Query 027412
Match_columns 223
No_of_seqs 518 out of 1279
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 15:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.7E-39 9.4E-44 246.0 23.3 206 10-215 8-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.2E-36 4.1E-41 231.5 22.8 180 1-180 35-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 7.9E-25 2.7E-29 171.0 22.3 214 3-221 316-535 (597)
4 2xpi_A Anaphase-promoting comp 99.9 2.6E-24 8.9E-29 168.0 23.5 215 2-221 349-569 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.9E-21 2E-25 141.8 25.0 210 3-219 146-356 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6.1E-20 2.1E-24 136.4 25.9 205 2-213 179-384 (388)
7 2pl2_A Hypothetical conserved 99.9 1.9E-20 6.6E-25 128.4 19.8 186 3-194 16-212 (217)
8 4eqf_A PEX5-related protein; a 99.9 9.2E-21 3.1E-25 139.7 19.2 212 2-220 75-299 (365)
9 3spa_A Mtrpol, DNA-directed RN 99.9 3.5E-22 1.2E-26 158.5 11.1 150 62-216 127-286 (1134)
10 3spa_A Mtrpol, DNA-directed RN 99.9 7.7E-22 2.6E-26 156.6 12.6 120 96-215 126-249 (1134)
11 1fch_A Peroxisomal targeting s 99.9 1.9E-19 6.5E-24 132.6 24.1 214 2-221 74-349 (368)
12 2q7f_A YRRB protein; TPR, prot 99.9 1.1E-19 3.8E-24 126.3 21.2 202 2-210 33-234 (243)
13 2y4t_A DNAJ homolog subfamily 99.9 1E-19 3.5E-24 137.5 22.2 197 2-205 36-247 (450)
14 2pl2_A Hypothetical conserved 99.9 1.8E-19 6.1E-24 123.6 21.4 191 24-221 2-204 (217)
15 2y4t_A DNAJ homolog subfamily 99.9 1.2E-19 4.1E-24 137.1 22.5 189 2-195 70-285 (450)
16 2ho1_A Type 4 fimbrial biogene 99.9 3.7E-19 1.3E-23 124.5 23.3 201 2-209 47-249 (252)
17 2vq2_A PILW, putative fimbrial 99.9 1.1E-18 3.7E-23 119.8 23.2 203 2-209 18-222 (225)
18 3uq3_A Heat shock protein STI1 99.9 2.3E-19 7.9E-24 125.7 20.0 205 2-210 15-254 (258)
19 3hym_B Cell division cycle pro 99.9 4.4E-19 1.5E-23 128.6 21.8 214 2-220 32-254 (330)
20 4eqf_A PEX5-related protein; a 99.9 4.6E-20 1.6E-24 135.9 16.3 212 2-218 109-343 (365)
21 3hym_B Cell division cycle pro 99.8 6.1E-19 2.1E-23 127.8 21.4 188 4-195 68-264 (330)
22 3cv0_A Peroxisome targeting si 99.8 7.8E-19 2.7E-23 127.1 19.8 213 2-220 31-258 (327)
23 3vtx_A MAMA; tetratricopeptide 99.8 4.2E-18 1.4E-22 113.6 21.9 174 26-205 4-177 (184)
24 3ieg_A DNAJ homolog subfamily 99.8 4.4E-18 1.5E-22 124.6 23.3 194 2-202 13-221 (359)
25 3cv0_A Peroxisome targeting si 99.8 6.5E-19 2.2E-23 127.5 17.9 214 2-220 65-304 (327)
26 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.7E-22 119.7 23.6 200 3-217 45-249 (291)
27 3mkr_A Coatomer subunit epsilo 99.8 8.8E-18 3E-22 120.1 19.4 194 2-206 75-272 (291)
28 3ieg_A DNAJ homolog subfamily 99.8 1.3E-16 4.3E-21 116.8 26.0 203 2-211 130-349 (359)
29 3u4t_A TPR repeat-containing p 99.8 1.7E-17 5.8E-22 117.3 20.5 214 2-219 13-238 (272)
30 2h6f_A Protein farnesyltransfe 99.8 2.3E-17 7.7E-22 121.9 21.8 207 2-216 107-323 (382)
31 1fch_A Peroxisomal targeting s 99.8 2.9E-17 1E-21 120.9 21.2 213 3-220 36-303 (368)
32 2gw1_A Mitochondrial precursor 99.8 3.4E-17 1.2E-21 125.5 21.7 213 2-220 16-322 (514)
33 2vq2_A PILW, putative fimbrial 99.8 6.3E-17 2.1E-21 111.0 21.0 190 25-217 6-197 (225)
34 2ho1_A Type 4 fimbrial biogene 99.8 9.1E-17 3.1E-21 112.3 21.6 189 27-219 37-226 (252)
35 2gw1_A Mitochondrial precursor 99.8 1.3E-17 4.5E-22 127.8 18.1 211 2-219 247-466 (514)
36 2q7f_A YRRB protein; TPR, prot 99.8 3.4E-17 1.2E-21 113.7 18.6 192 25-221 21-212 (243)
37 1ouv_A Conserved hypothetical 99.8 1.8E-15 6.1E-20 107.1 27.3 195 2-214 16-230 (273)
38 4gyw_A UDP-N-acetylglucosamine 99.8 1.3E-16 4.4E-21 126.5 21.6 166 26-195 8-173 (723)
39 3vtx_A MAMA; tetratricopeptide 99.8 2.1E-16 7.1E-21 105.4 19.6 157 2-162 15-171 (184)
40 3uq3_A Heat shock protein STI1 99.8 1.3E-16 4.3E-21 111.7 18.9 190 26-220 4-225 (258)
41 4i17_A Hypothetical protein; T 99.8 3.5E-16 1.2E-20 107.8 20.8 181 26-211 6-222 (228)
42 1xnf_A Lipoprotein NLPI; TPR, 99.8 7E-17 2.4E-21 114.1 17.7 193 3-201 16-247 (275)
43 3as5_A MAMA; tetratricopeptide 99.8 1.6E-16 5.4E-21 105.6 18.3 166 27-196 8-173 (186)
44 3fp2_A TPR repeat-containing p 99.8 1.4E-16 4.9E-21 122.8 20.5 209 3-218 254-478 (537)
45 3u4t_A TPR repeat-containing p 99.8 1.1E-16 3.8E-21 113.1 17.3 206 2-212 47-264 (272)
46 4abn_A Tetratricopeptide repea 99.8 5E-17 1.7E-21 123.8 16.4 200 6-212 82-302 (474)
47 4abn_A Tetratricopeptide repea 99.8 1.7E-16 5.7E-21 120.9 18.8 186 2-193 112-318 (474)
48 2h6f_A Protein farnesyltransfe 99.7 7.4E-16 2.5E-20 113.9 20.8 203 2-212 141-363 (382)
49 2ond_A Cleavage stimulation fa 99.7 2.8E-15 9.7E-20 108.0 23.2 203 9-216 33-255 (308)
50 3fp2_A TPR repeat-containing p 99.7 8.7E-16 3E-20 118.4 20.8 185 6-196 216-407 (537)
51 2ond_A Cleavage stimulation fa 99.7 2.8E-15 9.6E-20 108.1 22.0 185 8-196 80-270 (308)
52 3nf1_A KLC 1, kinesin light ch 99.7 2.6E-16 8.8E-21 113.1 16.5 194 2-195 37-306 (311)
53 1xnf_A Lipoprotein NLPI; TPR, 99.7 1E-15 3.4E-20 108.2 19.1 181 2-190 53-269 (275)
54 1ouv_A Conserved hypothetical 99.7 1.3E-14 4.6E-19 102.6 24.9 178 5-197 55-252 (273)
