protein; R 57.1 93 0.002 24.4 18.7 195 5-202 125-330 (421)
474 PHA02875 ankyrin repeat protei 56.7 91 0.002 24.1 8.7 170 14-201 50-229 (413)
475 KOG4521 Nuclear pore complex, 54.8 1.7E+02 0.0037 26.6 11.4 79 99-184 985-1071(1480)
476 PF04910 Tcf25: Transcriptiona 54.6 97 0.0021 23.8 18.6 117 39-160 22-167 (360)
477 KOG0292 Vesicle coat complex C 54.2 1.5E+02 0.0033 26.0 12.3 17 4-20 1003-1019(1202)
478 PRK14958 DNA polymerase III su 54.1 1.2E+02 0.0026 24.7 11.5 75 125-202 193-280 (509)
479 KOG0551 Hsp90 co-chaperone CNS 53.9 96 0.0021 23.6 9.1 94 64-158 83-179 (390)
480 KOG4567 GTPase-activating prot 53.7 93 0.002 23.4 9.5 72 47-123 263-344 (370)
481 PF13762 MNE1: Mitochondrial s 53.7 60 0.0013 21.1 13.1 83 65-147 42-130 (145)
482 PRK11619 lytic murein transgly 53.7 1.4E+02 0.0029 25.2 14.9 76 66-147 103-178 (644)
483 KOG1839 Uncharacterized protei 53.2 1.8E+02 0.0039 26.6 11.8 143 14-156 960-1123(1236)
484 KOG1258 mRNA processing protei 53.2 1.3E+02 0.0028 24.8 18.9 170 4-181 309-489 (577)
485 PRK08691 DNA polymerase III su 53.1 1.4E+02 0.0031 25.4 11.3 86 114-202 181-280 (709)
486 TIGR01529 argR_whole arginine 52.7 50 0.0011 21.5 4.7 33 139-171 7-39 (146)
487 KOG2582 COP9 signalosome, subu 52.5 1.1E+02 0.0023 23.7 9.5 55 143-197 288-346 (422)
488 PF04090 RNA_pol_I_TF: RNA pol 52.5 76 0.0016 22.0 7.7 31 27-57 41-71 (199)
489 PF08780 NTase_sub_bind: Nucle 52.3 54 0.0012 20.6 4.7 74 77-153 5-80 (124)
490 COG2912 Uncharacterized conser 52.1 91 0.002 22.8 7.3 60 101-161 185-244 (269)
491 COG4976 Predicted methyltransf 51.8 50 0.0011 23.6 4.7 55 2-57 5-59 (287)
492 PF04097 Nic96: Nup93/Nic96; 51.7 1.4E+02 0.0031 24.9 11.2 28 63-90 325-355 (613)
493 PF02607 B12-binding_2: B12 bi 51.0 43 0.00093 18.7 4.5 36 145-180 14-49 (79)
494 KOG2422 Uncharacterized conser 50.8 1.4E+02 0.0031 24.6 14.4 131 64-194 286-446 (665)
495 PF14669 Asp_Glu_race_2: Putat 50.6 82 0.0018 21.8 16.7 171 22-192 3-206 (233)
496 PRK14956 DNA polymerase III su 50.6 1.3E+02 0.0029 24.2 10.6 84 117-203 186-284 (484)
497 COG2405 Predicted nucleic acid 49.9 54 0.0012 21.2 4.2 33 178-210 120-152 (157)
498 cd08790 DED_DEDD Death Effecto 49.6 50 0.0011 19.7 3.9 39 111-150 38-76 (97)
499 TIGR01503 MthylAspMut_E methyl 49.4 53 0.0012 26.0 5.0 45 78-125 70-114 (480)
500 PF12926 MOZART2: Mitotic-spin 49.4 52 0.0011 19.2 7.5 42 153-194 29-70 (88)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.3e-42 Score=274.62 Aligned_cols=214 Identities=21% Similarity=0.336 Sum_probs=88.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHh--cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 83 MMFSKMLE--KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 83 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44444432 2333344444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcC
Q 027412 161 NHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 216 (223)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 216 (223)
.|+.||..+|+.++.+|.+.|++++|.+++++|.+.|+.||..+|+.++.+|++.|
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 44444444444444444444444444444444444444444444444444444433
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-41 Score=273.75 Aligned_cols=216 Identities=18% Similarity=0.335 Sum_probs=106.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHh--CCCCCcHHHHHHHHHHHHhcCChh
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC--VQLKPNSITFTILIDAFCKEGRMD 79 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 79 (223)
|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 445555555555555555555555555555555555555555555555555543 334455555555555555555555
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+|.++|+.|.+.++.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 55555555555544444445555555554444444444444444444444444444444444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCC
Q 027412 160 DNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 217 (223)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 217 (223)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|.
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 4444444444444444444444444444444444444444444444444444444443
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=250.78 Aligned_cols=211 Identities=20% Similarity=0.353 Sum_probs=141.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|
T Consensus 269 y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 5566666677666666653 356666777777777777777777777666666666666676666766666666666
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
.+++..|.+.|..|+..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666664 356666666666666666666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH-CCCCCchhhHHHHhhhHhhcCCCcc
Q 027412 162 HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR-NGIMPDGLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~ 220 (223)
|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|..++
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 6666666666666666666666666666666654 3666666666666666666665443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=249.79 Aligned_cols=213 Identities=23% Similarity=0.333 Sum_probs=202.5
Q ss_pred CcccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+
T Consensus 379 A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999995 4689999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCcc
Q 027412 161 -NHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 161 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 220 (223)
.|+.|+..+|+.++.+|.+.|++++|.+++++| ++.|+..+|++|+.+|...|+.+.
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHH
Confidence 699999999999999999999999999998765 579999999999999998886543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-36 Score=243.71 Aligned_cols=208 Identities=20% Similarity=0.328 Sum_probs=129.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHH-----------------------------------HHHHHHHHhcCchhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITY-----------------------------------NTIICGYCSLNRLDEA 46 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~~~~~~a 46 (223)
|++.|++++|+++|++|...|+.||..+| +.|+.+|++.|+++.|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 55667777777777777666666655444 3444445555555555
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 47 VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
.++|++|. .||..+|+.++.+|++.|++++|.++|++|...|+.||..||+.++.+|.+.|+.+.+.+++..+.+.
T Consensus 242 ~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 242 RLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 55555554 34555666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHH
Q 027412 127 NISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLS 206 (223)
Q Consensus 127 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 206 (223)
|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..||+
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 6666666666666666666666666666666542 455566666666666666666666666666666666666666
Q ss_pred HHhhhHhhcCC
Q 027412 207 TLADYNLQSSG 217 (223)
Q Consensus 207 ~l~~~~~~~~~ 217 (223)
.++.+|++.|.
T Consensus 394 ~ll~a~~~~g~ 404 (857)
T PLN03077 394 SVLSACACLGD 404 (857)
T ss_pred HHHHHHhccch
Confidence 66666655554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-35 Score=240.63 Aligned_cols=210 Identities=21% Similarity=0.309 Sum_probs=145.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
|++.|+++.|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.+
T Consensus 232 y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 5666777777777776653 456667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
.+++..|.+.|..||..+|+.++.+|.+.|++++|.++|++|. .||..+|+.++.+|.+.|++++|.++|++|.+.
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777776664 356666777777777777777777777777666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCc
Q 027412 162 HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (223)
|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+++.|+.+|++.|..+
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 6667777777777777777777777777777777677777777777777776666544
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=8.1e-20 Score=136.96 Aligned_cols=207 Identities=22% Similarity=0.195 Sum_probs=143.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCC
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN----SITFTILIDAFCKEGR 77 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 77 (223)
|.+.|++++|+.+|+++.+.. +++..++..++.++.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 345677777777777776652 33566677777777777777777777777766543322 1234556666777777
Q ss_pred hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 027412 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHC 157 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (223)
+++|...++++.+..+. +...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887777766544 45566777777888888888888888877653222245667777788888888888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhh
Q 027412 158 ALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 214 (223)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 214 (223)
+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 77654 44455677777888888888888888877764 6777777777776654
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=8.4e-20 Score=136.90 Aligned_cols=213 Identities=16% Similarity=0.167 Sum_probs=116.4
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcC---HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPD---IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (223)
.+.|++++|+.+++.+...+..++ ...+..++..|...|++++|..+|+++.+.. +++..++..++..+.+.|+++
T Consensus 80 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~ 158 (389)
T PRK11788 80 RRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQ 158 (389)
T ss_pred HHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHH
Confidence 345555555555555554321111 1334555555555566666666665555432 224455555666666666666
Q ss_pred HHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 027412 80 DATMMFSKMLEKGPKAN----VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAF 155 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (223)
+|.+.++.+.+.++.+. ...+..+...+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.+
T Consensus 159 ~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666555443321 1133445555556666666666666665543 334445556666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCc
Q 027412 156 HCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (223)
+++.+.++.....+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|..+
T Consensus 238 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 238 ERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred HHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHH
Confidence 66665443222345566666666666666666666666653 455555555555555555443
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.83 E-value=1e-17 Score=137.56 Aligned_cols=210 Identities=17% Similarity=0.096 Sum_probs=141.4
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
..|++++|+++++.+.+.+ +.+...+..+..++...|++++|...|+++.... |+..++..++.++.+.|++++|.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHH
Confidence 3455555555555554443 2244455555566666666666666666665543 233445556666666666666666
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
.++++.+..+. +...+..+...|...|++++|...|+++.+.. +.+..+++.++..+...|+ ++|+..++++.+..+
T Consensus 758 ~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 758 TLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 66666665554 56667777777777777777777777777664 5666777777777777777 667777777766544
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCccc
Q 027412 164 LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 221 (223)
.+..++..+...+...|++++|..+++++++.+.. +..++..+...+++.|+.+++
T Consensus 835 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 835 -NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHH
Confidence 35566777888888999999999999999986533 778888888888888876654
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=3e-17 Score=134.79 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 027412 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (223)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (223)
..++..+...|++++|..+++.+.+.. +.+..+|..++.++...|++++|...++++.+.++. +...+..+..++...
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHc
Confidence 333333334444444444444433222 123334444444444444444444444444433322 333344444444444
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 027412 111 QNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLY 190 (223)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 190 (223)
|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.++ .+...+..+...+...|++++|...+
T Consensus 649 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 649 KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44444444444444332 22333444444444444444444444444433332 23334444444444444444444444
Q ss_pred HHHHH
Q 027412 191 DSMLR 195 (223)
Q Consensus 191 ~~~~~ 195 (223)
+++.+
T Consensus 727 ~~~~~ 731 (899)
T TIGR02917 727 RKALK 731 (899)
T ss_pred HHHHh
Confidence 44444
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1.2e-15 Score=120.56 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=119.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
..|++++|+..|++..+.. +.....|..+..++...|++++|...|+++.+..+ .+..++..+...+...|++++|..
T Consensus 343 ~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666666665542 11344566666666666666666666666655532 245566666666666666666666
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
.|++.....+. +...+..+..++.+.|++++|+..+++..+.. +.+...++.+..++...|++++|.+.|++.....+
T Consensus 421 ~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 421 DYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 66666665544 45556666666666666666666666666542 44456666666666666666666666666655432
Q ss_pred CCCH-----H-HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCch-hhHHHHhhhHhhcCCCc
Q 027412 164 LPDV-----V-TYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDG-LLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 164 ~~~~-----~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~ 219 (223)
..+. . .++.....+...|++++|.+++++..+. .|+. ..+..+...+.+.|+.+
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHH
Confidence 2111 0 1111122233346666666666666653 3443 24555555555555443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=6.1e-16 Score=115.94 Aligned_cols=193 Identities=20% Similarity=0.248 Sum_probs=169.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
|...|.++.|++.|++..+. .|+ +.+|+.|..++-..|++.+|.+.|.+.....+. -..+.+.|...|...|.++.
T Consensus 296 YyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchH
Confidence 56789999999999999887 444 779999999999999999999999999877533 56778889999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-IVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
|.++|.......+. -...++.|...|-+.|++++|+..+++.++. .|+ ...|+.+...|-..|+.+.|.+.+.+.+
T Consensus 373 A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 373 ATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 99999999887655 5678899999999999999999999999985 454 6789999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 160 DNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
..++. -.+.++.|...|...|+..+|++.|++.++ ++||..
T Consensus 450 ~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 450 QINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred hcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 87652 457889999999999999999999999998 688854
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=1.6e-15 Score=120.01 Aligned_cols=175 Identities=19% Similarity=0.190 Sum_probs=97.8
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhH--
Q 027412 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS-- 115 (223)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 115 (223)
...|++++|...++.+.+....++......++.++.+.|++++|+..+++..+.++. +...+..+..++...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhH
Confidence 334444444444444333322222222333344555556666666666666655444 45555666666666666664
Q ss_pred --HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 116 --AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 116 --a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
|...++++.... |.+..++..+...+...|++++|...+++..+..+ .+...+..+..++...|++++|...++++
T Consensus 267 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 267 LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666666653 44556666677777777777777777777666554 24555666667777777777777777776
Q ss_pred HHCCCCCchhhHHH-HhhhHhhcCC
Q 027412 194 LRNGIMPDGLLLST-LADYNLQSSG 217 (223)
Q Consensus 194 ~~~~~~p~~~~~~~-l~~~~~~~~~ 217 (223)
.+. .|+...+.. +..++...|+
T Consensus 345 l~~--~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 345 ARE--KGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHh--CccchHHHHHHHHHHHHCCC
Confidence 663 444433322 2333444443
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=3.4e-15 Score=118.03 Aligned_cols=187 Identities=18% Similarity=0.118 Sum_probs=164.3
Q ss_pred cCHHHHHHHHHHHhhCC-C-CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 6 CHLDAALKLFGQLTDRG-L-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
+++++|++.|+...+.+ . +.....+..+..++...|++++|+..+++..+..+. ....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 57899999999998764 2 224567888889999999999999999999877432 46688889999999999999999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
.|++..+.++. +..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+..+
T Consensus 387 ~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999988765 78899999999999999999999999999875 66778888999999999999999999999987654
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 164 LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.+...++.+..++...|++++|...|++..+.
T Consensus 465 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 465 -EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred -CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999874
No 15
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=9.4e-17 Score=120.44 Aligned_cols=211 Identities=15% Similarity=0.125 Sum_probs=174.5
Q ss_pred cccccCHHHHHHHHHHHhhCCC---------------------------------CcCHHHHHHHHHHHHhcCchhHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGL---------------------------------EPDIITYNTIICGYCSLNRLDEAVQ 48 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~ 48 (223)
|+..+++++|..+|+.+.+... +..+.+|..+..+|.-.++++.|++
T Consensus 363 yFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik 442 (638)
T KOG1126|consen 363 YFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIK 442 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHH
Confidence 5666788888888888766421 1147788888899999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC
Q 027412 49 LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (223)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 128 (223)
.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+..+++ +..+|.-+...|.+.++++.|+-.|+++.+.+
T Consensus 443 ~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN- 519 (638)
T KOG1126|consen 443 CFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN- 519 (638)
T ss_pred HHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-
Confidence 99999877422 7789999999999999999999999999887666 67788889999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHH
Q 027412 129 SPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 208 (223)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 208 (223)
|.+......+...+.+.|+.|+|+.+++++...++. |+..--..+..+...+++++|+..++++.+ +.|+..+...+
T Consensus 520 P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~l 596 (638)
T KOG1126|consen 520 PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFAL 596 (638)
T ss_pred ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHH
Confidence 777888888999999999999999999999988774 666666677888899999999999999998 68887766666
Q ss_pred hhh-HhhcCCC
Q 027412 209 ADY-NLQSSGS 218 (223)
Q Consensus 209 ~~~-~~~~~~~ 218 (223)
+.- |-+-|+.
T Consensus 597 lgki~k~~~~~ 607 (638)
T KOG1126|consen 597 LGKIYKRLGNT 607 (638)
T ss_pred HHHHHHHHccc
Confidence 554 4444443
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=6.2e-15 Score=116.71 Aligned_cols=191 Identities=14% Similarity=0.121 Sum_probs=160.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH-
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD- 80 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 80 (223)
+.+.|++++|+..++.+.+....++...+..+...+.+.|++++|...++++.+..+. +...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhh
Confidence 3467889999999998877643344455566678889999999999999999987633 67888889999999999986
Q ss_pred ---HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 027412 81 ---ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHC 157 (223)
Q Consensus 81 ---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (223)
|...+++..+..|. +...+..+...+...|++++|...++++.... +.+...+..+..++.+.|++++|...+++
T Consensus 266 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999998776 78899999999999999999999999999875 56677888899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 158 ALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
+...++. +...+..+..++...|++++|...|++..+.
T Consensus 344 al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 344 LAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9876542 3334455677889999999999999999875
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=9.5e-15 Score=101.77 Aligned_cols=167 Identities=15% Similarity=0.104 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4445555555666666666666666555443 123445555555566666666666666655555443 44455555555
Q ss_pred HHhhCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 027412 107 YFKSQNMKSAFDVYEEMCENNI-SPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE 185 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 185 (223)
+...|++++|...+++...... +.....+..+..++...|++++|...+.+..+..+ .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665554311 12233445555555566666666666665555433 234455555555666666666
Q ss_pred HHHHHHHHHHC
Q 027412 186 AMQLYDSMLRN 196 (223)
Q Consensus 186 a~~~~~~~~~~ 196 (223)
|...+++..+.
T Consensus 188 A~~~~~~~~~~ 198 (234)
T TIGR02521 188 ARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHh
Confidence 66666655553
No 18
>PRK12370 invasion protein regulator; Provisional
Probab=99.72 E-value=1.5e-14 Score=112.68 Aligned_cols=205 Identities=16% Similarity=0.074 Sum_probs=158.1
Q ss_pred cCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh---------cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 027412 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS---------LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (223)
+.+++|+..|++..+..+. +...|..+..++.. .+++++|...+++..+.++. +..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 4578999999999887432 45667666665543 24478999999999988644 7788888989999999
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (223)
++++|...+++..+.+|. +...+..+..++...|++++|...++++.+.+ |.+...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999998876 77788889999999999999999999999875 3344444455556777899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHh-hhHhhcC
Q 027412 157 CALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA-DYNLQSS 216 (223)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~ 216 (223)
++.+...+.++..+..+..++...|++++|...+.++... .|+.......+ ..++..|
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH
Confidence 9876643235666788888899999999999999987663 55544444433 3444444
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=2.7e-16 Score=112.71 Aligned_cols=210 Identities=20% Similarity=0.186 Sum_probs=107.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
..++++.|+..++++...+.. ++..+..++.. ...+++++|.++++...+. .+++..+..++..+.+.++++++.+
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 131 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEE 131 (280)
T ss_dssp ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHH
Confidence 457889999999999877533 56677777777 7888999999998887655 3466667778888889999999999
Q ss_pred HHHHHHhcC-CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 84 MFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
+++.+.... .+.+...|..+...+.+.|++++|...+++..+.. |.|......++..+...|+.+++.+++....+..
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 998876543 24577888888899999999999999999998874 5568888889999999999999888888777654
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-chhhHHHHhhhHhhcCCCccc
Q 027412 163 LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMP-DGLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~ 221 (223)
+.|+..+..+..++...|++++|..++++..+. .| |+.....+..++.+.|..++|
T Consensus 211 -~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 211 -PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------
T ss_pred -cCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 245567788899999999999999999998874 55 556666777777777776654
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=4e-14 Score=98.64 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=161.4
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHH
Confidence 457899999999999998764 335778889999999999999999999999877533 667788899999999999999
Q ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 82 TMMFSKMLEKGPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
.+.+++....... .....+..+..++...|++++|...+++..... +.+...+..+...+...|++++|...+++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999875322 244567778899999999999999999998864 55677889999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 161 NHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
.. ..+...+..++..+...|+.++|..+.+.+..
T Consensus 198 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 198 TY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred hC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 63 35677778888999999999999999888765
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.9e-16 Score=113.53 Aligned_cols=186 Identities=22% Similarity=0.210 Sum_probs=70.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
..+++++|.+++....+. .+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|++++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555544433 2334444555555555555555555555544322 2234445555555555555555555
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
+.+++..+..|. +......++..+...|+.+++..+++...... +.|+..+..+..++...|+.++|..++++..+..
T Consensus 167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 555555555444 44555555555555555555555555554432 3444455555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 163 LLPDVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
+ .|+.....+..++...|+.++|.++..++.
T Consensus 245 p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 P-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-T-HHHHHHHHHHHT----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 3 245555555555555555555555555443
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.68 E-value=5.2e-15 Score=111.04 Aligned_cols=206 Identities=17% Similarity=0.194 Sum_probs=107.7
Q ss_pred ccCHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-------------------------
Q 027412 5 ECHLDAALKLFGQLTDRGLEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL------------------------- 58 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------- 58 (223)
.|++..|+..|++..+.+ |+ ..+|..|...|...+.+++|+..|.+.....+
T Consensus 231 ~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred cchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH
Confidence 455556666666555542 22 44555555555555555555555555443321
Q ss_pred -------CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC
Q 027412 59 -------KP-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (223)
Q Consensus 59 -------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 130 (223)
.| -+..|+.|..++-..|+..+|+..+.+.+...+. .....+.|..+|...|.+++|..+|....+.. +.
T Consensus 309 Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~ 386 (966)
T KOG4626|consen 309 YKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PE 386 (966)
T ss_pred HHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hh
Confidence 11 2344555555555555555555555555554443 44455555555555555555555555555431 22
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh-hHHHHh
Q 027412 131 NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLA 209 (223)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~ 209 (223)
-...++.|...|..+|++++|+..|++.++-.+ .-...|+.+...|...|+.+.|.+.+.+.+. +.|.-. ..+.|.
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-TFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLA 463 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-hHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHH
Confidence 234556666666666666666666666554332 1234566666666666666666666666665 455533 333333
Q ss_pred hhHhhcCC
Q 027412 210 DYNLQSSG 217 (223)
Q Consensus 210 ~~~~~~~~ 217 (223)
..|-.+|+
T Consensus 464 si~kDsGn 471 (966)
T KOG4626|consen 464 SIYKDSGN 471 (966)
T ss_pred HHhhccCC
Confidence 33333333
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=9.7e-14 Score=113.18 Aligned_cols=190 Identities=11% Similarity=-0.003 Sum_probs=133.7
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
..|++++|+..|+++... +|+...+..+...+.+.|+.++|...+++..+..+. +...+..+.......|++++|..
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHH
Confidence 567778888888776554 334445556667777778888888888777765422 33333333344445588888888
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
.+++..+..| +...+..+..++.+.|++++|...+++..... |.+...++.+..++...|++++|+..+++..+..+
T Consensus 598 ~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8887777554 46677777788888888888888888887764 55667777777788888888888888888777655
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCch
Q 027412 164 LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
-+...+..+..++...|++++|...+++..+ +.|+.
T Consensus 675 -~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 675 -DDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 3667777788888888888888888888776 34554
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.67 E-value=9e-14 Score=116.83 Aligned_cols=196 Identities=15% Similarity=0.096 Sum_probs=154.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc-HHHH------------HHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-SITF------------TIL 68 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l 68 (223)
+...|++++|+..|++..+..+ .+..++..+..++.+.|++++|+..|++..+...... ...| ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 3567999999999999988743 3788899999999999999999999999987653321 1111 223
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHH----------
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSIL---------- 138 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------- 138 (223)
...+.+.|++++|+..|++..+..+. +...+..+..++...|++++|++.|+++.+.. +.+...+..+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence 45677899999999999999998775 67788889999999999999999999998764 3334333332
Q ss_pred --------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 027412 139 --------------------------------IDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEA 186 (223)
Q Consensus 139 --------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 186 (223)
...+...|++++|.+.+++..+..+ -+...+..+...+.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 3344567899999999999988765 3677888899999999999999
Q ss_pred HHHHHHHHHCCCCCchh
Q 027412 187 MQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 187 ~~~~~~~~~~~~~p~~~ 203 (223)
...++++.+. .|+..
T Consensus 515 ~~~l~~al~~--~P~~~ 529 (1157)
T PRK11447 515 DALMRRLAQQ--KPNDP 529 (1157)
T ss_pred HHHHHHHHHc--CCCCH
Confidence 9999999874 45443
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.8e-14 Score=100.74 Aligned_cols=189 Identities=15% Similarity=0.170 Sum_probs=161.8
Q ss_pred cccCHHHHHHHHHHHhhCCCC--cCHHHHHHHH-------------------------------HHHHhcCchhHHHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLE--PDIITYNTII-------------------------------CGYCSLNRLDEAVQLF 50 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~-------------------------------~~~~~~~~~~~a~~~~ 50 (223)
...++++|+.+|+++.+..+- -|..+|+.++ +-|+-.++.++|...|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 457899999999999887421 1455565544 3344457789999999
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC
Q 027412 51 EKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (223)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 130 (223)
++..+.++. ...+|+.+++-|...++...|.+-+++..+.+|. |-..|-.|.++|.-.+.+.=|+-.|+++.... |.
T Consensus 354 kRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-Pn 430 (559)
T KOG1155|consen 354 KRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PN 430 (559)
T ss_pred HHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CC
Confidence 999988744 6788999999999999999999999999998876 89999999999999999999999999999874 77
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 131 NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
|...|.+|..+|.+.++.++|++.|.+....|- .+...+..+...+-+.++..+|.+.|++.++.
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999987654 36688999999999999999999999888763
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=2e-13 Score=106.47 Aligned_cols=186 Identities=11% Similarity=0.062 Sum_probs=148.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.+++++|...+++..+.++ .+...+..+..++...|++++|...|+++.+.++. +...+..+..++...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4568999999999998853 36788889999999999999999999999988633 677888899999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL 164 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (223)
+++..+.+|. +...+..++..+...|++++|...++++.....+.+...+..+..++...|++++|...+.++....+
T Consensus 395 ~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~- 472 (553)
T PRK12370 395 INECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI- 472 (553)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-
Confidence 9999998776 44444445556777899999999999988754233556678888999999999999999998766533
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 165 PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 165 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.+....+.+...+...| ++|...++.+.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 24445566666777777 4788878777654
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.65 E-value=1.8e-13 Score=111.61 Aligned_cols=205 Identities=14% Similarity=0.119 Sum_probs=162.9
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.+++++|+..|.+.... .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...
T Consensus 489 ~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 489 DTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred hCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 36788899988888776 355544445556667899999999999998654 44445566778889999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL 164 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (223)
+++..+.++. +...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++.....+
T Consensus 565 l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P- 640 (987)
T PRK09782 565 LQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP- 640 (987)
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 9999987654 4444444445555669999999999999985 46788999999999999999999999999999876
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh-hHHHHhhhHhhcCCCc
Q 027412 165 PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQSSGSQ 219 (223)
Q Consensus 165 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~ 219 (223)
.+...++.+..++...|++++|+..+++..+ ..|+.. .+..+..++...|+.+
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHH
Confidence 4778899999999999999999999999998 466654 5555555666655543
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.8e-13 Score=102.66 Aligned_cols=209 Identities=13% Similarity=0.042 Sum_probs=158.3
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHH--HHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITY--NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
.+.|+++.|...+.++.+. .|+.... ......+...|++++|...++++.+..+. ++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 3568888888888888765 3443322 23366778888888888888888777633 67777788888888888888
Q ss_pred HHHHHHHHHhcCCC-----------------------------------------ccHHHHHHHHHHHHhhCChhHHHHH
Q 027412 81 ATMMFSKMLEKGPK-----------------------------------------ANVVTYSCLIDGYFKSQNMKSAFDV 119 (223)
Q Consensus 81 a~~~~~~~~~~~~~-----------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~ 119 (223)
|.+++..+.+.+.. .++.....+...+...|+.++|...
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88777777654322 1333455667788889999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 027412 120 YEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIM 199 (223)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 199 (223)
+++..+. +++.... ++.+....++.+++.+..+...+..+ -|...+..+...+.+.+++++|.+.|+.+.+ ..
T Consensus 286 L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~ 358 (398)
T PRK10747 286 ILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QR 358 (398)
T ss_pred HHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 9988873 5565332 23334456899999999999888776 4778889999999999999999999999998 58
Q ss_pred CchhhHHHHhhhHhhcCCCccc
Q 027412 200 PDGLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 200 p~~~~~~~l~~~~~~~~~~~~~ 221 (223)
|+..++..+...+.+.|..+++
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHH
Confidence 9999989898888888876654
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.64 E-value=3.3e-13 Score=113.48 Aligned_cols=189 Identities=11% Similarity=0.026 Sum_probs=144.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
...|++++|++.|++..+..+. +...+..+..+|.+.|++++|...++++.+..+. +...+..+...+...++.++|.
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHH
Confidence 4579999999999999887533 5778888999999999999999999998875432 4444433334444455555554
Q ss_pred HHHHHHHh----------------------------------------cCCCccHHHHHHHHHHHHhhCChhHHHHHHHH
Q 027412 83 MMFSKMLE----------------------------------------KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (223)
Q Consensus 83 ~~~~~~~~----------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 122 (223)
..++.+.. ..+ .+...+..+...+.+.|++++|+..|++
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44433211 122 3556677788899999999999999999
Q ss_pred HHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 123 MCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
+.+.. |.+...+..++..+...|++++|.+.++...+..+ .+...+..+..++...|++++|.++++++...
T Consensus 629 al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 629 VLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99875 66788999999999999999999999998876544 35667777888899999999999999999875
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=3.7e-13 Score=93.65 Aligned_cols=189 Identities=15% Similarity=0.200 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP---NSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 81 (223)
.++.++|.++|-+|.+... -+..+.-+|.+.|.+.|..++|+++.+.+.++.--+ -..+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3455666666666655432 244555556666666666666666666555421000 012233344445555555555
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCC---------------------------------------hhHHHHHHHH
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQN---------------------------------------MKSAFDVYEE 122 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------~~~a~~~~~~ 122 (223)
+.+|..+...+. .-......|+..|-...+ .+.|..++++
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 555554443321 123334444444444444 4444444444
Q ss_pred HHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 123 MCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
..+.+ +..+..-..+.+.....|++++|.+.++...+.++.--+.+...|..+|.+.|+.++....+.++.+.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 44433 33333444455555566666666666666665554444455566666666666666666666555554
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.62 E-value=8.5e-13 Score=106.68 Aligned_cols=205 Identities=14% Similarity=0.038 Sum_probs=164.1
Q ss_pred ccccCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCCh
Q 027412 3 IKECHLDAALKLFGQLTDRGLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP---NSITFTILIDAFCKEGRM 78 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 78 (223)
...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+.+|+++.+..... .......+..++.+.|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4568899999999999887532 32 223335778999999999999999987654221 134566677788999999
Q ss_pred hHHHHHHHHHHhcCCC-----------cc---HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 027412 79 DDATMMFSKMLEKGPK-----------AN---VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK 144 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~-----------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (223)
++|..+++.+....+. |+ ...+..+...+...|++++|+..++++.... |.+...+..++..+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 9999999999876431 22 2345667888999999999999999998874 7778899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhH
Q 027412 145 RGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 212 (223)
Q Consensus 145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 212 (223)
.|++++|++.+++.....+ .+...+...+..+...|++++|..+++++++ ..|+......+-+..
T Consensus 406 ~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred cCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999998765 3567778888899999999999999999998 477776666555444
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=4.7e-13 Score=93.15 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=125.6
Q ss_pred hcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHhhCChhH
Q 027412 39 SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA---NVVTYSCLIDGYFKSQNMKS 115 (223)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 115 (223)
-.++.++|.++|-+|.+.... +..+--.|.+.|.+.|..++|+++.+.+..+.--+ -......|..=|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 357899999999999976433 55667789999999999999999999887652111 12356668888999999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHH------------------
Q 027412 116 AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDV----VTYAIL------------------ 173 (223)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l------------------ 173 (223)
|+.+|..+.+.+ ..-......|+..|....+|++|+++-+++.+.+..+.. ..|..+
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998765 455677888888888888888888888877766544321 123333
Q ss_pred ----------------HHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCC
Q 027412 174 ----------------IRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 218 (223)
Q Consensus 174 ----------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 218 (223)
.+.....|++++|.+.++...+.+..--+.+...|..+|.+.|..
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 344455566666666666666554333345555555555555543
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-12 Score=94.83 Aligned_cols=209 Identities=12% Similarity=0.050 Sum_probs=177.2
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
.-.++.++|+..|++..+.+.. ...+|+.+..-|...++...|++-++.+.+.++ .|-..|..|+++|.-.+.+.=|+
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHH
Confidence 3457889999999999988633 677899999999999999999999999998874 48899999999999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN- 161 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 161 (223)
-.|++.....|. |...|.+|..+|.+.++.++|+..|......| ..+...+..+...|-+.++.++|...|++..+.
T Consensus 419 yYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 419 YYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999988776 89999999999999999999999999999877 456689999999999999999999999887652
Q ss_pred ---C-CCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCC
Q 027412 162 ---H-LLP-DVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 217 (223)
Q Consensus 162 ---~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 217 (223)
| ..| .......|...+.+.+++++|..+....... .+...--..|++.+.+...
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREIRKIQA 555 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHHHHhcC
Confidence 2 223 2334455778889999999999888777653 6777777788877766544
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=5e-13 Score=100.69 Aligned_cols=123 Identities=15% Similarity=-0.038 Sum_probs=89.7
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVS---YSILIDGLCKRGLMEEALYAFHCALDNHLLPDV--VTY 170 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 170 (223)
++..+..+...+...|++++|.+.+++..+.. ||... ...........++.+.+.+.++...+..+ -|+ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHH
Confidence 55666777788888889999999998888763 33321 11122222345777888888888777654 355 667
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCccc
Q 027412 171 AILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 171 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 221 (223)
.++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.+++
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 789999999999999999999544444689999999999999888876654
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.61 E-value=1.6e-12 Score=86.54 Aligned_cols=187 Identities=16% Similarity=0.020 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (223)
.+...|.-.|...|+...|..-+++..+..+. +..+|..+...|.+.|+.+.|.+.|++..+..+. +..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 34566777888888888888888888877533 5677888888888888888888888888888776 778888888888
Q ss_pred HhhCChhHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 027412 108 FKSQNMKSAFDVYEEMCENN-ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEA 186 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 186 (223)
+..|++++|...|++....- +..-..+|..+..+..+.|+.+.|.+.|++.++..+. ...+...+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 88888888888888887642 2233567888888888888888888888888877653 445667777888888888888
Q ss_pred HHHHHHHHHCCCCCchhhHHHHhhhHhhcCCC
Q 027412 187 MQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 218 (223)
Q Consensus 187 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 218 (223)
..+++.....+. ++..+....|+.--+.|+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccH
Confidence 888888777654 7777766666655555543
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.60 E-value=3.6e-12 Score=84.85 Aligned_cols=201 Identities=15% Similarity=0.065 Sum_probs=172.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
|.+.|++..|..-+++.++.++. +..+|..+...|.+.|+.+.|.+-|++.....+. +-.+.|.....+|..|.+++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHH
Confidence 67889999999999999998633 6789999999999999999999999999988644 778899999999999999999
Q ss_pred HHHHHHHHhcCC-CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 82 TMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
...|++....-. ..-..+|..+.-+..+.|+.+.|...|++..+.+ +....+...+.....+.|++-.|...++....
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 999999887521 1235688999999999999999999999999875 56677888999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHH
Q 027412 161 NHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 208 (223)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 208 (223)
.+. ++..+....|+.-...|+.+.+-++=..+.+ .-|...-|...
T Consensus 202 ~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 202 RGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred ccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 776 8999999999999999999988887777776 36666655543
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.4e-13 Score=102.56 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=168.8
Q ss_pred CcccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
||.-.++.+.|++.|++..+.+. ....+|+.+..-+....++|.|...|+........ +-.+|..++..|.+.++++.
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhH
Confidence 45667899999999999998742 26889999999999999999999999999755422 45577788999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
|+-.|++....+|. +.+....++..+.+.|+.++|+++++++...+ +-|+..-...+..+...+++++|+..++++++
T Consensus 508 Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 508 AEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 99999999999887 88888889999999999999999999999876 66777777788889999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhh
Q 027412 161 NHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLL 204 (223)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 204 (223)
.-+ .+...+..+...|.+.|+.+.|+.-|.-+.+. .|...-
T Consensus 586 ~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~l--dpkg~~ 626 (638)
T KOG1126|consen 586 LVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDL--DPKGAQ 626 (638)
T ss_pred hCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcC--CCccch
Confidence 644 36678889999999999999999999888874 554433
No 38
>PF13041 PPR_2: PPR repeat family
Probab=99.57 E-value=1.1e-14 Score=75.89 Aligned_cols=50 Identities=46% Similarity=0.785 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhh
Q 027412 165 PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 214 (223)
Q Consensus 165 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 214 (223)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777776653
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=4.1e-11 Score=85.74 Aligned_cols=213 Identities=15% Similarity=0.109 Sum_probs=170.4
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.|+|..|.++..+-.+.+.. ....|..-+.+--..|+.+.+-.++.+..+....++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58999999999887776644 34466667777788899999999999988775566677777777888888999999998
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC----------------------------------
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP---------------------------------- 130 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------- 130 (223)
++++...++. ++........+|.+.|++.....++.++.+.+.-.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888888776 67788888899999999988888888887765422
Q ss_pred -------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------------------------------CHHHHHHH
Q 027412 131 -------NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLP------------------------------DVVTYAIL 173 (223)
Q Consensus 131 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~~~l 173 (223)
++..-..++.-+..+|+.++|.++.++..+.+..| ++..+.++
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL 334 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL 334 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence 23344566777788899999999888877665332 55778899
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCccc
Q 027412 174 IRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 174 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 221 (223)
...|.+.+.|.+|...|+...+ ..|+..+|..+..++.+.|....+
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHH
Confidence 9999999999999999998887 589999999999999988876543
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.54 E-value=4e-11 Score=86.51 Aligned_cols=194 Identities=14% Similarity=0.012 Sum_probs=90.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
+.|++++|+..|++..+..+ .+...|+.+...+...|++++|...|++..+..+. +..++..+..++...|++++|.+
T Consensus 76 ~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~ 153 (296)
T PRK11189 76 SLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQD 153 (296)
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555555555555544431 23445555555555555555555555555444322 33444445555555555555555
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD--- 160 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 160 (223)
.|++..+.++. +.. .......+...+++++|...+++..... +++...+ . ......|+...+ +.+..+.+
T Consensus 154 ~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~ 226 (296)
T PRK11189 154 DLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGAT 226 (296)
T ss_pred HHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCC
Confidence 55555544332 111 1111112223344555555554433221 1111111 1 111223333222 12222221
Q ss_pred CCCC---CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHH
Q 027412 161 NHLL---PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLST 207 (223)
Q Consensus 161 ~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 207 (223)
..+. .....|..+...+...|++++|...|++..+.+ .||..-+..
T Consensus 227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 227 DNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 1100 123568888899999999999999999999853 335444443
No 41
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1.5e-12 Score=94.15 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=97.3
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIR 175 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 175 (223)
+..++..++.+.++--..+.|.+++++......+.+..+||.+|.+-.-.-+ .++..+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 6678888888888888888888888888876668888888888876544322 667788888888889999999998
Q ss_pred HHHhcCCcch----HHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCcc
Q 027412 176 GYCKAGRPTE----AMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 176 ~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 220 (223)
+..+-|+++. |.+++.+|.+-|+.|+..+|..+|..+++.++.+.
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 8888887764 55677888888899998899888888888877643
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=6.7e-13 Score=92.77 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=132.4
Q ss_pred CcccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
||.+.|.+.+|.+.|+...+. .|-+.+|..|..+|.+..+...|+.++.+-.+.- +-++.....+.+.+...++.++
T Consensus 232 CylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 232 CYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHH
Confidence 467888999999999887776 5677889999999999999999999988877552 3355555566777777778888
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
|.++++...+..+. ++....++...|.-.++++.|+.++..+...| ..++..|+.+..+|.-.+++|-++..|++...
T Consensus 309 a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 88888777776554 66666667777777777777777777777777 45567777777777777777777777776664
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 161 NHLLPD--VVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 161 ~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
.--.|+ ...|..+....+..|++..|.+.|+-.+.