55 3edt_B KLC 2, kinesin light ch 99.7 4.6E-16 1.6E-20 110.2 16.0 192 4-195 13-280 (283)
56 4i17_A Hypothetical protein; T 99.7 6.1E-15 2.1E-19 101.6 19.6 168 2-173 17-220 (228)
57 3as5_A MAMA; tetratricopeptide 99.7 4.5E-15 1.5E-19 98.5 18.3 157 2-162 18-174 (186)
58 4gyw_A UDP-N-acetylglucosamine 99.7 2.9E-15 9.9E-20 118.8 18.4 155 2-160 19-173 (723)
59 1b89_A Protein (clathrin heavy 99.7 8.8E-18 3E-22 124.0 2.5 137 28-188 62-198 (449)
60 1b89_A Protein (clathrin heavy 99.7 6.1E-17 2.1E-21 119.6 6.2 180 4-219 15-194 (449)
61 3urz_A Uncharacterized protein 99.7 2.9E-14 1E-18 96.9 17.9 174 29-209 6-197 (208)
62 3nf1_A KLC 1, kinesin light ch 99.6 7.4E-15 2.5E-19 105.4 14.6 170 26-195 26-223 (311)
63 2pzi_A Probable serine/threoni 99.6 1.2E-14 4.2E-19 115.2 16.9 173 4-182 403-583 (681)
64 3qky_A Outer membrane assembly 99.6 1.9E-13 6.4E-18 96.1 20.1 174 25-202 13-228 (261)
65 2fo7_A Synthetic consensus TPR 99.6 1.7E-13 5.7E-18 86.0 16.6 128 65-195 4-131 (136)
66 4a1s_A PINS, partner of inscut 99.6 5.6E-15 1.9E-19 110.4 11.2 218 2-220 58-321 (411)
67 4ga2_A E3 SUMO-protein ligase 99.6 3.8E-14 1.3E-18 91.3 13.3 140 3-146 8-148 (150)
68 2fo7_A Synthetic consensus TPR 99.6 3.1E-13 1.1E-17 84.8 17.2 131 29-162 3-133 (136)
69 3urz_A Uncharacterized protein 99.6 1.7E-13 5.7E-18 93.2 16.4 166 2-174 14-197 (208)
70 3ulq_A Response regulator aspa 99.6 5.1E-14 1.7E-18 104.4 14.9 215 2-219 113-356 (383)
71 1qqe_A Vesicular transport pro 99.6 8.4E-14 2.9E-18 99.6 15.2 200 3-204 48-275 (292)
72 3qky_A Outer membrane assembly 99.6 2.1E-13 7.1E-18 95.9 17.0 179 2-183 25-248 (261)
73 4ga2_A E3 SUMO-protein ligase 99.6 2E-14 7E-19 92.6 10.7 142 36-181 6-148 (150)
74 2ooe_A Cleavage stimulation fa 99.6 2.2E-12 7.4E-17 99.7 23.6 205 9-217 255-478 (530)
75 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.6E-12 5.6E-17 89.3 20.2 170 26-196 3-213 (225)
76 3qou_A Protein YBBN; thioredox 99.6 5.7E-13 1.9E-17 95.0 18.2 169 24-195 114-283 (287)
77 2r5s_A Uncharacterized protein 99.6 2.8E-13 9.7E-18 89.6 15.3 163 29-195 8-172 (176)
78 2vsy_A XCC0866; transferase, g 99.6 3.1E-13 1E-17 105.3 17.8 155 5-163 2-159 (568)
79 2ooe_A Cleavage stimulation fa 99.6 1.7E-12 5.8E-17 100.3 21.8 189 5-196 292-492 (530)
80 3rjv_A Putative SEL1 repeat pr 99.6 1.9E-12 6.6E-17 88.2 19.4 179 9-199 3-200 (212)
81 3ro2_A PINS homolog, G-protein 99.6 5.3E-14 1.8E-18 101.8 12.0 217 2-219 15-280 (338)
82 3sf4_A G-protein-signaling mod 99.6 5.1E-14 1.8E-18 104.7 11.9 217 2-219 19-284 (406)
83 2vsy_A XCC0866; transferase, g 99.5 5.6E-13 1.9E-17 103.8 17.6 153 40-196 2-157 (568)
84 1qqe_A Vesicular transport pro 99.5 2.5E-13 8.5E-18 97.1 14.3 171 29-201 39-231 (292)
85 4a1s_A PINS, partner of inscut 99.5 1.6E-14 5.4E-19 107.9 8.1 219 2-220 96-361 (411)
86 3mv2_B Coatomer subunit epsilo 99.5 5.7E-12 1.9E-16 89.5 20.4 186 11-203 85-287 (310)
87 4g1t_A Interferon-induced prot 99.5 4.6E-12 1.6E-16 96.3 21.5 197 3-204 62-282 (472)
88 2xm6_A Protein corresponding t 99.5 3.9E-11 1.3E-15 91.9 25.8 177 5-196 56-252 (490)
89 2pzi_A Probable serine/threoni 99.5 3.9E-13 1.3E-17 106.7 15.1 172 38-216 402-582 (681)
90 3edt_B KLC 2, kinesin light ch 99.5 2.6E-13 9E-18 95.9 12.7 159 38-196 12-198 (283)
91 2xm6_A Protein corresponding t 99.5 4.4E-11 1.5E-15 91.5 25.7 177 5-196 92-288 (490)
92 3sf4_A G-protein-signaling mod 99.5 1.5E-13 5.1E-18 102.2 11.7 193 3-195 98-335 (406)
93 2yhc_A BAMD, UPF0169 lipoprote 99.5 4.5E-12 1.5E-16 87.2 18.0 160 2-163 14-215 (225)
94 3q15_A PSP28, response regulat 99.5 2.1E-12 7.3E-17 95.6 17.5 213 3-219 112-353 (378)
95 3ulq_A Response regulator aspa 99.5 6.7E-13 2.3E-17 98.4 14.7 192 2-196 153-368 (383)
96 2r5s_A Uncharacterized protein 99.5 6.8E-13 2.3E-17 87.7 12.8 155 2-160 16-172 (176)
97 3ro2_A PINS homolog, G-protein 99.5 1.8E-13 6.1E-18 99.0 10.2 219 2-220 53-321 (338)
98 4g1t_A Interferon-induced prot 99.5 3.5E-12 1.2E-16 96.9 17.5 187 5-196 151-363 (472)
99 3qou_A Protein YBBN; thioredox 99.5 3E-12 1E-16 91.3 15.2 154 2-160 127-283 (287)
100 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2.3E-11 7.8E-16 82.6 18.7 131 28-164 7-153 (213)
101 3q15_A PSP28, response regulat 99.5 4.8E-12 1.7E-16 93.7 16.4 190 2-195 151-364 (378)
102 1hh8_A P67PHOX, NCF-2, neutrop 99.4 5.9E-11 2E-15 80.6 18.9 145 63-212 7-166 (213)
103 1hz4_A MALT regulatory protein 99.4 4.5E-11 1.5E-15 88.2 19.4 216 3-218 25-269 (373)
104 2ifu_A Gamma-SNAP; membrane fu 99.4 6E-12 2E-16 90.6 14.2 190 4-194 3-222 (307)
105 4gco_A Protein STI-1; structur 99.4 2.3E-11 8E-16 75.8 14.7 97 64-162 15-111 (126)
106 4gco_A Protein STI-1; structur 99.4 8.1E-12 2.8E-16 77.8 12.3 112 97-212 13-124 (126)
107 1hz4_A MALT regulatory protein 99.4 3.5E-11 1.2E-15 88.8 16.8 217 2-218 63-309 (373)
108 1a17_A Serine/threonine protei 99.4 5.1E-11 1.7E-15 77.5 15.8 128 64-194 15-144 (166)
109 3u3w_A Transcriptional activat 99.4 1.4E-10 4.9E-15 82.8 18.7 164 32-195 80-265 (293)