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 322222 23455555555555555555555555444
No 43
>PF13041 PPR_2: PPR repeat family
Probab=99.52 E-value=5.3e-14 Score=73.23 Aligned_cols=41 Identities=39% Similarity=0.757 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILI 139 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 139 (223)
+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.51 E-value=2.6e-11 Score=97.45 Aligned_cols=202 Identities=11% Similarity=0.079 Sum_probs=167.5
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHhcC
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-----LKPNSITFTILIDAFCKEG 76 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 76 (223)
+...|++.++++.|+.+...+.+....+-..+.++|...+++++|..+|..+.... ..++......|.-++...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 55778999999999999988877677788999999999999999999999997643 1234444678899999999
Q ss_pred ChhHHHHHHHHHHhcCC-----------Ccc--H-HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 77 RMDDATMMFSKMLEKGP-----------KAN--V-VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
++++|..+++++.+..| .|+ - ..+..++..+...|+..+|++.++++.... |-|......+...+
T Consensus 382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~ 460 (822)
T PRK14574 382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIY 460 (822)
T ss_pred cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999987433 122 2 234556788899999999999999998875 88999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHH
Q 027412 143 CKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLST 207 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 207 (223)
...|.+.+|.+.++......+ -+..+....+.++...+++++|..+.+.+... .|+......
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAP-RSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 999999999999988776654 46778888899999999999999999999874 666554443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=1.2e-10 Score=88.02 Aligned_cols=189 Identities=12% Similarity=0.109 Sum_probs=123.4
Q ss_pred cccCHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
..|+++.|.+.+.+..+.. |+ ...+-....+....|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4688999999998877653 33 33445556777888999999999998876543333334444577788889999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHH-HHHHHH---HhcCCHHHHHHHHHHH
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYS-ILIDGL---CKRGLMEEALYAFHCA 158 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 158 (223)
..++.+.+..|. ++..+..+...+...|+++++.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999888776 7778888899999999999999988888877533 222221 111111 2222222223333333
Q ss_pred HhCCCC---CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 159 LDNHLL---PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 159 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.+..+. .++..+..++..+...|++++|.+++++..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 332221 25566666666666666666666666666663
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=9.5e-11 Score=88.10 Aligned_cols=205 Identities=15% Similarity=0.122 Sum_probs=143.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHH-HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCChhH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIIT-YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI--TFTILIDAFCKEGRMDD 80 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 80 (223)
-.|+++.|.+.+....+.. +++.. +........+.|+++.|...+.++.+. .|+.. ........+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888766642 23333 334455558999999999999999876 44443 22234678889999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC------------------------------
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP------------------------------ 130 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------ 130 (223)
|...++++.+..|. ++.....+...|.+.|++++|..++..+.+.+..+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999877 78899999999999999999998888887654221
Q ss_pred -----------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 027412 131 -----------NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIM 199 (223)
Q Consensus 131 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 199 (223)
++.....+...+...|+.++|.+.+++..+.. |+.... ++.+....++.+++.+..+...+. .
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~ 324 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--H 324 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhh--C
Confidence 22333455666677778888888777777643 344322 223333457777777777777764 5
Q ss_pred Cchhh-HHHHhhhHhhcCCCc
Q 027412 200 PDGLL-LSTLADYNLQSSGSQ 219 (223)
Q Consensus 200 p~~~~-~~~l~~~~~~~~~~~ 219 (223)
|+... ...+-..|.+.+.+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHH
Confidence 55544 445555566655544
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.46 E-value=6.2e-11 Score=95.35 Aligned_cols=184 Identities=15% Similarity=0.066 Sum_probs=144.6
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
++.|+++.|++.|++..+..+.-....+ .++..+...|+.++|+.++++..... .........+...+...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5789999999999999887433112344 88888889999999999999998221 223444444567888899999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
++++++.+..|. ++..+..++..+...++.++|+..++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999999887 6788888889999999999999999999875 4555555555555555667767999999999887
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 027412 163 LLPDVVTYAILIRGYCKAGRPTEAMQLYDS 192 (223)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 192 (223)
+ .+...+..+..++.+.|-...|.++..+
T Consensus 200 P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 200 P-TSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred C-CCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 5 4778888899999999999888877765
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.46 E-value=1.6e-10 Score=93.66 Aligned_cols=110 Identities=13% Similarity=0.100 Sum_probs=53.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
+.|++++|+++|++..+.. +.+...+..++.++...|++++|...++++.+..+ .+.. +..+..++...|+.++|+.
T Consensus 61 ~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHH
Confidence 3455555555555554442 22344444555555555555555555555544421 1333 4445555555555555555
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHH
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 117 (223)
.++++.+..|. +...+..+..++...+..++|+
T Consensus 138 ~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 138 AMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHH
Confidence 55555555444 3444444444444444444333
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.4e-11 Score=87.97 Aligned_cols=206 Identities=15% Similarity=0.096 Sum_probs=168.1
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
-.|++.+|+..|.+....+.. =...|..+...|+-.|..++|+..+..+.+.=.. ....+--+..-|.+.++.+.|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHH
Confidence 347889999999887765422 2457889999999999999999988887654211 22223336667888999999999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC----C--CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----N--ISPNIVSYSILIDGLCKRGLMEEALYAFHC 157 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (223)
+|.+.....|. |+...+-+.-.....+.+.+|..+|+..... + .+.-..+++.|..+|.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 99999988776 8999999999999999999999999988722 0 111345689999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhc
Q 027412 158 ALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 215 (223)
.+...+ .+..++..+.-.|...|+++.|...|.+.+- +.|+..+...+++.++..
T Consensus 481 aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 481 ALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 998766 5899999999999999999999999999886 799998888888877665
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=9.7e-11 Score=85.77 Aligned_cols=204 Identities=19% Similarity=0.174 Sum_probs=112.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
+|++++|.+.|++....+..- ......+.-.+-..|++++|++.|-++...- ..+..+...+...|-...+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 455666666665555432111 1122222233445556666666555543221 22444555555566666666666666
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL 164 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (223)
+.+....-| .|+.....|...|-+.|+-..|++++-.-.+- +|-+..+...|...|....-+++++..|++..- +.
T Consensus 581 ~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 655544422 25666666666666666666666655443332 355566666666666666667777777766543 34
Q ss_pred CCHHHHHHHHHH-HHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhc
Q 027412 165 PDVVTYAILIRG-YCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 165 ~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 215 (223)
|+..-|..++.. +.+.|++++|+.+|+...+. ++-|.....-|++.+...
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dl 707 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccc
Confidence 677777665544 34567777777777776653 445555555555555433
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=5.7e-11 Score=89.96 Aligned_cols=219 Identities=21% Similarity=0.174 Sum_probs=160.0
Q ss_pred cccccCHHHHHHHHHHHhhC-----CC-CcCHH-HHHHHHHHHHhcCchhHHHHHHHHHHhC-----CC-CC-cHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR-----GL-EPDII-TYNTIICGYCSLNRLDEAVQLFEKLTCV-----QL-KP-NSITFTI 67 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~ 67 (223)
|...|+++.|+.+++...+. |. -|... ..+.+...|...+++++|..+|+++... |. .| -..+++.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 67789999999999987764 21 12333 3445778999999999999999998653 21 12 2357888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc-----CC-Ccc-HHHHHHHHHHHHhhCChhHHHHHHHHHHHC---CCCC----Chh
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEK-----GP-KAN-VVTYSCLIDGYFKSQNMKSAFDVYEEMCEN---NISP----NIV 133 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~ 133 (223)
|..+|.+.|++++|..++++.... +. .|. ...++.+...+...+++++|..+++...+. -..+ -..
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 999999999999999988876543 11 112 235677888899999999999999877643 1112 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC----CC-CCc
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDN----HL--LP-DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN----GI-MPD 201 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~ 201 (223)
+++.+...|...|++++|.+++++++.. +. .+ ....++.+...|.+.+++.+|.++|.+...- |. .|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 8899999999999999999999988742 11 12 2356788999999999999999999876532 32 233
Q ss_pred -hhhHHHHhhhHhhcCCCcc
Q 027412 202 -GLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 202 -~~~~~~l~~~~~~~~~~~~ 220 (223)
..+|..|...|-+.|+.+.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred hHHHHHHHHHHHHHcccHHH
Confidence 3577778888877776543
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=6e-10 Score=79.93 Aligned_cols=190 Identities=18% Similarity=0.177 Sum_probs=122.4
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH-------HHHHHHHH-----
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI-------TFTILIDA----- 71 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~----- 71 (223)
..|+++.|..-.+.+.+.+.. ++.......++|.+.|++.....++..+.+.+.-.++. +|..+++-
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 456677777777777766533 55667777777777777777777777776665333321 33333332
Q ss_pred -----------------------------HHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHH
Q 027412 72 -----------------------------FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (223)
Q Consensus 72 -----------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 122 (223)
+.++|+.++|.++..+..+++..|+ -.....+.+.+++..-.+..++
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHH
Confidence 3334444444444444444433322 1111223333444444444443
Q ss_pred HHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc
Q 027412 123 MCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
-.+. .+.++..+..+...|.+.+.|.+|...|+...+.+ |+..+|+.+..++.+.|+..+|.+..++....-..|+
T Consensus 320 ~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 320 WLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 3333 24466788999999999999999999999887764 7999999999999999999999999998875444444
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=2e-10 Score=84.20 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=111.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
..|++++|+++|-++...- ..+..+...+...|-...+..+|++++.+.... ++.|+.....|...|-+.|+-..|.+
T Consensus 536 ~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhh
Confidence 3466777777776655431 225566666667777777777777777665533 34466666777777777777777766
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhCC
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC-KRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~ 162 (223)
.+-+.-+- .+.+..+..-|..-|....-+++++.+|++..- +.|+..-|..++..|. +.|++.+|+.+|+...+.
T Consensus 614 ~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk- 689 (840)
T KOG2003|consen 614 CHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK- 689 (840)
T ss_pred hhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-
Confidence 65444333 223566666666666666667777777776655 4677777766665544 457777777777666543
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 163 LLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
++.|......|++.+...|- .++.++-+++
T Consensus 690 fpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred CccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 33466666666666666653 2344444333
No 54
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.3e-10 Score=84.38 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=62.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH--
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA-- 81 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-- 81 (223)
+-...+.|.+++++......+.+..+||.+|.+-+-. ...+++.+|......||..|+|.++.+..+.|+++.|
T Consensus 219 K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~ 294 (625)
T KOG4422|consen 219 KFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK 294 (625)
T ss_pred HHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH
Confidence 3344556666666655554455666666665543322 2245556666666666666666666666666655443
Q ss_pred --HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhH
Q 027412 82 --TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115 (223)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (223)
.+++.+|.+.|+.|...+|..++..+.+.+++.+
T Consensus 295 aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 295 AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 3455566666666666666666666666655533
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=4.6e-11 Score=83.80 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=147.0
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 027412 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (223)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (223)
-+.+..+|.+.|-+.+|.+.++..... .|-+.||-.|-+.|.+..+++.|+.++.+-.+.-|. ++....-..+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHH
Confidence 368889999999999999999998876 567788888999999999999999999998886444 66666678899999
Q ss_pred hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 027412 110 SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQL 189 (223)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 189 (223)
.++.++|.++++...+.. +.++.....+...|.-.++++-|+..|+++++.|. .++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999999875 77888888899999999999999999999999998 5899999999999999999999999
Q ss_pred HHHHHHCCCCCc
Q 027412 190 YDSMLRNGIMPD 201 (223)
Q Consensus 190 ~~~~~~~~~~p~ 201 (223)
|.+....--.|+
T Consensus 381 f~RAlstat~~~ 392 (478)
T KOG1129|consen 381 FQRALSTATQPG 392 (478)
T ss_pred HHHHHhhccCcc
Confidence 998886533344
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=1.3e-09 Score=78.69 Aligned_cols=154 Identities=15% Similarity=0.044 Sum_probs=94.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+...|++++|+..|++..+..+. +..++..+..++...|++++|.+.+++..+..+. +. ........+...+++++|
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A 184 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQA 184 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHH
Confidence 34678888888888888776422 4667777888888888888888888888776432 22 112222233445678888
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC---CC---CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN---NI---SPNIVSYSILIDGLCKRGLMEEALYAF 155 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (223)
...|.+...... |+...+ .......|+...+ ..++.+.+. .. +....+|..+...+.+.|++++|...|
T Consensus 185 ~~~l~~~~~~~~-~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 185 KENLKQRYEKLD-KEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred HHHHHHHHhhCC-ccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888866554322 222222 2223334555443 244444321 10 123457788888888888888888888
Q ss_pred HHHHhCCC
Q 027412 156 HCALDNHL 163 (223)
Q Consensus 156 ~~~~~~~~ 163 (223)
++..+.++
T Consensus 260 ~~Al~~~~ 267 (296)
T PRK11189 260 KLALANNV 267 (296)
T ss_pred HHHHHhCC
Confidence 88887665
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.36 E-value=1e-09 Score=76.89 Aligned_cols=170 Identities=17% Similarity=0.131 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC-C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccH--HHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-P-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV--VTYS 101 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 101 (223)
....+..+...+...|++++|...++++....+. | ...++..+..++...|++++|...++++.+..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4667888888899999999999999998876432 1 1246677889999999999999999999987664222 2455
Q ss_pred HHHHHHHhh--------CChhHHHHHHHHHHHCCCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 027412 102 CLIDGYFKS--------QNMKSAFDVYEEMCENNISPNIVSY-----------------SILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 102 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~~ 156 (223)
.+..++... |++++|.+.++.+.... +.+...+ ..+...+.+.|++++|...++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 566666654 78899999999998763 2222222 245667888999999999999
Q ss_pred HHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 157 CALDNHLL--PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 157 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
...+..+. .....+..+..++...|++++|..+++.+...
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99876431 24578899999999999999999999988764
No 58
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.36 E-value=1.1e-09 Score=74.23 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=125.4
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCCh
Q 027412 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (223)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (223)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4578888998887665543321 11 0122356778888888888888777 899999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 027412 114 KSAFDVYEEMCENNISPNIVSYSILIDGL-CKRGL--MEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLY 190 (223)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 190 (223)
++|...|++..+.+ +.+...+..+..++ ...|+ .++|.+++++..+.++ .+...+..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999875 66788888888864 67677 5999999999998877 37888999999999999999999999
Q ss_pred HHHHHCCCCCchhhHHHHhhh
Q 027412 191 DSMLRNGIMPDGLLLSTLADY 211 (223)
Q Consensus 191 ~~~~~~~~~p~~~~~~~l~~~ 211 (223)
+++.+. ..|+..-+..+ ++
T Consensus 168 ~~aL~l-~~~~~~r~~~i-~~ 186 (198)
T PRK10370 168 QKVLDL-NSPRVNRTQLV-ES 186 (198)
T ss_pred HHHHhh-CCCCccHHHHH-HH
Confidence 999885 34554444333 44
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.7e-10 Score=83.87 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=113.9
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.|+.-.|..-|+..+..... +...|..+..+|....+.++....|+...+.++. ++.+|..-.+.+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 56777777778877776433 2333777777788888888888888888777644 666676677777777788888888
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
|++..+.+|. +...|-.+.-+..+.+.+++++..|++.++. +|..+..|+.....+..++++++|.+.|+..++.
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888777666 6677777777777778888888888887765 5666778888888888888888888888877654
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=4.8e-10 Score=83.93 Aligned_cols=190 Identities=18% Similarity=0.128 Sum_probs=154.7
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.++|++.+|.-.|+..++..+. +..+|..|...-...++-..|+..+.+..+..+. +..+.-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 46789999999999999888533 6889999999999999999999999998887643 667777777777776666666
Q ss_pred HHHHHHHHhc------------------------------------------CCCccHHHHHHHHHHHHhhCChhHHHHH
Q 027412 82 TMMFSKMLEK------------------------------------------GPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (223)
Q Consensus 82 ~~~~~~~~~~------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 119 (223)
...++..+.. +..+|+.....|...|...|++++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 6666544321 1124677788899999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 120 YEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
|+.++... |.|...||-|...+++..+.++|+..|.++++..+. -+.+...|.-+|...|.+++|...|-..+.
T Consensus 453 f~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999875 677889999999999999999999999999987642 345677788899999999999999877663
No 61
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=2.1e-09 Score=84.34 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=76.3
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.|++++|..++.++++..+ .....|.+|..+|-..|+.+++...+-.+...++. |...|..+.....+.|++.+|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHH
Confidence 4999999999999988753 36778999999999999988888777666544433 557777777777777777777777
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 123 (223)
|.+.++..|. +...+-.-+..|-+.|+...|...|.++
T Consensus 230 y~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 230 YSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 7666665443 3332222334444444444444444333
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=4.4e-11 Score=93.49 Aligned_cols=197 Identities=14% Similarity=0.194 Sum_probs=134.7
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC------------------------CCCcHHHHHHH
Q 027412 13 KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ------------------------LKPNSITFTIL 68 (223)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~~~l 68 (223)
.++-.+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-.. -.|.+.+|..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 34566777899999999999999999999999887 766664321 13566799999
Q ss_pred HHHHHhcCChhH---HHHHHHHHHh----cCCC-----------------ccHHHHHHHHHHHHhhCChhHHHHHH----
Q 027412 69 IDAFCKEGRMDD---ATMMFSKMLE----KGPK-----------------ANVVTYSCLIDGYFKSQNMKSAFDVY---- 120 (223)
Q Consensus 69 ~~~~~~~~~~~~---a~~~~~~~~~----~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~~~~---- 120 (223)
..+|...||... +.+.+..+.. .|.. ||..+ .+....-.|-++.+.+++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCC
Confidence 999999998654 2222222211 1211 11110 111111122222222222
Q ss_pred ------------HHH-------------HHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 027412 121 ------------EEM-------------CENNI-SPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILI 174 (223)
Q Consensus 121 ------------~~~-------------~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 174 (223)
+++ .+... .|++.+|..++..-.-.|+.+.|..++.+|.+.|+.....-|..++
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 111 11111 4788899999999999999999999999999999977777777776
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcC
Q 027412 175 RGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 216 (223)
Q Consensus 175 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 216 (223)
.+ .++..-+..+++-|.+.|+.|+..|+..-+-.+..+|
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 55 7888888899999999999999999987777766643
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=9.8e-10 Score=83.41 Aligned_cols=211 Identities=19% Similarity=0.148 Sum_probs=154.6
Q ss_pred cccccCHHHHHHHHHHHhhC-----CCC-c-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhC-----C-CCCcH-HHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR-----GLE-P-DIITYNTIICGYCSLNRLDEAVQLFEKLTCV-----Q-LKPNS-ITFTI 67 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~ 67 (223)
|...+++++|..+|+++... |.. | -..+++.|...|.+.|++++|...+++..+. + ..|.+ ..++.
T Consensus 251 y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 45678899999999988653 221 1 2456888889999999999998888877542 1 12222 34677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc---CCCc----cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC-------CCCChh
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEK---GPKA----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-------ISPNIV 133 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~ 133 (223)
+...+...+++++|..++.+..+. -+.+ -..+++.|...|...|++++|.+++++++... ......
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 888888999999999999877653 1111 24689999999999999999999999987531 122245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-C-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC------CCCCc
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALD----NHLL-P-DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN------GIMPD 201 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p~ 201 (223)
.++.+...|.+.+.+.+|.++|.+... .|+. | ...+|..|...|...|+++.|.++.+.+... +..|+
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 778899999999999999999887653 2321 2 3568999999999999999999999887622 23455
Q ss_pred hhhHHHHhhhH
Q 027412 202 GLLLSTLADYN 212 (223)
Q Consensus 202 ~~~~~~l~~~~ 212 (223)
..........+
T Consensus 491 ~~~~~~~~~~~ 501 (508)
T KOG1840|consen 491 VEDEKLRLADL 501 (508)
T ss_pred hhHHHHhhhHH
Confidence 55544444433
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=5.6e-10 Score=82.23 Aligned_cols=187 Identities=18% Similarity=0.187 Sum_probs=152.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
|....+-++....|+...+.+.. ++.+|..-.++..-.+++++|..=|++..+..+. +...|-.+.-+..+.+.++++
T Consensus 370 y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 370 YADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHH
Confidence 55677888889999998887644 6778888888888899999999999999887643 667777777777889999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-------hh--HHHHHHHHHHhcCCHHHHH
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IV--SYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~--~~~~l~~~~~~~~~~~~a~ 152 (223)
...|++..++-|. .+..|+....++...++++.|.+.|+..++. .|+ .. +...++. +.-.+++..|.
T Consensus 448 m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~ 523 (606)
T KOG0547|consen 448 MKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchhhhHHHHH
Confidence 9999999988665 7899999999999999999999999999874 232 11 1122222 22348999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 153 YAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
.++.+..+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 524 ~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 524 NLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999998774 667899999999999999999999998765
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.28 E-value=2.1e-09 Score=75.28 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=123.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCC-c-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHhc--
Q 027412 2 LIKECHLDAALKLFGQLTDRGLE-P-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS--ITFTILIDAFCKE-- 75 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-- 75 (223)
+.+.|+++.|+..|+++...... | ...++..+..++...|++++|...++++.+..+.... .++..+..++.+.
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~ 122 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID 122 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence 45789999999999999876322 1 1246788899999999999999999999876532221 2566666777654
Q ss_pred ------CChhHHHHHHHHHHhcCCCccHHHH-----------------HHHHHHHHhhCChhHHHHHHHHHHHCC--CCC
Q 027412 76 ------GRMDDATMMFSKMLEKGPKANVVTY-----------------SCLIDGYFKSQNMKSAFDVYEEMCENN--ISP 130 (223)
Q Consensus 76 ------~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 130 (223)
|++++|.+.++.+....+. +...+ ..+...+.+.|++++|...++.+.+.. -+.
T Consensus 123 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 123 RVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 7899999999999987665 32222 235667888999999999999998762 123
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 131 NIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
....+..++.++...|++++|...++.+....
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45788999999999999999999998887643
No 66
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.28 E-value=1.3e-09 Score=73.82 Aligned_cols=154 Identities=13% Similarity=0.177 Sum_probs=119.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
|...|+++.+....+.+... . ..+...++.+++...+++..+.+ +.+...|..+...|...|++++|
T Consensus 26 Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 26 YLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 56677877765444332211 1 01223667788888888887776 34888999999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHH-HhhCC--hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGY-FKSQN--MKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
...|++..+..+. +...+..+..++ ...|+ .++|..++++..+.+ +.+..++..+...+.+.|++++|...|+++
T Consensus 93 ~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998876 888888888864 67777 599999999999886 668889999999999999999999999999
Q ss_pred HhCCCCCCHHHHH
Q 027412 159 LDNHLLPDVVTYA 171 (223)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (223)
.+..+ |+..-+.
T Consensus 171 L~l~~-~~~~r~~ 182 (198)
T PRK10370 171 LDLNS-PRVNRTQ 182 (198)
T ss_pred HhhCC-CCccHHH
Confidence 88765 4444333
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.28 E-value=2.1e-09 Score=69.12 Aligned_cols=94 Identities=17% Similarity=0.046 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
.+...+.+.|++++|...|+......+. +...|..+..++...|++++|...|+.....+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3444555555555555555555555443 45555555555555555555555555555543 444555555555555555
Q ss_pred CHHHHHHHHHHHHhCC
Q 027412 147 LMEEALYAFHCALDNH 162 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~ 162 (223)
++++|...|+...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 5555555555555443
No 68
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.26 E-value=7.2e-09 Score=70.67 Aligned_cols=165 Identities=15% Similarity=0.050 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
|..+ ..+...+...|+-+....+..+..... ..|.......+....+.|++..|+..+++.....++ |..+|+.+..
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHH
Confidence 4444 666777778888888888877765332 336667777899999999999999999999988765 9999999999
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE 185 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 185 (223)
+|.+.|+.+.|..-|.+..+.. +.++..++.+.-.+.-.|+++.|..++......+. -+...-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999999874 56778899999999999999999999999877654 477788889999999999999
Q ss_pred HHHHHHHHHH
Q 027412 186 AMQLYDSMLR 195 (223)
Q Consensus 186 a~~~~~~~~~ 195 (223)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9988766543
No 69
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.26 E-value=2e-09 Score=69.24 Aligned_cols=124 Identities=11% Similarity=-0.039 Sum_probs=102.3
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 027412 12 LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 91 (223)
..+|++..+. .|+ .+..+...+...|++++|...|+......+ .+..++..+..++...|++++|...|++....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3566666665 333 355678889999999999999999988763 37889999999999999999999999999998
Q ss_pred CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 92 GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
++. +..++..+..++...|++++|...|+...+.. +.+...+.....+.
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 876 88999999999999999999999999999864 44555555544443
No 70
>PLN02789 farnesyltranstransferase
Probab=99.25 E-value=2.2e-08 Score=72.71 Aligned_cols=207 Identities=14% Similarity=0.037 Sum_probs=155.2
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh--h
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM--D 79 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 79 (223)
...+..++|+.+.+++++..+. +..+|+.-..++...| ++++++..++++.+.+++ +..+|+.....+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 3456778888888888876422 4556776666777777 679999999999887654 666777666666666653 6
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---CCH----HHHH
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR---GLM----EEAL 152 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~ 152 (223)
++..+++++.+.+++ +..+|+....++...|+++++++.++++++.+ +.+..+|+....++.+. |.. ++..
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 788999999999887 89999999999999999999999999999887 66777888777666554 222 4677
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhc
Q 027412 153 YAFHCALDNHLLPDVVTYAILIRGYCKA----GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 215 (223)
....+++...+ -|...|+.+...+... +...+|...+.+..+.+ ..+...+..|++.|+..
T Consensus 204 ~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 204 KYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 77777777766 4777888888887773 44567888888877632 33456677778887753
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.21 E-value=8.1e-09 Score=81.88 Aligned_cols=204 Identities=14% Similarity=0.141 Sum_probs=125.8
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---cCChhH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK---EGRMDD 80 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 80 (223)
..|++..|+.+|..+....+.-.+.....+..++.+.|+.+.|...|.+..+.++ .++.++..|.-.-.. ...+..
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHH
Confidence 3466666777776654432211112223344556666666677666666665542 133333322222221 223455
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI--SPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
+..++...-..+.. ++...+.|...|.-.|+++.++.+...+..... ..-...|..+.++|-..|++++|...|...
T Consensus 255 ~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 55666555555544 777788888888888888888888887775431 122345788888888888888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhh
Q 027412 159 LDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 211 (223)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 211 (223)
...........+..+.+.+...|+.+.+...|+...+. .|+..-...++.+
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGC 384 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHh
Confidence 76554323455667788888888888888888888874 5665444444433
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.21 E-value=2.4e-09 Score=68.27 Aligned_cols=97 Identities=21% Similarity=0.200 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
.....+...+...|++++|.+.++.....++. +...+..+..++...|++++|...++.....+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33444555555555555555555555554443 44555555555555555555555555555443 34445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 027412 143 CKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~ 161 (223)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 73
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.20 E-value=1.1e-08 Score=83.90 Aligned_cols=195 Identities=12% Similarity=0.098 Sum_probs=156.7
Q ss_pred ccccCHHHHHHHHHHHhhC-CCCc---CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 3 IKECHLDAALKLFGQLTDR-GLEP---DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
+..++++.|++++++++.. ++.- -...|.++++.-...|.-+...++|+++.+.. .....|..|...|.+.+.+
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~ 1546 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKN 1546 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcc
Confidence 4567889999999988753 1111 24567777777777788888899999988652 2345678899999999999
Q ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 027412 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--NIVSYSILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (223)
++|.++++.|.++-- .....|...+..+.+.++-++|..++.++.+. +|- ......-.+..-.+.|+.+.+..+|+
T Consensus 1547 ~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1547 DEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred hhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence 999999999998743 37789999999999999999999999998874 222 34556667777789999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCch
Q 027412 157 CALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
..+...++ -...|+.+++.-.++|+.+.++.+|++....++.|..
T Consensus 1625 gll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1625 GLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 98887653 5678999999999999999999999999998877764
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.19 E-value=1.4e-08 Score=80.63 Aligned_cols=145 Identities=10% Similarity=0.089 Sum_probs=108.1
Q ss_pred CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHH
Q 027412 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (223)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (223)
..+...+..|..+..+.|.+++|..+++...+..+. +......+...+.+.+++++|...+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 445777788888888888888888888888776433 4556667778888888888888888888887776 77777778
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 027412 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAI 172 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 172 (223)
..++...|++++|..+|+++...+ +.+..++..+...+...|+.++|...|++..+..- +....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHH
Confidence 888888888888888888887743 45577888888888888888888888888776432 34444443
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=6e-08 Score=74.58 Aligned_cols=214 Identities=19% Similarity=0.149 Sum_probs=133.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-----C
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE-----G 76 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 76 (223)
+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.++. +..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccc
Confidence 34678999999999775544 2323556677788899999999999999999888643 555555555554222 2
Q ss_pred ChhHHHHHHHHHHhcCCCc-------------------------------cHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 77 RMDDATMMFSKMLEKGPKA-------------------------------NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
+.+....+++++...-|.. -+.+|+.+-..|......+-...++.....
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~ 171 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVN 171 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 3555566666654432210 012334343444433333334444444332
Q ss_pred C----C----------CCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 027412 126 N----N----------ISPNI--VSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQL 189 (223)
Q Consensus 126 ~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 189 (223)
. + -+|+. .++..+.+.|-..|++++|++++++.++..+. .+..|..-.+.+.+.|++++|.+.
T Consensus 172 ~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 172 SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1 1 12333 24466677788888888888888888887642 477888888888888888888888
Q ss_pred HHHHHHCCCCC-chhhHHHHhhhHhhcCCCcc
Q 027412 190 YDSMLRNGIMP-DGLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 190 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 220 (223)
++...+. .+ |...-+.....+.+.|..++
T Consensus 251 ~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 251 MDEAREL--DLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HHHHHhC--ChhhHHHHHHHHHHHHHCCCHHH
Confidence 8888774 33 33444455566666665443
No 76
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.1e-09 Score=84.16 Aligned_cols=188 Identities=15% Similarity=0.118 Sum_probs=114.9
Q ss_pred cCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHh----------
Q 027412 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCK---------- 74 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---------- 74 (223)
+++.+|...++...... ..++.++..+...+.+...|..|.+-|+.....- ..+|+.+.-.|.+.|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 45555666666655443 2245555555556666666666666555443321 12355555555554432
Q ss_pred --cCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 027412 75 --EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 75 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
.+..++|+++|.+.++.+|. |...-|-+.-+++..|++.+|..+|.+..+.. .....+|-.+..+|..+|++-.|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHH
Confidence 23356677777777766665 66666777777777777777777777776653 334556777777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 153 YAFHCALDN-HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 153 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
++|+...+. ...-++.+...|.+++.+.|.+.+|.+.+......
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 777765543 33345666777777777777777777777666653
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=3.5e-09 Score=75.78 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=91.7
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----
Q 027412 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK---- 109 (223)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 109 (223)
..++...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+. | .+...++.++..
T Consensus 109 A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e--D-~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE--D-SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC--C-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--c-HHHHHHHHHHHHHHhC
Confidence 34555567777777666532 2455556667777777777777777777766432 2 222223333322
Q ss_pred hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc-chHHH
Q 027412 110 SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRP-TEAMQ 188 (223)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~ 188 (223)
.+.+++|..+|+++.+. .++++.+.+.++.+....|++++|.+++.+..+.++ -++.+...++.+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHH
Confidence 23577777777776554 456777777777777777777777777777766554 3566666677776777766 45666
Q ss_pred HHHHHHH
Q 027412 189 LYDSMLR 195 (223)
Q Consensus 189 ~~~~~~~ 195 (223)
++.++..
T Consensus 258 ~l~qL~~ 264 (290)
T PF04733_consen 258 YLSQLKQ 264 (290)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 6666665
No 78
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.17 E-value=3.5e-08 Score=75.60 Aligned_cols=203 Identities=15% Similarity=0.076 Sum_probs=155.8
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
..|++..|+.++....+.... +...|..-+..-....+++.|..+|.+.... .|+..+|.--+..-.-.++.++|.+
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 458888888888888877533 6778888888888888888888888888764 5677777666666666788888888
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
++++.++.-+. -...|-.+...+-+.++.+.|...|..-.+. +|.....|-.+...--+.|.+-+|..++++.+-.++
T Consensus 673 llEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 88888776443 5567888888888888888888888776655 466667778888877888899999999998887776
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHh
Q 027412 164 LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 213 (223)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 213 (223)
.+...|...++.=.+.|..++|..++.+.++. ++-+...|..-|...-
T Consensus 751 -k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 751 -KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred -CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 47788888999999999999999888888765 3444445554444433
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=6.3e-08 Score=72.09 Aligned_cols=188 Identities=13% Similarity=0.019 Sum_probs=125.2
Q ss_pred ccCHHHHHHHHHHHhhCCC-CcCH-HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCh
Q 027412 5 ECHLDAALKLFGQLTDRGL-EPDI-ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EGRM 78 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 78 (223)
.|+.+.+...+....+... .++. .........+...|++++|.+.+++..+..+. +...+.. ...+.. .+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~~~~~ 96 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDFSGMR 96 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhcccccCc
Confidence 3556666666666544321 2222 22333345567789999999999998876433 4444442 222222 3455
Q ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
..+.+.+...... ..........+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.
T Consensus 97 ~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 97 DHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred hhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5555555542121 22234455567778889999999999999999875 666778888899999999999999999988
Q ss_pred HhCCCC-CC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 159 LDNHLL-PD--VVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 159 ~~~~~~-~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
...... |+ ...|..+...+...|++++|..++++....
T Consensus 175 l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 175 RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 765432 22 234567888899999999999999998643
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.17 E-value=3.8e-08 Score=78.32 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=122.6
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 027412 59 KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSIL 138 (223)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 138 (223)
..++..+..|.....+.|.+++|+.+++...+..|. +......++.++.+.+++++|....++....+ +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 446888899999999999999999999999998877 78888889999999999999999999999876 6777888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 139 IDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
..++...|++++|..+|+++...++ -+..++..+..++...|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998554 35789999999999999999999999999876
No 81
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.16 E-value=2e-08 Score=79.04 Aligned_cols=185 Identities=16% Similarity=0.103 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (223)
..-.........|+.++|.+++.++++..+. ....|..|...|-+.|+.+++...+-.....++. |...|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 3334444455569999999999999987643 7788999999999999999999988777666666 7799999999999
Q ss_pred hhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCcc
Q 027412 109 KSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVV----TYAILIRGYCKAGRPT 184 (223)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 184 (223)
+.|++++|.-+|.++++.. |++...+-.-...|.+.|+...|...|.++....+..+.. ....+++.+...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999986 7777788888899999999999999999999876533333 3344567788888889
Q ss_pred hHHHHHHHHHHC-CCCCchhhHHHHhhhHhhcC
Q 027412 185 EAMQLYDSMLRN-GIMPDGLLLSTLADYNLQSS 216 (223)
Q Consensus 185 ~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~ 216 (223)
.|.+.++..... +-..+..+++.++..+.+..
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~ 330 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNK 330 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhH
Confidence 999999888763 22445556666666665543
No 82
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.15 E-value=1.1e-08 Score=69.84 Aligned_cols=132 Identities=16% Similarity=0.065 Sum_probs=117.2
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
.+.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|+.+.|..-|.+..+..+. ++...+.+.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlg 175 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLG 175 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHH
Confidence 355666778899999999999999999998765 569999999999999999999999999999998666 788899999
Q ss_pred HHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 105 DGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
..+.-.|+++.|..++......+ +-|..+-..+..+....|+++.|..+...-.
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99999999999999999998875 5588889999999999999999998876443
No 83
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.14 E-value=1.3e-08 Score=64.96 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 027412 98 VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGY 177 (223)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (223)
.....+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++...+.++ .+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 334444455555555555555555554443 33445555555555555555555555555544432 2444445555555
Q ss_pred HhcCCcchHHHHHHHHHH
Q 027412 178 CKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 178 ~~~g~~~~a~~~~~~~~~ 195 (223)
...|++++|...+++..+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555554
No 84
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.6e-08 Score=75.95 Aligned_cols=212 Identities=16% Similarity=0.106 Sum_probs=143.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
..+++.+..++++.+.+.. ++....+..-|.++...|+..+-.-+-.++.+.-+ ..+.+|-++.--|.-.|+..+|.+
T Consensus 256 ~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHH
Confidence 4567778888888777664 44555666666677777777777777777765542 256677777777777777888888
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHH----------------------------------hhCChhHHHHHHHHHHHCCCC
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYF----------------------------------KSQNMKSAFDVYEEMCENNIS 129 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------------------------~~~~~~~a~~~~~~~~~~~~~ 129 (223)
.|.+....++. -...|-.+..+|+ +.++.+.|.++|.++.... |
T Consensus 334 y~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P 411 (611)
T KOG1173|consen 334 YFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-P 411 (611)
T ss_pred HHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-C
Confidence 87776655443 2334444444444 4555555555555555543 5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 130 PNIVSYSILIDGLCKRGLMEEALYAFHCALDN----HLL--PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
.|+..++-+.-.....+.+.+|..+|+..+.. +.. .-..+++.+..+|.+.+.+++|+..+++.+.. .+-+..
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~ 490 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDAS 490 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchh
Confidence 67777788877778888999999999887721 110 12346899999999999999999999999884 234455
Q ss_pred hHHHHhhhHhhcCCCcc
Q 027412 204 LLSTLADYNLQSSGSQE 220 (223)
Q Consensus 204 ~~~~l~~~~~~~~~~~~ 220 (223)
++.++--.+...|+.+.
T Consensus 491 ~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDK 507 (611)
T ss_pred HHHHHHHHHHHhcChHH
Confidence 66666556666665543
No 85
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=3.3e-09 Score=81.66 Aligned_cols=196 Identities=15% Similarity=0.171 Sum_probs=143.6
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH---------
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC--------- 73 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 73 (223)
...|-...|+.+|+++. .|...+.+|...|+..+|..+..+..+. +|++..|..+++...
T Consensus 409 ~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 409 LSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHH
Confidence 34566667777776543 4566677777777777777777766653 556666655555432
Q ss_pred -------------------hcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhH
Q 027412 74 -------------------KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVS 134 (223)
Q Consensus 74 -------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 134 (223)
+.++++++.+.|+.-.+.++- ...+|..+.-++.+.++++.+.+.|....... |.+...
T Consensus 478 Elsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~ea 555 (777)
T KOG1128|consen 478 ELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEA 555 (777)
T ss_pred HHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhh
Confidence 245666666666666665443 66788888889999999999999999888764 556789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC-CCchhhHHHHhhhH
Q 027412 135 YSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGI-MPDGLLLSTLADYN 212 (223)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~ 212 (223)
||++-.+|.+.++..+|...+.+..+.+ ..+...|.+.+......|.+++|++.+.++.+... .-|......++...
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 9999999999999999999999999887 45777888888888999999999999998876521 22444444444433
No 86
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.11 E-value=1e-07 Score=73.18 Aligned_cols=208 Identities=14% Similarity=0.092 Sum_probs=147.8
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
+.+.++++|..+|.+.... .|+..+|.--+..-.-.++.++|.+++++..+.- +.-...|-.+.+.+-+.++.+.|.
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHH
Confidence 3566788888888877664 5677777777777777788888888888777552 223456777777777778888887
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
..|..-.+.-|. .+..|..|...=-+.|+.-.|..+++.....+ |-+...|...|+.-.+.|..+.|..++.+.++.-
T Consensus 706 ~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 706 EAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777766555433 56677777777777777888888888777665 6677777778888888888887777776665421
Q ss_pred C-----------------------------CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc-hhhHHHHhhhH
Q 027412 163 L-----------------------------LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYN 212 (223)
Q Consensus 163 ~-----------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 212 (223)
+ ..|+.....+...+....++++|.+.|.+.++. .|| ..+|.-+...+
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFE 861 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHH
Confidence 1 125566677777778888888888888888874 555 45666666666
Q ss_pred hhcCC
Q 027412 213 LQSSG 217 (223)
Q Consensus 213 ~~~~~ 217 (223)
.+.|.
T Consensus 862 l~hG~ 866 (913)
T KOG0495|consen 862 LRHGT 866 (913)
T ss_pred HHhCC
Confidence 66663
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=8e-08 Score=71.56 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=112.2
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
...|++++|.+.+++..+.. +.+...+.. ...+.. .+..+.+.+.+.... ...+........+...+...|++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCH
Confidence 45789999999999988764 334444442 222222 345555555555421 11222344555677788999999
Q ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC-CCCh--hHHHHHHHHHHhcCCHHHHHHHH
Q 027412 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNI--VSYSILIDGLCKRGLMEEALYAF 155 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~ 155 (223)
++|...+++..+..+. +...+..+..++...|++++|..++++...... .++. ..+..+...+...|++++|..++
T Consensus 131 ~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 131 DRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998766 678888899999999999999999999887531 1222 34557888999999999999999
Q ss_pred HHHHhC
Q 027412 156 HCALDN 161 (223)
Q Consensus 156 ~~~~~~ 161 (223)
++....