110 1a17_A Serine/threonine protei 99.4 9.9E-11 3.4E-15 76.1 16.3 130 27-159 13-144 (166)
111 3gyz_A Chaperone protein IPGC; 99.4 3.6E-12 1.2E-16 81.9 9.0 100 61-162 35-134 (151)
112 2e2e_A Formate-dependent nitri 99.4 2.2E-11 7.6E-16 80.4 13.1 123 38-163 21-146 (177)
113 3rjv_A Putative SEL1 repeat pr 99.4 1.6E-10 5.4E-15 78.7 17.5 153 2-163 28-199 (212)
114 1na0_A Designed protein CTPR3; 99.4 1.3E-10 4.5E-15 71.6 15.6 97 63-161 10-106 (125)
115 3gyz_A Chaperone protein IPGC; 99.4 2E-12 6.7E-17 83.1 7.2 104 96-203 35-138 (151)
116 2vyi_A SGTA protein; chaperone 99.4 1.3E-10 4.5E-15 72.2 15.6 119 62-183 12-130 (131)
117 2e2e_A Formate-dependent nitri 99.4 2.8E-11 9.7E-16 79.9 12.8 123 2-127 20-145 (177)
118 3gw4_A Uncharacterized protein 99.4 5.7E-11 2E-15 79.9 14.6 158 2-160 2-175 (203)
119 2vgx_A Chaperone SYCD; alterna 99.4 7.9E-12 2.7E-16 80.2 9.7 110 49-161 9-118 (148)
120 2lni_A Stress-induced-phosphop 99.3 1.1E-10 3.7E-15 72.9 14.5 96 63-160 17-112 (133)
121 2qfc_A PLCR protein; TPR, HTH, 99.3 8.3E-10 2.8E-14 78.8 20.8 166 30-195 78-265 (293)
122 2lni_A Stress-induced-phosphop 99.3 1.5E-10 5.1E-15 72.3 15.0 120 24-146 13-132 (133)
123 4f3v_A ESX-1 secretion system 99.3 1.4E-10 4.8E-15 81.3 16.0 199 4-208 18-247 (282)
124 1xi4_A Clathrin heavy chain; a 99.3 3E-10 1E-14 94.2 19.6 143 27-193 1105-1247(1630)
125 1na0_A Designed protein CTPR3; 99.3 2.5E-10 8.4E-15 70.3 15.3 116 27-145 9-124 (125)
126 1p5q_A FKBP52, FK506-binding p 99.3 1.4E-10 4.7E-15 84.6 16.1 130 27-158 147-291 (336)
127 3dra_A Protein farnesyltransfe 99.3 9.4E-10 3.2E-14 78.6 19.9 185 7-195 84-286 (306)
128 2vgx_A Chaperone SYCD; alterna 99.3 3.6E-11 1.2E-15 77.1 11.5 110 14-126 9-118 (148)
129 3u3w_A Transcriptional activat 99.3 1.6E-10 5.4E-15 82.6 15.8 158 3-160 86-265 (293)
130 2vyi_A SGTA protein; chaperone 99.3 1.3E-10 4.4E-15 72.3 13.5 120 26-148 11-130 (131)
131 1p5q_A FKBP52, FK506-binding p 99.3 1.4E-10 4.9E-15 84.5 15.6 152 40-194 126-292 (336)
132 3gw4_A Uncharacterized protein 99.3 1.1E-10 3.9E-15 78.4 14.1 158 38-196 3-176 (203)
133 2qfc_A PLCR protein; TPR, HTH, 99.3 7.4E-10 2.5E-14 79.1 18.4 158 2-159 85-264 (293)
134 3mv2_B Coatomer subunit epsilo 99.3 1.3E-09 4.4E-14 77.5 19.2 167 46-217 85-270 (310)
135 1xi4_A Clathrin heavy chain; a 99.3 5.1E-10 1.8E-14 92.9 18.8 188 2-214 1115-1326(1630)
136 2ifu_A Gamma-SNAP; membrane fu 99.3 6.5E-11 2.2E-15 85.2 12.4 184 2-188 46-253 (307)
137 3dra_A Protein farnesyltransfe 99.3 2E-09 6.8E-14 77.0 19.8 206 8-218 49-274 (306)
138 2fbn_A 70 kDa peptidylprolyl i 99.3 1.1E-11 3.8E-16 83.4 7.6 158 35-195 12-185 (198)
139 3e4b_A ALGK; tetratricopeptide 99.3 2.5E-09 8.5E-14 81.1 21.1 173 8-197 161-352 (452)
140 3upv_A Heat shock protein STI1 99.3 4.5E-10 1.6E-14 69.7 14.2 95 64-160 6-100 (126)
141 2c2l_A CHIP, carboxy terminus 99.3 2.6E-11 8.9E-16 86.2 9.3 185 2-196 14-199 (281)
142 2xcb_A PCRH, regulatory protei 99.3 5.3E-11 1.8E-15 75.7 9.6 99 61-161 17-115 (142)
143 1elw_A TPR1-domain of HOP; HOP 99.3 1.6E-09 5.5E-14 65.9 16.0 98 63-162 5-102 (118)
144 2xcb_A PCRH, regulatory protei 99.2 1.4E-10 4.8E-15 73.7 11.2 110 14-126 6-115 (142)
145 2fbn_A 70 kDa peptidylprolyl i 99.2 3.3E-11 1.1E-15 81.1 8.5 133 26-160 37-185 (198)
146 3upv_A Heat shock protein STI1 99.2 6.7E-10 2.3E-14 68.9 13.3 113 96-212 3-121 (126)
147 4e6h_A MRNA 3'-END-processing 99.2 1.9E-09 6.4E-14 85.1 18.2 205 4-212 355-584 (679)
148 1elw_A TPR1-domain of HOP; HOP 99.2 2.4E-09 8.1E-14 65.2 15.1 112 26-140 3-114 (118)
149 4gcn_A Protein STI-1; structur 99.2 9.2E-10 3.1E-14 68.5 12.9 96 64-160 10-111 (127)
150 3e4b_A ALGK; tetratricopeptide 99.2 1.5E-09 5.3E-14 82.2 16.2 122 64-194 178-314 (452)
151 4gcn_A Protein STI-1; structur 99.2 6.7E-10 2.3E-14 69.2 11.9 109 97-208 8-122 (127)
152 3sz7_A HSC70 cochaperone (SGT) 99.2 2E-09 6.8E-14 70.0 13.9 96 63-160 12-107 (164)
153 3sz7_A HSC70 cochaperone (SGT) 99.2 1.8E-09 6E-14 70.3 13.5 101 25-127 9-109 (164)
154 1elr_A TPR2A-domain of HOP; HO 99.2 1.4E-09 4.9E-14 67.5 12.3 96 64-161 6-108 (131)
155 3q49_B STIP1 homology and U bo 99.2 2.3E-09 7.7E-14 67.4 13.2 98 26-125 8-105 (137)
156 2dba_A Smooth muscle cell asso 99.1 7E-09 2.4E-13 65.9 15.4 98 26-126 27-128 (148)
157 3q49_B STIP1 homology and U bo 99.1 3.8E-09 1.3E-13 66.3 14.0 100 60-161 7-106 (137)
158 2kck_A TPR repeat; tetratricop 99.1 1.1E-09 3.7E-14 66.1 11.0 93 101-195 10-105 (112)
159 4b4t_Q 26S proteasome regulato 99.1 1E-08 3.5E-13 77.0 18.4 194 2-195 14-244 (434)
160 2dba_A Smooth muscle cell asso 99.1 7.5E-09 2.6E-13 65.7 15.2 110 61-173 27-139 (148)
161 1hxi_A PEX5, peroxisome target 99.1 1.8E-09 6.1E-14 66.6 11.4 91 68-160 23-113 (121)
162 2c2l_A CHIP, carboxy terminus 99.1 7.8E-10 2.7E-14 78.6 10.9 146 2-160 48-198 (281)
163 2kck_A TPR repeat; tetratricop 99.1 2.9E-09 9.8E-14 64.2 11.6 101 61-163 5-108 (112)
164 1wao_1 Serine/threonine protei 99.1 2.4E-09 8.4E-14 81.6 13.5 117 2-121 16-134 (477)
165 3dss_A Geranylgeranyl transfer 99.1 1.1E-07 3.9E-12 68.5 21.1 191 5-202 42-271 (331)