T Consensus 210 ~~~~~~ 215 (355)
T cd05804 210 DTHIAP 215 (355)
T ss_pred HHHhcc
Confidence 998644
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=1e-07 Score=73.28 Aligned_cols=181 Identities=16% Similarity=0.125 Sum_probs=136.1
Q ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC----C----------CCCcH--HHHHHHHHHHHh
Q 027412 11 ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----Q----------LKPNS--ITFTILIDAFCK 74 (223)
Q Consensus 11 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~ 74 (223)
+...+..+..+|+| .+|+.+-..|....+.+-...++...... + -+|+. .++..+...|..
T Consensus 130 ~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 44555666777765 36777777777666666666666665432 1 12333 355777888889
Q ss_pred cCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 027412 75 EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYA 154 (223)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 154 (223)
.|++++|++++++.+...|. .+..|..-.+.+-+.|++++|...++.+...+ .-|...-+-.+..+.+.|+.++|.++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999998765 58889999999999999999999999999876 56777777788889999999999999
Q ss_pred HHHHHhCCCCCCH--------HHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 155 FHCALDNHLLPDV--------VTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 155 ~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
+....+.+..|.. .-......+|.+.|++..|++-|....+.
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9888766543322 12245677799999999988877666543
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=3.7e-09 Score=75.68 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=120.9
Q ss_pred CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHH
Q 027412 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102 (223)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (223)
.|.......+...+...++-+.++.-+++....... .+..........+...|++++|++++... .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 445445544544444334444555544444333322 23333334445566778999998887642 25677777
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK----RGLMEEALYAFHCALDNHLLPDVVTYAILIRGYC 178 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
.+.++.+.++++.|.+.++.|.+.+ +..+...++.++.. .+.+.+|..+|+++.+. ..+++.+.+.++.+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 8899999999999999999998753 33455556555543 34699999999998765 4578899999999999
Q ss_pred hcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCC
Q 027412 179 KAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 218 (223)
Q Consensus 179 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 218 (223)
..|++++|.+++.+..+.. .-++.+...++-+....|+.
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-T
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999987643 23455666666666666655
No 90
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=3.9e-07 Score=66.28 Aligned_cols=180 Identities=12% Similarity=0.030 Sum_probs=137.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG-RMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (223)
++..+-.++...+..++|+.++.++++.++. +..+|+.-..++...| ++++++..++++.+.+++ +..+|+....++
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 4445555666678899999999999987533 5567777777777777 689999999999998887 777888777777
Q ss_pred HhhCCh--hHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 027412 108 FKSQNM--KSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA---GR 182 (223)
Q Consensus 108 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 182 (223)
.+.|+. +++..+++++.+.+ +-+..+|+....++...|+++++++.++++++.++ .|...|+....++.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 777763 67899999999876 77889999999999999999999999999999887 4777887777666554 33
Q ss_pred c----chHHHHHHHHHHCCCCCch-hhHHHHhhhHhh
Q 027412 183 P----TEAMQLYDSMLRNGIMPDG-LLLSTLADYNLQ 214 (223)
Q Consensus 183 ~----~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 214 (223)
. ++...+..+++.. .|+. ..|+.+...+..
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhc
Confidence 3 3567777677763 5554 455555554443
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=1.3e-08 Score=78.46 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=124.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHH
Q 027412 22 GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101 (223)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (223)
+.+|--..-..+...+.+.|-...|..+++++. .|...+.+|...|+..+|..+..+..++ +|++..|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 445555556678888999999999999999874 4667888999999999999998888773 34666666
Q ss_pred HHHHHHHh----------------------------hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 027412 102 CLIDGYFK----------------------------SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALY 153 (223)
Q Consensus 102 ~l~~~~~~----------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 153 (223)
.++..... .++++++.+.|+.-.+.+ +....+|..+..+..+.++++.|.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 55554433 345555666665555443 4556678888888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 027412 154 AFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 197 (223)
.|.......+ -+...||++..+|.+.++-.+|...+.+..+.+
T Consensus 541 aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 541 AFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9988887665 467889999999999999999999999988775
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4e-07 Score=66.41 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=23.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHH
Q 027412 71 AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 120 (223)
.+...|++++|.-.|+......|. +...|.-|+.+|...|.+.+|.-.-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHH
Confidence 344444555555555544443332 4455555555555555555544333
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.99 E-value=1e-09 Score=51.59 Aligned_cols=32 Identities=41% Similarity=0.784 Sum_probs=16.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 127 NISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 127 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
|++||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555544
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.9e-06 Score=58.99 Aligned_cols=187 Identities=14% Similarity=0.126 Sum_probs=141.3
Q ss_pred cCHHHHHHHHHHHhhC---C-CCcCHH-HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 6 CHLDAALKLFGQLTDR---G-LEPDII-TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
.+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++...- +-+..+-..-...+--.|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4677788888877542 3 344433 35566667777899999999999987553 3344443333344556799999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
|+++++.+.+.+|. |..++---+.+.-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999998876 7778877777777888888888888888776 578999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC---cchHHHHHHHHHHC
Q 027412 161 NHLLPDVVTYAILIRGYCKAGR---PTEAMQLYDSMLRN 196 (223)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~ 196 (223)
..| .++..+..+...+.-.|. .+.+.++|.+.++.
T Consensus 183 ~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 765 466667777777655554 56788888888874
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=2.7e-07 Score=68.46 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=60.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH
Q 027412 70 DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLME 149 (223)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 149 (223)
..+...|++++|+..++.++...|. |+..+......+...++.++|.+.++++.... |........+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 3334455556666666555555443 55555555555556666666666666555542 222444455555555666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 027412 150 EALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEA 186 (223)
Q Consensus 150 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 186 (223)
+|...++......+ -|+..|..|.++|...|+..++
T Consensus 392 eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 392 EAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHH
Confidence 66655555554443 3555555555555554444333
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.97 E-value=1.3e-09 Score=51.23 Aligned_cols=32 Identities=41% Similarity=0.889 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 027412 57 QLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88 (223)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (223)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555555444
No 97
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.97 E-value=9e-08 Score=71.03 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (223)
.....|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..+..+. +...+......+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344566677777889999999999998763 44 3445788888888888999999998887665 777777788888
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 108 FKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
.+.++++.|..+.+++.+.. |.+..+|..|+.+|...|+++.|+..+..+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999998864 5556699999999999999999998887665
No 98
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.5e-07 Score=65.36 Aligned_cols=193 Identities=15% Similarity=0.076 Sum_probs=146.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
...++..|+.+-++.++... .+...+..-...+...+++++|.-.|.......+ -+...|..|+.+|...|.+.+|.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHH
Confidence 45678888888888877642 3566676667888899999999999998876642 377899999999999999999988
Q ss_pred HHHHHHhcCCCccHHHHHHHH-HHHH-hhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 84 MFSKMLEKGPKANVVTYSCLI-DGYF-KSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
+-++..+.-+ .+..+...+. ..+. ...--++|..++++..+.. |.-....+.+...+...|..+.++.++++.+..
T Consensus 390 ~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 390 LANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 7776655423 2556665542 2232 2233478899998888753 344567788888899999999999999988764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhh
Q 027412 162 HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLL 204 (223)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 204 (223)
. ||....+.+.+.+...+.+++|...|...++ +.|+..-
T Consensus 468 ~--~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~ 506 (564)
T KOG1174|consen 468 F--PDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKR 506 (564)
T ss_pred c--cccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchH
Confidence 3 7888889999999999999999999988887 4666543
No 99
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.95 E-value=2.3e-07 Score=68.86 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
....|+..+...++++.|..+|+++.+..+ + ....+++.+...++..+|.+++.+..... +.+...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~p--e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDP--E--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCC--c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 445667777778999999999999998763 3 44558888888899999999999999764 667788888888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 144 KRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
+.++++.|+++.+++.+..+ -+..+|..|+.+|...|+++.|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999998765 467799999999999999999999888765
No 100
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=5.6e-07 Score=61.88 Aligned_cols=152 Identities=22% Similarity=0.192 Sum_probs=86.4
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh---
Q 027412 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK--- 109 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 109 (223)
-...|...+++++|++...... +......=...+.+..+.+.|.+.+++|.+.+ +..+.+-|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 3445666667777766665521 22222222334445556677777777776532 34455544444432
Q ss_pred -hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch-HH
Q 027412 110 -SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE-AM 187 (223)
Q Consensus 110 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~ 187 (223)
.+.+..|.-+|++|.++ .+|++.+.+..+.++...|++++|..+++..+.... .++.+...++.+-...|...+ ..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHH
Confidence 34566677777777654 366777777777777777777777777777766554 355555555555555555433 33
Q ss_pred HHHHHHHH
Q 027412 188 QLYDSMLR 195 (223)
Q Consensus 188 ~~~~~~~~ 195 (223)
+.+.++..
T Consensus 263 r~l~QLk~ 270 (299)
T KOG3081|consen 263 RNLSQLKL 270 (299)
T ss_pred HHHHHHHh
Confidence 44444444
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=2.5e-06 Score=63.54 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=118.8
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCCh
Q 027412 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (223)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (223)
.-.+...|+.+.|+..+..+.... +-|+..+......+.+.++.++|.+.++++....|. .....-.+..++.+.|++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCCh
Confidence 344566789999999999988664 337777788889999999999999999999998766 467777899999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 114 KSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
++|..+++...... +.|+..|..|.++|...|+..++.... ...+...|++++|...+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHH
Confidence 99999999988775 889999999999999999988776544 34556778899999888888
Q ss_pred HHC
Q 027412 194 LRN 196 (223)
Q Consensus 194 ~~~ 196 (223)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 776
No 102
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.90 E-value=4.3e-07 Score=58.61 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=51.4
Q ss_pred cCchhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccH--HHHHHHHHHHHhhCChhH
Q 027412 40 LNRLDEAVQLFEKLTCVQLKP--NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV--VTYSCLIDGYFKSQNMKS 115 (223)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 115 (223)
.++...+...++.+....... .....-.+...+...|++++|...|+......+.|.. .....+..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555555554432111 0112222334445555555555555555554332221 122334445555555555
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 027412 116 AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHC 157 (223)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (223)
|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555442221 22333444455555555555555555543
No 103
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.90 E-value=4.1e-07 Score=58.72 Aligned_cols=128 Identities=17% Similarity=0.182 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC--hhHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--IVSYSIL 138 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 138 (223)
..|..++..+ ..++...+...++.+....+... ....-.+...+...|++++|...|+.+......++ ......+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 47899999999999998766521 33444567888999999999999999998752222 2345567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 139 IDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
...+...|++++|+..++...... .....+.....++...|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888999999999999997754333 35567788899999999999999999864
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.8e-07 Score=65.53 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=136.5
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHhcCChhHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI-LIDAFCKEGRMDDA 81 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a 81 (223)
++..++..|++++..-.++. +.+....+.|..+|....++..|-..++++... .|...-|.. -...+.+.+.+.+|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHH
Confidence 56678888888888777764 237778899999999999999999999999765 444444432 34566678899999
Q ss_pred HHHHHHHHhcCCCccHH--HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 82 TMMFSKMLEKGPKANVV--TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+++...|... ++.. ....-.....+.+++..+..++++.-..| +..+.+.......+.|+++.|.+-|+...
T Consensus 98 LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 98 LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHH
Confidence 9999887543 2222 22222233456788888888888775433 55666777777789999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 027412 160 DNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIM 199 (223)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 199 (223)
+-+--.....|+..+ +..+.|+++.|+++..+++++|++
T Consensus 172 qvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred hhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 764434456676555 445669999999999999988765
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=2.1e-07 Score=70.20 Aligned_cols=163 Identities=19% Similarity=0.186 Sum_probs=133.5
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChh
Q 027412 35 CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (223)
.-+.+.|++.+|.-.|+..+..++. +...|..|.......++-..|+..+++-.+.++. |..+.-.|...|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 3466789999999999999887644 7889999999999999999999999999998887 7888888888888777666
Q ss_pred HHHHHHHHHHHC------------------------------------------CCCCChhHHHHHHHHHHhcCCHHHHH
Q 027412 115 SAFDVYEEMCEN------------------------------------------NISPNIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 115 ~a~~~~~~~~~~------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
.|...++.-+.. +..+|+.+...|.-.|.-.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 666666554322 21256667778888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCch
Q 027412 153 YAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
..|+.++...+ -|..+||-|...+....+.++|+..|.++++ +.|.-
T Consensus 451 Dcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~y 497 (579)
T KOG1125|consen 451 DCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGY 497 (579)
T ss_pred HHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCe
Confidence 99999988766 4788999999999999999999999999998 56764
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.6e-06 Score=65.16 Aligned_cols=204 Identities=17% Similarity=0.167 Sum_probs=155.6
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHH-------HHHHHHhcC
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI-------LIDAFCKEG 76 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~ 76 (223)
+..+++.|++-+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+. +..+|.+.+
T Consensus 236 kkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHH
Confidence 4567888888888888764 36666788888999999999888888887776633 2333333 344566678
Q ss_pred ChhHHHHHHHHHHhcCCCccHHH-------------------------HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC
Q 027412 77 RMDDATMMFSKMLEKGPKANVVT-------------------------YSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 131 (223)
+++.++..|.+.......|+... ...-...+.+.|++..|+..|.+++..+ |.|
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~D 391 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PED 391 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cch
Confidence 88889888888766544443221 1223556778999999999999999887 888
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhh
Q 027412 132 IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 211 (223)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 211 (223)
...|.....+|.+.|.+..|++-.+...+.++ +....|.--..++....+|++|.+.|.+.++. .|+..-+..-+.-
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRR 468 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 99999999999999999999999988888765 45666777777888889999999999999984 6777766666665
Q ss_pred Hhh
Q 027412 212 NLQ 214 (223)
Q Consensus 212 ~~~ 214 (223)
|..
T Consensus 469 c~~ 471 (539)
T KOG0548|consen 469 CVE 471 (539)
T ss_pred HHH
Confidence 555
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=3.8e-06 Score=57.52 Aligned_cols=156 Identities=18% Similarity=0.117 Sum_probs=120.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
..|+.+.|..+++.+.++- +.+..+-..-...+-..|++++|+++++.+.+.+ +.|..++.-=+-..-..|+.-+|++
T Consensus 64 d~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 4678899999999988774 3344443333444666899999999999999886 3366666655555566788788998
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG---LMEEALYAFHCALD 160 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 160 (223)
-+....+.-+. |...|.-+...|...|++++|.-+++++.-.. |.++..+..+...+.-.| +.+.+.+.|.+.++
T Consensus 142 ~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888877454 99999999999999999999999999999864 666667777777766554 56678899999888
Q ss_pred CCC
Q 027412 161 NHL 163 (223)
Q Consensus 161 ~~~ 163 (223)
..+
T Consensus 220 l~~ 222 (289)
T KOG3060|consen 220 LNP 222 (289)
T ss_pred hCh
Confidence 654
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=4.4e-06 Score=57.65 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK 144 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (223)
...-...|+..+++++|++...... +......=..++.+..+.+-|.+.+++|.+.+ +..+.+.|..++.+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~ 181 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVK 181 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHH
Confidence 3344556788899999999887621 34444444566778888999999999998753 66788878777765
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCC
Q 027412 145 ----RGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 218 (223)
Q Consensus 145 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 218 (223)
.+.+.+|.-+|+++-+. ..|++.+.+..+.++...|++++|..++++.+... .-++.+...++-+....|..
T Consensus 182 la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 46789999999999764 34899999999999999999999999999999862 34456666666666665554
No 109
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.7e-06 Score=61.36 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=112.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.|++..|.++|++-.+- .|+...|++.+..=.+.+.++.|..+|++..-. .|++..|--....-.+.|+...+..+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 35666666666665544 566666666666666666666666666666533 45666666666666666666666666
Q ss_pred HHHHHhc-CC-CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHH------
Q 027412 85 FSKMLEK-GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--IVSYSILIDGLCKRGLMEEALYA------ 154 (223)
Q Consensus 85 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~------ 154 (223)
|+..... |- ..+...+.++...-.+.+.++.|.-+|+-++.. +|.+ ...|..+...--+-|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 6655443 10 112234444444444556666666666666654 2333 33444444433344544333322
Q ss_pred --HHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC
Q 027412 155 --FHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMP 200 (223)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 200 (223)
++...+.++ -|..+|--.+..-...|+.+...++|++.+.. ++|
T Consensus 309 ~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 309 FQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred hHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 233334443 47788888888888889999999999998875 455
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=2.3e-06 Score=69.57 Aligned_cols=130 Identities=11% Similarity=0.083 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
++..++.+|-+.|+.+++...++++++.++. |+.+.|.+...|... +.++|.+++.++... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 4444555555556666666666666655544 555555555555555 555555555554432 11
Q ss_pred hcCCHHHHHHHHHHHHhCC-------------------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc-hh
Q 027412 144 KRGLMEEALYAFHCALDNH-------------------LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD-GL 203 (223)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~ 203 (223)
..+++..+.++|.++.... ...-..++..+...|...++|+++..+++.+++. .|+ ..
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~ 258 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNK 258 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchh
Confidence 1122222222222222211 1112234444556666777777888888777774 333 23
Q ss_pred hHHHHhhhH
Q 027412 204 LLSTLADYN 212 (223)
Q Consensus 204 ~~~~l~~~~ 212 (223)
...-++.+|
T Consensus 259 a~~~l~~~y 267 (906)
T PRK14720 259 AREELIRFY 267 (906)
T ss_pred hHHHHHHHH
Confidence 344444444
No 111
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.81 E-value=3.3e-07 Score=54.10 Aligned_cols=88 Identities=32% Similarity=0.385 Sum_probs=34.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLM 148 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 148 (223)
...+...|++++|...+++..+..+. +...+..+..++...+++++|...++...... +.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 33333344444444444444333222 22333334444444444444444444443332 22223333444444444444
Q ss_pred HHHHHHHHHH
Q 027412 149 EEALYAFHCA 158 (223)
Q Consensus 149 ~~a~~~~~~~ 158 (223)
+.|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=2.1e-06 Score=69.74 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=114.6
Q ss_pred CCCc-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------
Q 027412 22 GLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK------ 94 (223)
Q Consensus 22 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 94 (223)
++.| +...+..|+..+...+++++|.++.+...+..+. ....|..++..+.+.++..++.-+ .+...-..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 3444 4678999999999999999999999987766422 344454455566666666655544 22222111
Q ss_pred ------------ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 95 ------------ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 95 ------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
-+..++..++.+|-+.|+.+++..+++++.+.+ +-|..+.|.+...|... ++++|.+++.+....
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 123567778999999999999999999999987 78899999999999999 999999999887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 163 LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
+...+++..+..+|.++...
T Consensus 179 --------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 --------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred --------------HHhhhcchHHHHHHHHHHhc
Confidence 44555666777777777663
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.78 E-value=8.9e-07 Score=56.61 Aligned_cols=97 Identities=8% Similarity=-0.066 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
.....+...+...|++++|.++|+.+...++. +...|-.|..++-..|++++|+..|......+ +.|+..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34445666667788888888888888887776 67777778888888888888888888888776 56778888888888
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 027412 143 CKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~ 161 (223)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888876653
No 114
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.78 E-value=9.8e-08 Score=75.46 Aligned_cols=163 Identities=19% Similarity=0.203 Sum_probs=108.0
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------------------------CCccHHHHHHH
Q 027412 48 QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG------------------------PKANVVTYSCL 103 (223)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~~~l 103 (223)
.++-.+...|+.|+..||..++.-|+..|+.+.|- +|.-|..+. -.|...+|..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 35566778899999999999999999999999887 776664321 13567899999
Q ss_pred HHHHHhhCChhH---HHHHHHHHH----HCCCCCChhHH--------------HHHHHHHHhcCCHHHHHHHH-------
Q 027412 104 IDGYFKSQNMKS---AFDVYEEMC----ENNISPNIVSY--------------SILIDGLCKRGLMEEALYAF------- 155 (223)
Q Consensus 104 ~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~------- 155 (223)
..+|...||... +.+.++.+. ..|+.....-+ ...+......|.++.+++++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999999765 333222222 22221100000 11112222223333333332
Q ss_pred -----------------------HHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhh
Q 027412 156 -----------------------HCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 211 (223)
Q Consensus 156 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 211 (223)
.......-.|++.+|..++.+-...|+.+.|..++.+|.+.|+..+..-|..|+-+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 11111111378999999999999999999999999999999999988877766544
No 115
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=1e-06 Score=63.28 Aligned_cols=195 Identities=13% Similarity=0.093 Sum_probs=115.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCc-------hhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-------LDEAVQLFEKLTCVQLKPN-SITFTILIDAFC 73 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 73 (223)
|.+.+++++|..+.+.+. +.++.-|..-.-.++..|+ ..-|...|+-.-+.+..-| +.--.++..++.
T Consensus 295 yL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred ecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 457788888888877655 2234444333333444443 3345555554433332222 222344555555
Q ss_pred hcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALY 153 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 153 (223)
-..++++++.++..+..--...|...+| +..+++..|++.+|.++|-.+....++.+..-...+.++|.+.+.++.|+.
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 5667788887777776654443444444 788888888888888888776654444444444566778888888888887
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhH
Q 027412 154 AFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLL 205 (223)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 205 (223)
++-++...+ ........+..-|.+.+.+--|.+.|+.+.. ..|++.-|
T Consensus 450 ~~lk~~t~~--e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 450 MMLKTNTPS--ERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 775543211 1122334455667777877777777777766 45665544
No 116
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=1e-05 Score=60.39 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=148.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.+++..|.++|++.+.-.. .+...|...+.+=.+.+.+..|..++++....-+..| ..|...+.+--..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 4678899999999987653 3677888888888899999999999999886543333 3344455555567999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL- 163 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 163 (223)
|++-.. ..|+...|.+.+..-.+.+.++.|..+++...- +.|++.+|.-.+..-.+.|....+..+|+.+.+.--
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 998876 578999999999999999999999999999887 469999999999999999999999999998876411
Q ss_pred -CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 164 -LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 164 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
..+...+.+.+.-=.++..++.|..+|+-.++.
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123344555555556778889999999888875
No 117
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.76 E-value=1.3e-06 Score=54.19 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=41.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC--CCChhHHHHHHHHH
Q 027412 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI--SPNIVSYSILIDGL 142 (223)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 142 (223)
.++..+.+.|++++|...|..+....+.. ....+..+..++.+.|+++.|...++.+....- +....++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 34444444455555555554444433210 122333344445555555555555554443210 01123344444444
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 027412 143 CKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~ 161 (223)
.+.|++++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555554444
No 118
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.76 E-value=4.8e-08 Score=56.77 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 027412 76 GRMDDATMMFSKMLEKGPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYA 154 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 154 (223)
|+++.|+.+++++.+..+. ++...+..+..++.+.|++++|..++++ .+.+ +.+......+..++.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455555555555554432 1233333345555555555555555544 2111 11223333334555555555555555
Q ss_pred HH
Q 027412 155 FH 156 (223)
Q Consensus 155 ~~ 156 (223)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=7.8e-06 Score=68.12 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=154.4
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC-CCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 027412 13 KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP---NSITFTILIDAFCKEGRMDDATMMFSKM 88 (223)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (223)
+=|+++.... +.+...|...|......++.++|.++.+++... ++.- -...|.++++.-..-|.-+...++|++.
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3355555443 335667999999999999999999999998643 2211 1246777777776778888899999999
Q ss_pred HhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH
Q 027412 89 LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL-PDV 167 (223)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 167 (223)
.+.. . ....|..|...|.+.+.+++|.++++.|.+. +......|...+..+.++++-+.|..++.++++.-++ -..
T Consensus 1524 cqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 8752 2 3567888999999999999999999999976 3467889999999999999999999999998875332 234
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc-hhhHHHHhhhHhhcCCC
Q 027412 168 VTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGS 218 (223)
Q Consensus 168 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~ 218 (223)
....-.+..-.+.|+.+.+..+|+..+.. .|. ...|+..++.=.+.++.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCH
Confidence 55666677778999999999999999875 343 45677777777766654
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.75 E-value=6.8e-07 Score=66.34 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=81.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL 147 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 147 (223)
....+...|++++|+..|++.++.++. +...|..+..++...|++++|+..++++.... +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 455667789999999999999998776 78888889999999999999999999998875 5677888899999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 027412 148 MEEALYAFHCALDNHL 163 (223)
Q Consensus 148 ~~~a~~~~~~~~~~~~ 163 (223)
+++|...|++.++.++
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999988764
No 121
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.75 E-value=9.7e-06 Score=62.47 Aligned_cols=203 Identities=15% Similarity=0.113 Sum_probs=139.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
.-|+-++|.+....-.+.++. +.+.|..+.-.+...+++++|++.|..+...+. .|...+.-+...-.+.++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHH
Confidence 446677777777666665433 566777777777777778888888877776653 366667666666667777777777
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC-CCCChhHHHHHH------HHHHhcCCHHHHHHHHH
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPNIVSYSILI------DGLCKRGLMEEALYAFH 156 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~ 156 (223)
...+..+..+. ....|..++.++.-.|++..|..+++...+.. -.|+...+.... ....+.|..+.|.+.+.
T Consensus 131 tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 77777666444 56778888888899999999999999888653 246655554332 33456777888877775
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhH
Q 027412 157 CALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 212 (223)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 212 (223)
.-.. .+.-....-..-...+.+.+++++|..++..++.. .||...|...+..+
T Consensus 210 ~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 210 DNEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred hhhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 4432 22112223345566788999999999999999985 78877776555443
No 122
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=1.3e-05 Score=57.55 Aligned_cols=195 Identities=13% Similarity=0.128 Sum_probs=147.2
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHH-HHHHHHHHHhcCChhH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT-FTILIDAFCKEGRMDD 80 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 80 (223)
+..+|++..|+.-|...++-++. +-.++..-...|...|+...|+.=+.+..+. +||-.. -..-...+.+.|.+++
T Consensus 48 lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHH
Confidence 34578899999999888865211 2223334456788889999998888888876 566432 2233456778999999
Q ss_pred HHHHHHHHHhcCCCccH--------------HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 81 ATMMFSKMLEKGPKANV--------------VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
|..=|+..++..+..+. ......+..+.-.|+...|+.....+++.. +.|...+..-..+|...|
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcC
Confidence 99999999886553111 123334566777899999999999999875 788899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 147 LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
++..|+.-++...+..- .++.++.-+...+...|+.+.++...++.++ +.||-.
T Consensus 204 e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred cHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 99999988887766544 4777777888889999999999999999887 567643
No 123
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.74 E-value=5.4e-07 Score=53.15 Aligned_cols=96 Identities=28% Similarity=0.334 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYC 178 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...+..+ .+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence 35667888889999999999999998764 55567888899999999999999999999887665 35578888999999
Q ss_pred hcCCcchHHHHHHHHHHC
Q 027412 179 KAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 179 ~~g~~~~a~~~~~~~~~~ 196 (223)
..|++++|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999988763
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.71 E-value=2.3e-06 Score=53.06 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--cHHHHHHHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLI 104 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 104 (223)
++..++..+.+.|++++|...++.+.+.... .....+..+..++.+.|+++.|...++.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444445555555555555555555443211 012334445555555555555555555555443321 123444455
Q ss_pred HHHHhhCChhHHHHHHHHHHHC
Q 027412 105 DGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
.++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.71 E-value=1.2e-06 Score=58.06 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP--NSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 91 (223)
.+..+...+...|++++|...|++.......+ ...++..+..++...|++++|...+++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444444444455555555554444332111 1223444444444444555554444444443
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.71 E-value=1.6e-06 Score=55.53 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
......+...+...|++++|..+|+.+....+. +..-|..|..++...|++++|+..|......++. ++..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 445566777788899999999999999877644 6777888999999999999999999999999886 89999999999
Q ss_pred HHhhCChhHHHHHHHHHHHC
Q 027412 107 YFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~ 126 (223)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988864
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.70 E-value=2.2e-06 Score=63.69 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=83.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (223)
.-...+...|++++|++.|.++.+.... +...|..+..+|...|++++|+..+++.+..++. +...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 3456677889999999999999987644 7788889999999999999999999999998776 7788999999999999
Q ss_pred ChhHHHHHHHHHHHCC
Q 027412 112 NMKSAFDVYEEMCENN 127 (223)
Q Consensus 112 ~~~~a~~~~~~~~~~~ 127 (223)
++++|...|+++.+.+
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999864
No 128
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.70 E-value=6.9e-06 Score=63.79 Aligned_cols=145 Identities=16% Similarity=0.164 Sum_probs=95.5
Q ss_pred CCCcHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC--------ChhHHHHHHHHHH
Q 027412 58 LKPNSITFTILIDAFCKE-----GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ--------NMKSAFDVYEEMC 124 (223)
Q Consensus 58 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 124 (223)
.+.+...|...+++.... ++...|..+|++..+.+|. +...|..+..++.... +...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 355667777777765432 2366788888888887665 5556665544443321 1223334444333
Q ss_pred HC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 125 EN-NISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 125 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
.. ..+.+...+..+.......|++++|...++++.+.+ |+...|..+...+...|++++|...+++... +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 32 124455677777777777888888888888888776 4677888888888888888888888888877 466665
Q ss_pred hHHH
Q 027412 204 LLST 207 (223)
Q Consensus 204 ~~~~ 207 (223)
||..
T Consensus 488 t~~~ 491 (517)
T PRK10153 488 TLYW 491 (517)
T ss_pred hHHH
Confidence 5543
No 129
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.70 E-value=1.5e-06 Score=57.56 Aligned_cols=94 Identities=13% Similarity=-0.047 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 027412 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILI 139 (223)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 139 (223)
...+..++..+...|++++|+..|++.....+.+ ...++..+..++...|++++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556667777777788888888888877654332 23467777788888888888888888877653 44455566666
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 027412 140 DGLC-------KRGLMEEALYAFH 156 (223)
Q Consensus 140 ~~~~-------~~~~~~~a~~~~~ 156 (223)
..+. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 6665 5555554444433
No 130
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=1.7e-05 Score=62.25 Aligned_cols=116 Identities=22% Similarity=0.112 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 027412 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCK 179 (223)
Q Consensus 100 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
|......+.+.++.++|...+.++.... +.....|......+...|.+++|.+.|......++ -++.....+..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 4455666677777777777777776653 55566666666777777777777777777666554 255566677777777
Q ss_pred cCCcchHHH--HHHHHHHCCCCCc-hhhHHHHhhhHhhcCCCc
Q 027412 180 AGRPTEAMQ--LYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 180 ~g~~~~a~~--~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 219 (223)
.|+..-|.. ++.++.+. .|+ ...|..+-..+-+.|+.+
T Consensus 731 ~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred hCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchH
Confidence 777666666 66776663 444 334444444444444444
No 131
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=6.3e-07 Score=62.67 Aligned_cols=86 Identities=23% Similarity=0.238 Sum_probs=43.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 027412 73 CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
.+.+++++|+..|.+.+...|. |.+.|..-..+|.+.|+++.|++-.+..+..+ +....+|..|..+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555555554444 45555555555555555555555555554433 333445555555555555555555
Q ss_pred HHHHHHHh
Q 027412 153 YAFHCALD 160 (223)
Q Consensus 153 ~~~~~~~~ 160 (223)
+.|++.++
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55555444
No 132
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.68 E-value=9.4e-08 Score=55.52 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=37.4
Q ss_pred ccCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
.|+++.|+.+|+++.+.... ++...+..+..++.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555555555555554221 1233334455555555555555555555 21211 122333344555555555555555
Q ss_pred HHHH
Q 027412 84 MFSK 87 (223)
Q Consensus 84 ~~~~ 87 (223)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 133
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.66 E-value=7.2e-06 Score=54.57 Aligned_cols=84 Identities=14% Similarity=0.056 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDG 141 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (223)
.+..+...+...|++++|...|++..+..+.+. ...+..+..++.+.|++++|...+++..... +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555556666666666666554433221 2455555666666666666666666665542 3344455555555
Q ss_pred HHhcCCH
Q 027412 142 LCKRGLM 148 (223)
Q Consensus 142 ~~~~~~~ 148 (223)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5555553
No 134
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.66 E-value=6.9e-06 Score=54.66 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+..+. +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 45678888889999999999999999987643332 467888999999999999999999999987665 677778888
Q ss_pred HHHHhhCChhHHHHHHH
Q 027412 105 DGYFKSQNMKSAFDVYE 121 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~ 121 (223)
.++...|+...+..-++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 88888887655444333
No 135
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.66 E-value=1.3e-06 Score=65.41 Aligned_cols=119 Identities=14% Similarity=0.190 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSIL 138 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 138 (223)
+......+++.+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.++.+++.=...|+.||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444455554445555555555555443 11111233345555555555555555555555555555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 027412 139 IDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCK 179 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
+..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555544433444444444444333
No 136
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.66 E-value=2e-06 Score=61.77 Aligned_cols=131 Identities=12% Similarity=0.082 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK-EGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+.-+. +...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 357777777777777888888888877443 2234444444444223 45666688888877776443 67777777777
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 107 YFKSQNMKSAFDVYEEMCENNISPNI---VSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
+...++.+.|..+|+..... ++++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77788888888888877754 33322 47777777777777877777777777664
No 137
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.9e-05 Score=59.37 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=127.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|.+...++...+ +.+...+..-+-+..+.+++++|+.+.+.-... ..+...+-.=.-+..+.+..++|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHH
Confidence 456789999999999999876 446677777777889999999999666554321 11111111223344578999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCC----------------------------C--C
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS----------------------------P--N 131 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------------------~--~ 131 (223)
+..++-.. . .+..+...-...+.+.+++++|..+|+.+.+++.+ | +
T Consensus 99 lk~~~~~~---~-~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 99 LKTLKGLD---R-LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHhccc---c-cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 99888321 1 13446666788899999999999999998665422 1 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCC-----CCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 027412 132 IVSYSILIDGLCKRGLMEEALYAFHCALDN--------HLL-----PDVV-TYAILIRGYCKAGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 197 (223)
...+......+...|++.+|+++++...+. ... -... .-..+.-++...|+-++|..++...++..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 112233445566789999999999988321 110 0111 12335556778899999999999998874
No 138
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.64 E-value=1.7e-06 Score=64.73 Aligned_cols=120 Identities=12% Similarity=0.119 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--NISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAIL 173 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 173 (223)
+......++..+....+.+.+..++-+.+.. ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555555666666666666666666666543 11122334456677777777777777777666666766777777777
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhc
Q 027412 174 IRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 174 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 215 (223)
+..+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777776666665555556666555555544
No 139
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.6e-06 Score=57.61 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=99.7
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR---GLMEEALYAFHCALDN 161 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 161 (223)
++.-...+|. |...|-.|..+|...|+++.|...|.+..+.. +++...+..+..++... ....++..+|++++..
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3444455676 89999999999999999999999999999875 77888888888877654 3456899999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhh
Q 027412 162 HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 211 (223)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 211 (223)
++ -|+.+...+...+...|++.+|...|+.|++. .|.......+++.
T Consensus 223 D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 223 DP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred CC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 76 58889999999999999999999999999985 4444455555544
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.61 E-value=8.1e-08 Score=45.60 Aligned_cols=33 Identities=58% Similarity=1.013 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc
Q 027412 169 TYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 169 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666555
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=3.7e-06 Score=58.94 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=49.9
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 027412 108 FKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAM 187 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 187 (223)
.+.++|++|+..|.++++.. |-|...|..-..+|.+.|.++.|++-.+..+..++ -...+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHHHH
Confidence 34455555555555555543 34444444555555555555555555555444433 13345555555555555555555
Q ss_pred HHHHHHHHCCCCCchhhHHHHhhhH
Q 027412 188 QLYDSMLRNGIMPDGLLLSTLADYN 212 (223)
Q Consensus 188 ~~~~~~~~~~~~p~~~~~~~l~~~~ 212 (223)
+.|++.++ +.|+..+|..=++..
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHHHH
Confidence 55555554 455555554444443
No 142
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.60 E-value=6.2e-05 Score=52.88 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI--TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (223)
+...+-.....+...|++++|...|+++....+..... ..-.++.++.+.+++++|...+++..+..|......+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 34444445556677899999999999998764432221 2245677888999999999999999988665433444444
Q ss_pred HHHHHh--h---------------CC---hhHHHHHHHHHHHCCCCCChhHH------------------HHHHHHHHhc
Q 027412 104 IDGYFK--S---------------QN---MKSAFDVYEEMCENNISPNIVSY------------------SILIDGLCKR 145 (223)
Q Consensus 104 ~~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~------------------~~l~~~~~~~ 145 (223)
+.+.+. . .| ..+|+..|+.+++. -|++.-. ..+...|.+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444321 1 12 23566777777765 2332211 2345567888
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 146 GLMEEALYAFHCALDNH--LLPDVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
|.+..|..-++.+.+.- ..........++.+|...|..++|..+...+.
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 89988888888888642 22345667778888888999888888776554
No 143
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.58 E-value=3.6e-05 Score=55.34 Aligned_cols=159 Identities=15% Similarity=0.105 Sum_probs=80.2
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHH
Q 027412 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116 (223)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (223)
+...|+...|+.....+.+.. +-|...+..-..+|...|++..|+.=++...+.... +..++..+...+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHH
Confidence 334455666666666665543 235555555566666666666666555555444333 444445555566666666666
Q ss_pred HHHHHHHHHCCCCCChhHHH----H-------H--HHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 027412 117 FDVYEEMCENNISPNIVSYS----I-------L--IDGLCKRGLMEEALYAFHCALDNHLLPD---VVTYAILIRGYCKA 180 (223)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~----~-------l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 180 (223)
+....+.++. .||..... . + +......++|.++++..+..++..+... ...+..+-.++...
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 6666665553 23322110 0 0 1112234455555555555544433211 12233444455556
Q ss_pred CCcchHHHHHHHHHHCCCCCc
Q 027412 181 GRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 181 g~~~~a~~~~~~~~~~~~~p~ 201 (223)
|++.+|++...+.++ +.||
T Consensus 321 ~~~~eAiqqC~evL~--~d~~ 339 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPD 339 (504)
T ss_pred CCHHHHHHHHHHHHh--cCch
Confidence 666666666666665 3454
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.57 E-value=1.4e-07 Score=44.52 Aligned_cols=32 Identities=47% Similarity=0.852 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC
Q 027412 169 TYAILIRGYCKAGRPTEAMQLYDSMLRNGIMP 200 (223)
Q Consensus 169 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 200 (223)
+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666655555
No 145
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.57 E-value=3.7e-05 Score=53.98 Aligned_cols=157 Identities=12% Similarity=0.107 Sum_probs=108.1
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH--hcC--
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPD--IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC--KEG-- 76 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~-- 76 (223)
.+.|++++|++.|+.+....+.+. ....-.++.++.+.+++++|...+++..+..+......+...+.+.+ ..+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 467999999999999988743322 12235667888999999999999999988754332233333333322 111
Q ss_pred -------------C---hhHHHHHHHHHHhcCCCccHH----------------HHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 77 -------------R---MDDATMMFSKMLEKGPKANVV----------------TYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 77 -------------~---~~~a~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
+ ..+|+..|+.+++.-|...-. .--.+.+.|.+.|.+..|..-++.+.
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 2 246778888888875542110 01235566889999999999999998
Q ss_pred HC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 125 EN--NISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 125 ~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+. +.+........++.+|...|..++|.++...+.
T Consensus 203 ~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 203 RDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 75 233445677888999999999999998876554
No 146
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.57 E-value=0.00011 Score=58.10 Aligned_cols=79 Identities=10% Similarity=0.142 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 027412 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88 (223)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (223)
.++++.+++..+.+.. |+.+...+.--|+..++.+.|.+...+..+.+...+...|..+...+.-.+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3455555555544322 222222333335555555566555555555544445555555555555555555555555443
No 147
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=6.4e-06 Score=57.98 Aligned_cols=143 Identities=18% Similarity=0.137 Sum_probs=81.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCC-------------CCh-----
Q 027412 71 AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS-------------PNI----- 132 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~----- 132 (223)
...+.|+++.|.+-|+...+.+--.....|+ +.-+..+.|+++.|++...+++++|++ ||+
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 3446778888888888777653332455666 444556667888888888887776653 111
Q ss_pred ----------hHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc
Q 027412 133 ----------VSYSILIDGLCKRGLMEEALYAFHCALDN-HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 133 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
..+|.-...+.+.++++.|.+.+..|.-. ....|+.|...+.-. -..+++.+..+-+.-++..+. ..