166 1elr_A TPR2A-domain of HOP; HO 99.1 3E-09 1E-13 66.0 11.5 114 27-143 4-123 (131)
167 3q7a_A Farnesyltransferase alp 99.1 4.9E-08 1.7E-12 70.7 18.9 171 7-182 69-257 (349)
168 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 7.4E-09 2.5E-13 78.6 14.8 131 27-159 268-413 (457)
169 1wao_1 Serine/threonine protei 99.1 2E-09 6.9E-14 82.1 11.6 124 30-156 9-134 (477)
170 1hxi_A PEX5, peroxisome target 99.0 6.5E-09 2.2E-13 64.1 11.3 96 29-126 19-114 (121)
171 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 7.9E-09 2.7E-13 78.4 13.9 150 42-194 249-413 (457)
172 2xev_A YBGF; tetratricopeptide 99.0 4.4E-08 1.5E-12 60.7 15.0 90 69-160 9-104 (129)
173 4e6h_A MRNA 3'-END-processing 99.0 1.1E-07 3.8E-12 75.2 20.5 205 9-217 326-556 (679)
174 3q7a_A Farnesyltransferase alp 99.0 1.8E-07 6.2E-12 67.8 19.9 179 30-214 57-253 (349)
175 1dce_A Protein (RAB geranylger 99.0 1E-07 3.4E-12 74.2 19.8 171 42-218 44-241 (567)
176 2xev_A YBGF; tetratricopeptide 99.0 1.9E-08 6.7E-13 62.3 12.9 107 100-210 5-117 (129)
177 3rkv_A Putative peptidylprolyl 99.0 9.2E-09 3.2E-13 66.7 11.6 65 97-162 63-127 (162)
178 3ro3_A PINS homolog, G-protein 99.0 8.3E-09 2.8E-13 66.4 11.3 131 65-195 12-157 (164)
179 3rkv_A Putative peptidylprolyl 99.0 1.2E-08 4.1E-13 66.1 12.0 80 130-212 61-141 (162)
180 1ihg_A Cyclophilin 40; ppiase 99.0 1.1E-08 3.8E-13 75.4 13.0 122 64-188 225-362 (370)
181 4f3v_A ESX-1 secretion system 99.0 2.4E-08 8.3E-13 70.1 14.0 141 28-173 103-247 (282)
182 1ihg_A Cyclophilin 40; ppiase 99.0 1.4E-08 4.7E-13 75.0 13.3 125 27-153 223-362 (370)
183 3k9i_A BH0479 protein; putativ 99.0 3.1E-09 1.1E-13 65.1 8.4 84 41-125 4-89 (117)
184 1dce_A Protein (RAB geranylger 99.0 8.9E-08 3E-12 74.5 17.7 173 8-185 45-244 (567)
185 3ro3_A PINS homolog, G-protein 99.0 9.1E-09 3.1E-13 66.2 10.6 134 27-160 9-157 (164)
186 2if4_A ATFKBP42; FKBP-like, al 99.0 4.5E-09 1.6E-13 76.6 9.8 148 28-196 180-328 (338)
187 3dss_A Geranylgeranyl transfer 98.9 1.2E-06 4.1E-11 63.2 21.4 189 8-203 90-309 (331)
188 3k9i_A BH0479 protein; putativ 98.9 4.8E-09 1.6E-13 64.2 7.5 87 75-162 3-91 (117)
189 2if4_A ATFKBP42; FKBP-like, al 98.9 9.3E-09 3.2E-13 75.0 10.2 126 63-210 180-305 (338)
190 2hr2_A Hypothetical protein; a 98.9 1.3E-07 4.5E-12 60.4 12.4 95 65-160 14-130 (159)
191 2hr2_A Hypothetical protein; a 98.8 2E-07 7E-12 59.5 12.4 99 27-126 11-131 (159)
192 4b4t_Q 26S proteasome regulato 98.8 5.7E-07 1.9E-11 67.5 16.2 164 33-196 10-204 (434)
193 1klx_A Cysteine rich protein B 98.8 8.9E-07 3.1E-11 55.7 13.8 55 33-90 31-89 (138)
194 1klx_A Cysteine rich protein B 98.7 9.3E-07 3.2E-11 55.7 13.6 113 40-163 8-128 (138)
195 3n71_A Histone lysine methyltr 98.7 2.9E-07 1E-11 70.1 12.6 121 39-159 321-462 (490)
196 2kat_A Uncharacterized protein 98.7 1.1E-07 3.9E-12 57.7 8.6 77 46-124 4-80 (115)
197 1na3_A Designed protein CTPR2; 98.7 4.6E-07 1.6E-11 52.2 10.9 61 64-125 11-71 (91)
198 3n71_A Histone lysine methyltr 98.7 2E-07 6.8E-12 71.1 11.4 126 71-196 318-464 (490)
199 2l6j_A TPR repeat-containing p 98.7 3.3E-07 1.1E-11 55.0 10.2 90 97-188 4-99 (111)
200 2l6j_A TPR repeat-containing p 98.7 1.5E-07 5.3E-12 56.5 8.7 65 61-126 3-67 (111)
201 2kat_A Uncharacterized protein 98.7 6E-07 2E-11 54.4 10.6 80 10-91 3-82 (115)
202 1zu2_A Mitochondrial import re 98.7 2.9E-07 9.9E-12 58.7 9.2 48 78-126 62-120 (158)
203 1na3_A Designed protein CTPR2; 98.6 8.2E-07 2.8E-11 51.1 10.7 83 96-180 8-90 (91)
204 1zu2_A Mitochondrial import re 98.6 3.4E-07 1.2E-11 58.4 8.5 94 74-171 14-128 (158)
205 2uy1_A Cleavage stimulation fa 98.6 4.9E-05 1.7E-09 58.3 20.8 176 9-195 196-412 (493)
206 3ma5_A Tetratricopeptide repea 98.4 4.2E-06 1.4E-10 49.4 9.0 62 62-124 7-68 (100)
207 3ma5_A Tetratricopeptide repea 98.4 2.3E-06 7.8E-11 50.5 7.7 64 96-160 6-69 (100)
208 3ly7_A Transcriptional activat 98.4 0.00012 4.2E-09 53.3 17.9 148 59-211 191-352 (372)
209 2kc7_A BFR218_protein; tetratr 98.2 3.8E-06 1.3E-10 49.2 6.5 56 70-126 8-64 (99)
210 3qww_A SET and MYND domain-con 98.1 2.1E-05 7E-10 59.2 9.1 61 99-159 342-409 (433)
211 3ly7_A Transcriptional activat 98.1 0.0002 6.8E-09 52.2 13.7 142 24-171 191-347 (372)
212 2uy1_A Cleavage stimulation fa 98.1 0.00061 2.1E-08 52.3 17.0 123 30-160 289-412 (493)
213 3qwp_A SET and MYND domain-con 98.0 0.00015 5.2E-09 54.5 12.6 88 72-159 297-398 (429)
214 3bee_A Putative YFRE protein; 98.0 0.00021 7.2E-09 41.4 10.7 65 61-126 5-72 (93)
215 3qwp_A SET and MYND domain-con 98.0 5.1E-05 1.8E-09 57.0 9.9 88 108-195 298-399 (429)
216 1pc2_A Mitochondria fission pr 98.0 7E-05 2.4E-09 47.3 8.9 84 78-163 14-102 (152)
217 2kc7_A BFR218_protein; tetratr 98.0 0.00016 5.6E-09 42.0 10.2 82 33-124 6-88 (99)
218 3qww_A SET and MYND domain-con 98.0 3.6E-05 1.2E-09 57.8 8.8 87 39-125 310-410 (433)
219 3bee_A Putative YFRE protein; 97.9 0.00026 8.8E-09 41.0 9.5 67 96-163 5-74 (93)
220 3u64_A Protein TP_0956; tetrat 97.9 0.00077 2.6E-08 47.4 13.3 94 113-208 179-283 (301)