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CC
Confidence 12333344455777888887777766522 122355555554433 223445555555555554322 23
Q ss_pred hhhHHHHhhhHhhcC
Q 027412 202 GLLLSTLADYNLQSS 216 (223)
Q Consensus 202 ~~~~~~l~~~~~~~~ 216 (223)
..|+..++-.||++.
T Consensus 310 ~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 310 PETFANLLLLYCKNE 324 (459)
T ss_pred hHHHHHHHHHHhhhH
Confidence 456666666666653
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.56 E-value=3.4e-06 Score=50.44 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhc
Q 027412 146 GLMEEALYAFHCALDNHL-LPDVVTYAILIRGYCKAG--------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 215 (223)
+++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+|+.|+..+++|+..+|+.++..+++.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 444444444444444444 444444444444433321 1224556666677667777777777777666553
No 149
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.52 E-value=1.3e-05 Score=57.60 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=34.9
Q ss_pred CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhhCChhHHH
Q 027412 41 NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN---VVTYSCLIDGYFKSQNMKSAF 117 (223)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 117 (223)
++.+.|..+|+...+. +..+...|...++.+...++.+.|..+|++.... ..++ ...|...+..=.+.|+.+.+.
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3333455555544432 1223444444444444455555555555544433 1111 124444444444455555555
Q ss_pred HHHHHHHH
Q 027412 118 DVYEEMCE 125 (223)
Q Consensus 118 ~~~~~~~~ 125 (223)
.+.+.+.+
T Consensus 128 ~v~~R~~~ 135 (280)
T PF05843_consen 128 KVEKRAEE 135 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444444
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.52 E-value=4.9e-06 Score=49.75 Aligned_cols=79 Identities=23% Similarity=0.397 Sum_probs=60.3
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 027412 101 SCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNIVSYSILIDGLCKRG--------LMEEALYAFHCALDNHLLPDVVTYA 171 (223)
Q Consensus 101 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 171 (223)
...+..+...+++.....+|+.+++.|+ -|+..+|+.++.+..++. .+-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455566666888888888888888888 788888888888877653 2345677888888888888888888
Q ss_pred HHHHHHHh
Q 027412 172 ILIRGYCK 179 (223)
Q Consensus 172 ~l~~~~~~ 179 (223)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 151
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.7e-05 Score=58.08 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=101.3
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
.+.++++.|+..|.+.......|+ ...+....+++....+...-.++.. ..-...-...+.+.|++..|+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHH
Confidence 344555556666555443321211 1222333444444444443332221 112223366778899999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
..|.+++.++|. |...|.....+|.+.+.+..|+.--+..++.+ ++....|.--..++....++++|.+.|.+.++.+
T Consensus 379 ~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 379 KHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999877 89999999999999999999999988888875 5555666666777777889999999999988876
Q ss_pred C
Q 027412 163 L 163 (223)
Q Consensus 163 ~ 163 (223)
+
T Consensus 457 p 457 (539)
T KOG0548|consen 457 P 457 (539)
T ss_pred c
Confidence 3
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.51 E-value=2.7e-07 Score=43.71 Aligned_cols=31 Identities=39% Similarity=0.763 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCC
Q 027412 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (223)
Q Consensus 100 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 130 (223)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3333333333333333333333333333333
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=1.4e-05 Score=64.60 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 027412 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (223)
+...|+..|-+..+..+. -...|..|...|....+...|...|.+..+.+.. +...+..+...|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 355666666666555322 2557888888888888888899999888877533 67778888888999999998888843
Q ss_pred HHHhcCCC-ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 027412 87 KMLEKGPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLP 165 (223)
Q Consensus 87 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 165 (223)
..-+..+. .-...|....-.|...++...+...|+...+.+ |.|...|..++.+|...|++..|.++|.+.....+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~- 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL- 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-
Confidence 33222211 112334445566778888888888888888875 678888999999999999999999999887765431
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 166 DVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+...---....-+..|.+.++...+.....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 222222223334567888888887776654
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.00027 Score=56.84 Aligned_cols=190 Identities=18% Similarity=0.255 Sum_probs=110.0
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDII-TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
...+++..|+.....+.++. |+.. +-..=.-...+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 34567788888888777663 3321 1111122355677888888777776655544 777777777788888888888
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhH----HHHHHHHH----------------------------------
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS----AFDVYEEM---------------------------------- 123 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~---------------------------------- 123 (223)
..+|++.....| +......+..+|.+.+.+.+ |+++++..
T Consensus 97 ~~~Ye~~~~~~P--~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 97 VHLYERANQKYP--SEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHhhCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 888888777543 45555666667776666544 33333321
Q ss_pred ------HHCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 124 ------CENN-ISPNIVSYSILIDGLCKRGLMEEALYAFH-CALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 124 ------~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
.+.+ -..+..-.......+...|++++|++++. ...+.-..-+...-+.-+..+...++|.+..++..++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 1111 00001111112223335667777777773 233333333444445556667777888888888888877
Q ss_pred CC
Q 027412 196 NG 197 (223)
Q Consensus 196 ~~ 197 (223)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 64
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.49 E-value=3.9e-07 Score=42.90 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDNHLLP 165 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 165 (223)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555444443
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.47 E-value=8.2e-05 Score=57.98 Aligned_cols=140 Identities=13% Similarity=0.046 Sum_probs=100.7
Q ss_pred CCCcCHHHHHHHHHHHHhcC-----chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--------ChhHHHHHHHHH
Q 027412 22 GLEPDIITYNTIICGYCSLN-----RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG--------RMDDATMMFSKM 88 (223)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 88 (223)
..+.+...|...+++..... +...|..+|++..+..+. ....+..+..++.... +...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567788988888755432 377999999999987433 4455555544443321 123344444443
Q ss_pred Hhc-CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 027412 89 LEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL 164 (223)
Q Consensus 89 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (223)
... ....+...|..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++....++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 332 122356778888777788899999999999999965 68889999999999999999999999999887654
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.46 E-value=5.6e-05 Score=54.54 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCcc--
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILIDAFCKEGRMDDATMMFSKMLEK---GPKAN-- 96 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-- 96 (223)
...|......|...|++++|.+.|.+..+. +-.. -...|.....+|.+. ++++|++.+++.... .-.|+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 445777778888889999988888876432 2111 123455556666544 888999888877653 11222
Q ss_pred HHHHHHHHHHHHhh-CChhHHHHHHHHHHHC----CCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----
Q 027412 97 VVTYSCLIDGYFKS-QNMKSAFDVYEEMCEN----NISP--NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL----- 164 (223)
Q Consensus 97 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 164 (223)
...+..+...|... |++++|++.|++..+. + .+ -...+..++..+.+.|++++|.++|++.......
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 34677788888888 9999999999988743 2 11 1345677888899999999999999988764321
Q ss_pred CCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHC--CCCCc--hhhHHHHhhhHhh
Q 027412 165 PDVV-TYAILIRGYCKAGRPTEAMQLYDSMLRN--GIMPD--GLLLSTLADYNLQ 214 (223)
Q Consensus 165 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~ 214 (223)
.+.. .+...+-++...||+..|...+++.... ++..+ ......|+.++-.
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 2222 3334455667789999999999998764 23222 3355566666643
No 158
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.46 E-value=5.7e-05 Score=58.46 Aligned_cols=178 Identities=10% Similarity=0.005 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (223)
.|..++.+ ...+++...+++.+.+.... +-...+....+-.+...|+.++|....+.-.+.++. +.+.|..+.-.+.
T Consensus 10 lF~~~lk~-yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKC-YETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHH-HHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 34444443 35667777777777776532 223445555555556678888888888877776665 7778888888888
Q ss_pred hhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 027412 109 KSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQ 188 (223)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 188 (223)
..+++++|+.+|..+...+ +.|...+.-+.-.-.+.|+++..........+..+ .....|..++.++.-.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888775 66777777777777777888877777777766543 245567777778888888888888
Q ss_pred HHHHHHHCC-CCCchhhHHHHhhh
Q 027412 189 LYDSMLRNG-IMPDGLLLSTLADY 211 (223)
Q Consensus 189 ~~~~~~~~~-~~p~~~~~~~l~~~ 211 (223)
++++..+.. -.|+...+......
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~ 188 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELL 188 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHH
Confidence 888877653 24666666544443
No 159
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00015 Score=52.58 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=113.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
..+.++..|+.+++--...+-+-...+-.-+..++...|++++|...+..+.+.. .++...+..|.-++.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 4566788888888765543322222333445667788899999999998887644 556666766777777778888887
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
.+-.+. ++ ++..-..++....+.++-++-..+.+.+... ..--.++......+-++.+|++++.+.+..+
T Consensus 112 ~~~~ka----~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKA----PK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhC----CC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 766543 22 4444455556666677766666665555431 2223344444444557788888888777644
Q ss_pred CCCCHHHHHH-HHHHHHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 163 LLPDVVTYAI-LIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 163 ~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
|+....|. +.-+|.+..-++-+.++++-.++. .||+.
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt 219 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST 219 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH
Confidence 34444433 344556666666677777666653 44443
No 160
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.00019 Score=54.69 Aligned_cols=186 Identities=14% Similarity=0.170 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC---chhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN---RLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
-+++..++++....-..-+...|..+.+.--..- ..+.....++++...- ..|+ -+|..+++.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3556666666554322223334443333211111 2556667777765443 3333 357778888888888999999
Q ss_pred HHHHHHhcCCCc-cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 84 MFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
+|.+.++.+..+ ++...++++.-++ .++.+-|.++|+--.+. ...++.-....+..+...|+-..+..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999887766 6677777777666 57889999999987765 34556666788888999999999999999999874
Q ss_pred CCC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 163 LLP--DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 163 ~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
..| ....|..++.-=..-|+...+.++-+++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 443 4578999999999999999999888877654
No 161
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=9.1e-05 Score=62.25 Aligned_cols=194 Identities=15% Similarity=0.047 Sum_probs=114.8
Q ss_pred ccccCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CCC--C-cHHHHHHHHH
Q 027412 3 IKECHLDAALKLFGQLTDR----GLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLK--P-NSITFTILID 70 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~ 70 (223)
...|++++|...+++.... |.. .....+..+...+...|+++.|...+++.... +.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3568888888888877542 111 11234556667778889999988888776542 211 1 2233445566
Q ss_pred HHHhcCChhHHHHHHHHHHhc----CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC--CCCChhH----HHHHHH
Q 027412 71 AFCKEGRMDDATMMFSKMLEK----GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN--ISPNIVS----YSILID 140 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~----~~~l~~ 140 (223)
.+...|++++|...+.+.... +.......+..+...+...|++++|...++.+.... ....... ....+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 677779999998888776543 211123445556677788899998888888775421 0111000 011123
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 141 GLCKRGLMEEALYAFHCALDNHLLPD---VVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.+...|+.+.|..++........... ...+..+..++...|++++|...+.+....
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456777777777665443211111 111345666777888888888888777653
No 162
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.0002 Score=60.25 Aligned_cols=192 Identities=11% Similarity=0.038 Sum_probs=129.7
Q ss_pred cccCHHHHHHHHHHHhhCCC------CcC--HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcH----HHHHHHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGL------EPD--IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS----ITFTILIDA 71 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 71 (223)
..|++++|...+....+.-. .+. ......+...+...|++++|...+++..+.....+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 46788999888887654210 111 122233445667789999999999988753222221 345667777
Q ss_pred HHhcCChhHHHHHHHHHHhc----CC-CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC----CCC--C-ChhHHHHHH
Q 027412 72 FCKEGRMDDATMMFSKMLEK----GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NIS--P-NIVSYSILI 139 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~ 139 (223)
+...|++++|...+.+.... +. .....++..+...+...|++++|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 88899999999999887653 11 112345566778889999999999998887642 211 1 223455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 140 DGLCKRGLMEEALYAFHCALDN----HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
..+...|++++|...+.+.... +.......+..+.......|++++|...+.+...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7778889999999999887642 2111234555677788899999999999988854
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.1e-05 Score=53.18 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=80.8
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC---ChhHHHHHHHHHHHC
Q 027412 50 FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ---NMKSAFDVYEEMCEN 126 (223)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 126 (223)
++.-...+ +-|...|-.|...|...|+...|..-|.+..+..++ ++..+..+..++.... ...++..+|+++...
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 33334344 337788888888888888888888888888877554 6777777766665443 345678888888877
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 127 NISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 127 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
+ +.|..+...+...+...|++.+|...|+.|++..+
T Consensus 223 D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 223 D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 5 66777778888888888888888888888887654
No 164
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.40 E-value=0.00048 Score=53.73 Aligned_cols=194 Identities=16% Similarity=0.191 Sum_probs=105.0
Q ss_pred ccCHHHHHHHHHHHhhCCCCc------CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhc
Q 027412 5 ECHLDAALKLFGQLTDRGLEP------DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN---SITFTILIDAFCKE 75 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 75 (223)
.|+..+-+..|.++.+. +.| ....|..+...|-+.|+++.|..+|++......+-- ..+|......=.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45566666666666543 111 133567777777778888888888887765543211 23455555555566
Q ss_pred CChhHHHHHHHHHHhcCCC-----------------ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 027412 76 GRMDDATMMFSKMLEKGPK-----------------ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSIL 138 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 138 (223)
.+++.|.+++++....-.. .+...|..++..--..|-++....+++.+.+..+ .++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 6777777776665432110 0233455555555566666777777777765542 333444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCcchHHHHHHHHHHCCCCCc
Q 027412 139 IDGLCKRGLMEEALYAFHCALDNHLLPDV-VTYAILIRGYCK---AGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
...+-...-++++.++|++-...-..|+. ..|+..+.-+.+ ....+.|..+|++.++ |++|.
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 44444555566666666554443222332 244444443332 2335566666666666 44444
No 165
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=7.1e-05 Score=51.93 Aligned_cols=141 Identities=11% Similarity=0.019 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChh-----HHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIV-----SYSIL 138 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l 138 (223)
+.+.++.++...|.+.-...++.+.++.+++.++.....|++.-.+.||.+.|...|+...+..-..+.. +....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666777888888888888888777788888888888888888888888888665432233333 33334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHH
Q 027412 139 IDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLST 207 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 207 (223)
...|.-.+++..|...+.+....+. .++...|.-+-+..-.|+...|.+.++.|+.. .|...+-.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 4456666777788888877776655 36666666666677778888888888888874 555554443
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.00064 Score=54.80 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=89.8
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhH
Q 027412 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA--FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115 (223)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (223)
...+++.+|.....++.+. .|+.. |...+.+ ..+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3467889999999888766 34433 3334444 45789999999999988777666 88999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 116 AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
|..+|+.+... -|+......+..+|.+.+++.+-.+.--++-+
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886 46688888888888888877765544444433
No 167
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00016 Score=50.20 Aligned_cols=136 Identities=11% Similarity=0.040 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHH-----HH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS-----CL 103 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 103 (223)
+.+.++.++...|.+.-....+++.++...+.++.....|++.-.+.||.+.|...|++..+..-..+..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456777777888999999999999988877788999999999999999999999999877654333433333 34
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 027412 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLP 165 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 165 (223)
...+.-.+++..|...+.++...+ +.|....|.-.-+..-.|+..+|.+.++.+....+.|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 445667788999999999988776 6677778888878888999999999999999876544
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.38 E-value=4.7e-06 Score=46.29 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC-ChhHHHHHHHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-NMKSAFDVYEEMCE 125 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 125 (223)
.+|..+...+...|++++|+..|++..+.++. +...|..+..++...| ++++|+..+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34444555555555555555555555554443 4445555555555555 45555555554443
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.37 E-value=2.7e-05 Score=63.08 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhHHHHHH
Q 027412 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNSITFTILIDAFCKEGRMDDATMMF 85 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (223)
+...|.+.|+...+.+ ..+..........|++..+++.|..+.-..-+... ..-...|....-.|.+.++...++.-|
T Consensus 507 Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 5667889999888775 33677889999999999999999998544433211 111233444666778889999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 027412 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN---- 161 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 161 (223)
+...+.+|. |...|..++.+|.+.|.+..|.+.|.++...+ |.+...-.-..-.-+..|.+.++...+......
T Consensus 586 QsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 586 QSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE 663 (1238)
T ss_pred HHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999998887 99999999999999999999999999998753 333333333344466789999998888766532
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 162 --HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 162 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
+-..-..++-.+...+...|-..++..++++-
T Consensus 664 ~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 664 RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 11112234444444444445444444444443
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.37 E-value=6.6e-05 Score=54.17 Aligned_cols=188 Identities=15% Similarity=0.145 Sum_probs=114.8
Q ss_pred ccccCHHHHHHHHHHHhhC----CCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHh----CCCCCc--HHHHHHHHHH
Q 027412 3 IKECHLDAALKLFGQLTDR----GLEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTC----VQLKPN--SITFTILIDA 71 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~ 71 (223)
...|++++|.+.|.+.... +-+.+ ...|.....+|.+. ++++|+..+++..+ .| .|+ ...+..+...
T Consensus 46 k~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ 123 (282)
T PF14938_consen 46 KLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEI 123 (282)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHH
Confidence 3456777777777765332 11111 33455555555444 88888888887654 23 233 3467788888
Q ss_pred HHhc-CChhHHHHHHHHHHhc----CC-CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCC-----CCh-hHHHHHH
Q 027412 72 FCKE-GRMDDATMMFSKMLEK----GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS-----PNI-VSYSILI 139 (223)
Q Consensus 72 ~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~~l~ 139 (223)
|... |++++|.+.|++.... +. ..-...+..+...+.+.|++++|..+|++....... .+. ..+...+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 8888 8999999999887653 21 112346677888999999999999999998764322 122 1333445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 140 DGLCKRGLMEEALYAFHCALDNH--LLPD--VVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
-++...||+..|.+.+++..... +..+ ......|+.++ ..|+.+.......+.
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 56777899999999999987653 3222 34556666664 446655544444443
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.37 E-value=4e-06 Score=45.97 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=22.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 71 AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
.+.+.|++++|...|+++++..+. +...+..+..++...|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444444333 34444444444444444444444444443
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.35 E-value=3.8e-06 Score=46.66 Aligned_cols=63 Identities=27% Similarity=0.288 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 027412 97 VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG-LMEEALYAFHCALD 160 (223)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 160 (223)
..+|..+...+...|++++|+..|++..+.+ +.+...+..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455666666666666666666666666554 445556666666666666 56666666665554
No 173
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=7.8e-05 Score=57.16 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=112.6
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 027412 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (223)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (223)
-+=++.+...+++++|.....++...+ +.+...+..-+-+..+.+.+++|+.+.+.-... ..+...+..-+.+..+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 344566778899999999999999776 446667777778888999999999666543221 11112223345666789
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------------------
Q 027412 111 QNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL-------------------------- 164 (223)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------- 164 (223)
+..++|+..++-.. +.+..+...-.+.+.+.|++++|..+|+.+.+.+..
T Consensus 93 nk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred ccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 99999999998322 334557777888999999999999999999765432
Q ss_pred --C--CHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 165 --P--DVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 165 --~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
| +...+......++..|++.+|+++++..
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 1223334456678899999999999988
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.34 E-value=8.1e-05 Score=46.00 Aligned_cols=92 Identities=21% Similarity=0.155 Sum_probs=45.6
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCENNISPN--IVSYSILIDGLCKRGLMEEALYAFHCALDNHLL--PDVVTYAILIRGYC 178 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 178 (223)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++.....+. .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34445555666666666666655543332 234444555555666666666666555543221 01122233334555
Q ss_pred hcCCcchHHHHHHHHH
Q 027412 179 KAGRPTEAMQLYDSML 194 (223)
Q Consensus 179 ~~g~~~~a~~~~~~~~ 194 (223)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666665554443
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.32 E-value=1e-05 Score=44.37 Aligned_cols=61 Identities=23% Similarity=0.355 Sum_probs=46.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 027412 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (223)
+...+.+.|++++|...|+++.+..+. +...+..+..++...|++++|...|+++.+..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456677888888888888888877533 7777888888888888888888888888776543
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.30 E-value=3.2e-06 Score=46.80 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=32.6
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (223)
.+.|++++|+++|+.+.+..+. +..++..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456666666666666655322 5556666666666666666666666666655
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.29 E-value=0.0002 Score=44.25 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=40.9
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHh
Q 027412 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPN--SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFK 109 (223)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 109 (223)
..++-..|+.++|+.+|++..+.|.... ...+-.+...+...|++++|..++++.....+.+ +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444455555555555555555443322 2233444455555555555555555554432220 11111222334444
Q ss_pred hCChhHHHHHHHHH
Q 027412 110 SQNMKSAFDVYEEM 123 (223)
Q Consensus 110 ~~~~~~a~~~~~~~ 123 (223)
.|++++|+..+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555554443
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.28 E-value=2.9e-05 Score=52.32 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 027412 96 NVVTYSCLIDGYFKS-----QNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK 144 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (223)
+-.+|..++..+.+. |..+=....+..|.+.|+.-|..+|+.|++.+-+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 555666666665532 4455555556666666666666666666666654
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.26 E-value=5.6e-06 Score=45.83 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=18.1
Q ss_pred CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
|++++|+++|+++....|. +...+..++.+|.+.|++++|..+++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444443333333 33333333334444444444444443333
No 180
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.24 E-value=1.5e-06 Score=39.85 Aligned_cols=28 Identities=43% Similarity=0.698 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444455555555555555555444443
No 181
>PRK15331 chaperone protein SicA; Provisional
Probab=98.22 E-value=0.00039 Score=45.01 Aligned_cols=91 Identities=14% Similarity=0.022 Sum_probs=69.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL 147 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 147 (223)
...-+...|++++|..+|.-+...++. +..-|..|..++-..+++++|...|......+ ..|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 334445678888888888888777665 66777778888888888888888888777654 4566667777888888888
Q ss_pred HHHHHHHHHHHHh
Q 027412 148 MEEALYAFHCALD 160 (223)
Q Consensus 148 ~~~a~~~~~~~~~ 160 (223)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887776
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.21 E-value=0.00045 Score=47.29 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (223)
..+-.....+...|++.+|...|+.+....+. --....-.++.++.+.|+++.|...++++++..|.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 33444455566777888888888877654221 12344556777777788888888888887776554
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.19 E-value=0.00038 Score=47.67 Aligned_cols=166 Identities=19% Similarity=0.211 Sum_probs=92.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCC--cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhc--
Q 027412 2 LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI--TFTILIDAFCKE-- 75 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~-- 75 (223)
+...|++.+|++.|+.+....+. -...+.-.++.++.+.|+++.|...++++.+.-+..... ++-.++.++...
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 35689999999999999876322 235667788899999999999999999988764332222 222222222221
Q ss_pred ---------CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 76 ---------GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 76 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
+...+|...|+.++ .-|=.+.-..+|...+..+.+. . ...-..++..|.+.|
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRG 155 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT
T ss_pred cchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcc
Confidence 11223344444444 4443444444454444444321 0 111123566677888
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchH
Q 027412 147 LMEEALYAFHCALDNHLL--PDVVTYAILIRGYCKAGRPTEA 186 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a 186 (223)
.+..|..-++.+++.-+. ........++.++.+.|..+.+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 888888888777764321 1123556677777777776643
No 184
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00025 Score=58.07 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=94.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
.++-+++|..+|++.. .+..+.+.|+. .-++.++|.++-++.. .+..|..+..+-.+.|...+|++
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 3455677777776543 23334444443 2345555555544432 33456666666666666666665
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH------
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHC------ 157 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------ 157 (223)
-|-+. -|+..|..++..+.+.|.|++-.+++...++..-.|. +=+.++-+|++.++..+..+++.-
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i 1197 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANI 1197 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhH
Confidence 55332 1445566666666666666666666665555433333 224455555555555554443310
Q ss_pred ------HHhCC-------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcC
Q 027412 158 ------ALDNH-------LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 216 (223)
Q Consensus 158 ------~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 216 (223)
.-+.+ .-.+...|..+...+...|+++.|...-++. .+..||..+-.+|...+
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence 00000 0013344555666666666666665544332 34556666666665443
No 185
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.19 E-value=3.1e-06 Score=38.77 Aligned_cols=29 Identities=48% Similarity=0.922 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 027412 169 TYAILIRGYCKAGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 169 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 197 (223)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555555443
No 186
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.16 E-value=0.00039 Score=44.88 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 101 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
..++..+...|++++|..+.+.+.... |.+...+..++.+|...|+...|.+.|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555555443 444445555555555555555555555444
No 187
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.0018 Score=49.64 Aligned_cols=167 Identities=16% Similarity=0.222 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHH
Q 027412 43 LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE---GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (223)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 119 (223)
.+++..+++...+.-...+..+|..+.+.--.. ...+.....++++...-..--..+|..++....+..-.+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345555665554332222333343332221111 12556666777766543222345788899999999999999999
Q ss_pred HHHHHHCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 027412 120 YEEMCENNISP-NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGI 198 (223)
Q Consensus 120 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 198 (223)
|.++.+.+..+ ++.+.++++..|+. ++..-|.++|+--++.-. -++.-....+.-+...|+-..+..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~-d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG-DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999887666 67778888887775 588999999998665432 3455557788888999999999999999999877
Q ss_pred CCch--hhHHHHhhh
Q 027412 199 MPDG--LLLSTLADY 211 (223)
Q Consensus 199 ~p~~--~~~~~l~~~ 211 (223)
.|+. ..|..+++.
T Consensus 467 ~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEY 481 (656)
T ss_pred ChhhhHHHHHHHHHH
Confidence 7664 567776654
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.14 E-value=0.0002 Score=50.83 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=46.0
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 027412 108 FKSQNMKSAFDVYEEMCENNISPN---IVSYSILIDGLCKRGLMEEALYAFHCALDNHLL--PDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 182 (223)
.+.|++++|...|+.+.+.. |-+ ..++..+..+|...|++++|...|+.+.+..+. .....+..+..++...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 44456666666666665542 111 235555566666666666666666665543221 123344444555556666
Q ss_pred cchHHHHHHHHHH
Q 027412 183 PTEAMQLYDSMLR 195 (223)
Q Consensus 183 ~~~a~~~~~~~~~ 195 (223)
+++|..+|+++++
T Consensus 233 ~~~A~~~~~~vi~ 245 (263)
T PRK10803 233 TAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.00075 Score=44.57 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=71.2
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC-CCChhHHHH
Q 027412 59 KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNIVSYSI 137 (223)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 137 (223)
-|+..--..|..+..+.|+..+|...|.+...--.--|......+..+....+++..|...++.+.+.+. ..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4455555556666666677777776666665543334555566666666666666666666666665420 012234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 027412 138 LIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAM 187 (223)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 187 (223)
+.+.+...|.+.+|...|+...+.- |+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHH
Confidence 5666666666666666666666543 33333333344445555544443
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.11 E-value=8e-05 Score=50.23 Aligned_cols=105 Identities=15% Similarity=0.242 Sum_probs=70.5
Q ss_pred CcCHHHHHHHHHHHHhc-----CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHH
Q 027412 24 EPDIITYNTIICGYCSL-----NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98 (223)
Q Consensus 24 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (223)
..+..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.|++.+-+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 34667777777777654 5566666677777777877788888888777654 3322 11111111
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL 147 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 147 (223)
..- .-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 112 -----F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -----FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 123456788999999999999999999999999887765
No 191
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.10 E-value=0.0026 Score=49.89 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=131.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcC---HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC----------C-------c
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPD---IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK----------P-------N 61 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~ 61 (223)
|-..|+++.|..+|++..+-..+.- ..+|..-...=.+..+++.|+++.+.....--. | +
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 4467999999999999887643321 345666666666778899999988877532111 1 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-hhHHHHHHH
Q 027412 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-IVSYSILID 140 (223)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 140 (223)
...|...++.--..|-++....+++++....+- ++..--.....+-...-++++.+++++-+..=-.|+ ...|+..+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 335566666666678889999999999887554 444444455555666778888888887665422333 346666665
Q ss_pred HHHh---cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCch--hhHHHHhhh
Q 027412 141 GLCK---RGLMEEALYAFHCALDNHLLPDVV--TYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDG--LLLSTLADY 211 (223)
Q Consensus 141 ~~~~---~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~ 211 (223)
-+.+ ...++.|..+|++.++ +.+|... .|......=-+.|-...|+.++++... ++++.. ..|+..|.-
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKK 631 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 5554 2478899999999988 5534322 222222223345777788888887654 344432 355555443
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.09 E-value=0.00077 Score=43.51 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHH-----HCCCCCChhHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-----ENNISPNIVSYS 136 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 136 (223)
+...++..+...|++++|..+.+.+...+|- +...|..+|.++...|+...|.+.|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456667777899999999999999999876 89999999999999999999999999875 348888876644
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=98.08 E-value=0.00073 Score=43.79 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=77.7
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
...-+...|++++|..+|.-+...+ +.+..-+..|..++...+++++|...|......+. -|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 4555678899999999999998776 66788889999999999999999999998776554 355556678899999999
Q ss_pred cchHHHHHHHHHHC
Q 027412 183 PTEAMQLYDSMLRN 196 (223)
Q Consensus 183 ~~~a~~~~~~~~~~ 196 (223)
.+.|...|....+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999883
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.05 E-value=4.8e-05 Score=42.67 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=26.9
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
.|.+.+++++|..+++.+...+ |.+...+.....++.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455555555555555443 334444444555555555555555555554443
No 195
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.05 E-value=0.0024 Score=47.41 Aligned_cols=168 Identities=17% Similarity=0.119 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCccHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITFTILIDAFCK---EGRMDDATMMFSKMLEKGPKANVVTY 100 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (223)
..+...++-+|....+++..+++++.+.... +.-+...-.....++.+ .|+.++|++++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 4455566667999999999999999997652 11133334445566667 89999999999997666667789999
Q ss_pred HHHHHHHHhh---------CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC-HH---HHHHHH---HH-HHhCC-
Q 027412 101 SCLIDGYFKS---------QNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL-ME---EALYAF---HC-ALDNH- 162 (223)
Q Consensus 101 ~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-~~~~~- 162 (223)
..+.+.|-.. ...++|...|.+.-+. .|+...=-+++..+...|. .+ +..++- .. ..+.|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 9888887532 2366788888877664 3544332223333333332 22 222222 11 11222
Q ss_pred --CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 163 --LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 163 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
...+...+.+++.++.-.|++++|.+..++|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3357778889999999999999999999999986
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=0.00041 Score=49.28 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhhCChhHHHHHHHHHHHCC--CCCChhHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--VVTYSCLIDGYFKSQNMKSAFDVYEEMCENN--ISPNIVSYSILI 139 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 139 (223)
.|......+.+.|++++|...|+.+.+..|... ...+..+..+|...|++++|...|+.+.+.- -+.....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556788888888888877665421 3456667777888888888888888877541 112244555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 027412 140 DGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
.++...|+.++|.+.|+...+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 67777888888888888777654
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.01 E-value=8.6e-05 Score=41.64 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=35.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 70 DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
..|.+.+++++|.++++.+...+|. ++..|.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666666555 5566666666666666666666666666654
No 198
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00086 Score=54.06 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=68.0
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH----------HhcCC---------CccH
Q 027412 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM----------LEKGP---------KANV 97 (223)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~~---------~~~~ 97 (223)
|-..|.|++|.++-+.--+.. -..||..-..-+-..++.+.|++.|++. +...| ..+.
T Consensus 836 yQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 836 YQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE 912 (1416)
T ss_pred HHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence 444555666655544322111 1234444444455556666666665532 11111 0122
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 027412 98 VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGY 177 (223)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (223)
..|.--..-.-..|+.+.|+.+|..+.. |..+++..+-+|+.++|-++-++- .|......+.+.|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHh
Confidence 2333333333445555555555544432 233334444444444444443321 2555666677778
Q ss_pred HhcCCcchHHHHHHHHH
Q 027412 178 CKAGRPTEAMQLYDSML 194 (223)
Q Consensus 178 ~~~g~~~~a~~~~~~~~ 194 (223)
-..|++.+|...|.+..
T Consensus 978 En~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 88888888877776654
No 199
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00065 Score=54.71 Aligned_cols=175 Identities=17% Similarity=0.116 Sum_probs=106.2
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC---------CCCcHHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---------LKPNSITFTILIDAF 72 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~ 72 (223)
|...|+.+.|.+-++-+. +..+|..+.+.|.+..+++-|.-.+-.|.... ..|+ .+-....-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 455688888877776655 45689999999999888887766555543210 1121 1111222333
Q ss_pred HhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 027412 73 CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
.+.|.+++|+.+|++-.+ |..|=+.|-..|.+++|.++-+.--+.. -..||......+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 466788888888876543 2334455666777887777765433322 2346666666666677777777
Q ss_pred HHHHHHH----------hCCC---------CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 153 YAFHCAL----------DNHL---------LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 153 ~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+.|++.- ...+ ..+...|......+-..|+.+.|+.+|....+
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 7776432 1111 12445566666666677777777777766553
No 200
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.92 E-value=0.00039 Score=55.33 Aligned_cols=104 Identities=20% Similarity=0.310 Sum_probs=64.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
....|.+|+.+++.+..+. .-..-|..+.+-|+..|+++.|.++|-+.- .++-.+.+|.+.|+|+.|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 3456777777777766652 223346667777777777777777775431 24456677777888887777
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHH
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 120 (223)
+-.+.. |+......|..-..-.-..|++.+|.+++
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 765442 34444555555555555666666655554
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.83 E-value=0.00015 Score=41.26 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-cc-HHHHHHHHHHHHhhCChhHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEK----GPK-AN-VVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 123 (223)
+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..++...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443321 110 11 233444444444444444444444443
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.79 E-value=0.0081 Score=46.69 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=107.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCcH------HHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCccHHHHH
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNS------ITFTILIDAFCK----EGRMDDATMMFSKMLEKGPKANVVTYS 101 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (223)
.++....=.|+-+.+++.+.+..+.+--..+ -.|+..+..++. ..+.+.|.++++.+.++-|+ +....-
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~-s~lfl~ 271 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN-SALFLF 271 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 3334445578889999999887654311121 234444444443 34678899999999987654 333334
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHCC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH
Q 027412 102 CLIDGYFKSQNMKSAFDVYEEMCENN---ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILI-RGY 177 (223)
Q Consensus 102 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~ 177 (223)
.-.+.+...|+.++|++.|+...... -+.....+--+...+.-.++|++|.+.|..+.+..- .+...|..+. .++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 45678888999999999999766321 122334556677778889999999999999987543 3445554443 335
Q ss_pred HhcCCc-------chHHHHHHHHHH
Q 027412 178 CKAGRP-------TEAMQLYDSMLR 195 (223)
Q Consensus 178 ~~~g~~-------~~a~~~~~~~~~ 195 (223)
...|+. ++|.++|.+...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 567777 888888887653
No 203
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.78 E-value=0.00015 Score=41.23 Aligned_cols=62 Identities=26% Similarity=0.274 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHC----CC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 98 VTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NI-SPN-IVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666665532 10 011 3355556666666666666666665543
No 204
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.77 E-value=0.0023 Score=51.21 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=32.7
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 027412 107 YFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEA 186 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 186 (223)
....++|.+|+.+++.+.... .-...|..+...|...|+++.|.++|-+. ..++-.+..|.+.|+|+.|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 334444555555555444332 12223444444555555555555544321 1223334444455555555
Q ss_pred HHHHHH
Q 027412 187 MQLYDS 192 (223)
Q Consensus 187 ~~~~~~ 192 (223)
.++-++
T Consensus 811 ~kla~e 816 (1636)
T KOG3616|consen 811 FKLAEE 816 (1636)
T ss_pred HHHHHH
Confidence 444443
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0017 Score=48.00 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=76.2
Q ss_pred HHHHHhcCchhHHHHHHHHHHhC-----CCCC---------cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHH
Q 027412 34 ICGYCSLNRLDEAVQLFEKLTCV-----QLKP---------NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99 (223)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (223)
...+.+.|++..|..-|++.... +.++ -..++..+..++.+.+++..|++..++.+..++. |.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence 34677778888888777775432 1111 1234566677777777777777777777776654 6666
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH-HHHHHHHHHHh
Q 027412 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLME-EALYAFHCALD 160 (223)
Q Consensus 100 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~ 160 (223)
..--..++...|+++.|+..|+++.+.. |.|..+-+.++..-.+..... ...++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556777777777777777777777653 444444455554444433333 33556666653
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.72 E-value=0.0017 Score=40.60 Aligned_cols=83 Identities=10% Similarity=-0.016 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC---------------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN---------------ISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
|..++..++.++++.|+.+....+++..-..+ ..|+..++.+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35677888888888888888888887665332 124444555555555555555555555554432
Q ss_pred -CCCCCCHHHHHHHHHHHH
Q 027412 161 -NHLLPDVVTYAILIRGYC 178 (223)
Q Consensus 161 -~~~~~~~~~~~~l~~~~~ 178 (223)
.+++.+..+|..|++-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 233334445555544433
No 207
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0048 Score=51.11 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=62.0
Q ss_pred cCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 027412 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (223)
+++++|.+.-++.- .+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.|++-.+++
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45556655544432 3456777777777777777777666543 25566777777777777777777777
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHH
Q 027412 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 119 (223)
.-.++...+|... +.|+-+|++.++..+..++
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 6555554444333 4466667766666554443
No 208
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0023 Score=47.35 Aligned_cols=128 Identities=19% Similarity=0.153 Sum_probs=97.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc-----CCC---------ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCh
Q 027412 67 ILIDAFCKEGRMDDATMMFSKMLEK-----GPK---------ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132 (223)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 132 (223)
.-.+.|.+.|++..|...|++.... +.+ .-..+++.+..++.+.+++.+|+..-.+.+..+ ++|+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3455678889999998888875442 111 123467889999999999999999999999887 8888
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHC
Q 027412 133 VSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE-AMQLYDSMLRN 196 (223)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 196 (223)
-.+.--..++...|+++.|+..|+++.+..+ .|...-+.++.+-.+..++.+ ..++|..|...
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998765 355555666665555554443 46777777653
No 209
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.68 E-value=0.0079 Score=41.98 Aligned_cols=174 Identities=21% Similarity=0.223 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
...|+.. ..-.+.|++++|.+.|+.+....+ +-...+.-.++.++.+.+++++|+..+++..+..|......|...+
T Consensus 35 ~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3344444 446678999999999999986531 2234566677788889999999999999999987765555566666
Q ss_pred HHHHhh-------CChhH---HHHHHHHHHHC----CCCCChhHH------------HHHHHHHHhcCCHHHHHHHHHHH
Q 027412 105 DGYFKS-------QNMKS---AFDVYEEMCEN----NISPNIVSY------------SILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 105 ~~~~~~-------~~~~~---a~~~~~~~~~~----~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
.+.+.. .|... |..-|++++.. ...+|...- ..+.+.|.+.|.+..|..-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 665532 23333 44445555543 111222211 34567889999999999999999
Q ss_pred HhCCC--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 159 LDNHL--LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 159 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
.+.-. ......+-.+..+|...|-.++|...-.-+... .|+..
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~ 238 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ 238 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence 98621 112346677888899999999998887766653 45543
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.67 E-value=0.0018 Score=48.91 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV---VTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
+...++.+..+|...|++++|+..|++.++.++. +. .+|..+..+|...|+.++|+..++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445666666666666666666666666665444 22 23555666666666666666666666553
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.67 E-value=0.0036 Score=47.37 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=69.4
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS--ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (223)
.+...++.+..+|...|++++|+..|++..+.++.... .+|..+..+|...|+.++|+..+++.++.+ . ..|..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~~ 148 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFST 148 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHHH
Confidence 35778999999999999999999999999887543221 458889999999999999999999998752 1 12221
Q ss_pred HHH--HHHhhCChhHHHHHHHHHHHCC
Q 027412 103 LID--GYFKSQNMKSAFDVYEEMCENN 127 (223)
Q Consensus 103 l~~--~~~~~~~~~~a~~~~~~~~~~~ 127 (223)
+.. .+....+..+..++++.+.+-|
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 111 1112233345666666666655
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=97.62 E-value=0.016 Score=44.04 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=111.6
Q ss_pred HHH--HHHHHHHHhcC-----chhHHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 027412 28 ITY--NTIICGYCSLN-----RLDEAVQLFEKLTCV-QLKPN-SITFTILIDAFCK---------EGRMDDATMMFSKML 89 (223)
Q Consensus 28 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 89 (223)
..| ...+++..... ..+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55555544422 356788899998822 12443 4455555444433 233557778888888
Q ss_pred hcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH
Q 027412 90 EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPD-VV 168 (223)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 168 (223)
+.++. |......+..+....++++.+...|++....+ |....+|........-.|+.++|.+.+++..+..+..- ..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 88876 88888888888899999999999999999875 55667788888888889999999999999877653221 22
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 169 TYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 169 ~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
.....+..|+..+ .+.|++++-+-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 2333344566544 67777776543
No 213
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.0056 Score=44.42 Aligned_cols=152 Identities=12% Similarity=-0.047 Sum_probs=97.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC-C--CCCcHHHHHHHHHHHHhcCChhH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-Q--LKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
.+|++.+|-..++++.+. .|.|..++..-=+++.-.|+.+.....++++... + .+-.+.+-....-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356677777777777765 3456667777777777788887777777777543 1 11122333344455567788888
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN---ISPNIVSYSILIDGLCKRGLMEEALYAFHC 157 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (223)
|++.-++..+.+.. |...-..+...+-..++.+++.++..+-...- .-.-...|-...-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888888777655 66777777777777888888887776544321 011122333444455666788888888775
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.58 E-value=0.0044 Score=39.30 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=36.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 127 (223)
-.....+.|++++|.+.|+.+..+-|.. ...+-..++.+|.+.+++++|...++..++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4444456677777777777776653321 23344556667777777777777777776653
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.57 E-value=0.0047 Score=38.65 Aligned_cols=84 Identities=10% Similarity=0.074 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---------------CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKG---------------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
..++..++.++++.|+.+....+++..-..+ ..|+..+..+++.+|+..+++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4455666666666666666666665542211 2355666666666666666666666666665532
Q ss_pred -CCCCChhHHHHHHHHHHhc
Q 027412 127 -NISPNIVSYSILIDGLCKR 145 (223)
Q Consensus 127 -~~~~~~~~~~~l~~~~~~~ 145 (223)
+++.+..+|..|+.-....
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 4555556666666554433
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.56 E-value=0.0095 Score=39.59 Aligned_cols=127 Identities=15% Similarity=0.121 Sum_probs=63.4
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-ccHHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK-ANVVTYSCL 103 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 103 (223)
|+......|.....+.|+..+|...|++...--+-.|....-.+.++....+++..|...++.+.+.++. .++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444445555555555666666655555553333344555555555555555555555555555543221 122233344
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 027412 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALY 153 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 153 (223)
.+.+...|.+..|...|+..... -|+..........+.++|+.+++..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 55555555555555555555542 3444444444444455554444433
No 217
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.55 E-value=0.015 Score=41.94 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=103.4
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHH-------HHHHhcC-chhHHHHHHHHHHhC--------CCCCcH----
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTII-------CGYCSLN-RLDEAVQLFEKLTCV--------QLKPNS---- 62 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 62 (223)
.+.|+++.|..++.+........++.....+. ....+.+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46899999999999987643122222222232 3333455 888888887776443 122332
Q ss_pred -HHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 027412 63 -ITFTILIDAFCKEGRM---DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSIL 138 (223)
Q Consensus 63 -~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 138 (223)
.+...++.+|...+.. ++|.++++.+....+. .+..+..-+..+.+.++.+.+.+.+..|...- ......+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 4677788888887764 4566677777665554 45666667777778899999999999999762 3244555555
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHhCCCCCCHH
Q 027412 139 IDGLCK--RGLMEEALYAFHCALDNHLLPDVV 168 (223)
Q Consensus 139 ~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~ 168 (223)
+..+.. ......+...+..+....+.|+..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 555522 233456777777766555545543
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.0097 Score=43.71 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK 144 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (223)
.+..+.-+...|+...|.++-.+. --|+...|-..+.+++..++|++...+-.. .-++.-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 344455666778888888887666 236888999999999999999987776432 2245788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 027412 145 RGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDS 192 (223)
Q Consensus 145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 192 (223)
.|...+|..++.++ ++ ..-+..|.+.|++.+|.+...+
T Consensus 250 ~~~~~eA~~yI~k~------~~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI------PD----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC------Ch----HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999888662 22 4456677888888888766433
No 219
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.01 Score=43.12 Aligned_cols=154 Identities=13% Similarity=0.022 Sum_probs=109.2
Q ss_pred hcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CC--CccHHHHHHHHHHHHhhCChhH
Q 027412 39 SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK-GP--KANVVTYSCLIDGYFKSQNMKS 115 (223)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~ 115 (223)
..|++.+|-..++++.+.- +.|...+..-=++|.-.|+.+.....++++... +. +-....-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3566777777777777553 447777777778888889988888888888765 22 1122333445556678899999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 027412 116 AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH---LLPDVVTYAILIRGYCKAGRPTEAMQLYDS 192 (223)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 192 (223)
|.+.-++..+.+ +.|.-...++...+.-.|+..++.+++.+-...- ...-...|-...-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999998876 6777778888888888999999998887654321 111123344455567788999999999975
Q ss_pred HH
Q 027412 193 ML 194 (223)
Q Consensus 193 ~~ 194 (223)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 44
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.011 Score=44.11 Aligned_cols=161 Identities=16% Similarity=0.090 Sum_probs=105.2
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc-----------HHHHHH
Q 027412 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN-----------VVTYSC 102 (223)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ 102 (223)
..++...|+.++|.+.--...+.+.. +......=..++.-.++.+.+...|++.++.+|... ...+..
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 35666778888888887777765422 333333333344456778888888888877655321 112333
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCENN---ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCK 179 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
-..-..+.|.+..|.+.|.+.+..+ +.++...|.....+..+.|+..+|+.-.+...+.+. .-...+..-..++.-
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHH
Confidence 3344567788888888888887642 344556677777778888888888888877776432 122344444556677
Q ss_pred cCCcchHHHHHHHHHHC
Q 027412 180 AGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 180 ~g~~~~a~~~~~~~~~~ 196 (223)
.++|++|.+-+++..+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 78888888888888775
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.41 E-value=0.00063 Score=33.85 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHH
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (223)
+..+...|.+.|++++|+++|++.++..|. |...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 344445555555555555555555554443 444443
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.0018 Score=48.17 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=37.7
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcC----HHHHHHHHHHHHhcCchhHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPD----IITYNTIICGYCSLNRLDEAVQLFE 51 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 51 (223)
+++.|+...-+.+|+..++.|-. | ..+|..|..+|.-.+++++|+++..
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 57889999999999999988744 3 3456677777777888888887654
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.33 E-value=0.034 Score=42.87 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=93.7
Q ss_pred ccCHHHHHHHHH--HHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 5 ECHLDAALKLFG--QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 5 ~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
+|+++.+.+... ++.. ..+....+.++..+-+.|-.+.|+.+.. |+.+ -.....+.|+++.|.
T Consensus 274 ~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIAL 338 (443)
T ss_dssp TT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHH
T ss_pred cCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHHH
Confidence 355666555554 1221 1124456777777778888888776643 2221 234455678888887
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
++.++. .+...|..|...+.+.|+++-|...|++.. -+..|+-.|.-.|+.+...++.+.....|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 765442 367799999999999999999999998754 24566677888888888888887776654
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 027412 163 LLPDVVTYAILIRGYCKAGRPTEAMQLYDS 192 (223)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 192 (223)
- ++....++.-.|+.++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 44555566667888877776654
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.0095 Score=41.91 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISP---NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL--PDVVTYAIL 173 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 173 (223)
.|+.-+. +.+.|++..|...|...++.. |. ....+..|..++...|+++.|...|..+.+.-+. .-+.++--+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4665444 456678999999999998763 32 3457788999999999999999999998865332 235677888
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCch
Q 027412 174 IRGYCKAGRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 174 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
..+..+.|+.++|..+|+++.+. -|+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence 88899999999999999999986 4543
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.026 Score=39.24 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=108.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcC------HHHHHHHHHHHHhcCchhHHHHHHHHHH----hCCCCCcHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPD------IITYNTIICGYCSLNRLDEAVQLFEKLT----CVQLKPNSITFTILIDA 71 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~ 71 (223)
|...+++++|...+.+..+- .+.+ ..+|...+...-....+.++..++++.. +.| .|++.... |-.+
T Consensus 41 fRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtAAma-leKA 117 (308)
T KOG1585|consen 41 FRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTAAMA-LEKA 117 (308)
T ss_pred HHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchHHHH-HHHH
Confidence 44566777777777666531 1111 2234455555555667777777777753 234 44544321 2121
Q ss_pred --HHhcCChhHHHHHHHHHHhc---CC--CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-----CCCCChhHHHHHH
Q 027412 72 --FCKEGRMDDATMMFSKMLEK---GP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-----NISPNIVSYSILI 139 (223)
Q Consensus 72 --~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 139 (223)
..+.-++++|++++.+.... +- +.-...+....+.+.+...+++|-..+.+-... ....--..+-..|
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~i 197 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAI 197 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHH
Confidence 23456788888888776543 11 112345666777788888888877666554321 1111123456666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 027412 140 DGLCKRGLMEEALYAFHCALDNH---LLPDVVTYAILIRGYCKAGRPTEAMQLY 190 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 190 (223)
..+.-..++..|.+.++...+.+ -..+..+...|+.+|- .|+.+++..++
T Consensus 198 lv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 198 LVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 67777889999999998754332 1235667888888764 47777766554
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.29 E-value=0.0049 Score=43.66 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=21.1
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHhhhHhhcC
Q 027412 186 AMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 216 (223)
Q Consensus 186 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 216 (223)
++.++++|...|+.||..+-..|+.++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 5667777777777777777777777665543
No 227
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.043 Score=41.13 Aligned_cols=173 Identities=14% Similarity=0.001 Sum_probs=109.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH-------------HHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI-------------TFTIL 68 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l 68 (223)
+.-.|++++|.+.-....+... .+......=..++.-.++.+.+...|++.+..+ |+.. .+..=
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 3445677777777766665531 122222222234445678889999999887664 3322 22223
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC---CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGP---KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR 145 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (223)
..-..+.|.+..|.+.+.+.+..+| .++...|.....+..+.|+.++|+.--++..+.+ +.-...+..-..++...
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHH
Confidence 3445678999999999999887654 4556677778888889999999999888887653 11223344445566678
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 027412 146 GLMEEALYAFHCALDNHLLP-DVVTYAILIRGYC 178 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 178 (223)
++|++|.+-++...+..-.+ ...++.....++-
T Consensus 335 e~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 89999999998887654322 2334444433433
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.29 E-value=0.043 Score=41.05 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=102.3
Q ss_pred cccccCHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHHHh---cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-
Q 027412 2 LIKECHLDAALKLFGQLTDRG---LEPDIITYNTIICGYCS---LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK- 74 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 74 (223)
|....+++..+++++.+.... +.-...+-...+-++.+ .|+.++|.+++..+......+++.++..++..|-.
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 556678999999999987651 22233444455566777 89999999999996666667889999988888743
Q ss_pred --------cCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCC-hh---HHHHHH---HH-HHHCCC---CCChhHH
Q 027412 75 --------EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN-MK---SAFDVY---EE-MCENNI---SPNIVSY 135 (223)
Q Consensus 75 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-~~~~~~---~~~~~~~ 135 (223)
....++|...|.+.-+.. |+...=-.++..+...|. .+ +..++- .. +.+.|. ..+-..+
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ 308 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDV 308 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHH
Confidence 223677888887776543 333221222222222332 21 222222 11 112332 2344566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 136 SILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 136 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
..++.+..-.|+.++|.+..++|.+..
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 788999999999999999999998764
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=97.27 E-value=0.051 Score=41.51 Aligned_cols=146 Identities=11% Similarity=0.107 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHhhC-CCCcC-HHHHHHHHHHHHh---------cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 027412 7 HLDAALKLFGQLTDR-GLEPD-IITYNTIICGYCS---------LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (223)
..+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.++.++..+.+.. |+.+...+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 456788999998821 22444 4455555544433 23456788888888888744 888888888888888
Q ss_pred CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCCHHHHH
Q 027412 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---VSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~ 152 (223)
++++.|...|++....+|. ...+|........-.|+.++|.+.+++..+. .|.. ......+..|+.. ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 9999999999999998876 6778887888888899999999999998775 3432 2333344466655 467777
Q ss_pred HHHHH
Q 027412 153 YAFHC 157 (223)
Q Consensus 153 ~~~~~ 157 (223)
+++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77754
No 230
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.21 E-value=0.034 Score=38.22 Aligned_cols=89 Identities=22% Similarity=0.170 Sum_probs=37.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCC
Q 027412 71 AFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-NIVSYSILIDGLCKRGL 147 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 147 (223)
.+...|+++.+...+.+.....+ ......+......+...++++.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 34444555555555544433211 0122222222233344444555555554444432 22 23444444444444444
Q ss_pred HHHHHHHHHHHHh
Q 027412 148 MEEALYAFHCALD 160 (223)
Q Consensus 148 ~~~a~~~~~~~~~ 160 (223)
++.+...+.....
T Consensus 218 ~~~a~~~~~~~~~ 230 (291)
T COG0457 218 YEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555444443
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.047 Score=39.06 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=103.5
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCC
Q 027412 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (223)
-.......|++.+|..+|....+.... +...--.+..+|...|+.+.|..++..+-.............-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334567788899999999888876544 4555666888899999999999998876543322222333334555555555
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 027412 113 MKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN--HLLPDVVTYAILIRGYCKAGRPTEAMQLY 190 (223)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 190 (223)
..+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+++. +. -|...-..++..+.-.|.-+.+...+
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555555442 557778888888888999999998877776644 33 35566677777777777555444433
Q ss_pred H
Q 027412 191 D 191 (223)
Q Consensus 191 ~ 191 (223)
+
T Consensus 296 R 296 (304)
T COG3118 296 R 296 (304)
T ss_pred H
Confidence 3
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.14 E-value=0.045 Score=38.37 Aligned_cols=157 Identities=15% Similarity=0.194 Sum_probs=106.4
Q ss_pred ccccCHHHHHHHHHHHhhCCC--CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh------
Q 027412 3 IKECHLDAALKLFGQLTDRGL--EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK------ 74 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 74 (223)
.+.|++++|.+.|+.+..+.+ +-...+.-.++-++.+.++++.|+..+++.....+......|-.-|.+.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 467999999999999987632 223556677788889999999999999999876533333334334444332
Q ss_pred -cCCh---hHHHHHHHHHHhcCCC----ccHHH-----------H-HHHHHHHHhhCChhHHHHHHHHHHHCCCCCC---
Q 027412 75 -EGRM---DDATMMFSKMLEKGPK----ANVVT-----------Y-SCLIDGYFKSQNMKSAFDVYEEMCENNISPN--- 131 (223)
Q Consensus 75 -~~~~---~~a~~~~~~~~~~~~~----~~~~~-----------~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 131 (223)
..|. ..|..-|+.++++-|. ||... + ..+.+.|.+.|.+..|..-++.+.+. .+-+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~ 203 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAV 203 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccch
Confidence 2233 3455555566655332 12111 1 23567788999999999999999986 3333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 132 IVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
...+-.+..+|...|-.++|.+.-.-+..
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34566777889999999998887665544
No 233
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.08 E-value=0.0031 Score=31.34 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 100 YSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 100 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
+..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444555555555555544443
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.021 Score=40.21 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ccHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSC 102 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 102 (223)
...|+.-+. +.+.|++..|...|....+..+. -....+..|+.++...|++++|..+|..+.+..++ .-+..+.-
T Consensus 142 ~~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 446777666 55678899999999999876422 12345666999999999999999999999886443 13467778
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHC
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
|..+..+.|+.++|...|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 889999999999999999999876
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.06 E-value=0.03 Score=34.98 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=71.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChh---HHHHHHHHHHhc
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIV---SYSILIDGLCKR 145 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 145 (223)
.-+....|+.+.|++.|.+.+..-|+ ....||.-..++.-.|+.++|++-+++..+..-+.+.. .|-.-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34566788999999999988887666 78889999999999999999999888887653222322 344445567788
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 027412 146 GLMEEALYAFHCALDNHL 163 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~ 163 (223)
|+.+.|..-|+...+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 899999988888877764
No 236
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.06 E-value=0.078 Score=40.42 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
+|...++.-.+..-.+.|..+|-+..+.+ ..+++..+++++..++ .|++.-|..+|+--... .+.+....+-.+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 56667777777777889999999998887 5667788888887665 57889999999877664 233344446677778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhh
Q 027412 143 CKRGLMEEALYAFHCALDNHLLP--DVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 211 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 211 (223)
...++-+.|..+|+..... +.. -...|..++..=..-|+...+..+-+++.+ +.|...+.......
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sr 544 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSR 544 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHH
Confidence 8889999999999865532 111 246788888888888888888887777776 35555444444333
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.06 E-value=0.034 Score=35.54 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=21.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (223)
.++..+.+.+.......+++.+...+. .+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444444555555555555554432 3444555555555543
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.04 E-value=0.031 Score=34.89 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=74.2
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhc
Q 027412 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVV---TYAILIRGYCKA 180 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 180 (223)
..+....|+.+.|++.|.+.+.. .|.....||.-.+++.-.|+.++|+.-+++..+..-..+.. .|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 45677899999999999999886 36788999999999999999999999999988753222322 344444557888
Q ss_pred CCcchHHHHHHHHHHCC
Q 027412 181 GRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 181 g~~~~a~~~~~~~~~~~ 197 (223)
|+-+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999998877765
No 239
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=97.02 E-value=0.018 Score=41.18 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH-----CCCCCchhhHHHH
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR-----NGIMPDGLLLSTL 208 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 208 (223)
++..++..+...|+++.+.+.++++....+ -+...|..++.+|...|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 456667777777888888888888877766 4777788888888888888888888777664 3777777766666
Q ss_pred hhh
Q 027412 209 ADY 211 (223)
Q Consensus 209 ~~~ 211 (223)
.+.
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.86 E-value=0.037 Score=37.03 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCC---CChhHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS---PNIVSYSI 137 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ 137 (223)
..+..+...|.+.|+.+.|.+.|.++......+ -...+..+++.....+++..+...+.++...--. ++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778888888888888888888887764433 2345666778888888888888887776643111 11111111
Q ss_pred H--HHHHHhcCCHHHHHHHHHHHH
Q 027412 138 L--IDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 138 l--~~~~~~~~~~~~a~~~~~~~~ 159 (223)
. .-.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 112334677777777776554
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.84 E-value=0.024 Score=40.36 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC----------------ChhHHHH
Q 027412 60 PNSITFTILIDAFCK-----EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ----------------NMKSAFD 118 (223)
Q Consensus 60 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 118 (223)
.|..+|-..+..+.. .+..+-....++.|.+-|+..|..+|+.|+..+-+.. +-+-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 355555555555543 2445555555666666677667777777766654322 1122444
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 119 VYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
++++|...|+.||..+-..+++++.+.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4555555555555555555555544444
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.83 E-value=0.056 Score=34.44 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
...+-.-.....+.|++++|.+.|+.+...-+ +-...+.-.|+.+|.+.+++++|...+++.++.+|......|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34444445556788999999999999986632 2234566778999999999999999999999988775556666666
Q ss_pred HHHHhhCC
Q 027412 105 DGYFKSQN 112 (223)
Q Consensus 105 ~~~~~~~~ 112 (223)
.++....+
T Consensus 90 ~gL~~~~~ 97 (142)
T PF13512_consen 90 RGLSYYEQ 97 (142)
T ss_pred HHHHHHHH
Confidence 66655443
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.03 Score=44.84 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
|++++|.++|-.+.++ ...+..+.+.|+|-.+.++++.=-.. .-..-..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544433 12344455556666555554431100 0001124566666666666666666666
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (223)
+..-. +. ...+.++.+..++++...+... ++.+....-.+..++...|.-++|.+.+-
T Consensus 819 Y~~~~------~~---e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 819 YSYCG------DT---ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHhcc------ch---HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 65421 11 1234444444444443333332 34455556666666666666666666553
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.80 E-value=0.17 Score=39.57 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=74.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHH-HHHHHHHhcCchhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHHhcCChhH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYN-TIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
....+.|.++++.+.++ -|+...|. .-.+.+...|++++|++.|++..... .+.....+--++-++.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677788888888876 44544443 44566777888888888888765321 11122334456666777788888
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHH-HHHHhhCCh-------hHHHHHHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLI-DGYFKSQNM-------KSAFDVYEEMC 124 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~ 124 (223)
|.+.|..+.+.+.- +..+|.-+. .++...++. ++|..+|.+..
T Consensus 324 A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88888888876433 444554443 334456666 77777777654
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.76 E-value=0.16 Score=38.79 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
.+|...+....+..-++.|..+|-+..+.+ ..+++..++.++..++ .|+..-|.++|+--...-+. ++..-...+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 356667777777777899999999999888 6778888888888775 57888999999876665333 33444556777
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 107 YFKSQNMKSAFDVYEEMCENNISPN--IVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
+...++-..|..+|+..... +..+ ...|..++..-..-|++..+..+-+++...
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 78889999999999976643 2333 678999999999999999998888887764
No 246
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.076 Score=35.01 Aligned_cols=135 Identities=11% Similarity=0.053 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHH-HHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS-ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV-TYSCL 103 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 103 (223)
+...|..-+. +.+.+..++|+.-|..+...|...-+ -..-.......+.|+...|...|+++-...+.|-.. -..-|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4556666665 56778889999999999876633211 122234455677899999999999987765555433 11111
Q ss_pred --HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 104 --IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 104 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
...+...|.++.....++.+...+-+.-...-..|.-+-.+.|++.+|.++|..+.+.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2345678889998888888876654555566778888888999999999999988764
No 247
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.74 E-value=0.14 Score=37.78 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYC 178 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
+.+.-+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-.++... . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44445666677888888887766652 47888888889999999999887776432 1 23466788888888
Q ss_pred hcCCcchHHHHHHH
Q 027412 179 KAGRPTEAMQLYDS 192 (223)
Q Consensus 179 ~~g~~~~a~~~~~~ 192 (223)
..|...+|..+..+
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 88998888888877
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.73 E-value=0.05 Score=38.96 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 027412 98 VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD-----NHLLPDVVTYAI 172 (223)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 172 (223)
.++..++..+...|+.+.+...++.+.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356667888888999999999999999886 78899999999999999999999999998764 588888888777
Q ss_pred HHHH
Q 027412 173 LIRG 176 (223)
Q Consensus 173 l~~~ 176 (223)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 7666
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.71 E-value=0.1 Score=35.78 Aligned_cols=189 Identities=22% Similarity=0.168 Sum_probs=136.5
Q ss_pred CHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 7 HLDAALKLFGQLTDRGLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.+..+...+......... .....+......+...+++..+...+...... ........+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445555566555554322 13567778888888899999999988888652 2244566777788888888899999999
Q ss_pred HHHHHhcCCCccHHHHHHHHH-HHHhhCChhHHHHHHHHHHHCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 85 FSKMLEKGPKANVVTYSCLID-GYFKSQNMKSAFDVYEEMCENNI--SPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
+.........+ ......... .+...|+++.+...+++...... ......+......+...++.+.+...+......
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 99988765543 233333334 78899999999999999866321 123444555555577889999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 162 HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
........+..+...+...++++.+...+......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 54214677888888999999999999999998874
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.13 Score=36.88 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=70.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH
Q 027412 70 DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLME 149 (223)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 149 (223)
......|++.+|...|+......++ +...-..++.+|...|+.+.|..++..+-...-.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777777776655 455556677777777777777777776643321111112222233344433333
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 150 EALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 150 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
+...+-.+.-. ++ -|...-..+...+...|+.+.|.+.+-.+++.
T Consensus 221 ~~~~l~~~~aa-dP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAA-DP-DDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHh-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333322 22 25556666777777777777777766666554
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.69 E-value=0.2 Score=38.78 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 027412 66 TILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-IVSYSILI 139 (223)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 139 (223)
..+..++.+.|+.++|++.+++|.+..+.. +......|+.++...+.+.++..++.+-.+...+.+ ...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 457777788899999999999998765432 445677799999999999999999988765433332 23455444
No 252
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.53 E-value=0.0037 Score=29.07 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=7.8
Q ss_pred cHHHHHHHHHHHHhhCChhH
Q 027412 96 NVVTYSCLIDGYFKSQNMKS 115 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~ 115 (223)
+..+|+.+...|...|++++
T Consensus 12 n~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHh
Confidence 33333333333333333333
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.48 E-value=0.11 Score=34.75 Aligned_cols=98 Identities=16% Similarity=-0.001 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHH
Q 027412 98 VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--IVSYSILIDGLCKRGLMEEALYAFHCALDN---HLLPDVVTYAI 172 (223)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 172 (223)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+.... +..++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5788899999999999999999999987654443 346677888999999999999998877643 22122211111
Q ss_pred H--HHHHHhcCCcchHHHHHHHHHH
Q 027412 173 L--IRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 173 l--~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
. .-.+...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1 1224567899999998876653
No 254
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.48 E-value=0.24 Score=37.21 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=46.4
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHH--HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDII--TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
.|+++.|.+-|+-|... |... -...|.-.--+.|..+.|..+-+.....-.. -...+...+...+..|+|+.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 46677777777777642 1111 1222222233456666666666666544322 3455666777777777777777
Q ss_pred HHHHHHHh
Q 027412 83 MMFSKMLE 90 (223)
Q Consensus 83 ~~~~~~~~ 90 (223)
++++.-+.
T Consensus 209 kLvd~~~~ 216 (531)
T COG3898 209 KLVDAQRA 216 (531)
T ss_pred HHHHHHHH
Confidence 77765543
No 255
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.46 E-value=0.16 Score=34.95 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 027412 167 VVTYAILIRGYCKAGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 167 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 197 (223)
++||--+.+.+...|+.++|..+|+-.+..+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999887653
No 256
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.43 E-value=0.025 Score=42.39 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHh----CCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-ccH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTC----VQLK-PNSITFTILIDAFCKEGRMDDATMMFSKMLEK----GPK-ANV 97 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 97 (223)
..|..|...|.-.|+++.|+...+.-.+ .|-. .....+..|.+++.-.|+++.|.+.|+..... |-. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566777777778899999888765432 2211 13357888999999999999999998876432 221 133
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHC-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 98 VTYSCLIDGYFKSQNMKSAFDVYEEMCEN-----NISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
....+|...|.-..++++|+.++.+-... +..-....+-.|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566888888889999999988765432 1223466888899999999999999888776553
No 257
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.40 E-value=0.0053 Score=28.54 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=17.9
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 027412 121 EEMCENNISPNIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
++.++.. |.+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 555666666666666666666654
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.39 E-value=0.24 Score=36.19 Aligned_cols=132 Identities=12% Similarity=0.175 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHhhCCh
Q 027412 43 LDEAVQLFEKLTCVQLKPNSITFTILIDAFCK--EG----RMDDATMMFSKMLEKGPK---ANVVTYSCLIDGYFKSQNM 113 (223)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 113 (223)
+++...+++.+.+.|+.-+..+|-........ .. ...++..+++.|++..+- ++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888999999888777666543333322 22 256788999999987653 233444444333 33443
Q ss_pred ----hHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 027412 114 ----KSAFDVYEEMCENNISPNI--VSYSILIDGLCKRGL--MEEALYAFHCALDNHLLPDVVTYAILIRG 176 (223)
Q Consensus 114 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (223)
+.+..+|+.+.+.|+..+- .....++.......+ ..++.++++.+.+.++++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 4567788888887765432 333333333332222 44788889999999988777776655443
No 259
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.39 E-value=0.24 Score=36.19 Aligned_cols=137 Identities=12% Similarity=0.199 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh--cC----chhHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHhcCC
Q 027412 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCS--LN----RLDEAVQLFEKLTCVQL---KPNSITFTILIDAFCKEGR 77 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 77 (223)
.+++.+.+++.+.+.|...+..+|-+....... .. ...++..+|+.|++..+ .++-.++..++.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 356778888999999888777665553333333 22 35579999999988752 2233445444433 3333
Q ss_pred ----hhHHHHHHHHHHhcCCCccH--HHHHHHHHHHHhhCC--hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 027412 78 ----MDDATMMFSKMLEKGPKANV--VTYSCLIDGYFKSQN--MKSAFDVYEEMCENNISPNIVSYSILIDGLCKR 145 (223)
Q Consensus 78 ----~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (223)
.+.++.+|+.+...|...+- .....++.......+ ...+..+++.+.+.|+++....|..++-...-.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~ 230 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLE 230 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcC
Confidence 35677788888887765432 233333333322222 347888999999999888877766655444333
No 260
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.37 E-value=0.31 Score=37.32 Aligned_cols=141 Identities=12% Similarity=0.103 Sum_probs=86.5
Q ss_pred HHhcCchhHHHHHHHHHHhCCCC-C---c-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC
Q 027412 37 YCSLNRLDEAVQLFEKLTCVQLK-P---N-SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~-~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (223)
+-+.+++.++..+|.++.+..-. | . ...-+.++++|.. ++.+.....+....+..+. ....-.-..-.+.+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK-SAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhh
Confidence 44678899999999888654311 1 1 2233566777754 5677777777777665432 2222222233456778
Q ss_pred ChhHHHHHHHHHHHC--CCCC------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHH
Q 027412 112 NMKSAFDVYEEMCEN--NISP------------NIVSYSILIDGLCKRGLMEEALYAFHCALDNHL----LPDVVTYAIL 173 (223)
Q Consensus 112 ~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l 173 (223)
++.+|.+.+..-.+. +..+ |-..=+..+.++...|++.++..+++++...-. ..+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888887665543 2121 111124556777788999999888888775433 3677888877
Q ss_pred HHHHHh
Q 027412 174 IRGYCK 179 (223)
Q Consensus 174 ~~~~~~ 179 (223)
+-.+.+
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 666655
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.13 Score=42.05 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=97.1
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPD--IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
++...++-|+.+-+. .+..++ ........+-+.+.|++++|...|-+-... ++|+. ++.-|.......+
T Consensus 345 ~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQRIKN 415 (933)
T ss_pred HHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHHHHHH
Confidence 344555556555443 222222 223444455566788999998888776532 23222 4455556666777
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
-..+++.+.+.|.. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++|..+-.+...
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 77788888888876 56666778889999988888777766544 2211 11234455556666666666655443322
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 027412 161 NHLLPDVVTYAILIRGYCKAGRPTEAMQLYDS 192 (223)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 192 (223)
+......+ +-..+++++|++++..
T Consensus 492 -----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 492 -----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred -----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 23333332 2345666666666544
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.23 E-value=0.16 Score=32.48 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 027412 66 TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR 145 (223)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (223)
..++..+.+.+.+.....+++.+...+. .+...++.++..|++.+ .++....++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3466777777889999999999888875 47888899999998764 4455555542 12344556678888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhh
Q 027412 146 GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA-GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 214 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 214 (223)
+.++++..++.++.. +...+..+... ++++.|.+++.+- -++..|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 888888888876532 22233333444 7888888877762 256678877777654
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.21 E-value=0.32 Score=36.22 Aligned_cols=131 Identities=13% Similarity=0.059 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--CCC-CC-----
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLEKG-----PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--NIS-PN----- 131 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~~----- 131 (223)
...+..++...+.++++++.|+...+.. +-....++..|...|.+..|+++|.-+..++.+. .+. .|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3456777777888999999998876532 2223457888999999999999988887766542 111 11
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 132 -IVSYSILIDGLCKRGLMEEALYAFHCALD----NHLLP-DVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 132 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
......+.-++...|.+..|.+..++..+ .|-++ .......+.+.|...|+.+.|+.-|+....
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 11334455667788888888887776653 33221 234456778889999999988887776553
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.18 E-value=0.019 Score=27.03 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 027412 135 YSILIDGLCKRGLMEEALYAFHC 157 (223)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~ 157 (223)
+..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555554
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.16 E-value=0.34 Score=36.06 Aligned_cols=130 Identities=16% Similarity=0.100 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCccH--
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQ-----LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK----GPKANV-- 97 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-- 97 (223)
....+..++...+.++++++.|+...... ......++..|...|.+..|+++|.-+..+.... ++. |.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~ 202 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSL 202 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhH
Confidence 44556777888888999999999876532 1123457889999999999999998777665442 222 21
Q ss_pred ----HHHHHHHHHHHhhCChhHHHHHHHHHHH----CCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 98 ----VTYSCLIDGYFKSQNMKSAFDVYEEMCE----NNISP-NIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 98 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
.....+..++...|....|.+.-++..+ .|-.+ .......+.+.|...|+.+.|+.-|+...
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1223355667778888888877776653 33222 23455677888999999999998888765
No 266
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.074 Score=38.51 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=68.9
Q ss_pred CCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC---CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc
Q 027412 22 GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKP--NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96 (223)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 96 (223)
|.+.+..+...++..-....+++.++..+-+++..- ..| +..++- +.+.+ -++++++.++..-++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i---rlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI---RLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH---HHHHc-cChHHHHHHHhCcchhccccc
Confidence 444445555566665555677888888877775431 111 223333 33322 367788888888888888889
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 97 VVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
..+++.++..+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988887777654
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.08 E-value=0.019 Score=27.01 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
+|..|..+|.+.|++++|+.++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888754
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.07 E-value=0.49 Score=36.76 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL-LPDVVTYAILIRG 176 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 176 (223)
+-..+..++-+.|+.++|.+.++++.+.. ......+...|+.++...+.+.++..++.+..+... +.-...|+..+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33557778889999999999999998653 112345788999999999999999999998765433 1223455555544
Q ss_pred HHhcCC
Q 027412 177 YCKAGR 182 (223)
Q Consensus 177 ~~~~g~ 182 (223)
+...++
T Consensus 341 aRav~d 346 (539)
T PF04184_consen 341 ARAVGD 346 (539)
T ss_pred HHhhcc
Confidence 444443
No 269
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.95 E-value=0.68 Score=37.34 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 027412 137 ILIDGLCKRGLMEEALYAFHCALDNHLLPD-----------VVTYAILIRGYCKAGRPTEAMQLYDSMLRNGI 198 (223)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 198 (223)
.+++.....++|++|..+-++..+.- |+ ..-|...-++|.+.|+-.+|.++++++....+
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~--~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFK--DDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcccc--ccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 45566667788888888776654421 22 22355566778888999999999988876543
No 270
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.94 E-value=0.54 Score=36.11 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=87.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCC-cC----HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHH--HHHhc
Q 027412 3 IKECHLDAALKLFGQLTDRGLE-PD----IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID--AFCKE 75 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 75 (223)
.+.+++.+|.++|.++.+..-. |. ...-+.++++|.. ++.+.....+....+.. |. ..|-.+.. .+.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~~-s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--GK-SAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--CC-chHHHHHHHHHHHHh
Confidence 4678999999999998765222 11 2233566677664 45666666666665442 21 22333333 33467
Q ss_pred CChhHHHHHHHHHHhc--CCCc------------cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC----CCChhHHHH
Q 027412 76 GRMDDATMMFSKMLEK--GPKA------------NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI----SPNIVSYSI 137 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 137 (223)
+.+.+|.+.+...... +..| +...=+..+.++...|.+.++..+++++...=+ ..+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899999888766554 2221 222335567888899999999999998875433 378888888
Q ss_pred HHHHHHh
Q 027412 138 LIDGLCK 144 (223)
Q Consensus 138 l~~~~~~ 144 (223)
++-.+.+
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 6555543
No 271
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.92 E-value=0.039 Score=25.34 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLE 90 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 90 (223)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33344444444444444444444433
No 272
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.90 E-value=0.17 Score=30.07 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 151 ALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 151 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
..+-+..+...+..|++....+.+++|.+.+++..|.++++-..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555554444
No 273
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.90 E-value=0.23 Score=33.70 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=65.8
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 027412 35 CGYCSLNRLDEAVQLFEKLTCVQLKPN----SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (223)
.-+...|++++|..-|...++.-+... ...|..-..++.+.+.++.|+.-..+.++.++. ......--..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 446677888888888888876642222 234555566777888888888888888877665 444555556788888
Q ss_pred CChhHHHHHHHHHHHCC
Q 027412 111 QNMKSAFDVYEEMCENN 127 (223)
Q Consensus 111 ~~~~~a~~~~~~~~~~~ 127 (223)
..+++|+.-|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888888764
No 274
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.81 E-value=0.26 Score=38.20 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=77.3
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChh
Q 027412 35 CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (223)
....+.|+++.|.++.++. .+...|..|.....+.|+++-|++.|.+.. -|..|+-.|...|+.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HH
T ss_pred HHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHH
Confidence 4456789999998775543 378899999999999999999999998752 3566777888899998
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 027412 115 SAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHC 157 (223)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (223)
...++.+.....| -++....++...|+.++..+++.+
T Consensus 391 ~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877765 356666667778999988888764
No 275
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.75 E-value=0.11 Score=30.55 Aligned_cols=45 Identities=4% Similarity=-0.032 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 115 SAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
++.+-++.+...++-|++.+..+.+++|.+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555444
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.72 E-value=0.03 Score=25.74 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444445555555555555544443
No 277
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.63 E-value=0.67 Score=34.96 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=34.4
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 55 (223)
+.|..+.|+.+-++.-... +.-...+...+...+..|+|+.|+++++.-.+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4566677777776665542 22355677777888888888888888876554
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.38 Score=31.89 Aligned_cols=142 Identities=14% Similarity=0.120 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHH-HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChh-HHH--
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT-YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIV-SYS-- 136 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-- 136 (223)
+...|..-++. .+.+..++|+.-|..+.+.|...-+.. ---........|+...|...|.++-...-.|-.. -..
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 44556555544 467889999999999998876522221 1223455678899999999999987654333222 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 137 ILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
--...+...|.+++.....+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+......|...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 1223456789999999888877654432333445677778889999999999999998875556544
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.59 E-value=0.012 Score=37.82 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLM 148 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 148 (223)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++.. +..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4444455566666666666665544445666666666666666656666655511 112223445555555666
Q ss_pred HHHHHHHHH
Q 027412 149 EEALYAFHC 157 (223)
Q Consensus 149 ~~a~~~~~~ 157 (223)
+.+.-++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555544
No 280
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.59 E-value=0.063 Score=24.50 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=9.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 027412 67 ILIDAFCKEGRMDDATMMFSKMLE 90 (223)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~ 90 (223)
.+..++...|++++|++.|++..+
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 281
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.55 Score=34.31 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=85.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHH----------hCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCccHH
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLT----------CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG---PKANVV 98 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 98 (223)
.|.+.|.....|+.-....-++. ..|...+..+...++..-....+++.++.++-+++..- ..|+..
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~ 103 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT 103 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc
Confidence 35556666666654433332222 22334445555556666666788899998887776531 111211
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
. ...++.+. .-++++++..+..-++-|+.||..+++.++..+.+.+++.+|..+.-.|....
T Consensus 104 ~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 I-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred H-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1 22333333 34778999999998999999999999999999999999999998887776543
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.56 E-value=0.37 Score=31.46 Aligned_cols=51 Identities=16% Similarity=0.026 Sum_probs=22.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
+.++.+++..++..+.-..|. ....-..-...+...|+|.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555554443332 122222223334445555555555555443
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.53 E-value=1 Score=36.29 Aligned_cols=177 Identities=17% Similarity=0.128 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHH-----HHhcCchhHHHHHHHHHHh-------CCCCCcHHHHHHHHHHHHh
Q 027412 7 HLDAALKLFGQLTDRGLEPDIITYNTIICG-----YCSLNRLDEAVQLFEKLTC-------VQLKPNSITFTILIDAFCK 74 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 74 (223)
....|.+.++...+.|. ......+..+ +....+.+.|+.+++.+.+ .+ .+.....+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 35678888888887752 2333333322 3355689999999998876 44 33356667778876
Q ss_pred cC-----ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh---hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH---
Q 027412 75 EG-----RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK---SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC--- 143 (223)
Q Consensus 75 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 143 (223)
.. +.+.|..++.+....|.+ +.... +...+.. ..+...|.++|..+-..|. ...+..+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGL 374 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCC
Confidence 43 567799999888877654 44333 3333333 2467899999999988872 333333333333
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 027412 144 -KRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 144 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 197 (223)
-..+...|..++.+..+.|. |...--...+..+.. ++++.+.-.+..+...|
T Consensus 375 gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 23578899999999888873 332222222233333 67777666666665554
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.53 E-value=0.38 Score=31.40 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=62.6
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIV-SYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAG 181 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 181 (223)
++..-...++.+.+..++..+.-. .|... .-..-...+...|+|.+|..+|+.+.... |....-..|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 444556778999999999999874 44433 33344566889999999999999987654 33333444544444444
Q ss_pred CcchHHHHHHHHHHCCCCCch
Q 027412 182 RPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~p~~ 202 (223)
+-..-...-.++.+.+-.|+.