221 2v5f_A Prolyl 4-hydroxylase su 97.9 0.00043 1.5E-08 41.0 10.3 69 26-94 4-78 (104)
222 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00068 2.3E-08 40.1 10.6 66 61-126 4-75 (104)
223 1pc2_A Mitochondria fission pr 97.8 0.00067 2.3E-08 42.9 10.7 82 44-126 15-100 (152)
224 3mkq_A Coatomer beta'-subunit; 97.7 0.0011 3.6E-08 53.9 13.6 78 29-124 631-708 (814)
225 3u64_A Protein TP_0956; tetrat 97.7 0.0009 3.1E-08 47.0 10.6 63 64-126 201-269 (301)
226 1nzn_A CGI-135 protein, fissio 97.5 0.002 7E-08 39.2 9.3 82 78-161 17-103 (126)
227 3mkq_A Coatomer beta'-subunit; 97.5 0.006 2.1E-07 49.5 14.9 103 35-158 660-762 (814)
228 3mkq_B Coatomer subunit alpha; 97.3 0.013 4.3E-07 38.1 13.2 129 35-193 13-141 (177)
229 3mkq_B Coatomer subunit alpha; 97.3 0.014 4.6E-07 37.9 13.6 125 4-158 17-141 (177)
230 4h7y_A Dual specificity protei 97.3 0.013 4.4E-07 36.8 11.3 64 111-176 74-137 (161)
231 4h7y_A Dual specificity protei 97.2 0.014 4.7E-07 36.7 13.3 51 146-197 74-124 (161)
232 1nzn_A CGI-135 protein, fissio 97.2 0.0099 3.4E-07 36.2 10.0 85 41-126 15-103 (126)
233 4gns_B Protein CSD3, chitin bi 97.1 0.011 3.7E-07 47.6 11.8 128 65-193 251-397 (754)
234 4gns_B Protein CSD3, chitin bi 96.9 0.021 7.3E-07 45.9 12.0 130 29-159 250-398 (754)
235 4b4t_P 26S proteasome regulato 96.6 0.15 5.2E-06 38.6 19.6 190 5-195 29-246 (445)
236 2ff4_A Probable regulatory pro 96.6 0.14 4.9E-06 37.9 15.0 112 61-173 111-251 (388)
237 2ff4_A Probable regulatory pro 96.5 0.018 6.3E-07 42.7 8.7 112 96-208 111-251 (388)
238 4fhn_B Nucleoporin NUP120; pro 96.2 0.48 1.6E-05 40.5 16.7 166 26-194 841-1048(1139)
239 1wy6_A Hypothetical protein ST 96.2 0.099 3.4E-06 32.3 15.2 68 131-199 90-157 (172)
240 4fhn_B Nucleoporin NUP120; pro 96.2 0.38 1.3E-05 41.1 15.8 146 32-184 817-988 (1139)
241 1v54_E Cytochrome C oxidase po 95.7 0.13 4.5E-06 29.8 8.6 44 116-159 29-72 (109)
242 1wy6_A Hypothetical protein ST 95.6 0.21 7.3E-06 30.9 12.9 83 75-163 74-156 (172)
243 4b4t_R RPN7, 26S proteasome re 95.5 0.57 2E-05 35.3 12.8 97 64-160 133-236 (429)
244 3o48_A Mitochondria fission 1 95.3 0.26 8.8E-06 30.3 10.4 69 94-162 37-108 (134)
245 2y69_E Cytochrome C oxidase su 95.1 0.3 1E-05 30.0 8.6 44 151-194 72-115 (152)
246 4ady_A RPN2, 26S proteasome re 95.0 0.75 2.6E-05 38.2 12.7 123 69-194 497-621 (963)
247 1y8m_A FIS1; mitochondria, unk 94.8 0.4 1.4E-05 29.8 12.3 68 95-162 37-107 (144)
248 3ffl_A Anaphase-promoting comp 94.6 0.51 1.8E-05 30.2 9.2 56 69-124 27-90 (167)
249 3o48_A Mitochondria fission 1 94.3 0.51 1.7E-05 29.0 11.6 69 58-126 36-107 (134)
250 1v54_E Cytochrome C oxidase po 94.3 0.41 1.4E-05 27.8 9.5 50 42-91 25-74 (109)
251 4ady_A RPN2, 26S proteasome re 94.1 2.2 7.5E-05 35.6 16.4 171 32-209 495-668 (963)
252 4b4t_R RPN7, 26S proteasome re 94.1 1.2 4E-05 33.6 11.4 97 29-125 133-236 (429)
253 1zbp_A Hypothetical protein VP 94.1 0.24 8.3E-06 34.4 7.0 53 3-56 8-60 (273)
254 1zbp_A Hypothetical protein VP 93.8 0.77 2.6E-05 32.0 9.0 115 35-160 5-128 (273)
255 3ffl_A Anaphase-promoting comp 93.8 0.8 2.7E-05 29.3 8.9 96 98-193 21-148 (167)
256 3txn_A 26S proteasome regulato 93.5 1.7 5.9E-05 32.3 17.0 166 28-194 20-208 (394)
257 3lvg_A Clathrin heavy chain 1; 93.3 4.2E-06 1.5E-10 62.6 -18.4 115 27-156 54-168 (624)
258 2y69_E Cytochrome C oxidase su 93.1 0.92 3.1E-05 27.9 9.5 64 77-141 68-131 (152)
259 1y8m_A FIS1; mitochondria, unk 91.4 1.6 5.6E-05 27.1 13.2 68 59-126 36-106 (144)
260 2uwj_G Type III export protein 91.3 1.3 4.4E-05 25.7 8.7 79 41-127 20-98 (115)
261 2p58_C Putative type III secre 91.1 1.4 4.6E-05 25.6 9.7 79 41-127 21-99 (116)
262 3esl_A Checkpoint serine/threo 91.0 2.3 8E-05 28.2 9.3 57 111-167 93-150 (202)
263 3lpz_A GET4 (YOR164C homolog); 87.9 6.1 0.00021 28.6 16.3 189 6-213 10-214 (336)
264 3kae_A CDC27, possible protein 86.6 4.8 0.00017 26.1 7.2 28 64-91 116-143 (242)
265 3ltm_A Alpha-REP4; protein eng 86.1 5.4 0.00019 26.2 20.1 183 11-216 20-202 (211)
266 3lpz_A GET4 (YOR164C homolog); 85.4 8.6 0.0003 27.9 20.8 174 3-195 23-215 (336)
267 4a1g_A Mitotic checkpoint seri 85.3 5.2 0.00018 25.2 8.8 51 151-201 84-135 (152)
268 3esl_A Checkpoint serine/threo 85.3 6.3 0.00021 26.2 10.2 73 59-131 74-149 (202)
269 3txn_A 26S proteasome regulato 83.9 11 0.00039 28.0 20.5 158 2-159 29-208 (394)
270 3lvg_A Clathrin heavy chain 1; 83.4 0.0037 1.3E-07 47.4 -9.3 87 26-121 82-168 (624)
271 3eiq_C Programmed cell death p 83.1 12 0.0004 27.5 12.8 69 134-203 219-289 (358)
272 2wvi_A Mitotic checkpoint seri 82.2 7.7 0.00026 24.8 8.9 52 116-167 79-131 (164)
273 3eyy_A Putative iron uptake re 81.0 7.8 0.00027 24.1 7.0 60 17-78 9-68 (145)
274 2uwj_G Type III export protein 80.8 6.2 0.00021 22.9 8.1 85 7-100 21-105 (115)
275 2p58_C Putative type III secre 80.2 6.7 0.00023 22.8 9.1 85 7-100 22-106 (116)
276 2fe3_A Peroxide operon regulat 78.7 9.4 0.00032 23.7 7.6 59 18-77 13-71 (145)
277 2ion_A PDCD4, programmed cell 78.6 10 0.00034 23.9 6.7 23 66-88 13-35 (152)
278 3bu8_A Telomeric repeat-bindin 78.3 13 0.00044 25.0 8.0 19 36-54 123-141 (235)