T Consensus 92 ~D~~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPDA 112 (160)
T ss_pred CChHHHHHHHHHHhcCCChHH
Confidence 444455566667776544443
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.46 E-value=0.35 Score=30.50 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 027412 132 IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIM 199 (223)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 199 (223)
...+...+.....+|.-|+-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++.+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 445555666677777777777777776642 2366777777777788888888888888777777753
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.46 E-value=0.042 Score=25.12 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 170 YAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 170 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+..+..++...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444555555555555554444
No 287
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.34 E-value=0.43 Score=32.44 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=61.5
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhhCCh
Q 027412 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK---GPKANVVTYSCLIDGYFKSQNM 113 (223)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 113 (223)
..+.| -+.|...|-.+...+.--++.....|...|. ..+.+++..++-+..+. +..+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFG-DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34444 4678888888877765557777777777776 56899999999888765 3367899999999999999999
Q ss_pred hHHH
Q 027412 114 KSAF 117 (223)
Q Consensus 114 ~~a~ 117 (223)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9875
No 288
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.33 E-value=0.15 Score=37.49 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 027412 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRP 183 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 183 (223)
..-|.+.|.+++|+.+|....... +.+..++..-..+|.+...+..|..-....+..+- .-...|+--..+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 344667777777777777766542 34777777777777777777766665555544321 1233455445555555666
Q ss_pred chHHHHHHHHHHCCCCCchh
Q 027412 184 TEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 184 ~~a~~~~~~~~~~~~~p~~~ 203 (223)
.+|.+-++..++ +.|+..
T Consensus 182 ~EAKkD~E~vL~--LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPKNI 199 (536)
T ss_pred HHHHHhHHHHHh--hCcccH
Confidence 666666666555 455543
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.31 E-value=0.42 Score=32.50 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=59.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC---CCCCChhHHHHHHHHHHhcCCH
Q 027412 72 FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN---NISPNIVSYSILIDGLCKRGLM 148 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 148 (223)
+.+.|+ +.|.+.|-.+...+.--++.....|...| ...+.+++..++-...+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 56888888887765543555555555544 478999999999888754 3367899999999999999999
Q ss_pred HHHHH
Q 027412 149 EEALY 153 (223)
Q Consensus 149 ~~a~~ 153 (223)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 98863
No 290
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.30 E-value=0.81 Score=35.58 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=69.4
Q ss_pred ccCHHHHHHH-HHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 5 ECHLDAALKL-FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 5 ~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
.|++..|-+- +.-+... +.++.........+...|+++.+...+...... +.....+...+++...+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3555544333 3333332 223333344445566677777777776655322 12244556667777777778888777
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 127 (223)
+-.-|....++ ++..........-..|-++++...|++....+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777766555 55555544555555666777777777776654
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.22 E-value=0.8 Score=33.23 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=103.0
Q ss_pred HHhcCchhHHHHHHHHHHhCC--CCCcHH-----HHHHHHHHHHhcC-ChhHHHHHHHHHHhc--------CCCcc----
Q 027412 37 YCSLNRLDEAVQLFEKLTCVQ--LKPNSI-----TFTILIDAFCKEG-RMDDATMMFSKMLEK--------GPKAN---- 96 (223)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~-----~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 96 (223)
..+.|+.+.|..++.+..... ..|+.. .+..++......+ +++.|...+++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999886543 233321 2333444445566 888888877765443 11122
Q ss_pred -HHHHHHHHHHHHhhCChhH---HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 027412 97 -VVTYSCLIDGYFKSQNMKS---AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAI 172 (223)
Q Consensus 97 -~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 172 (223)
..++..++.+|...+..+. |..+++.+... .+..+.++..-+..+.+.++.+.+.+.+.+|...-. .....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHH
Confidence 2467778888888777654 55566666443 233456666777778888999999999999987632 13344444
Q ss_pred HHHHH---HhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 173 LIRGY---CKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 173 l~~~~---~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
++..+ .. .....+...+..+....+.|...
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChh
Confidence 44444 33 33456777777776665666654
No 292
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.17 E-value=0.44 Score=30.04 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
+.......+......|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++-+++.++-+.|.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44556667777888888888888888877544 67788888888888888888888888888888776
No 293
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.07 E-value=0.87 Score=32.87 Aligned_cols=146 Identities=11% Similarity=0.102 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHh-cCCCccHHHHHHHHH
Q 027412 30 YNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNSITFTILIDAFCK-EG-RMDDATMMFSKMLE-KGPKANVVTYSCLID 105 (223)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 105 (223)
|..|+. ....+.+|+.+|+..-. ..+--|..+...+++.... .+ ....-.++.+-+.. .+..++..+....+.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 34456788888884332 2344577777778887766 22 22222333333333 235567788888999
Q ss_pred HHHhhCChhHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHHHHHHH
Q 027412 106 GYFKSQNMKSAFDVYEEMCEN-NISPNIVSYSILIDGLCKRGLMEEALYAFHCA-----LDNHLLPDVVTYAILIRGYC 178 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~~ 178 (223)
.++..++|.+-.++++..... +...|...|..++......|+..-..++..+- .+.++..+...-..+-+.+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 999999999999999988755 55678899999999999999998888877642 24456566665555544443
No 294
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.99 E-value=0.79 Score=35.64 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=46.2
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
........|+++.+.+.+...... +.....+...+++...+.|+++.|...-.-|+...+ .+++......-.....|-
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~ 406 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI-EDEEVLTVAAGSADALQL 406 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc-CChhheeeecccHHHHhH
Confidence 334445556666666555544332 223344555566666666666666666555554444 233333333333344455
Q ss_pred cchHHHHHHHHHH
Q 027412 183 PTEAMQLYDSMLR 195 (223)
Q Consensus 183 ~~~a~~~~~~~~~ 195 (223)
++++.-.|+++..
T Consensus 407 ~d~~~~~wk~~~~ 419 (831)
T PRK15180 407 FDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555543
No 295
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.91 E-value=1.7 Score=35.49 Aligned_cols=186 Identities=16% Similarity=0.181 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhh-CCCCcC--HHHHHHHHHHHH-hcCchhHHHHHHHHHHhCCCCCcH-----HHHHHHHHHHHhcCCh
Q 027412 8 LDAALKLFGQLTD-RGLEPD--IITYNTIICGYC-SLNRLDEAVQLFEKLTCVQLKPNS-----ITFTILIDAFCKEGRM 78 (223)
Q Consensus 8 ~~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~ 78 (223)
+..|+..++.+.+ ..++|. ..++-.+...+. ...+++.|...+++.....-.++. .....++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 3456777777773 333333 335566677666 567899999999987544322322 2234566777776665
Q ss_pred hHHHHHHHHHHhcC----CCccHHHHHHH-HHHHHhhCChhHHHHHHHHHHHCC---CCCChhHHHHHHHHHH--hcCCH
Q 027412 79 DDATMMFSKMLEKG----PKANVVTYSCL-IDGYFKSQNMKSAFDVYEEMCENN---ISPNIVSYSILIDGLC--KRGLM 148 (223)
Q Consensus 79 ~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~ 148 (223)
. |...+++.++.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 888888776542 22233344433 333334479999999998877432 2344445555555544 45656
Q ss_pred HHHHHHHHHHHhCC---------CCCCHHHHHHHHHHH--HhcCCcchHHHHHHHHH
Q 027412 149 EEALYAFHCALDNH---------LLPDVVTYAILIRGY--CKAGRPTEAMQLYDSML 194 (223)
Q Consensus 149 ~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 194 (223)
+++.+.++++.... -.|...+|..+++.+ ...|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777663211 124556777776664 46677667777666654
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=1.8 Score=35.95 Aligned_cols=147 Identities=17% Similarity=0.118 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF----TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
...-+....+...++-|+.+.+.- + .+..+. .....-+.+.|++++|...|-+.+.. .+| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 344455666666677777665543 2 233333 33444556789999999888666543 232 23566
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE 185 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 185 (223)
-|........-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+...+.-+..|. ...+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~---e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDV---ETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeH---HHHHHHHHHhChHHH
Confidence 67777788888899999999984 55667788999999999999998888765421122233 334555555555555
Q ss_pred HHHHHH
Q 027412 186 AMQLYD 191 (223)
Q Consensus 186 a~~~~~ 191 (223)
|..+..
T Consensus 482 a~~LA~ 487 (933)
T KOG2114|consen 482 AELLAT 487 (933)
T ss_pred HHHHHH
Confidence 554443
No 297
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.76 Score=37.51 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=65.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL 147 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 147 (223)
-+.-+...|+..+|.++-.+.+ -|+-..|-.-+.+++..++|++-+++-+... .+.-|..++.+|.+.|+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 3344455677777777766653 3466677767777777777776555544332 14456667777777888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 027412 148 MEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYD 191 (223)
Q Consensus 148 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 191 (223)
.++|.+++-+... .. ..+.+|.+.|++.+|.++.-
T Consensus 760 ~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 8888777754421 11 45566677777776666543
No 298
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.75 E-value=0.77 Score=30.65 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 113 MKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
+++|...|+++... .|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34444555554442 45556665555444
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=0.84 Score=30.90 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHH--HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHH----
Q 027412 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC--LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSY---- 135 (223)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---- 135 (223)
...|..++.... .+.+ +......++...+......++.. +...+...+++++|...++..... |....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 345665666553 3333 55666666766543423333333 456778899999999999987753 222223
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 027412 136 -SILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 136 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 197 (223)
..|.+.....|.+|+|+..++.....++ .......-.+.+...|+-++|+.-|++.++.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3355677788999999999987665443 33334556777899999999999999999875
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.67 E-value=0.13 Score=24.67 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555443
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.60 E-value=2 Score=34.69 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=97.4
Q ss_pred cccccCHHHHHHHHHHHhh-------CCCCcCHHHHHHHHHHHHhcC-----chhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTD-------RGLEPDIITYNTIICGYCSLN-----RLDEAVQLFEKLTCVQLKPNSITFTILI 69 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 69 (223)
+....+++.|+.+|+.+.. .+ .+.....+..+|.+.. +...|..++.+..+.|. |+.... +.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg 332 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYL--LG 332 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHH--HH
Confidence 3456789999999998876 44 3335667777777743 66789999999988773 344333 44
Q ss_pred HHHHhc---CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH----hhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 70 DAFCKE---GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF----KSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 70 ~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
.++..- .+...|.++|......|.. . .+-.+..+|. -..+.+.|..++++.-+.| .|........+..+
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHH
Confidence 444332 4678999999999888764 2 2222333332 3357889999999999887 44323223333334
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 027412 143 CKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~ 163 (223)
.. +.++.+.-.+..+...+.
T Consensus 409 g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 409 GV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cc-ccccHHHHHHHHHHHhhh
Confidence 44 677777666666655543
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.49 E-value=0.15 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKM 88 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (223)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 303
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=94.40 E-value=1.3 Score=31.83 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=76.6
Q ss_pred cCHHHHHHHHHHHhhC-----CC-CcC-------HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 027412 6 CHLDAALKLFGQLTDR-----GL-EPD-------IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~-----~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (223)
.+|..|++..++-.+. .. .+. ......=|++++..++|.++..+.-+..+.--+..+.+...-|-.|
T Consensus 49 rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLy 128 (309)
T PF07163_consen 49 RDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLY 128 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHH
Confidence 4567777777665432 01 111 1223345789999999999998887775543334455666677788
Q ss_pred HhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH-----hhCChhHHHHHH
Q 027412 73 CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-----KSQNMKSAFDVY 120 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 120 (223)
.+.+.+..+.++-..-.+..-.-+...|..++..|. -.|.+++|+++.
T Consensus 129 sKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 129 SKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999988877766432234455776666654 468899888877
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.39 E-value=0.57 Score=27.65 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 027412 45 EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (223)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (223)
++.+-++.+......|++......+++|.+.+++..|+++|+-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433
No 305
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=1.3 Score=31.28 Aligned_cols=187 Identities=13% Similarity=0.066 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcH------HHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCccH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS------ITFTILIDAFCKEGRMDDATMMFSKMLEK---GPKANV 97 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 97 (223)
...|.....+|...+++++|..-+.+..+-. +.+. ..|...+...-....+.++..++++.... .-.|++
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 4567777888999999999988887775221 2122 23444444445556677777777765432 223343
Q ss_pred HHHHHHHHH--HHhhCChhHHHHHHHHHHHC---C--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 027412 98 VTYSCLIDG--YFKSQNMKSAFDVYEEMCEN---N--ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN----HLLPD 166 (223)
Q Consensus 98 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 166 (223)
.... |-++ .....++++|+++|++.... + .+--...+....+.+.+...+++|-..+.+-... .-.++
T Consensus 110 AAma-leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 110 AAMA-LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 3321 2222 24556788888888876532 1 0111234566667788888888877666543211 11122
Q ss_pred H-HHHHHHHHHHHhcCCcchHHHHHHHHHHCC---CCCchhhHHHHhhhHhhc
Q 027412 167 V-VTYAILIRGYCKAGRPTEAMQLYDSMLRNG---IMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 167 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~ 215 (223)
. ..|...|-.+....++..|...++.--+-+ -.-+..+...|+.+|-..
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~g 241 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEG 241 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccC
Confidence 2 345566666777789999999998855432 223456778888887443
No 306
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.28 E-value=0.1 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 027412 138 LIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555554443
No 307
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.25 E-value=0.32 Score=35.91 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=59.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLM 148 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 148 (223)
.+-|.+.|.+++|+..|.......+. |++++..-..+|.+...+..|..--..+...+ ..-...|.--+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 34567788888888888877765543 77788888888888888877776666655433 22233444444444455666
Q ss_pred HHHHHHHHHHHhCC
Q 027412 149 EEALYAFHCALDNH 162 (223)
Q Consensus 149 ~~a~~~~~~~~~~~ 162 (223)
.+|.+-++..++..
T Consensus 182 ~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 182 MEAKKDCETVLALE 195 (536)
T ss_pred HHHHHhHHHHHhhC
Confidence 66666666655543
No 308
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.09 E-value=1.2 Score=30.37 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=72.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 027412 70 DAFCKEGRMDDATMMFSKMLEKGPKAN----VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR 145 (223)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (223)
+-+...|++++|..-|...+..-+... ...|..-..++.+.+.++.|+.--.+.++.+ +.....+.--..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 445678999999999999888754322 3456667778899999999999988888865 33444555556789999
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 027412 146 GLMEEALYAFHCALDNHL 163 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~ 163 (223)
..++.|++-|+++.+..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 999999999999988764
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.07 E-value=1.6 Score=31.63 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH-----CCCCCchhhH
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR-----NGIMPDGLLL 205 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~ 205 (223)
+++.....|..+|.+.+|.++.++....++ .+...+..++..+...|+--.+.+-++++.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 455666778888888888888888887765 5777788888888888887777766666543 2666665544
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.05 E-value=0.99 Score=29.11 Aligned_cols=54 Identities=13% Similarity=-0.029 Sum_probs=34.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 027412 73 CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 127 (223)
...++++++..+++.|.-..|+ ....-..-...+...|+|++|.++|+.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3467778888888777765444 22222233455667788888888888777653
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.94 E-value=0.17 Score=22.75 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=9.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 027412 69 IDAFCKEGRMDDATMMFSKMLE 90 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~ 90 (223)
..++.+.|++++|.+.|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.89 E-value=2.6 Score=33.27 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
|....-+++..+.....+.-+..+..+|...| .+...+..++.+|... ..++-..+++++.+.... ++..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44456677777777778888888888887765 3666777888888887 556777888888777665 5554455555
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISP-----NIVSYSILIDGLCKRGLMEEALYAFHCALD-NHLLPDVVTYAILIRGYCK 179 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 179 (223)
.|-+ ++.+.+..+|.++...-++. -...|.-+... -..+.+..+.+..+... .|...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5544 77777777777776542220 11233333321 13455555555555543 2333334445555566777
Q ss_pred cCCcchHHHHHHHHHHC
Q 027412 180 AGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 180 ~g~~~~a~~~~~~~~~~ 196 (223)
..++++|++++..+++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 77777777777766554
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.62 E-value=1.4 Score=29.45 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 027412 115 SAFDVYEEMCENNISPNIVSYSILIDGLCKRG-----------LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRP 183 (223)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 183 (223)
+|..-|++.+..+ |....++..+..+|...+ .+++|...|++..+. .|+..+|+.-+....
T Consensus 53 dAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~----- 124 (186)
T PF06552_consen 53 DAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA----- 124 (186)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-----
Confidence 3344444444432 222355555655555332 355666666666654 478888887777653
Q ss_pred chHHHHHHHHHHCCC
Q 027412 184 TEAMQLYDSMLRNGI 198 (223)
Q Consensus 184 ~~a~~~~~~~~~~~~ 198 (223)
+|-++..++.+.+.
T Consensus 125 -kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 -KAPELHMEIHKQGL 138 (186)
T ss_dssp -THHHHHHHHHHSSS
T ss_pred -hhHHHHHHHHHHHh
Confidence 47777777776643
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.58 E-value=0.31 Score=22.10 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555544
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.49 E-value=0.34 Score=21.96 Aligned_cols=27 Identities=37% Similarity=0.258 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555556666666666666655543
No 316
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.46 E-value=1.5 Score=29.09 Aligned_cols=133 Identities=12% Similarity=0.149 Sum_probs=56.4
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC
Q 027412 49 LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (223)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 128 (223)
++..+.+.+++|+...+..+++.+.+.|++..... +.+.++-+|.......+-.+. +.+..+.++=-.|..+ +
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-L 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-L 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-h
Confidence 33444445556666666666666666665443332 222233333333332222221 1222222222222211 0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 129 SPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
...+..++..+...|++-+|.++.+......- ++ ...++.+....+|...-..+++-..+
T Consensus 89 ---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~-~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 ---GTAYEEIIEVLLSKGQVLEALRYARQYHKVDS-VP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCccc-CC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11334455556666666666666654322111 11 12344444555555544444444443
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=2.4 Score=34.08 Aligned_cols=101 Identities=21% Similarity=0.152 Sum_probs=75.1
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHH
Q 027412 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116 (223)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (223)
..+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+.. -|..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHH
Confidence 456789999988876653 66779999999999999999999987653 345677777888887776
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 117 FDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
..+-....+.| ..|.. ..+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 66666666666 44332 23466789999998887644
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.36 E-value=1.9 Score=30.00 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 027412 8 LDAALKLFGQLTDRGLEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86 (223)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (223)
+.-|+-=|.+.... .|+ +.+||.+.-.+...|+++.|.+.|+...+.++.-+-...|.-+..| -.|+++.|.+-+-
T Consensus 81 ~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHH
Confidence 33344444444443 444 6788988888899999999999999998875443333333222222 2355555555444
Q ss_pred HHHhcCCC-ccHHHH--------------HHHHHHHHhhCChh-------------HHHHHHHHHHHCCCCC-------C
Q 027412 87 KMLEKGPK-ANVVTY--------------SCLIDGYFKSQNMK-------------SAFDVYEEMCENNISP-------N 131 (223)
Q Consensus 87 ~~~~~~~~-~~~~~~--------------~~l~~~~~~~~~~~-------------~a~~~~~~~~~~~~~~-------~ 131 (223)
+.-+.++. |-...| ..+..-+....+-. ....+++.+.... .. -
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a-~~n~~~Ae~L 236 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADA-TDNTSLAEHL 236 (297)
T ss_pred HHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhc-cchHHHHHHH
Confidence 44333222 111111 11222111111100 0112223322211 11 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 132 IVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
..||--+..-+...|+.++|..+|+-....++
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35677788889999999999999998876543
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.34 E-value=1.6 Score=30.29 Aligned_cols=76 Identities=12% Similarity=0.087 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC--CCCChhHHHHHHHH
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN--ISPNIVSYSILIDG 141 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 141 (223)
.+..+..+.+.+...+++...++-.+..|. +...-..++..++-.|+|++|..-++-.-... ..+-..+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344566677788999999998888777665 66777778899999999999998887766532 12234455555544
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=2 Score=30.21 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=69.6
Q ss_pred HHHHhcCchhHHHHHHHHHHh----CCCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----ccHHHHHHHH
Q 027412 35 CGYCSLNRLDEAVQLFEKLTC----VQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPK-----ANVVTYSCLI 104 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~ 104 (223)
+.|--.++|..|-..|.+..+ .|.+.|.. +|.....+| +..++++|.+.++..++.-.. .-...+-.+.
T Consensus 42 n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 42 NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIA 120 (288)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHH
Confidence 334444455555555544422 23333433 444444444 455777777777665543111 1112223355
Q ss_pred HHHHhh-CChhHHHHHHHHHHHC--CCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 027412 105 DGYFKS-QNMKSAFDVYEEMCEN--NISPNI---VSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDV 167 (223)
Q Consensus 105 ~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 167 (223)
..|-.. .++++|+..|+..-+- |-..+. ..+.-+...-...+++.+|+.+|++........+.
T Consensus 121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 121 EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 555443 6778888888876542 111111 22333344455678999999999988776554333
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.17 E-value=0.041 Score=35.30 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=56.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (223)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 345666677788888888888887665567788888888888887777777777621 1122244566666666
Q ss_pred ChhHHHHHHHHH
Q 027412 112 NMKSAFDVYEEM 123 (223)
Q Consensus 112 ~~~~a~~~~~~~ 123 (223)
.++++.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666666543
No 322
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=93.05 E-value=0.96 Score=28.21 Aligned_cols=44 Identities=5% Similarity=0.028 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 116 AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
..+-+..+..-++-|++.+...-++++.+.+|+..|.++|+-.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555555555544
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=2.2 Score=29.96 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=51.8
Q ss_pred HHhhCChhHHHHHHHHHHHC----C-CCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhC--CCCCCH---HHHHHHHH
Q 027412 107 YFKSQNMKSAFDVYEEMCEN----N-ISPNIVSYSILIDGLCKR-GLMEEALYAFHCALDN--HLLPDV---VTYAILIR 175 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~ 175 (223)
|.+..++++|...++..++. | +..-...+..+...|-.- .++++|+..|+..-+. |-..+. ..+.-+..
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 34444677666666655532 1 000111222344444443 6777777777766542 111122 22333344
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCCCch
Q 027412 176 GYCKAGRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 176 ~~~~~g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
.-...+++.+|+.+|++.....+..+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 456778999999999999876554443
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.75 E-value=0.28 Score=21.97 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=7.1
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 027412 141 GLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~ 158 (223)
++.+.|++++|.+.|+++
T Consensus 9 ~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 333334444444444333
No 325
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.59 E-value=1.7 Score=34.77 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=48.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.|+...|...+....-..+.-..+..-.|.+...+.|-...|..++.+..... ...+-++..+.+++.-..+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35555555555554332211122223344444555555555555555554443 22334455556666666666666666
Q ss_pred HHHHHhcCCCccHHHHHHHH
Q 027412 85 FSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~ 104 (223)
|++..+..+. +...-+.|.
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHH
Confidence 6666555443 444444443
No 326
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.58 E-value=2.1 Score=28.42 Aligned_cols=135 Identities=12% Similarity=0.111 Sum_probs=86.6
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 027412 12 LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 91 (223)
.+.++.+.+.+++|+...+..+++.+.+.|++.....++ ..++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 455666777899999999999999999999877655444 4444555554443333332 2334455554455443
Q ss_pred CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 92 GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
. ...+..++..+...|++-+|.++.+.....+ ......++.+..+.+|...-..+++-..+
T Consensus 88 -L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 -L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 1245667788999999999999998754322 22234566777777776665555554444
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.51 E-value=1.9 Score=29.90 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=27.6
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 55 (223)
.+.+++++|+...+.-.+.. +.+...-..+++.++-.|+|++|..-++-.-+
T Consensus 12 L~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34555666666555544442 22344445555666666666666555554443
No 328
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.50 E-value=3.4 Score=30.76 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh---cCCHHHHHHHHH
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK---RGLMEEALYAFH 156 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 156 (223)
.-+.++++.++.++. +...+..++..+.+..+.++..+-++++.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 344455555555443 55555555555555555555555566555542 3344555555444433 223444444444
Q ss_pred HHHhC------CC------CCC-----HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 027412 157 CALDN------HL------LPD-----VVTYAILIRGYCKAGRPTEAMQLYDSMLRNGI 198 (223)
Q Consensus 157 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 198 (223)
+.++. +. .++ ...+..+...+...|..+.|..+++-+++.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33311 10 001 12233334445677888888888888887754
No 329
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=6.1 Score=33.64 Aligned_cols=187 Identities=20% Similarity=0.193 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCC--CCC-cHHHHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCccHHHHHH-
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKP-NSITFTILIDAFCKEGRM--DDATMMFSKMLEKGPKANVVTYSC- 102 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 102 (223)
-|..|+..|...|+.++|++++.+..... ..+ -...+..++....+.+.. +...++-+.....++......+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999987632 011 112233355555555544 556666666555443322222211
Q ss_pred -----------HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC--------HHHHHHH-----HHHH
Q 027412 103 -----------LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL--------MEEALYA-----FHCA 158 (223)
Q Consensus 103 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~ 158 (223)
.+-.|.....++.+..+++.+....-.++....+.++..|...=+ -+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 233456677888899999999876555677777888777764311 1122222 1112
Q ss_pred Hh--CCCCC--------CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-------------CCCCchhhHHHHhhhHhhc
Q 027412 159 LD--NHLLP--------DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN-------------GIMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 159 ~~--~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~ 215 (223)
++ ....| ....|....-.+.+.|+.++|+.++-..+.. ...++...|..+++.+...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 21 11112 2234444444455888899988888766541 1234667788888877655
No 330
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.43 E-value=1.4 Score=26.31 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 027412 45 EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 91 (223)
+..+-++.+......|++.+....+++|.+.+++..|+++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555566666666667777777777777777777777777666554
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.42 E-value=6 Score=33.40 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=108.7
Q ss_pred cccCHHHHHHHHHHHhhCCCCcC-------HHHHHHHHH-HHHhcCchhHHHHHHHHHHhC----CCCCcHHHHHHHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPD-------IITYNTIIC-GYCSLNRLDEAVQLFEKLTCV----QLKPNSITFTILIDA 71 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~ 71 (223)
...++++|..++.++...-..|+ ...++.+-. +....|+++.|.++.+..... ...+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 45678888888888765422222 123444332 334567888888888776543 233355667778888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCccH---HHHHHH--HHHHHhhCChhH--HHHHHHHHHHC---CCC---CChhHHHHH
Q 027412 72 FCKEGRMDDATMMFSKMLEKGPKANV---VTYSCL--IDGYFKSQNMKS--AFDVYEEMCEN---NIS---PNIVSYSIL 138 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l--~~~~~~~~~~~~--a~~~~~~~~~~---~~~---~~~~~~~~l 138 (223)
..-.|++++|..+..+..+....-+. ..|..+ ...+...|+... ....+...... ..+ +-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 88899999999988777665222232 233333 234555663332 22223222211 111 123345555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 027412 139 IDGLCKR-GLMEEALYAFHCALDNHLLPDVVT--YAILIRGYCKAGRPTEAMQLYDSMLRNGIM 199 (223)
Q Consensus 139 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 199 (223)
..++.+. +...++...++-.......|-... +..|+......|+.++|...+.++......
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 5555552 222233333333323333222222 247888899999999999999988865333
No 332
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.33 E-value=3.3 Score=30.18 Aligned_cols=190 Identities=14% Similarity=0.039 Sum_probs=127.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----c
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----E 75 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 75 (223)
..+++..+...+......+ +......+...|.. ..+..+|..+|....+.| .......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4567788888888877643 22444555555544 346788999999877665 33444456666665 4
Q ss_pred CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC-------ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----
Q 027412 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-------NMKSAFDVYEEMCENNISPNIVSYSILIDGLCK---- 144 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 144 (223)
.+..+|...+++....|..+...+...+...|.... +...|...+.++...+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 488999999999999886643233444555555431 2347889999888876 45566666666644
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CcchHHHHHHHHHHCCCCCchhhHH
Q 027412 145 RGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAG---------------RPTEAMQLYDSMLRNGIMPDGLLLS 206 (223)
Q Consensus 145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~~p~~~~~~ 206 (223)
..++.+|..+|....+.|. ......+. .+...| +...|...+......|.........
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3488999999999988875 33333333 444444 7778888888888887766666666
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=4.5 Score=32.66 Aligned_cols=133 Identities=16% Similarity=0.079 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (223)
...+.++..+.+.|-.++|+++ .+|+... .....+.|+++.|.++..+.. +..-|..|..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 3566777777777777777654 2333221 233456799999988876642 677899999999
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 027412 108 FKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAM 187 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 187 (223)
.+.+++..|.+.|..... |..|+..+...|+-+....+-....+.|. .|. ...+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-----AFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-----HHHHHHHcCCHHHHH
Confidence 999999999999987654 44566677778887766666666666664 232 233556678888888
Q ss_pred HHHHHH
Q 027412 188 QLYDSM 193 (223)
Q Consensus 188 ~~~~~~ 193 (223)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 777554
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.11 E-value=0.35 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=5.4
Q ss_pred HHHHhcCCHHHHHH
Q 027412 140 DGLCKRGLMEEALY 153 (223)
Q Consensus 140 ~~~~~~~~~~~a~~ 153 (223)
.++...|++++|..
T Consensus 9 ~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 9 RALLAQGDPDEAER 22 (26)
T ss_pred HHHHHcCCHHHHHH
Confidence 33333344333333
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.84 E-value=3.8 Score=29.86 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 170 YAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 170 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
++.....|..+|.+.+|.++.++..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt 307 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT 307 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh
Confidence 34444555555555555555555554
No 336
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.78 E-value=4.3 Score=30.36 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=52.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 130 PNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLP---DVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
....++..++..+.+.|.++.|...+.++...+... .+.....-++.....|+..+|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445678889999999999999999999988754211 345556667778888999999999988887
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.68 E-value=3.8 Score=29.59 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=46.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh--
Q 027412 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK-- 144 (223)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 144 (223)
.=|++++..++|.++....-+--+.--+.-+.....-|-.|.+.+++..+.++-..-....-.-+..-|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 345667777777776655443332211112233444455566777777666665554432111222335555555443
Q ss_pred ---cCCHHHHHHHH
Q 027412 145 ---RGLMEEALYAF 155 (223)
Q Consensus 145 ---~~~~~~a~~~~ 155 (223)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 47777777666
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.52 E-value=0.79 Score=22.69 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=11.4
Q ss_pred HHHHHHhhCChhHHHHHHHHHHH
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
+..+|...|+.+.|..++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44445555555555555554443
No 339
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.47 E-value=3.2 Score=28.25 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=69.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKGPKAN--VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR 145 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (223)
+...+...+++++|+..++.........+ ..+-..|.+.....|.+++|+..++.....+ ........-...+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHc
Confidence 45567789999999999998775422111 1222336777889999999999998876653 2344455667889999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 027412 146 GLMEEALYAFHCALDNH 162 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~ 162 (223)
|+-++|+.-|+...+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998875
No 340
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.41 E-value=3.4 Score=32.45 Aligned_cols=110 Identities=19% Similarity=0.120 Sum_probs=76.3
Q ss_pred HHHHHhhCChhHHHHHHHHHH---HCCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH-
Q 027412 104 IDGYFKSQNMKSAFDVYEEMC---ENNISPN-----IVSYSILIDGLCKRGLMEEALYAFHCALD-------NHLLPDV- 167 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~- 167 (223)
...+.-.|++.+|.+++...- ..|...+ -..+|.+...+.+.|.+..+..+|.+.++ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 455667899999988875432 1121112 22347777777888888888888877763 4544422
Q ss_pred ----------HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhc
Q 027412 168 ----------VTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 168 ----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 215 (223)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|..+..+|.-.
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2333 345678899999999999998875 678889999999998754
No 341
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.03 E-value=1 Score=25.53 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=29.3
Q ss_pred hcCchhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhHHHHH
Q 027412 39 SLNRLDEAVQLFEKLTCVQLKPN--SITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
..++.++|+..+....+....+. -.++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777765533322 13556677777777777776655
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.78 E-value=1.4 Score=22.86 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=15.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHH
Q 027412 173 LIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 208 (223)
Q Consensus 173 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 208 (223)
+..++.+.|++++|.+..+.+++ +.|+......|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 33444555555555555555555 34554443333
No 343
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.69 E-value=3.8 Score=29.19 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCccHHHHHHHHHHHHhhCChhHHHH
Q 027412 44 DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK----G-PKANVVTYSCLIDGYFKSQNMKSAFD 118 (223)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 118 (223)
..|...|...... .......-.+..-|...|++++|.++|+.+... | ..+...+...+..++.+.|+.+....
T Consensus 162 ~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 162 EKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455555544332 223344456778888899999999998887532 2 23445666778888888888888777
Q ss_pred HHHHHH
Q 027412 119 VYEEMC 124 (223)
Q Consensus 119 ~~~~~~ 124 (223)
+--++.
T Consensus 240 ~~leLl 245 (247)
T PF11817_consen 240 TSLELL 245 (247)
T ss_pred HHHHHh
Confidence 655543
No 344
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=8.9 Score=31.85 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhH
Q 027412 133 VSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 212 (223)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 212 (223)
-+.+--+.-+...|+..+|.++-.+.+ + |+...|..-+.+++..++|++-+++-+... ++.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk---i-pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK---I-PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC---C-cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444555555566666665544332 2 566666666666666666665554443321 133444455555
Q ss_pred hhcCCCccc
Q 027412 213 LQSSGSQEH 221 (223)
Q Consensus 213 ~~~~~~~~~ 221 (223)
.+.|+..++
T Consensus 755 ~~~~n~~EA 763 (829)
T KOG2280|consen 755 LKQGNKDEA 763 (829)
T ss_pred HhcccHHHH
Confidence 555554443
No 345
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.56 E-value=4.3 Score=32.69 Aligned_cols=87 Identities=18% Similarity=0.082 Sum_probs=42.1
Q ss_pred cCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 027412 75 EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYA 154 (223)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 154 (223)
.|+...|...+.......+.-..+....|.....+.|-...|-.++.+..... ...+-++..+.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555444433332223333334444444455555555555554433 23334455555555555555555555
Q ss_pred HHHHHhCC
Q 027412 155 FHCALDNH 162 (223)
Q Consensus 155 ~~~~~~~~ 162 (223)
|+...+..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 55555443
No 346
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.30 E-value=5.5 Score=28.97 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-cCCCccHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHC-CCCCChhHHHHHHH
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLE-KGPKANVVTYSCLIDGYFKSQ--NMKSAFDVYEEMCEN-NISPNIVSYSILID 140 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 140 (223)
|..|+. .+....+|+++|+.... ..+-.|..+...+++...... ....-.++.+-+... +-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 544443 33456778888873322 123347777777777776522 222233333333322 34788889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH-----HHCCCCCchhhHHHHhhhH
Q 027412 141 GLCKRGLMEEALYAFHCALDN-HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM-----LRNGIMPDGLLLSTLADYN 212 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~p~~~~~~~l~~~~ 212 (223)
.+++.++|.+-.++++..... ++..|...|..++......|+..-...+.++- .+.|+..+...-..+-+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999999999999999987765 66678999999999999999988777766542 2446666666555554444
No 347
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.25 E-value=5.4 Score=28.82 Aligned_cols=191 Identities=13% Similarity=0.134 Sum_probs=118.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCH---HHHHHHHHHHHhcCchhHHHHHHHHHHhC---CC--CCcHHHHHHHHHHHHhc
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDI---ITYNTIICGYCSLNRLDEAVQLFEKLTCV---QL--KPNSITFTILIDAFCKE 75 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 75 (223)
+...+++|+.-|.+..+....... .+...++....+.+++++....|.++... .+ .-+....|++++.-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345789999999998876333333 34556788999999999999988887532 11 22445667777766666
Q ss_pred CChhHHHHHHHHHHhc-----CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC----C-------CChhHHHHHH
Q 027412 76 GRMDDATMMFSKMLEK-----GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI----S-------PNIVSYSILI 139 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-------~~~~~~~~l~ 139 (223)
.+.+.-..+++..... +-..--.|-..|...|...+++.+...+++++...-- . .-..+|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6655544444433221 1111122345678888889999988888888864310 1 1134667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH----HHhcCCcchHHHHHHHHH
Q 027412 140 DGLCKRGLMEEALYAFHCALDN-HLLPDVVTYAILIRG----YCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~ 194 (223)
+.|..+.+-.+...++++.+.. .--|.+.....+-.+ ..+.|++++|..-|-+.-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 8888888777777888876532 122555444333222 346677887766554443
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.22 E-value=0.72 Score=19.75 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=6.8
Q ss_pred HHHHhhCChhHHHHHHHH
Q 027412 105 DGYFKSQNMKSAFDVYEE 122 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~ 122 (223)
..+...++++.|...++.
T Consensus 9 ~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 9 NAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333333333333333333
No 349
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=90.10 E-value=3.6 Score=26.58 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=38.2
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 027412 14 LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (223)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (223)
+.+.+.+.|+++++. -..++..+...++.-.|.++++.+.+.++..+..|...-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334455566665542 345566666666667777777777776666655555445566655554
No 350
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.10 E-value=8.9 Score=36.21 Aligned_cols=118 Identities=11% Similarity=0.098 Sum_probs=54.3
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhC-C-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCV-Q-LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (223)
.+..+-.+.+.+.+|...+++-... . -......+..+...|...++++....+...-. - +...+. .+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a--~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF---A--DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh---c--CccHHH-HHHHHHh
Confidence 3344455566666666666652100 0 01112223333336666666666555554310 1 112222 2333444
Q ss_pred hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 027412 110 SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (223)
.|+++.|...|+.+...+ ++....++.++..-...|.++......+
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhc
Confidence 566666666666666553 3334445555554445555555444333
No 351
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=90.00 E-value=7 Score=29.72 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHH
Q 027412 43 LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101 (223)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (223)
+-+|..+++...... +.+...--.++..|...|-.+.|...|..+.-+.++.|...|.
T Consensus 199 l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 199 LLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 346666777666554 3355666667788888888888888888776665655544444
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.92 E-value=2.8 Score=25.07 Aligned_cols=79 Identities=10% Similarity=0.050 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHH
Q 027412 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121 (223)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 121 (223)
..++|..+-+.+...+-. ...+--.-+..+.+.|++++|..+.+.+ +.||...|..|. -.+.|..++....+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 345555555555433211 1112222233455667777776666554 456666665543 335555666666666
Q ss_pred HHHHCC
Q 027412 122 EMCENN 127 (223)
Q Consensus 122 ~~~~~~ 127 (223)
.+...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 665555
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.86 E-value=2.2 Score=24.23 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=25.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhhCChhHHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKGPKAN--VVTYSCLIDGYFKSQNMKSAFDV 119 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 119 (223)
...+.++|+..+....+.-..+. -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665533322 12445556666666666655544
No 354
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=5.6 Score=28.17 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=74.9
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChh
Q 027412 36 GYCSLNRLDEAVQLFEKLTCVQLKPNS-ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (223)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (223)
.|.....++.|+..|.+.+.. .|+. ..|+.=+.++.+..+++.+..--.+.++..+. .+.....+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhcccc
Confidence 355566788888877776655 4554 55667777888888888888777776665433 3334445667777888888
Q ss_pred HHHHHHHHHHH----CCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 027412 115 SAFDVYEEMCE----NNISPNIVSYSILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 115 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (223)
+|+..+.+... ..+++-......|..+--+.=...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 89888887743 2334444455555554444444444444444
No 355
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=11 Score=31.43 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=84.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 027412 3 IKECHLDAALKLFGQLTDRGLEP---DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (223)
.+.+.+++|++..+..... .| ........+..+...|++++|-...-.|.. -+..-|......+...++..
T Consensus 367 l~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccc
Confidence 4567788888877765543 33 244667778888888888888888887763 35556666666666665554
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHH------------------HHHCCCCCChhHHHHHHHH
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE------------------MCENNISPNIVSYSILIDG 141 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~~l~~~ 141 (223)
....++ -...+..++..|..++..+.. .+...-.++..+ ..+ . .-+......|+..
T Consensus 441 ~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q-~-Se~~~L~e~La~L 514 (846)
T KOG2066|consen 441 DIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ-N-SESTALLEVLAHL 514 (846)
T ss_pred hhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh-h-ccchhHHHHHHHH
Confidence 433222 111222455667766666665 222221111111 000 0 1122344557888
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 027412 142 LCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 142 ~~~~~~~~~a~~~~~~~~~ 160 (223)
|...+++.+|...+-.+.+
T Consensus 515 Yl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHccChHHHHHHHHhccC
Confidence 8888999999888876643
No 356
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.44 E-value=20 Score=34.23 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=96.8
Q ss_pred ccccCHHHHHHHHHHHhhCCC--CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 3 IKECHLDAALKLFGQLTDRGL--EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
.+.+.+.+|+..++.-..... ......+..+...|+..+++|....+...... .|+ .+. -+......|++..
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEASGNWAD 1467 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHhhccHHH
Confidence 356788899999888311110 12234455566699999999998888774221 222 233 3344556799999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHH-HHHHHhcCCHHHHHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSIL-IDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~ 156 (223)
|...|+++.+.+++ ...+++-++......+.++......+-..... .+....++.+ +.+--+.+++|.......
T Consensus 1468 a~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999998765 57778888888888888888888776665442 3334444333 344456777777766654
No 357
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.44 E-value=1.1 Score=34.69 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=66.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLM 148 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 148 (223)
+..+...+.++.|+.++.+.++..+. ....|..-..++.+.+++..|+.=..++++.. +-....|.--..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHH
Confidence 44555667888888888888886554 45555555678888888888888777777754 22233344444555566666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 027412 149 EEALYAFHCALDNHLLPDVVTYAILIRGYC 178 (223)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
.+|...|+..... .|+..-...++.-|-
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 6777766665543 355555554444443
No 358
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.35 E-value=10 Score=30.57 Aligned_cols=186 Identities=10% Similarity=-0.011 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
+...|...+..-...|+.+.+.-+|++..-- +..=...|-..+.-....|+.+-|..++....+...+..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3567888888888899999999888887521 111223444455555556888888888877666544433443333344
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHH-----HH
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEAL---YAFHCALDNHLLPDVVTYAILIR-----GY 177 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~-----~~ 177 (223)
..-..|++..|..+++.+.+.- +.-...-..-+....+.|..+.+. .++........ +......+.- .+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHH
Confidence 4556789999999999988763 333344444455666778888777 44433332211 2222222111 23
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcC
Q 027412 178 CKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 216 (223)
Q Consensus 178 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 216 (223)
.-.++.+.|..++.++.+. +.++...|..++..+....
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 4457888899999888875 4556666777776655444
No 359
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.32 E-value=6.7 Score=28.57 Aligned_cols=154 Identities=18% Similarity=0.080 Sum_probs=99.5
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC----
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG---- 76 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 76 (223)
..+..+|.++|....+.|. ......|...|.. ..+..+|..+|++..+.|..+-..+...+...|..-.
T Consensus 90 ~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 90 SRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 3467889999997777653 3344556665655 4488999999999999885543333455555555431
Q ss_pred ---ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC---
Q 027412 77 ---RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG--- 146 (223)
Q Consensus 77 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 146 (223)
+...|...+.+....+ +......+...|.. ..++++|..+|....+.|. ......+. .+...|
T Consensus 167 ~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~ 239 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGV 239 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCc
Confidence 2347888888888776 44555556655543 3478899999999999873 33444444 444444
Q ss_pred ------------CHHHHHHHHHHHHhCCCCCCHH
Q 027412 147 ------------LMEEALYAFHCALDNHLLPDVV 168 (223)
Q Consensus 147 ------------~~~~a~~~~~~~~~~~~~~~~~ 168 (223)
+...|...+......+......
T Consensus 240 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 240 KKAAFLTAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 6666666666666655543333
No 360
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=6.2 Score=27.96 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=77.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCH-HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhcCChh
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDI-ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMD 79 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 79 (223)
|.....++.|+..|.+.+.. .|+. .-|..=+-++.+..+|+.+..=-.+..+. .|+.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44567789999988887766 5565 45677788888999999988777777655 45543 4445777778888999
Q ss_pred HHHHHHHHHHhc----CCCccHHHHHHHHHHHHhhCChhHHHHHHH
Q 027412 80 DATMMFSKMLEK----GPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121 (223)
Q Consensus 80 ~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 121 (223)
.|+..+.+.... .+.+....+..|..+--..-...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 999998877432 344445566666655444333444444443
No 361
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.08 E-value=4.5 Score=26.23 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=29.2
Q ss_pred hcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 027412 39 SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92 (223)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 92 (223)
..++.+++..++..+.-..+. ....-..-...+...|+|.+|.++|+.+...+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 456667777777666554322 11222223334456677777777777766554
No 362
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.79 E-value=10 Score=29.97 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCC
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG-LMEEALYAFHCALDNH 162 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 162 (223)
|+..|...+..+-+.+.+.+.-.+|.+|.... |.++..|-....-....+ ..+.|..+|.+.++.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 44555555544444444555555555555432 333333333222222222 2455555554444433
No 363
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.32 E-value=1.1 Score=33.19 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=69.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-IVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 152 (223)
..|.++.|++.|...+..++. ....|..-..++.+.+.+..|++=+......+ || ..-|-.-..+..-.|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 456777777777777776553 66666666777777888888887777777643 33 233444444455567888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 153 YAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
..+....+.+..+.... .+-...-+.+..++-...+++.
T Consensus 203 ~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHH
Confidence 88887777765443332 2333333444444444444433
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.22 E-value=3.9 Score=24.49 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=22.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 140 DGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
..+.++|+|++|..+.+.. ..||...|..+.. .+.|-.+++..-+.+|...
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3344555555555544322 2345544444322 2444444444444444443
No 365
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.20 E-value=9 Score=28.59 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=97.6
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHhcC------------chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 15 FGQLTDRGLEPDIITYNTIICGYCSLN------------RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
|++..+.. +-|..+|..++..--..- -.+.-+.+++++.+.++ .+......++..+.+..+.++..
T Consensus 8 l~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 33444433 447888888875333221 24566788899887754 47778888899999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHh---hCChhHHHHHHHHHHHC------CC----CCC-------hhHHHHHHHHH
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFK---SQNMKSAFDVYEEMCEN------NI----SPN-------IVSYSILIDGL 142 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~-------~~~~~~l~~~~ 142 (223)
+.++++....+. +...|...+..... .-.++....+|.+.... +. .+. ..++..+....
T Consensus 86 ~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 999999998766 78888887776654 23455666666554421 11 011 11233344445
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 027412 143 CKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~ 163 (223)
...|..+.|..+++.+.+.++
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHCCchHHHHHHHHHHHHHHc
Confidence 678999999999999988765
No 366
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=88.04 E-value=6.3 Score=26.61 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHCCCCCC---hhH-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 113 MKSAFDVYEEMCENNISPN---IVS-----YSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~---~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
.+.|+.+|+.+.+.- +++ ... -...+..|.+.|.+++|.+++++.... |+......-+...++..+
T Consensus 85 LESAl~v~~~I~~E~-~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEF-SLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 467888888887653 222 111 233456788889999999999888763 455444555555555554
No 367
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.77 E-value=19 Score=31.82 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=26.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 139 IDGLCKRGLMEEALYAFHCALDNHLLPDV--VTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+.+|..+|+|.+|+.+..++... .+. .+-..|+.-+...+++-+|-++..+...
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 44455555555555555444221 111 1124455556666666666665555443
No 368
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=87.75 E-value=1.8 Score=31.51 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhH
Q 027412 171 AILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLL 205 (223)
Q Consensus 171 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 205 (223)
+..|....+.||+++|++++++..+.|+.--..+|
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 45555555556666666666655555554444443
No 369
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.58 E-value=5.8 Score=28.27 Aligned_cols=61 Identities=11% Similarity=-0.014 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALD----NHL-LPDVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
....+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445677788889999999999887752 222 2345566777888888888888777766554
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=87.45 E-value=2.5 Score=21.34 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=18.2
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCchhhHHHHhh
Q 027412 178 CKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 210 (223)
Q Consensus 178 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 210 (223)
.+.|-.+++..++++|.+.|+..++..+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 444555555556666655555555555555443
No 371
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.24 E-value=4.3 Score=33.12 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccH---------
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV--------- 97 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------- 97 (223)
..+...+...+.+...+..|-++|.+|-. ...+++.....++|.+|..+-++.-+. .|++
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 44455555555666667777777777642 124666777788888888777654331 1111
Q ss_pred --HHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 98 --VTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 98 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
.-|...-++|.+.|+..+|.++++++...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 12333445566666666666666666543
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=87.20 E-value=3.2 Score=22.32 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHH
Q 027412 30 YNTIICGYCSLNRLDEAVQLFEKLT 54 (223)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (223)
.-.++.++...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555556666666665555553
No 373
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.47 E-value=6.8 Score=25.34 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCC-----CCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNI-----SPNIVSYSILIDGLCKRGL-MEEALYAFHCALDNHLLPDVVTYAI 172 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 172 (223)
..++++.-....++......+++.+..... ..+...|..++.+..+... ---+..+|.-+.+.+.++++..|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666666667777777777777643210 2344456667766655554 3345566666666566667777777
Q ss_pred HHHHHHhcC
Q 027412 173 LIRGYCKAG 181 (223)
Q Consensus 173 l~~~~~~~g 181 (223)
++.++.+..
T Consensus 121 li~~~l~g~ 129 (145)
T PF13762_consen 121 LIKAALRGY 129 (145)
T ss_pred HHHHHHcCC
Confidence 777766543
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.24 E-value=7 Score=26.56 Aligned_cols=33 Identities=24% Similarity=0.038 Sum_probs=23.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 129 SPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
.|++.++..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577777777777777777777777777776654
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.98 E-value=8.1 Score=26.26 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC
Q 027412 164 LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMP 200 (223)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 200 (223)
.|++.+|..++.++...|+.++|.++..++.. .-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 47888899999999999999999999998887 455
No 376
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.91 E-value=13 Score=31.89 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCC---CCCChhHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENN---ISPNIVSYSILIDGLCKRGLM--EEALYAFHCALDNHLLPDVVTYA-- 171 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 171 (223)
-|..|+..|...|+.++|+++|.+..... ...-...+..++....+.+.. +-.+++-+-..+..+......+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999987632 111122344456666666554 55555554444433221111111
Q ss_pred ----------HHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcC
Q 027412 172 ----------ILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 216 (223)
Q Consensus 172 ----------~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 216 (223)
..+-.|......+-+..+++.+....-.++....+.++..|++.-
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v 640 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKV 640 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHH
Confidence 123345667788889999999998766777788888888877643
No 377
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=85.86 E-value=7.9 Score=29.44 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH-HHH
Q 027412 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT-MMF 85 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~ 85 (223)
.+-+|+-+++...... +.+...--.+++.|...|-...|..+|..+.-..+..|.-.+. +..-+...|....+. ..+
T Consensus 198 ~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~-~~~r~~~~~~~~~~~~~~~ 275 (365)
T PF09797_consen 198 YLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL-ILDRLSTLGPFKSAPENLL 275 (365)
T ss_pred HHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH-HHHHHhccCcccccchHHH
Confidence 4556777888877764 4466677788999999999999999998875444444444333 222233333333333 333
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHH
Q 027412 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 122 (223)
+...+.-.. +.......+....+.|.+.+..++.+-
T Consensus 276 ~~~~~fy~~-~~~~~~e~i~~af~~gsysKi~ef~~F 311 (365)
T PF09797_consen 276 ENALKFYDN-SEKETPEFIIKAFENGSYSKIEEFIEF 311 (365)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 322221100 111112234444556666666655543
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=85.85 E-value=8.6 Score=25.99 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHhcCCCccH--H-----HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 027412 78 MDDATMMFSKMLEKGPKANV--V-----TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK 144 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~--~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (223)
.+.|+.+++.+.+.-..|.. . .--..+..|.+.|.+++|.+++++.... |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 45677777777665443311 1 1223455678888888888888888763 343333444444443
No 379
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.26 E-value=0.81 Score=33.81 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=64.6
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHH
Q 027412 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116 (223)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (223)
....|.++.|++.|...+..+ ++....|..-.+++.+.+.+..|++=++.....++. +..-|-.-..+-...|+|+++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 345677888888888877665 335556666667777788888888888777776544 334444445555667888888
Q ss_pred HHHHHHHHHCCCCCCh
Q 027412 117 FDVYEEMCENNISPNI 132 (223)
Q Consensus 117 ~~~~~~~~~~~~~~~~ 132 (223)
.+.|....+.++.+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 8888888877654443
No 380
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.98 E-value=5.8 Score=23.33 Aligned_cols=54 Identities=24% Similarity=0.165 Sum_probs=31.3
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 143 CKRGLMEEALYAFHCALDN----HLLP----DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.+.|++..|.+.+.+..+. +... -......+.......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777775555544432 2111 1123334555667778888888888887754
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.46 E-value=4.1 Score=31.68 Aligned_cols=102 Identities=23% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChh
Q 027412 36 GYCSLNRLDEAVQLFEKLTCVQLKPN-SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (223)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (223)
.+...+.++.|..++.++++. .|+ ...|..=..++.+.+++..|+.=+...++..+. ....|.--..++...+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 344455666666666666655 332 222333335556666666666655555554433 3334444445555556666
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 115 SAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
+|...|+.... +.|+..-..-.+.-|
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 66666666555 345544444444333
No 382
>PRK10941 hypothetical protein; Provisional
Probab=84.25 E-value=14 Score=26.89 Aligned_cols=80 Identities=10% Similarity=-0.034 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL-LPDVVTYAILIRGY 177 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 177 (223)
..+.+-.+|.+.++++.|+.+.+.+.... |.++.-+.--...|.+.|.+..|..-++...+.-+ .|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34556677888888888888888888764 56666677777778888888888888877765432 24555555555544
Q ss_pred Hh
Q 027412 178 CK 179 (223)
Q Consensus 178 ~~ 179 (223)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.23 E-value=17 Score=27.95 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=36.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCccHH--HHHHHHHHHH--hhCChhHHHHHHHHHHHC
Q 027412 70 DAFCKEGRMDDATMMFSKMLEKGPKANVV--TYSCLIDGYF--KSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 126 (223)
..+.+.+++..|.++++.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888876 443333 4444444443 456777888888877654
No 384
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=83.81 E-value=5.2 Score=32.47 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=0.0
Q ss_pred hcCCcchHHHHHHHHHHCCCCCchhhHHHHhhh
Q 027412 179 KAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 211 (223)
Q Consensus 179 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 211 (223)
..|++.+|.+.+-.+.+.+..|...-...|.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 447788888888888887777776655555544
No 385
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=83.66 E-value=2.2 Score=27.00 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=17.8
Q ss_pred hcCCcchHHHHHHHHHHCCCCCchhhHHHHhhh
Q 027412 179 KAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 211 (223)
Q Consensus 179 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 211 (223)
..|.-..|-.+|++|++.|-.|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 33555566666666666666665 44555443
No 386
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.31 E-value=22 Score=28.51 Aligned_cols=166 Identities=13% Similarity=0.088 Sum_probs=110.3
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
+-.++-...+..+|...| -+...+..++.+|... ..++-..+++++.+..+. |+..-..|...|-+ ++.+.+..+
T Consensus 79 n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~ 153 (711)
T COG1747 79 NHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEF 153 (711)
T ss_pred chHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHH
Confidence 334555666677777764 3667888999999888 668888999999887655 55555556666655 888888888
Q ss_pred HHHHHhcCCCc-----cHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 85 FSKMLEKGPKA-----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-NISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 85 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
|.++..+-++. -...|.-+...- ..+.+....+..++... |...-...+..+-.-|....++++|++++...
T Consensus 154 f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 154 FGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 88876652220 123455444321 35677777777777643 33334455666667788889999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHH
Q 027412 159 LDNHLLPDVVTYAILIRGYC 178 (223)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~ 178 (223)
++.+- .|...-..++.-+.
T Consensus 232 l~~d~-k~~~ar~~~i~~lR 250 (711)
T COG1747 232 LEHDE-KDVWARKEIIENLR 250 (711)
T ss_pred hhhcc-hhhhHHHHHHHHHH
Confidence 87654 35555555555443
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.19 E-value=25 Score=29.06 Aligned_cols=179 Identities=18% Similarity=0.203 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHH-hCCCCCc--HHHHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCccHH---
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKPN--SITFTILIDAFC-KEGRMDDATMMFSKMLEKGPKANVV--- 98 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 98 (223)
+...|..||.. |+..++.+. ...++|. ..++-.+...+. ...+++.|+..+.+......+++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 45566666653 445555555 3333333 345555666665 6789999999999876654332222
Q ss_pred --HHHHHHHHHHhhCChhHHHHHHHHHHHCC----CCCChhHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHH
Q 027412 99 --TYSCLIDGYFKSQNMKSAFDVYEEMCENN----ISPNIVSYSIL-IDGLCKRGLMEEALYAFHCALDNH---LLPDVV 168 (223)
Q Consensus 99 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 168 (223)
.-..++..+.+.+... |...+++.++.- ..+-...+..+ +..+...+++..|.+.++.+...- ..|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2334566777766655 999888877541 11222333333 333333479999999998876432 334555
Q ss_pred HHHHHHHHHH--hcCCcchHHHHHHHHHHCCC---------CCchhhHHHHhhhHhh
Q 027412 169 TYAILIRGYC--KAGRPTEAMQLYDSMLRNGI---------MPDGLLLSTLADYNLQ 214 (223)
Q Consensus 169 ~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~---------~p~~~~~~~l~~~~~~ 214 (223)
++..++.+.. +.+..+++.+.++++..... .|...++..+++.++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~ 235 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCS 235 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHH
Confidence 5555665544 44556778888877743321 2345677777776554
No 388
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=82.96 E-value=27 Score=29.28 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=33.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 139 IDGLCKRGLMEEALYAFHCALDN-HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.+-....|..+.|++.--.+.+. .+-|....|+.+.-+.+..+.+...-+.|-++...
T Consensus 1028 AQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1028 AQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 33344556666666654444332 34466677777777766666666666666555543
No 389
>PRK09687 putative lyase; Provisional
Probab=82.80 E-value=16 Score=26.68 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 114 KSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
..+...+..+.. .++..+-...+.++.+.++ ..+...+-...+.+ + .....+.++...|.. +|...+..+
T Consensus 191 ~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 191 PDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 345555555553 3466666777777777777 44555555555432 2 234566777777775 577777777
Q ss_pred HHCCCCCchhhHHHHhhhHh
Q 027412 194 LRNGIMPDGLLLSTLADYNL 213 (223)
Q Consensus 194 ~~~~~~p~~~~~~~l~~~~~ 213 (223)
.+. .||..+-...+.+|.
T Consensus 261 ~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 261 LYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred Hhh--CCChhHHHHHHHHHh
Confidence 763 456666666665553
No 390
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=82.66 E-value=5 Score=29.35 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDNHLL 164 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (223)
-|+..|....+.||+++|+.++++..+.|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3456677777777777777777777776654
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=82.65 E-value=5.7 Score=21.33 Aligned_cols=16 Identities=38% Similarity=0.283 Sum_probs=5.6
Q ss_pred HHHHhcCCHHHHHHHH
Q 027412 140 DGLCKRGLMEEALYAF 155 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~ 155 (223)
.++...|++++|.+++
T Consensus 31 ~gllqlg~~~~a~eYi 46 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYI 46 (62)
T ss_dssp HHHHHTT-HHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3333333333333333
No 392
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.63 E-value=23 Score=28.24 Aligned_cols=109 Identities=11% Similarity=-0.044 Sum_probs=74.3
Q ss_pred HHHhcCChhHHHHHHHHHHh---cCC--Cc---cHHHHHHHHHHHHhhCChhHHHHHHHHHHH-------CCCCCCh---
Q 027412 71 AFCKEGRMDDATMMFSKMLE---KGP--KA---NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-------NNISPNI--- 132 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~---~~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~--- 132 (223)
.+.-.|++.+|.+++-..-- .|. .| ....||.+.-...+.|.+..+..+|.++.+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 44557899999888754321 111 11 223467777777888888888888877764 3544421
Q ss_pred -------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 027412 133 -------VSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA 180 (223)
Q Consensus 133 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
.......-.|...|++-.|.+.|.+.... +..++..|.-+..+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23344566788899999999999887653 346888999999998754
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=82.12 E-value=7.8 Score=22.53 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=5.8
Q ss_pred CChhHHHHHHHHHH
Q 027412 111 QNMKSAFDVYEEMC 124 (223)
Q Consensus 111 ~~~~~a~~~~~~~~ 124 (223)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444433
No 394
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=82.04 E-value=16 Score=26.04 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCch
Q 027412 165 PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 165 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
|.+.....++..|.. +++++|.+.+.++.+.|..|..
T Consensus 237 PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 237 PHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH
Confidence 444444444444333 4455555555555555555543
No 395
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.78 E-value=21 Score=27.61 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=28.9
Q ss_pred HHHHhhCCCCcCHHH--HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCChhHHHHHHH
Q 027412 15 FGQLTDRGLEPDIIT--YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI--TFTILIDAFCKEGRMDDATMMFS 86 (223)
Q Consensus 15 ~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 86 (223)
++.+.+.|..|+... -.+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 334444555544322 22334445556665533 3333344333321 11123344455666655544443
No 396
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.43 E-value=12 Score=24.04 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHHhhCC---hhHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 95 ANVVTYSCLIDGYFKSQN---MKSAFDVYEEMCENNISP--NIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
++..+-..+..++.+..+ ..+.+.+++.+.+.. +| .......|.-++.+.++++.++++.+.+++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 445555556666666544 445667777776522 22 23344556667778888888888887777654
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.14 E-value=11 Score=23.73 Aligned_cols=47 Identities=4% Similarity=0.130 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
+..+-+.....-+..|++.....-+++|.+.+|+..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455556666677788888888888888888888888888877644
No 398
>PRK10941 hypothetical protein; Provisional
Probab=81.11 E-value=19 Score=26.22 Aligned_cols=80 Identities=16% Similarity=-0.018 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCchhhHHHHhhhH
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN-GIMPDGLLLSTLADYN 212 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~ 212 (223)
..+.+-.+|.+.++++.|+++.+.+....+ .++.-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 457777889999999999999999998776 46666777777899999999999999988875 2345555555555555
Q ss_pred hh
Q 027412 213 LQ 214 (223)
Q Consensus 213 ~~ 214 (223)
-+
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 399
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.75 E-value=31 Score=28.56 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=62.8
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 027412 107 YFKSQNMKSAFDVYEEMCENNISPN------IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA 180 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
..+..+|..+.++|..-... ++.| ......+.-+|.+..++|.|.++++++.+.++ .++.+--.+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHh
Confidence 45667788888888765432 2222 22456677788888999999999999988765 3666666777888888
Q ss_pred CCcchHHHHHHHHHH
Q 027412 181 GRPTEAMQLYDSMLR 195 (223)
Q Consensus 181 g~~~~a~~~~~~~~~ 195 (223)
|.-++|+........
T Consensus 442 ~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKS 456 (872)
T ss_pred cchHHHHHHHHHHHh
Confidence 888888887766653
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=80.13 E-value=25 Score=29.20 Aligned_cols=91 Identities=12% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChh------HHHHHHHHHHhcCCCccHHHHHHH
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCKEGRMD------DATMMFSKMLEKGPKANVVTYSCL 103 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 103 (223)
.|..+|...|++-++.++++.+...+ -+.-...+|..++...+.|.++ .+.+.+++.. ..-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 77788888888888888888876543 2223456777777778887754 3334444333 33466777777
Q ss_pred HHHHHhhCChhHHHHHHHHHHH
Q 027412 104 IDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
+.+....-+-.-...++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7666554444444444444443
No 401
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.02 E-value=3.9 Score=17.78 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=10.8
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSC 102 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (223)
+.+.+..+|+++....+. +...|..
T Consensus 2 ~~~~~r~i~e~~l~~~~~-~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPK-SVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCC-ChHHHHH
Confidence 344445555555444332 3444443
No 402
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=79.58 E-value=6.3 Score=19.87 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=17.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 027412 143 CKRGLMEEALYAFHCALDNHLLPDVVTYAILI 174 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 174 (223)
.+.|-.+++...+++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455556666666666666555555555444
No 403
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.50 E-value=37 Score=28.64 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 162 HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.+.|| |..+.+++....+.+.+.++++++.+.
T Consensus 208 ~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 208 LPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred CCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 44455 455677888888888888888888773
No 404
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=79.42 E-value=14 Score=23.88 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC
Q 027412 50 FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (223)
.+.+.+.|.+++.. -..++..+.+.++.-.|.++++++.+.++..+..|-..-+..+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444555554443 23355666666666677777777777666554444333444444443
No 405
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=79.14 E-value=48 Score=29.80 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=90.4
Q ss_pred HHHhcCchhHHHH------HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH-------HhcCCCccHHHHHH
Q 027412 36 GYCSLNRLDEAVQ------LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM-------LEKGPKANVVTYSC 102 (223)
Q Consensus 36 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 102 (223)
.....|.+.++.+ ++......--++....|..+...+-+.++.++|...-... ...+..-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444555665555 4443221111335567778888888888888887764432 22223334556666
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHC-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--CCCHH
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCEN-------NISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN-----HL--LPDVV 168 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~ 168 (223)
+...+...++...|...+...... .-||...+++.+-..+...++++.|.++++.+... |+ -++..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666677777777776665532 12344445566655566668888888888877642 11 13455
Q ss_pred HHHHHHHHHHhcCCcchHHHH
Q 027412 169 TYAILIRGYCKAGRPTEAMQL 189 (223)
Q Consensus 169 ~~~~l~~~~~~~g~~~~a~~~ 189 (223)
++..+.+.+...+++..|...
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 666666666666666654443
No 406
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.08 E-value=26 Score=26.73 Aligned_cols=120 Identities=18% Similarity=0.123 Sum_probs=77.8
Q ss_pred cCHHHHHHHHHHHhhCC-----------CCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHh-------CCC-----CC--
Q 027412 6 CHLDAALKLFGQLTDRG-----------LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-------VQL-----KP-- 60 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~-----~~-- 60 (223)
..+.++...|......+ .+-...++..+..++...|+.+.|.+++++..- ..+ .+
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 34555555555544432 123456677777888899998888877776521 112 11
Q ss_pred -----------cHHHHH---HHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHH-HhhCChhHHHHHHHHHHH
Q 027412 61 -----------NSITFT---ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY-FKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 61 -----------~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~ 125 (223)
|...|. ..+..+.+.|-+..|.++.+-+...++.-|+......|..| .+.++++-.+++.+....
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 222332 34556678899999999999998888776776666667665 467788878888777654
No 407
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=78.98 E-value=9.6 Score=26.02 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=36.2
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHCCCC--------------CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 027412 102 CLIDGYFKSQNMKSAFDVYEEMCENNIS--------------PNIVSYSILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 102 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (223)
+++..|.+..+|.++..+++.|.+..+. +--...|.....+.+.|..|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4556677777788888888777654322 223455666677777777777777765
No 408
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=78.96 E-value=12 Score=22.79 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355566666666666666666666554
No 409
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.72 E-value=25 Score=26.29 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA---NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
...+|..+...+.+.|.++.|...+.++...+... .+......++.....|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455556666666666666666665555432111 223333344555555555666555555444
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.95 E-value=11 Score=21.97 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=14.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 130 PNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
.|......+...+...|+++.|++.+-.+.+.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444444444555555555555544444433
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.91 E-value=7.9 Score=20.07 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=7.8
Q ss_pred HHHhhCChhHHHHHHHHHHH
Q 027412 106 GYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~ 125 (223)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 33344444444444444433
No 412
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.82 E-value=25 Score=25.85 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=55.2
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCccHHHHHH
Q 027412 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNS-------ITFTILIDAFCKEGRMDDATMMFSKMLEK----GPKANVVTYSC 102 (223)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 102 (223)
.+-..+.+++++|+..+.++...|...+. .+...+...|...|++..-.+.....+.. ..+........
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 33444556666666666666655544433 23344556666666655444443322211 11112223333
Q ss_pred HHHHHHhh-CChhHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 103 LIDGYFKS-QNMKSAFDVYEEMCENNISPN-----IVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 103 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
|+.-+... ..++..+.+.....+...+.. ...-.-++..+.+.|.+.+|+.++..+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33333221 223333333332222110111 111234566677777777777665543
No 413
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=77.75 E-value=26 Score=29.11 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=57.1
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 027412 102 CLIDGYFKSQNMKSAFDVYEEMCENN--ISPNIVSYSILIDGLCKRGLME------EALYAFHCALDNHLLPDVVTYAIL 173 (223)
Q Consensus 102 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 173 (223)
+|+.+|...|++..+.++++.+...+ -+.-...+|..++.+.+.|.++ .+.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 68899999999999999999887542 2233457788888888888765 2333343333 33466777777
Q ss_pred HHHHHhcCCcchHHHHHHHHHH
Q 027412 174 IRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 174 ~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+++-..--.-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6665443333333334444443
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.22 E-value=4.2 Score=25.80 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=21.0
Q ss_pred hCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 027412 110 SQNMKSAFDVYEEMCENNISPNIVSYSILIDG 141 (223)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (223)
.|.-..|..+|++|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 4555668888888888887776 56666544
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.58 E-value=13 Score=21.84 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=13.4
Q ss_pred HHHHHHhhCChhHHHHHHHHHHH
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44445556666666666666553
No 416
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.10 E-value=18 Score=23.23 Aligned_cols=68 Identities=10% Similarity=0.183 Sum_probs=43.8
Q ss_pred CCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHh-cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 59 KPNSITFTILIDAFCKEGR---MDDATMMFSKMLE-KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
.++..+--.+.-++.+..+ ..+.+.+++.+.+ ..+.........|.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4455555556666665543 5566777777775 333333344444667788888888888888888774
No 417
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.00 E-value=35 Score=26.48 Aligned_cols=95 Identities=16% Similarity=0.016 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---------CCCc
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK---------GPKA 95 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 95 (223)
...+.-+..-|...|+++.|++.|.+...-- ....+..|-.++..-.-.|+|.....+..+..+. .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3467778888899999999999998865432 1223445666666667778888777777666543 1122
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 123 (223)
-...+..+...+ .++++.|...|-..
T Consensus 230 kl~C~agLa~L~--lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLL--LKKYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHH--HHHHHHHHHHHHhC
Confidence 233344343333 34677776666444
No 418
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=75.75 E-value=14 Score=22.55 Aligned_cols=47 Identities=11% Similarity=-0.078 Sum_probs=28.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 027412 138 LIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPT 184 (223)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 184 (223)
++..+...+..-.|.++++.+.+.++..+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44444455555567777777766665556666655666666666544
No 419
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=75.08 E-value=33 Score=25.84 Aligned_cols=145 Identities=12% Similarity=-0.003 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHH
Q 027412 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121 (223)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 121 (223)
.|+.-.+++++=...........+-.-...-......+.-..++.+...+ +. -......++...-+.++.++|+++++
T Consensus 22 ew~~leeLy~eKLW~QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~k-IN-plslvei~l~~~~~~~D~~~al~~Le 99 (380)
T KOG2908|consen 22 EWDRLEELYEEKLWHQLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETK-IN-PLSLVEILLVVSEQISDKDEALEFLE 99 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhc-cC-hHHHHHHHHHHHHHhccHHHHHHHHH
Q ss_pred HHHHCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHH--HHhcCCcchHHH
Q 027412 122 EMCENNISPNI-----VSYSILIDGLCKRGLMEEALYAFHCALD-----NHLLPDVVTYAILIRG--YCKAGRPTEAMQ 188 (223)
Q Consensus 122 ~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~--~~~~g~~~~a~~ 188 (223)
++.+.-...+. ......++.+...|+..++.+.+++..+ .+++|++.+--..+.. |...|++....+
T Consensus 100 ~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 100 KIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHH
No 420
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.91 E-value=14 Score=21.57 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=28.0
Q ss_pred HhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCC
Q 027412 89 LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-NIVSYSILIDGLCKRGL 147 (223)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 147 (223)
...+|. |...-..+...+...|++++|++.+-.+.+.+-.. +...-..++..+.-.|.
T Consensus 15 ~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 15 LAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 333444 55555556666666666666666666665543211 23344444444444443
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.64 E-value=14 Score=21.47 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHH
Q 027412 46 AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116 (223)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (223)
+.+++....+.|+- +......+-.+--..|+.+.|.++++.+. +|+ ..|..++.++...|+-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 44556666666533 33333333332234577778888887776 443 3666677777776665544
No 422
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=74.40 E-value=17 Score=22.08 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=10.3
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 027412 68 LIDAFCKEGRMDDATMMFSKM 88 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~ 88 (223)
++.-|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444444555555555555554
No 423
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=74.05 E-value=33 Score=25.38 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=56.8
Q ss_pred hcCchhHHHHHHHHHHhCCC----CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChh
Q 027412 39 SLNRLDEAVQLFEKLTCVQL----KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (223)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (223)
..+-.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++..... ++...-..++.+.+...+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHH
Confidence 44456677777777665321 234444555555556666655544444444322 24555666777777777777
Q ss_pred HHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCCH--HHHHHHHH
Q 027412 115 SAFDVYEEMCENN-ISPNIVSYSILIDGLCKRGLM--EEALYAFH 156 (223)
Q Consensus 115 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~ 156 (223)
...++++.....+ +++. . ...++..+...+.. +.+.+++.
T Consensus 219 ~~~~~l~~~l~~~~v~~~-d-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 219 LLKRLLDLLLSNDKVRSQ-D-IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHHHHCTSTS-TT-T-HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccH-H-HHHHHHHHhcCChhhHHHHHHHHH
Confidence 7777777777643 3322 2 23333344323322 55555554
No 424
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=74.02 E-value=14 Score=22.80 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=18.1
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhh
Q 027412 173 LIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 214 (223)
Q Consensus 173 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 214 (223)
++..+...+.+-.|.++++.+.+.+...+..|.-.-++.+..
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 334444444444555555555554444444444444444333
No 425
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=73.87 E-value=12 Score=20.14 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=13.6
Q ss_pred hcCchhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 027412 39 SLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70 (223)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 70 (223)
+.|++-+|.++++.+-.....+....+..+|.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 44555555555555543322223333444443
No 426
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.06 E-value=35 Score=25.18 Aligned_cols=156 Identities=12% Similarity=0.140 Sum_probs=88.2
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCH-------HHHHHHHHHHHhcCchhHHHHHHHHHHh----CCCCCcHHHHHHHHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDI-------ITYNTIICGYCSLNRLDEAVQLFEKLTC----VQLKPNSITFTILIDA 71 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~ 71 (223)
.+.+++++|+..+.++...|+..+. .+...+...|...|++..--+......+ ..-+........|+..
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 3568899999999999998877664 3455677888888887765554443321 1111233445556665
Q ss_pred HHhc-CChhHHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHhhCChhHHHHHHHHH----HHCCCCCChhHHHHH-HH
Q 027412 72 FCKE-GRMDDATMMFSKMLEKGPKAN-----VVTYSCLIDGYFKSQNMKSAFDVYEEM----CENNISPNIVSYSIL-ID 140 (223)
Q Consensus 72 ~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l-~~ 140 (223)
+... ..++..+.+.....+-...-. ...-.-++..+.+.|++.+|+.+...+ .+.+-+++..+...+ -.
T Consensus 94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESK 173 (421)
T COG5159 94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESK 173 (421)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHH
Confidence 5443 345555555544433211101 122244778889999999998776544 343444544333222 23
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 027412 141 GLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~ 158 (223)
+|-...+..++..-+...
T Consensus 174 vyh~irnv~KskaSLTaA 191 (421)
T COG5159 174 VYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHhhhhhhhHHHHH
Confidence 344445555554444433
No 427
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=73.03 E-value=36 Score=25.33 Aligned_cols=70 Identities=7% Similarity=0.160 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH----------hcCCHHHH
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC----------KRGLMEEA 151 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 151 (223)
.++++.+.+.++.|.-.++.-+.-.+.+.=....++.+|+.+... +.-|..++..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777888888888777777766777777788888888888653 222555555554 35888888
Q ss_pred HHHHH
Q 027412 152 LYAFH 156 (223)
Q Consensus 152 ~~~~~ 156 (223)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 88775
No 428
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.68 E-value=43 Score=26.02 Aligned_cols=164 Identities=14% Similarity=0.075 Sum_probs=86.0
Q ss_pred cccccCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC---------CCCcHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR--GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---------LKPNSITFTILID 70 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~ 70 (223)
|...|+++.|++.|.+.... ..+.....|..+|.+-.-.|+|.....+..+..+.- +.+....+..+..
T Consensus 160 y~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~ 239 (466)
T KOG0686|consen 160 YLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLAN 239 (466)
T ss_pred HHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHH
Confidence 45689999999999986543 112345677888888888999998888887776431 2222333333433
Q ss_pred HHHhcCChhHHHHHHHHHHhcC------CCc-cHHHHHHHHHHHHhhCChhHHH-----HHHHHHHHCCCCCChhHHHHH
Q 027412 71 AFCKEGRMDDATMMFSKMLEKG------PKA-NVVTYSCLIDGYFKSQNMKSAF-----DVYEEMCENNISPNIVSYSIL 138 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~l 138 (223)
.. .+++..|.+.|-...... +.| |..+|..+ -+.+-.++-+--. ..|+.+.+ ..+.....+
T Consensus 240 L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL-cALAtfdr~~Lk~~vi~n~~Fk~fle----l~Pqlr~il 312 (466)
T KOG0686|consen 240 LL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL-CALATFDRQDLKLNVIKNESFKLFLE----LEPQLREIL 312 (466)
T ss_pred HH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhh-HhhccCCHHHHHHHHHcchhhhhHHh----cChHHHHHH
Confidence 33 346666666653322111 112 44555533 2222222211111 12222222 233344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 027412 139 IDGLCKRGLMEEALYAFHCALDN-----HLLPDVVTYAILI 174 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 174 (223)
...| .+++...+++++++... -+.|++.+.-.+|
T Consensus 313 ~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 313 FKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred HHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 4433 34678888888777642 2334554444443
No 429
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=72.39 E-value=26 Score=23.38 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=29.1
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 19 TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
.+.|++.+.. -..++..+...++.-.|.++++.+.+.+..++..|...-+..+.+.|-.
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3345544432 2233444444445556666666666655555554444444555555443
No 430
>PRK09857 putative transposase; Provisional
Probab=72.18 E-value=37 Score=25.08 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc
Q 027412 133 VSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
..+..++......++.++..++++.+.+... ......-+++.-+.+.|.-+++.++..+|...|+.++
T Consensus 207 ~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~-~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 207 RQIKGLFNYILQTGDAVRFNDFIDGVAERSP-KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHhCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3345566555667777777777776665422 3444555677778888888888899999999888766
No 431
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=72.05 E-value=70 Score=28.20 Aligned_cols=189 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred cccccCHHHHHHHHHHH-hhCCCCcC---HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHH--------
Q 027412 2 LIKECHLDAALKLFGQL-TDRGLEPD---IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI-------- 69 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------- 69 (223)
++..++|.+|..+.++- ...++-.| ...+..+-...-+-++.+---.++..+.+. ..+...|....