279 1mzb_A Ferric uptake regulatio 77.8 9.6 0.00033 23.3 6.9 60 18-78 9-69 (136)
280 2w57_A Ferric uptake regulatio 77.0 11 0.00038 23.6 7.1 62 17-79 7-69 (150)
281 4b4t_S RPN3, 26S proteasome re 76.5 25 0.00084 27.3 11.6 65 62-126 231-299 (523)
282 4b4t_P 26S proteasome regulato 75.5 24 0.00082 26.7 20.0 152 63-214 138-305 (445)
283 2nsz_A Programmed cell death p 75.1 11 0.00039 22.8 7.8 23 66-88 11-33 (129)
284 4gq2_M Nucleoporin NUP120; bet 74.4 39 0.0013 28.6 11.6 106 103-215 816-949 (950)
285 2ijq_A Hypothetical protein; s 74.2 14 0.00049 23.5 8.6 50 41-90 46-103 (161)
286 4ets_A Ferric uptake regulatio 74.1 9.4 0.00032 24.3 5.4 43 34-76 39-83 (162)
287 2wpv_A GET4, UPF0363 protein Y 73.9 22 0.00075 25.5 18.8 45 8-52 13-58 (312)
288 4aez_C MAD3, mitotic spindle c 73.8 9.1 0.00031 25.9 5.4 56 43-98 130-186 (223)
289 4gq2_M Nucleoporin NUP120; bet 73.2 42 0.0014 28.4 11.9 50 132-181 897-950 (950)
290 2d2s_A Exocyst complex compone 72.7 20 0.00068 24.5 9.4 91 67-160 23-119 (235)
291 4a1g_A Mitotic checkpoint seri 72.3 15 0.00053 23.1 10.0 72 59-133 65-137 (152)
292 4b4t_S RPN3, 26S proteasome re 71.7 33 0.0011 26.6 12.9 68 27-94 231-302 (523)
293 2xig_A Ferric uptake regulatio 70.2 17 0.00058 22.7 7.7 58 19-77 19-76 (150)
294 4ets_A Ferric uptake regulatio 69.9 17 0.0006 23.0 6.0 59 125-184 26-86 (162)
295 2wpv_A GET4, UPF0363 protein Y 69.8 28 0.00096 25.0 15.1 157 3-159 24-215 (312)
296 2ion_A PDCD4, programmed cell 69.2 18 0.00063 22.7 8.1 72 99-171 11-84 (152)
297 2o03_A Probable zinc uptake re 68.7 17 0.00058 22.0 5.7 44 139-182 17-60 (131)
298 3mwm_A ZUR, putative metal upt 67.5 16 0.00053 22.5 5.2 44 138-181 19-62 (139)
299 1wdy_A 2-5A-dependent ribonucl 67.4 11 0.00036 25.9 5.0 24 178-201 190-213 (285)
300 3kea_A K1L; tropism, ANK repea 67.3 11 0.00037 26.3 5.1 15 143-157 169-183 (285)
301 2o03_A Probable zinc uptake re 66.3 17 0.00058 22.0 5.2 47 32-78 15-61 (131)
302 2d2s_A Exocyst complex compone 66.1 29 0.00098 23.7 10.0 92 31-125 22-119 (235)
303 4aez_C MAD3, mitotic spindle c 65.9 28 0.00096 23.6 8.5 54 79-132 131-185 (223)
304 2wvi_A Mitotic checkpoint seri 65.8 23 0.0008 22.6 9.9 72 59-133 60-132 (164)
305 1k1a_A B-cell lymphoma 3-encod 65.4 22 0.00074 23.6 6.2 181 3-201 17-210 (241)
306 1qsa_A Protein (soluble lytic 64.5 53 0.0018 26.2 19.5 176 6-188 228-434 (618)
307 3mwm_A ZUR, putative metal upt 64.5 16 0.00054 22.5 4.8 48 31-78 17-64 (139)
308 2nsz_A Programmed cell death p 64.3 21 0.00073 21.6 9.4 70 99-169 9-80 (129)
309 2b7e_A PRE-mRNA processing pro 62.1 8.4 0.00029 19.8 2.6 29 79-107 3-31 (59)
310 3ygs_P Procaspase 9; apoptosis 61.3 20 0.0007 20.4 5.2 65 13-83 25-89 (97)
311 3eyy_A Putative iron uptake re 60.5 27 0.00093 21.6 7.0 57 53-111 10-66 (145)
312 3ltj_A Alpharep-4; protein eng 60.3 31 0.0011 22.2 20.7 170 25-214 26-195 (201)
313 3f3f_C Nucleoporin NUP85; stru 59.9 61 0.0021 25.6 8.0 73 77-151 496-568 (570)
314 3pvs_A Replication-associated 59.4 56 0.0019 24.8 13.0 28 25-54 192-219 (447)
315 2fu4_A Ferric uptake regulatio 58.8 20 0.00067 19.4 7.4 58 158-216 8-66 (83)
316 2xig_A Ferric uptake regulatio 58.8 30 0.001 21.5 8.4 40 174-213 33-72 (150)
317 3bu8_A Telomeric repeat-bindin 57.7 41 0.0014 22.7 11.5 49 78-126 88-143 (235)
318 3t5v_B Nuclear mRNA export pro 57.7 44 0.0015 25.5 6.9 62 99-160 178-248 (455)
319 1mzb_A Ferric uptake regulatio 57.4 30 0.001 21.1 6.9 36 147-182 33-68 (136)
320 2ijq_A Hypothetical protein; s 57.3 34 0.0012 21.8 8.7 52 74-125 44-103 (161)
321 2w57_A Ferric uptake regulatio 57.3 32 0.0011 21.4 6.6 36 147-182 32-67 (150)
322 2fe3_A Peroxide operon regulat 56.6 32 0.0011 21.2 8.3 59 53-112 13-71 (145)
323 3kae_A CDC27, possible protein 56.0 39 0.0013 22.0 12.2 158 29-196 34-237 (242)
324 1ya0_A SMG-7 transcript varian 55.9 69 0.0024 24.8 10.8 74 68-143 158-231 (497)
325 3eiq_C Programmed cell death p 55.4 59 0.002 23.9 7.6 94 100-194 220-319 (358)
326 3bqo_A Telomeric repeat-bindin 54.8 44 0.0015 22.2 8.6 48 78-125 94-145 (211)
327 3f3f_C Nucleoporin NUP85; stru 53.5 56 0.0019 25.8 6.9 88 28-117 480-569 (570)
328 1qsa_A Protein (soluble lytic 52.3 89 0.003 25.0 20.1 116 76-195 228-347 (618)
329 3hra_A Ankyrin repeat family p 52.2 27 0.00091 22.4 4.7 60 141-202 112-173 (201)
330 2zu6_B Programmed cell death p 51.9 63 0.0021 23.1 6.9 68 101-169 170-239 (307)
331 3t5v_B Nuclear mRNA export pro 51.4 46 0.0016 25.4 6.2 63 64-126 178-249 (455)
332 2r9g_A AAA ATPase, central reg 51.2 51 0.0017 21.9 10.4 54 76-130 28-86 (204)
333 1ya0_A SMG-7 transcript varian 51.1 84 0.0029 24.3 10.6 73 103-177 158-230 (497)
334 3ltm_A Alpha-REP4; protein eng 50.4 49 0.0017 21.5 17.9 140 25-180 62-201 (211)
335 1ug3_A EIF4GI, eukaryotic prot 49.6 39 0.0013 24.5 5.5 64 64-129 13-78 (339)
336 3t8k_A Uncharacterized protein 49.5 49 0.0017 21.2 6.2 92 37-131 13-108 (186)
337 1ug3_A EIF4GI, eukaryotic prot 49.4 72 0.0025 23.1 7.0 64 29-94 13-78 (339)
338 1bpo_A Protein (clathrin); cla 48.6 91 0.0031 24.0 13.3 140 41-193 343-482 (494)