T Consensus 704 ~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E--Dvt~tmY~~~~~~~~~~~~ 781 (928)
T PF04762_consen 704 LLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE--DVTKTMYKDTYPPSSEAQP 781 (928)
T ss_pred HHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc--ccccccccccccccccccc
Q ss_pred ----HHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 70 ----DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ--NMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 70 ----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
......++....-..+......... .......++.+|.+.+ ++++|+....++.+.+...-..+...++-.--
T Consensus 782 ~~~~~~~~~~~KVn~ICdair~~l~~~~~-~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvD 860 (928)
T PF04762_consen 782 NSNSSTASSESKVNKICDAIRKALEKPKD-KDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLVD 860 (928)
T ss_pred ccccCCCccccHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeecc
Q ss_pred hcCCHHHHHHHHH----HHHhCCCCCCHHHHHHHHHHH-------------HhcCCcchHHHHHHHH
Q 027412 144 KRGLMEEALYAFH----CALDNHLLPDVVTYAILIRGY-------------CKAGRPTEAMQLYDSM 193 (223)
Q Consensus 144 ~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~~ 193 (223)
-..-++.|+-+|+ .|....-+.|+.=|.-.++-+ ...+++++|++-+.++
T Consensus 861 vn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 861 VNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 432
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=71.92 E-value=18 Score=22.11 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=24.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
++..+...+..-.|.++++.+.+.+..++..|....++.+.+.|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3344444445555666666666555445555544455555555543
No 433
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.89 E-value=33 Score=24.39 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=15.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGY 37 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 37 (223)
.|+++++...++++...+...+..-.+.|..+|
T Consensus 14 ~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 14 AERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp TTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 455566666666655554444444444444444
No 434
>PRK09462 fur ferric uptake regulator; Provisional
Probab=71.69 E-value=24 Score=22.80 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=30.9
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhc-CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 18 LTDRGLEPDIITYNTIICGYCSL-NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
+.+.|.+++.. -..++..+... +..-.|.++++.+.+.++..+..|...-+..+.+.|-.
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34445554432 23333444433 34566666776666665555555544455555555543
No 435
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.57 E-value=32 Score=24.05 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 78 MDDATMMFSKMLEKGPKA-----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
...|.+.|.+.......| .....-.+.....+.|++++|.+.|..+...
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 345666666555432211 1233334556666777777777777777654
No 436
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=71.45 E-value=8.7 Score=17.53 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=9.7
Q ss_pred cchHHHHHHHHHHCCCCCchhhH
Q 027412 183 PTEAMQLYDSMLRNGIMPDGLLL 205 (223)
Q Consensus 183 ~~~a~~~~~~~~~~~~~p~~~~~ 205 (223)
++.|..+|++.+. +.|+..+|
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 3445555555544 24444444
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.41 E-value=45 Score=25.73 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=37.7
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHH--hcCChhHHHHHHHHHHhc
Q 027412 35 CGYCSLNRLDEAVQLFEKLTCVQLKPNSI--TFTILIDAFC--KEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 91 (223)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788899999999888875 444443 4555555554 345678888888876654
No 438
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=71.22 E-value=23 Score=26.40 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHH-HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 027412 60 PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC-LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSIL 138 (223)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 138 (223)
.|+..|...+....+.|.+.+...++.+..+.+|. |+..|-. -..-+...++++.+..+|....+.+ +.++..|...
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ey 182 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWIEY 182 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHHHH
Confidence 36667776666666778888899999999888775 7766654 3344567789999999999988775 5555665443
No 439
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=71.20 E-value=15 Score=20.05 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 027412 130 PNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYC 178 (223)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
|....++.++..+++-.-.++++..+.++.+.|. .+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3444555555555555555566666655555554 34444444444433
No 440
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=71.18 E-value=17 Score=22.46 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 445555555556666777777777666565655544455555555543
No 441
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.33 E-value=21 Score=21.46 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 027412 43 LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 91 (223)
.....+.+++....+....+-....|...|++.|+.+.+.+-|+.-...
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 3444556666655553333333445666777888888888777765544
No 442
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.27 E-value=38 Score=24.42 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhC------CCCCc-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 027412 31 NTIICGYCSLNRLDEAVQLFEKLTCV------QLKPN-----------SITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (223)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 93 (223)
..=.+-+.+.|++.+|..-|.+..-. .-+|- ...+-...+++...|++-++++.-.+++...+
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 33344566677777777666654211 11221 11223334455556677777777777766655
Q ss_pred CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 94 KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
. +..+|..-.++.+..-+.++|..-|....+.
T Consensus 262 ~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 262 G-NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 4 6666666666666666666677666666654
No 443
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=69.50 E-value=38 Score=24.16 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------C-C------------CCHH
Q 027412 114 KSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH------------L-L------------PDVV 168 (223)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~-~------------~~~~ 168 (223)
++|..+++.-... ..++.+...+..++...|+...+.++++.+.... . . .+++
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vE 193 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVE 193 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHH
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHH
Confidence 3445555444221 3455555555556666666666666666654210 0 0 1234
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 169 TYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 169 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
+-...+.++.+.++.+.+..+.+-+.+.
T Consensus 194 tTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 194 TTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4444445556668888888888777764
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.36 E-value=52 Score=25.64 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEK-------GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
+...|++.++-.||+..|+++++.+.-. -+.-...++-.+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788889999999988765321 122244567778888888899999998888764
No 445
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=68.60 E-value=45 Score=24.59 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL 147 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 147 (223)
++..+.+.++.....+.+..+. ....-...+......|++..|++++.+..+ -...+..+-..---..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred HHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 027412 148 MEEALYAFHCALDNHLL-----PDVVTYAILIRGYCKAGRPTEAMQLYDS 192 (223)
Q Consensus 148 ~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 192 (223)
+++-....+.+.+..+. .|+..|..+..+|.-.|+...+..-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 446
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=68.29 E-value=17 Score=19.57 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=21.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH-----hhCChhHHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-----KSQNMKSAFDV 119 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~ 119 (223)
+.|++-+|-++++.+-.....+....+..+|.... +.|+.+.|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45666666666666654433334444544444332 34444444443
No 447
>PRK09687 putative lyase; Provisional
Probab=67.23 E-value=47 Score=24.34 Aligned_cols=87 Identities=11% Similarity=0.022 Sum_probs=41.1
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 027412 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG-LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA 180 (223)
Q Consensus 102 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
..+.++.+.++ +.+...+-.+.+ .++..+-...+.++.+.+ +.+.+...+..+... ++..+-...+.++.+.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHcc
Confidence 33444444443 334444444443 233344444444444432 133455545444432 4555566666666666
Q ss_pred CCcchHHHHHHHHHHC
Q 027412 181 GRPTEAMQLYDSMLRN 196 (223)
Q Consensus 181 g~~~~a~~~~~~~~~~ 196 (223)
|+ ..+...+-+..+.
T Consensus 220 ~~-~~av~~Li~~L~~ 234 (280)
T PRK09687 220 KD-KRVLSVLIKELKK 234 (280)
T ss_pred CC-hhHHHHHHHHHcC
Confidence 66 3455555555543
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=67.05 E-value=35 Score=22.77 Aligned_cols=62 Identities=6% Similarity=-0.119 Sum_probs=38.1
Q ss_pred HHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 027412 123 MCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE 185 (223)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 185 (223)
+...|+..+..- ..++..+...++.-.|.++++.+.+.++..+..|..--+..+.+.|-..+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 345565554433 34445555555566778888887777766666666666677777776543
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.94 E-value=29 Score=21.82 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhhCChhHHHHHH
Q 027412 43 LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAFDVY 120 (223)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 120 (223)
.+++...|..-..- ..|+......+..-.... .+..+|..|... |.. ....|......+...|++++|.++|
T Consensus 49 Ler~~~~f~~~~~Y--~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~-~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 49 LERCIRKFKDDERY--KNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTK-LALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHTTSGGG--TT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTT-BHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHhhhHhh--cCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHH
Q 027412 121 EEMC 124 (223)
Q Consensus 121 ~~~~ 124 (223)
+..+
T Consensus 123 ~~Gi 126 (126)
T PF08311_consen 123 QLGI 126 (126)
T ss_dssp HHHH
T ss_pred HhhC
No 450
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.21 E-value=84 Score=26.87 Aligned_cols=177 Identities=18% Similarity=0.265 Sum_probs=92.5
Q ss_pred HHHHHHhhCCCCcC---HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH----------HHHHHHHHHHhcCChh
Q 027412 13 KLFGQLTDRGLEPD---IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI----------TFTILIDAFCKEGRMD 79 (223)
Q Consensus 13 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~ 79 (223)
..+++|.++--.|+ ..+...++-.|....+++..+++.+.+... ||.. .|...++---+.|+-+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHH
Confidence 45566666532333 566777777888888999999999988764 3221 1222222223457788
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHH---------HHhhCChhHHHHHHHHHHHCCCCCChhH---HHHHHHHHHhcCC
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDG---------YFKSQNMKSAFDVYEEMCENNISPNIVS---YSILIDGLCKRGL 147 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 147 (223)
+|+...-.+.+..-+..+..|....+. |...+..+.|.++|++.-+ +.|+... +..|+.+-.+ +
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~ 336 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--H 336 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--h
Confidence 888877766665322233333333333 3344556778888888766 3554432 2222222221 1
Q ss_pred HHHHHHH------HHHHH-hCCCCCCHHHH---HHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 148 MEEALYA------FHCAL-DNHLLPDVVTY---AILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 148 ~~~a~~~------~~~~~-~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
++...++ +..++ +.|.-.+...| ...+.+-+-.+++.+|.+.-+.|.+.
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 2222111 11111 11111111111 22344455668888888888888874
No 451
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.44 E-value=23 Score=25.11 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=42.6
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 027412 36 GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (223)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (223)
...+.++.+.+.+++.+..+.-++ ....|-.+...--+.|+++.|.+-+++..+.++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 345667788888888888765432 5566777777778888888888888888876654
No 452
>PRK09462 fur ferric uptake regulator; Provisional
Probab=63.98 E-value=37 Score=21.97 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=34.4
Q ss_pred HHHHCCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 027412 122 EMCENNISPNIVSYSILIDGLCKR-GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPT 184 (223)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 184 (223)
.+...|++++.. -..++..+... +..-.|.++++.+.+.++..+..|..--+..+...|-..
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344455554433 33344444443 345677777777776666556666555566666666543
No 453
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=63.39 E-value=82 Score=25.78 Aligned_cols=137 Identities=18% Similarity=0.098 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHH
Q 027412 41 NRLDEAVQLFEKLTCVQLK-PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (223)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 119 (223)
+++++|+...++....+.. ....+-..++.. +.......-...|++..+.+|. -.....-++..+.. ...+.++
T Consensus 323 ~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~-~d~~~~~~l~~~~e~~~~~~P~-~~~~le~l~~~~~~---~~~~~~L 397 (547)
T PF14929_consen 323 GRLKEALNELEKFCISSTCALPIRLRAHLLEY-FDQNNSSVLSSCLEDCLKKDPT-MSYSLERLILLHQK---DYSAEQL 397 (547)
T ss_pred ccHHHHHHHHHHhccCCCccchHHHHHHHHHH-hCcccHHHHHHHHHHHhcCCCc-HHHHHHHHHhhhhh---HHHHHHH
Confidence 7788888777776544211 112222223332 2333566677788888776654 22233333333322 5556667
Q ss_pred HHHH-HHCCCCCChhHHHHHHHHHHh-cC-------CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 027412 120 YEEM-CENNISPNIVSYSILIDGLCK-RG-------LMEEALYAFHCALDN-HLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 120 ~~~~-~~~~~~~~~~~~~~l~~~~~~-~~-------~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 182 (223)
++.+ ...+..|...+|.-+...+.+ .+ +...+.+++-.+.+. +...+..+|..+....-+...
T Consensus 398 le~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 398 LEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFD 470 (547)
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhh
Confidence 7644 233445888888888888887 33 333444444444443 344566777776666554444
No 454
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.22 E-value=57 Score=23.91 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=115.6
Q ss_pred CCCCcCHHHHHHHHHHH-HhcCchhHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 027412 21 RGLEPDIITYNTIICGY-CSLNRLDEAVQLFEKLTCVQLKPNS---ITFTILIDAFCKEGRMDDATMMFSKMLEK----- 91 (223)
Q Consensus 21 ~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 91 (223)
.+..||+..-|..-..- .+..++++|+.-|++..+....... .+...++..+.+.+++++....+.++..-
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34566665544332211 2344788999999998876433333 34556788889999999999988887642
Q ss_pred CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 027412 92 GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-----NISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN----- 161 (223)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 161 (223)
...-+....|+++.......+.+-...+++.-... +-..--.|-.-+...|...+++.+..++++++...
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 11123456677777666666666655555543321 00111123356778888888888888888877632
Q ss_pred CC------CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCchhhHH
Q 027412 162 HL------LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN-GIMPDGLLLS 206 (223)
Q Consensus 162 ~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~ 206 (223)
|- ..-...|..=++.|....+-.+...++++.+.- .-.|.+....
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG 231 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG 231 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh
Confidence 11 012356777788899999888888899877643 2345554443
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.27 E-value=74 Score=24.86 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhC--C-----CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCV--Q-----LKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (223)
+...|++..+-.|++..|+++++.+.-. + +.-.+.++..++-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888899999999999876321 1 11134567778999999999999999998764
No 456
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.97 E-value=1.1e+02 Score=26.63 Aligned_cols=91 Identities=18% Similarity=0.078 Sum_probs=61.1
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCCh----h---HHHHH-HHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHH
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNI----V---SYSIL-IDGLCKRGLMEEALYAFHCALDN----HLLPDVVTYAIL 173 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 173 (223)
......++++|..++.++...--.|+. . .++.+ .......|+++.|.++.+..... ...+....++.+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345667899999998888754212221 1 23333 22344678999999888877643 233456677788
Q ss_pred HHHHHhcCCcchHHHHHHHHHHC
Q 027412 174 IRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 174 ~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
..+..-.|++++|..+..+..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHH
Confidence 88888889999999988777654
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.68 E-value=76 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=14.3
Q ss_pred CcCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 027412 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLT 54 (223)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (223)
..+......++... .|+...+..+++.+.
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAA 201 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 33444444444332 466666666655543
No 458
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.46 E-value=69 Score=24.28 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 027412 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87 (223)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (223)
+.+|.++|++..+. ....|+ +..+...--...+.+.+.+...-...-..|..+..+.|+..+|.+.|++
T Consensus 232 i~~AE~l~k~ALka----~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKA----GETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHH----HHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHhcCCCccHH-HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHH
Q 027412 88 MLEKGPKANVV-TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSI 137 (223)
Q Consensus 88 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 137 (223)
+.+.-+-.+.. ....|+.++....-+..+..++-+..+...+.+......
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
No 459
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=61.27 E-value=79 Score=24.86 Aligned_cols=110 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred cccccCHHHHHHHHHHHhhC------CCCcCHHHHHHHHHHHHh------------------cCchhHHHHHHHHHHhCC
Q 027412 2 LIKECHLDAALKLFGQLTDR------GLEPDIITYNTIICGYCS------------------LNRLDEAVQLFEKLTCVQ 57 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~ 57 (223)
+...|++.+|+..|+.++.. .-+-...-...++..|.. ..+..+..++---+...+
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~ 293 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAYFTHCK 293 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS-
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC
Q ss_pred CCCcHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC
Q 027412 58 LKPNSI--TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 58 ~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (223)
+.|... +...-|..+.+.+++..|-.+-+++++.++.+....-..-+...+...
T Consensus 294 LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~ 349 (422)
T PF06957_consen 294 LQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERN 349 (422)
T ss_dssp --HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS
T ss_pred CcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
No 460
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.06 E-value=35 Score=20.78 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777778888888888888877765
No 461
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.50 E-value=95 Score=25.53 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=98.3
Q ss_pred cccCHHHHHHHHHHHhhCC-----------CCcCHHHHHHHHHHHHhcCchhHHHHHHH-------HHHhCCCCCc----
Q 027412 4 KECHLDAALKLFGQLTDRG-----------LEPDIITYNTIICGYCSLNRLDEAVQLFE-------KLTCVQLKPN---- 61 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~---- 61 (223)
....+++|...|.-..... .+....+...+..++...|+.+.+-.+++ ++..-.+.|.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3456777777776655431 12234556667778888888765555544 4443333332
Q ss_pred ---------HHHHHH---HHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH-hhCChhHHHHHHHHHHHCC-
Q 027412 62 ---------SITFTI---LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEEMCENN- 127 (223)
Q Consensus 62 ---------~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~- 127 (223)
...|-. -+..+.+.|-+..|.++.+-+.+.++.-|+.....++..|+ +..+|+-.+++++.....+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 222222 34456678999999999999999887767888888887775 6778888888888775432
Q ss_pred --CCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHh
Q 027412 128 --ISPNIVSYSILIDGLCKRGL---MEEALYAFHCALD 160 (223)
Q Consensus 128 --~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 160 (223)
.-|+-..-.+++..|..... -..|...+.++..
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 23554444455666666554 3455555555554
No 462
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.37 E-value=35 Score=20.54 Aligned_cols=60 Identities=13% Similarity=-0.001 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 027412 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILI 139 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 139 (223)
.+.-++.++++...+...-+.....|...|++.|+.+.+.+-|+.=.. ..|...+|.-++
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFL 112 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHH
Confidence 445566777777665444455566688889999999999999987555 456666655443
No 463
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=60.37 E-value=1.3e+02 Score=27.16 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--chhHHHHHHHHHHh
Q 027412 10 AALKLFGQLTDRGLEPDIITYNTIICGYCSLN--RLDEAVQLFEKLTC 55 (223)
Q Consensus 10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 55 (223)
..-+..+....+. .|+ .....++..|.+.+ ..+.++....+...
T Consensus 775 ~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 775 SVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3334444443332 344 45567888888877 67777777766653
No 464
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.60 E-value=70 Score=23.75 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCccHHHHH-HHHHHHHhhCChhHHHHHHHHHHHCCCCCChh--
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEK----GPKANVVTYS-CLIDGYFKSQNMKSAFDVYEEMCENNISPNIV-- 133 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 133 (223)
-..++..+...|++.++.+.+.+..++..+. |.+.|+...- -|.-.|....-.++.++..+.+.+.|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 4567888999999999999999888776554 4443332211 12333444444667777777888877544432
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 134 --SYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 134 --~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
+|..+- +....++.+|-.++.....
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 222221 2334567777777766654
No 465
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=59.09 E-value=38 Score=20.49 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCchhHHHHHHHHH
Q 027412 31 NTIICGYCSLNRLDEAVQLFEKL 53 (223)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~ 53 (223)
..++.-|...++.++|..-+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34455566667777777777665
No 466
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=58.58 E-value=53 Score=24.63 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSI-LIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAI 172 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 172 (223)
|+..|...+.-..+.+-+.+.-.++.++.... |.|+..|-. ...-+...++++.+..+|.+.++.+.. ++..|..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~e 181 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWIE 181 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHHH
Confidence 67788877777777888899999999998875 777776654 333456788999999999988876653 4444433
No 467
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.28 E-value=69 Score=23.21 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CCCCcHHHHHHHHHHHHhcCChh
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKPNSITFTILIDAFCKEGRMD 79 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~ 79 (223)
+.+++++|++++..-... +.+.|+...|.++..-+.+. +.+++......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga~~---------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI---------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH---------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Q ss_pred -HHHHHHHHHHh-----cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 027412 80 -DATMMFSKMLE-----KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALY 153 (223)
Q Consensus 80 -~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 153 (223)
.-.++.+.+.+ ..+.-++.....+...|.+.+++.+|...| -.+-.++...+..++......|...++
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf----l~~~~~~~~~~~~ll~~~~~~~~~~e~-- 140 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF----LLGTDPSAFAYVMLLEEWSTKGYPSEA-- 140 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH----HTS-HHHHHHHHHHHHHHHHHTSS--H--
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH----HhcCChhHHHHHHHHHHHHHhcCCcch--
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 154 AFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
..-..-.+--|.-.++...|...+....+
T Consensus 141 -------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 -------------DLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp -------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
No 468
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=57.99 E-value=81 Score=23.98 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 78 MDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
.+++..+++.++..=|. --...|-++++.....|.++.++.+|++++..|-.|-...-..++..+.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45666666666654221 1234677888888888888888888888888887777666666666654
No 469
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.95 E-value=62 Score=22.63 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
....+.....+.|+.++|.++|.++...+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33445555666777777777777776543
No 470
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.21 E-value=1.5e+02 Score=26.88 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=14.9
Q ss_pred CcccccCHHHHHHHHHHHhh
Q 027412 1 MLIKECHLDAALKLFGQLTD 20 (223)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~ 20 (223)
+|...|...+|+..|.+...
T Consensus 929 ~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred eeecCCchHHHHHHHHHHhh
Confidence 36677888888888877654
No 471
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.17 E-value=31 Score=18.83 Aligned_cols=29 Identities=3% Similarity=0.016 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCC
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 57 (223)
.++.++..+++..-.+.++..+.+....|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444443
No 472
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.17 E-value=97 Score=27.05 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=34.1
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 55 (223)
...|+++.|++.-..+- +...|..|.....+.|+.+-|+..|++...
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 35677777776654433 566788888888888888888888877653
No 473
>PRK12798 chemotaxis protein; Reviewed
Probab=57.11 E-value=93 Score=24.37 Aligned_cols=195 Identities=12% Similarity=0.042 Sum_probs=84.7
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-cCchhHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS-LNRLDEAVQLFEKLTCV--QLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
.|+-.+|.+.+..+.....++....+-.|+.+-.- ..+..+|+++|+...-. |.-........-+....+.|+.++.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 35555666666555554444455555555443332 33566666666655422 1111122333334444556666665
Q ss_pred HHHHHHHHhcCC-CccH-HHHHHHHHHHHhhCChhHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 82 TMMFSKMLEKGP-KANV-VTYSCLIDGYFKSQNMKSAFDVYEEMCEN-NISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 82 ~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
..+-.+..++-. .|-. ..+..+.....+.++-..-.. +..+... .-..-...|..+.+.-...|+.+-|.-.-++.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 554444433311 1111 122223333333332222111 2222221 11112346666666667777777766666655
Q ss_pred HhCCCCCC---H--HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCch
Q 027412 159 LDNHLLPD---V--VTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 159 ~~~~~~~~---~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
.......+ . ..|..+. -.-..+++++.+.+..+-...+.|..
T Consensus 284 ~~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 284 LKLADPDSADAARARLYRGAA--LVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHhccCCCcchHHHHHHHHHH--ccCcccHHHHHHHHhcCChhhCChhh
Confidence 54321111 1 1222211 12334455666655555554454443
No 474
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.73 E-value=91 Score=24.15 Aligned_cols=170 Identities=8% Similarity=0.028 Sum_probs=72.3
Q ss_pred HHHHHhhCCCCcCHH--HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 027412 14 LFGQLTDRGLEPDII--TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 14 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 91 (223)
+.+.+.+.|..|+.. .....+...+..|+.+.+..+++.-.......+..- ...+...+..|+.+ +++.+.+.
T Consensus 50 ~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~ 124 (413)
T PHA02875 50 AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIAR 124 (413)
T ss_pred HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhC
Confidence 334444555444321 112334455667777766555543211100001111 12334444566654 44444455
Q ss_pred CCCccHHH--HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 027412 92 GPKANVVT--YSCLIDGYFKSQNMKSAFDVYEEMCENNISPN---IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPD 166 (223)
Q Consensus 92 ~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 166 (223)
|..|+... -...+...+..|+.+-+..+++ .|..++ ..-.+.+ ...+..|+.+-+..+ .+.|..++
T Consensus 125 gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~TpL-~~A~~~g~~eiv~~L----l~~ga~~n 195 (413)
T PHA02875 125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLID----HKACLDIEDCCGCTPL-IIAMAKGDIAICKML----LDSGANID 195 (413)
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHH----HhCCCCCC
Confidence 55443221 1123444556677665444443 332222 1222222 233455666544433 45555444
Q ss_pred HHH---HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc
Q 027412 167 VVT---YAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 167 ~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
... ....+...+..|+.+ +.+-+.+.|..++
T Consensus 196 ~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 196 YFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred cCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 321 123334344556554 3444455565554
No 475
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.77 E-value=1.7e+02 Score=26.64 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDV----VTY 170 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 170 (223)
-|...++.+-+.+..+.+.++-..+++. ++++ ..+++.+.+.....|.+-+|.+.+-+- ||. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHH
Confidence 3566677777777777777776666654 1222 235566666666777777776655321 232 234
Q ss_pred HHHHHHHHhcCCcc
Q 027412 171 AILIRGYCKAGRPT 184 (223)
Q Consensus 171 ~~l~~~~~~~g~~~ 184 (223)
..++..+..+|.++
T Consensus 1058 RqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHhccchH
Confidence 45555555555543
No 476
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.58 E-value=97 Score=23.80 Aligned_cols=117 Identities=11% Similarity=0.094 Sum_probs=80.5
Q ss_pred hcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh-------cCC-----C------------
Q 027412 39 SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE-------KGP-----K------------ 94 (223)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~-----~------------ 94 (223)
..++.+....++.+- +-.+.+.-.+...+...|+.+.|.+++++.+- ... .
T Consensus 22 ~~~Dp~~l~~ll~~~-----PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 22 QSHDPNALINLLQKN-----PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred HccCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc
Confidence 344666655554332 33566777788888999998888887766521 111 1
Q ss_pred -ccHHHHHH---HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 027412 95 -ANVVTYSC---LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC-KRGLMEEALYAFHCALD 160 (223)
Q Consensus 95 -~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 160 (223)
-|...|.+ .+..+.+.|.+..|.++-+-+...+..-|+.....+|..|+ +.++++--+++.+....
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 13334444 46778899999999999999999874447777777788776 57888888888887654
No 477
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.23 E-value=1.5e+02 Score=25.99 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=12.6
Q ss_pred cccCHHHHHHHHHHHhh
Q 027412 4 KECHLDAALKLFGQLTD 20 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~ 20 (223)
..|++.+|++.|+.++-
T Consensus 1003 t~gKf~eAie~Frsii~ 1019 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSIIY 1019 (1202)
T ss_pred ccCcHHHHHHHHHHHHh
Confidence 56788888888877653
No 478
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.09 E-value=1.2e+02 Score=24.67 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=46.1
Q ss_pred HCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 027412 125 ENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL-------------LPDVVTYAILIRGYCKAGRPTEAMQLYD 191 (223)
Q Consensus 125 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 191 (223)
+.|+..+......++... .|+...|..+++++...+- .++......++.++. .|+.+.+..+++
T Consensus 193 ~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~~ 269 (509)
T PRK14958 193 EENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCVT 269 (509)
T ss_pred HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 446666666655554432 5777788777776554321 123334444555544 378888888888
Q ss_pred HHHHCCCCCch
Q 027412 192 SMLRNGIMPDG 202 (223)
Q Consensus 192 ~~~~~~~~p~~ 202 (223)
++...|..|..
T Consensus 270 ~l~~~g~~~~~ 280 (509)
T PRK14958 270 RLVEQGVDFSN 280 (509)
T ss_pred HHHHcCCCHHH
Confidence 88888877653
No 479
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.87 E-value=96 Score=23.57 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEK---GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILID 140 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 140 (223)
.|.-=++-|.+.+++..|...|.+-++. ++..+...|+.-..+-...|++..++.=-...+..+ +-....|.-=..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhH
Confidence 3444555666777777777777766654 233345667766666667777777777666666543 222334444444
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 027412 141 GLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~ 158 (223)
++....+++.|..+.++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 555555655555555443
No 480
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.73 E-value=93 Score=23.35 Aligned_cols=72 Identities=11% Similarity=0.214 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH----------hhCChhHH
Q 027412 47 VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF----------KSQNMKSA 116 (223)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 116 (223)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+... ..-|..|+..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467888888889999888888888888888899999999998753 333555555554 35888888
Q ss_pred HHHHHHH
Q 027412 117 FDVYEEM 123 (223)
Q Consensus 117 ~~~~~~~ 123 (223)
+++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 8888654
No 481
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.72 E-value=60 Score=21.14 Aligned_cols=83 Identities=8% Similarity=0.157 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHCCCCCChhHHHHH
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLEKGP-----KANVVTYSCLIDGYFKSQN-MKSAFDVYEEMCENNISPNIVSYSIL 138 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 138 (223)
.+.++.-....+++...+.+++.+....+ ..+...|.+++.+.....- ---+..+|..+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45566655666677777777776643211 1244567777777755544 33456667777766677777777777
Q ss_pred HHHHHhcCC
Q 027412 139 IDGLCKRGL 147 (223)
Q Consensus 139 ~~~~~~~~~ 147 (223)
+.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 777666533
No 482
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.66 E-value=1.4e+02 Score=25.23 Aligned_cols=76 Identities=7% Similarity=0.027 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 027412 66 TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR 145 (223)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (223)
...+..+.+.+++.....++.. ++.+...-.....+....|+.++|......+-..| ...+...+.++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 3344455566667666552211 23355555667778888888877777777776665 44556667777666655
Q ss_pred CC
Q 027412 146 GL 147 (223)
Q Consensus 146 ~~ 147 (223)
|.
T Consensus 177 g~ 178 (644)
T PRK11619 177 GK 178 (644)
T ss_pred CC
Confidence 43
No 483
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=53.25 E-value=1.8e+02 Score=26.57 Aligned_cols=143 Identities=13% Similarity=0.040 Sum_probs=90.7
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHh-----CC--CCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 027412 14 LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-----VQ--LKPNSITFTILIDAFCKEGRMDDATMMFS 86 (223)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (223)
++......-.+.....|..+...+.+.++.++|+.+-.+..- .| ..-+...|..+.......++...|...+.
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLN 1039 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHH
Confidence 666433222244567788899999999999999877655421 12 22244566667666667778888888777
Q ss_pred HHHhc-----C--CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC----C---CCChhHHHHHHHHHHhcCCHHHHH
Q 027412 87 KMLEK-----G--PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN----I---SPNIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 87 ~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
+.+.. + .+|...+++.+-..+...++++.|.++++.+.... . -.+..++..+.+.+...+++..|.
T Consensus 1040 ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1040 RALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred HHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH
Confidence 66543 2 23344555666566666789999999999887531 1 123456667777777677766655
Q ss_pred HHHH
Q 027412 153 YAFH 156 (223)
Q Consensus 153 ~~~~ 156 (223)
...+
T Consensus 1120 ~~ek 1123 (1236)
T KOG1839|consen 1120 EHEK 1123 (1236)
T ss_pred HHHh
Confidence 4443
No 484
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=53.23 E-value=1.3e+02 Score=24.78 Aligned_cols=170 Identities=15% Similarity=-0.003 Sum_probs=100.6
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCChhHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.|+++.+.-+|++..-. ...-...|-..+.-....|+.+-+..++....+...+ |....+.+. ..-..|++..|
T Consensus 309 ~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A 385 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDA 385 (577)
T ss_pred hcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHH
Confidence 457777777777776532 1112345666666666668888888777766554433 223333222 22346899999
Q ss_pred HHHHHHHHhcCCCccH-HHHHHHHHHHHhhCChhHHHH---HHHHHHHCCCCCChhHHHHHHHH-----HHhcCCHHHHH
Q 027412 82 TMMFSKMLEKGPKANV-VTYSCLIDGYFKSQNMKSAFD---VYEEMCENNISPNIVSYSILIDG-----LCKRGLMEEAL 152 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~ 152 (223)
..+++.+.+.- |+. ..-..-+..-.+.|..+.+.. ++..... | ..+..+...+.-- +.-.++.+.|.
T Consensus 386 ~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~ 461 (577)
T KOG1258|consen 386 KVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLAR 461 (577)
T ss_pred HHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999998875 332 222223445566777777773 3332222 1 2233333332222 33467899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 027412 153 YAFHCALDNHLLPDVVTYAILIRGYCKAG 181 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 181 (223)
.++.++.+.-+ ++...|..++......+
T Consensus 462 ~~l~~~~~~~~-~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 462 IILLEANDILP-DCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhhhcCC-ccHHHHHHHHHHHHhCC
Confidence 99999887644 67777777777766554
No 485
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=53.06 E-value=1.4e+02 Score=25.36 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=52.5
Q ss_pred hHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CCHHHHHHHHHHHHh
Q 027412 114 KSAFDVYEEMC-ENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH---LL----------PDVVTYAILIRGYCK 179 (223)
Q Consensus 114 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~----------~~~~~~~~l~~~~~~ 179 (223)
++....+.... ..|+..+......++... .|++..++.+++++...+ +. .+......++.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 44444554443 346666666666665544 578888888887665432 11 123334445555444
Q ss_pred cCCcchHHHHHHHHHHCCCCCch
Q 027412 180 AGRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 180 ~g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
++...++.+++++...|+.+..
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHH
Confidence 8888899999999888876653
No 486
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=52.72 E-value=50 Score=21.47 Aligned_cols=33 Identities=6% Similarity=-0.081 Sum_probs=16.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 027412 139 IDGLCKRGLMEEALYAFHCALDNHLLPDVVTYA 171 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 171 (223)
+..+...+....+.++++.+.+.|+..+..|.+
T Consensus 7 i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIs 39 (146)
T TIGR01529 7 IKEIITEEKISTQEELVALLKAEGIEVTQATVS 39 (146)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHH
Confidence 334444455555555555555555544444433
No 487
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.52 E-value=1.1e+02 Score=23.65 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=30.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCCcchHHHHHHHHHHCC
Q 027412 143 CKRGLMEEALYAFHCALDNHLLPDVVTYAILIRG----YCKAGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~ 197 (223)
.+-|+..-+......+.++.+..=..+|..+--. .++.+..++|.+..-+|.+.|
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3445555555555555554443334455444222 345577777888777777664
No 488
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=52.49 E-value=76 Score=21.97 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 57 (223)
....+.++..+...|+++.|.+.|.-+....
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 3456677888888888888888888887653
No 489
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=52.32 E-value=54 Score=20.58 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=36.2
Q ss_pred ChhHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhhCChhHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 027412 77 RMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-ENNISPNIVSYSILIDGLCKRGLMEEALY 153 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 153 (223)
++.+|+..+++..... ..++......++..+--. ++.++++++... ..|+. +...-..+++...+.|-++....
T Consensus 5 ~~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~t--~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~ 80 (124)
T PF08780_consen 5 NFKKALSRLEEALEKYEDPLSELERDGVIQRFEFT--FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEI 80 (124)
T ss_dssp HHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHH
Confidence 4566777777766651 222444555555554443 556666666544 33542 22222444444444444433333
No 490
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=52.11 E-value=91 Score=22.77 Aligned_cols=60 Identities=13% Similarity=0.037 Sum_probs=48.0
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 101 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
+.+=..+.+.++++.|....+.....+ +.|+.-+.--..+|.+.|....|++-+....+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~-P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLN-PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhC-CCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344456788899999999999988875 677777777788899999999999888886654
No 491
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.76 E-value=50 Score=23.56 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=46.4
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 57 (223)
..+.++.+.|.+++.+....- +-....|-.+...--+.|+++.|.+-|++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 467889999999999988763 3357788888888899999999999999998775
No 492
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=51.72 E-value=1.4e+02 Score=24.91 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHh---cCChhHHHHHHHHHHh
Q 027412 63 ITFTILIDAFCK---EGRMDDATMMFSKMLE 90 (223)
Q Consensus 63 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 90 (223)
.-+..|+..|.+ ..++.+|.+++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345667777765 3567778777766554
No 493
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=50.97 E-value=43 Score=18.65 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=17.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 027412 145 RGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA 180 (223)
Q Consensus 145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
.++.+.+.+++++..+.|..|.......+.-+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 445556666666665555544443333344443333
No 494
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.82 E-value=1.4e+02 Score=24.62 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCChhHHHHH-------HHHHHhcCCCc-------------cHHHHHH---HHHHHHhhCChhHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMM-------FSKMLEKGPKA-------------NVVTYSC---LIDGYFKSQNMKSAFDVY 120 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~-------~~~~~~~~~~~-------------~~~~~~~---l~~~~~~~~~~~~a~~~~ 120 (223)
+.-.+...+...|+.+.+..+ |++.......| |...|.+ .+..+.+.|-+..|+++-
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 344455667777886655544 44444332222 2333433 356677889999999999
Q ss_pred HHHHHCCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCC---cchHHHHHHHH
Q 027412 121 EEMCENNISPNIVSYSILIDGLC-KRGLMEEALYAFHCALDN---HLLPDVVTYAILIRGYCKAGR---PTEAMQLYDSM 193 (223)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 193 (223)
+-+...+..-|+.....+|..|+ +..++.-.+++++..... ..-||..-=.+++..|.+... -+.|...+.++
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qA 445 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQA 445 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHH
Confidence 99988764447777888888876 567888888888776432 223554333445555555544 23444444444
Q ss_pred H
Q 027412 194 L 194 (223)
Q Consensus 194 ~ 194 (223)
.
T Consensus 446 l 446 (665)
T KOG2422|consen 446 L 446 (665)
T ss_pred H
Confidence 4
No 495
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=50.58 E-value=82 Score=21.81 Aligned_cols=171 Identities=14% Similarity=0.120 Sum_probs=90.2
Q ss_pred CCCcCHHHHHHHHHHHHhcC----chhHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 027412 22 GLEPDIITYNTIICGYCSLN----RLDEAVQLFEKLTCVQLKPNS----ITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (223)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 93 (223)
|.-++...++.++..+.+.. +.+-+..+=.+....++.++- .....-+..|-+.|||.+--.+|-.....--
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gce 82 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGCE 82 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhcC
Confidence 45566677776666555433 334444444444444444322 2223334456667777777777655443211
Q ss_pred Ccc-HHH-HHHHHHHHHhhC--ChhHHHHHHHHHHHCCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 94 KAN-VVT-YSCLIDGYFKSQ--NMKSAFDVYEEMCENNISPNI-------VSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 94 ~~~-~~~-~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
.++ ... ...+..++.+.- ++.--.-.|.+....+.+.|. .+=-+++..|-+.-+|.+..++++.+.+..
T Consensus 83 ~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~ 162 (233)
T PF14669_consen 83 KFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHELQ 162 (233)
T ss_pred CHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 111 111122222111 111112223333322222222 122456677888899999999999887644
Q ss_pred CC--------------CCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 027412 163 LL--------------PDVVTYAILIRGYCKAGRPTEAMQLYDS 192 (223)
Q Consensus 163 ~~--------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 192 (223)
+. +--...|..+..+.+.|..+.|..++++
T Consensus 163 i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 163 IHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 32 2224668888899999999999999874
No 496
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.56 E-value=1.3e+02 Score=24.21 Aligned_cols=84 Identities=12% Similarity=0.158 Sum_probs=49.4
Q ss_pred HHHHHHHH-HCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhcC
Q 027412 117 FDVYEEMC-ENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN--------------HLLPDVVTYAILIRGYCKAG 181 (223)
Q Consensus 117 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g 181 (223)
...++... ..|+..+......++ -...|+...|+.+++++... |. .+...+..++.+....+
T Consensus 186 ~~~L~~i~~~Egi~~e~eAL~~Ia--~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~-~~~~~~~~l~~si~~~d 262 (484)
T PRK14956 186 QDYSEKLCKIENVQYDQEGLFWIA--KKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGY-HGIEFLTSFIKSLIDPD 262 (484)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH--HHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCC-CCHHHHHHHHHHHHcCC
Confidence 33444332 335555555554443 23356777777777664421 11 24445566666655555
Q ss_pred CcchHHHHHHHHHHCCCCCchh
Q 027412 182 RPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
....|+.++.++.+.|..|...
T Consensus 263 ~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 263 NHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred cHHHHHHHHHHHHHcCCCHHHH
Confidence 5668999999999988877754
No 497
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=49.86 E-value=54 Score=21.18 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=20.4
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCchhhHHHHhh
Q 027412 178 CKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 210 (223)
Q Consensus 178 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 210 (223)
.+.|-+.+...++++|.+.|+..+...|...+.
T Consensus 120 k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 120 KSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 444666666666666666666666666665544
No 498
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=49.65 E-value=50 Score=19.69 Aligned_cols=39 Identities=8% Similarity=-0.035 Sum_probs=17.0
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 027412 111 QNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEE 150 (223)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 150 (223)
.+.+.+..+|..+.+.|. .+...+..+...+...++.+-
T Consensus 38 e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DL 76 (97)
T cd08790 38 GLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDL 76 (97)
T ss_pred cCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHH
Confidence 344455555555555542 222232334444444444443
No 499
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=49.40 E-value=53 Score=25.99 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
+++-.++++.+.+.|-. | ....-+.+|.+.+++++|...+++-.+
T Consensus 70 ~~e~i~lL~~l~~~g~a-d--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 70 LDEHIELLRTLQEEGGA-D--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred HHHHHHHHHHHHHccCC-C--ccceeeecccccccHHHHHHHHHhhhh
Confidence 34445555555444321 2 223335556666666666655555444
No 500
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=49.37 E-value=52 Score=19.19 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 153 YAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
++|+-....|+..|+..|..++..+.-.=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
Done!