339 2cwy_A Hypothetical protein TT 47.8 37 0.0013 19.3 5.8 31 75-105 14-44 (94)
340 3l6a_A Eukaryotic translation 47.1 83 0.0028 23.1 12.3 56 2-58 22-79 (364)
341 3c1d_A Protein ORAA, regulator 47.0 51 0.0018 20.7 10.1 52 77-130 45-96 (159)
342 2zu6_B Programmed cell death p 46.5 78 0.0027 22.6 12.5 67 135-202 169-237 (307)
343 3mv2_A Coatomer subunit alpha; 46.1 82 0.0028 22.8 12.0 92 3-94 125-239 (325)
344 3qil_A Clathrin heavy chain 1; 45.7 24 0.00083 21.2 3.1 47 103-152 38-84 (125)
345 2yru_A Steroid receptor RNA ac 42.9 52 0.0018 19.6 5.3 20 106-125 70-89 (118)
346 1k1a_A B-cell lymphoma 3-encod 42.8 69 0.0024 21.0 6.4 154 34-201 13-177 (241)
347 3jxi_A Vanilloid receptor-rela 41.2 60 0.0021 21.8 5.3 22 72-93 12-33 (260)
348 1wgl_A TOLL-interacting protei 40.6 38 0.0013 17.3 4.4 14 146-159 37-50 (59)
349 2rg8_A Programmed cell death p 40.3 70 0.0024 20.4 5.2 24 31-54 14-37 (165)
350 1q2z_A ATP-dependent DNA helic 40.2 44 0.0015 20.0 3.8 50 147-199 42-95 (120)
351 1wty_A Hypothetical protein TT 40.2 57 0.0019 19.3 6.3 69 77-151 3-72 (119)
352 3d5l_A Regulatory protein RECX 40.2 83 0.0028 21.1 9.2 103 19-130 40-143 (221)
353 3mv2_A Coatomer subunit alpha; 39.8 1.1E+02 0.0036 22.2 14.8 20 72-91 124-143 (325)
354 3eu9_A Huntingtin-interacting 38.6 17 0.00057 24.0 2.1 19 33-51 45-63 (240)
355 3qil_A Clathrin heavy chain 1; 38.5 50 0.0017 19.9 3.7 50 67-119 37-86 (125)
356 4fke_A Aminopeptidase N; zinc 37.9 1.8E+02 0.0063 24.5 15.8 49 74-125 738-786 (909)
357 3ubw_A 14-3-3E, 14-3-3 protein 37.1 1E+02 0.0036 21.4 10.9 65 26-90 30-95 (261)
358 3e3v_A Regulatory protein RECX 36.2 86 0.0029 20.2 7.2 115 77-194 48-164 (177)
359 2etb_A Transient receptor pote 36.0 70 0.0024 21.4 4.9 55 70-125 7-71 (256)
360 3bge_A Predicted ATPase; struc 35.3 98 0.0033 20.5 9.9 19 41-59 21-39 (201)
361 2rpa_A Katanin P60 ATPase-cont 34.2 59 0.002 17.7 3.4 25 101-125 16-40 (78)
362 2p22_A Suppressor protein STP2 33.9 85 0.0029 20.3 4.5 46 63-109 112-157 (174)
363 2f6m_A Suppressor protein STP2 33.8 54 0.0019 17.2 4.9 24 69-92 9-32 (65)
364 2p22_A Suppressor protein STP2 33.4 60 0.0021 21.0 3.8 50 130-180 109-158 (174)
365 3bge_A Predicted ATPase; struc 33.3 1.1E+02 0.0036 20.4 10.4 54 75-128 20-78 (201)
366 2r9g_A AAA ATPase, central reg 33.0 1.1E+02 0.0037 20.4 10.9 61 32-93 16-84 (204)
367 1oai_A Nuclear RNA export fact 32.3 48 0.0016 16.9 2.6 17 181-197 34-50 (59)
368 3twr_A Tankyrase-2; ankyrin re 32.2 87 0.003 19.1 4.9 14 37-50 15-28 (165)
369 3lxu_X Tripeptidyl-peptidase 2 32.1 2.8E+02 0.0096 24.9 10.3 79 114-195 1266-1344(1354)
370 1rw2_A ATP-dependent DNA helic 30.7 39 0.0013 21.3 2.6 49 147-198 73-125 (152)
371 2qfz_A TBC1 domain family memb 30.1 1.5E+02 0.0053 21.3 6.6 112 9-124 189-313 (345)
372 2crb_A Nuclear receptor bindin 30.0 80 0.0027 17.9 4.0 25 99-123 17-41 (97)
373 2keb_A DNA polymerase subunit 29.3 86 0.0029 18.1 7.3 31 81-111 28-58 (101)
374 4b4t_O 26S proteasome regulato 28.6 1.8E+02 0.0061 21.6 9.8 85 33-117 82-189 (393)
375 3kea_A K1L; tropism, ANK repea 28.0 85 0.0029 21.7 4.3 170 4-194 8-185 (285)
376 2cos_A Serine/threonine protei 27.8 64 0.0022 16.1 3.2 11 148-158 38-48 (54)
377 2qx5_A Nucleoporin NIC96; mRNA 27.7 2.5E+02 0.0084 22.8 10.3 21 139-159 450-470 (661)
378 1bd8_A P19INK4D CDK4/6 inhibit 27.5 21 0.00073 21.7 1.0 18 35-52 7-24 (156)
379 1ixm_A SPO0B, protein (sporula 27.3 1.3E+02 0.0045 19.6 5.0 21 33-53 38-58 (192)
380 2qfz_A TBC1 domain family memb 27.1 1.8E+02 0.0061 21.0 6.9 112 79-194 189-313 (345)
381 2es9_A Putative cytoplasmic pr 27.0 90 0.0031 17.6 5.1 9 115-123 15-23 (115)
382 3ctd_A Putative ATPase, AAA fa 27.0 1.5E+02 0.005 20.0 10.6 47 30-76 35-84 (213)
383 4b4t_O 26S proteasome regulato 26.7 2E+02 0.0067 21.4 10.6 87 68-154 82-191 (393)
384 1bpo_A Protein (clathrin); cla 26.5 2.2E+02 0.0077 22.0 10.0 140 6-158 343-482 (494)
385 2rg8_A Programmed cell death p 26.5 1.3E+02 0.0044 19.1 6.2 25 65-89 13-37 (165)
386 3qye_A TBC1 domain family memb 26.4 1.8E+02 0.0061 20.8 8.9 134 42-182 164-309 (331)
387 3bqo_A Telomeric repeat-bindin 26.1 1.5E+02 0.0051 19.8 9.7 26 136-161 121-146 (211)
388 2ko4_A Mediator of RNA polymer 24.5 79 0.0027 17.3 2.7 31 128-158 32-62 (81)
389 3l6a_A Eukaryotic translation 24.4 2.1E+02 0.0073 21.0 11.5 61 29-93 14-79 (364)
390 2qq8_A TBC1 domain family memb 24.3 2E+02 0.0068 20.7 6.0 81 78-162 170-258 (334)
391 2jp7_A MRNA export factor MEX6 23.9 32 0.0011 17.5 1.1 13 6-18 33-45 (57)
392 3ltj_A Alpharep-4; protein eng 23.9 1.5E+02 0.005 18.9 19.1 140 25-180 57-196 (201)
393 2qq8_A TBC1 domain family memb 23.6 1.6E+02 0.0053 21.2 5.0 110 42-158 169-292 (334)
394 3ubw_A 14-3-3E, 14-3-3 protein 23.5 1.9E+02 0.0066 20.1 12.4 48 5-52 44-92 (261)
395 2pnn_A Transient receptor pote 21.7 1.6E+02 0.0055 19.9 4.7 18 73-90 21-38 (273)
396 2e2a_A Protein (enzyme IIA); h 21.7 1.3E+02 0.0044 17.5 3.7 17 142-158 30-46 (105)
397 3cqc_A Nuclear pore complex pr 21.5 2.1E+02 0.0073 19.9 7.8 26 29-54 36-61 (270)
398 2zrr_A Mundticin KS immunity p 21.4 39 0.0013 20.1 1.2 34 127-160 13-46 (118)
399 1wcr_A PTS system, N, N'-diace 21.1 1.3E+02 0.0045 17.4 3.7 17 142-158 28-44 (103)
400 2fv2_A RCD1 required for cell 20.5 2.3E+02 0.0077 19.9 5.1 54 71-124 182-236 (268)
401 3ka8_A Ferritin, middle subuni 20.2 1.3E+02 0.0043 19.3 3.6 108 78-193 60-170 (176)
402 2rfa_A Transient receptor pote 20.2 1.9E+02 0.0064 18.8 6.1 56 140-200 126-184 (232)
403 3qz3_A Ferritin; structural ge 20.1 1.9E+02 0.0064 18.7 4.4 109 42-159 59-167 (184)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.7e-39 Score=245.98 Aligned_cols=206 Identities=12% Similarity=0.165 Sum_probs=182.5
Q ss_pred HHHHHHHHHhhCCCCcCH-HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---------hh
Q 027412 10 AALKLFGQLTDRGLEPDI-ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR---------MD 79 (223)
Q Consensus 10 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 79 (223)
.+..+.+++.+++..+++ ..++.+|..|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 355566777777665554 46889999999999999999999999999999999999999999987665 67
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhc
Q 027412 160 DNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 215 (223)
+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|+.|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999988764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-36 Score=231.50 Aligned_cols=180 Identities=16% Similarity=0.216 Sum_probs=173.9
Q ss_pred CcccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCc---------hhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 027412 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR---------LDEAVQLFEKLTCVQLKPNSITFTILIDA 71 (223)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (223)
+|++.|++++|+++|++|.+.|++||..+|+.||.+|++.+. +++|.++|++|.+.|+.||..+|+.|+.+
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999987654 68899999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 027412 72 FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEA 151 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 151 (223)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 027412 152 LYAFHCALDNHLLPDVVTYAILIRGYCKA 180 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
.+++++|.+.+..|+..||+.++..|...
T Consensus 195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 195 YKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999998764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=7.9e-25 Score=170.97 Aligned_cols=214 Identities=9% Similarity=0.007 Sum_probs=169.7
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
.+.|++++|+++|+++.+.+. .+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 445556666666665555432 244455555666666666666666666555433 346788888999999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
++|+++.+..+. +..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999887665 78899999999999999999999999998875 6688899999999999999999999999998766
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC----CCCCc--hhhHHHHhhhHhhcCCCccc
Q 027412 163 LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN----GIMPD--GLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~~ 221 (223)
+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..+...|.+.|+.+++
T Consensus 472 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 472 Q-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 5 47889999999999999999999999999876 66787 67899999999988876543
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.6e-24 Score=168.05 Aligned_cols=215 Identities=17% Similarity=0.095 Sum_probs=182.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
|.+.|++++|+++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 457789999999999988664 4478889999999999999999999999988754 33678899999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
+++|+++.+.++. +..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 427 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999887665 78889999999999999999999999998765 667889999999999999999999999998765
Q ss_pred ----CCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCccc
Q 027412 162 ----HLLPD--VVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 162 ----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 221 (223)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..++..+...|.+.|+.+++
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 55676 7899999999999999999999999998853 33677888888888888876543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=5.9e-21 Score=141.84 Aligned_cols=210 Identities=19% Similarity=0.191 Sum_probs=135.6
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
...|++++|++.|+++.+.. +.+..+|..+..++...|++++|...|+++.+.++. +...+..+...+...|++++|.
T Consensus 146 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHH
Confidence 34567777777777766653 224566777777777777777777777776655422 4555666666666666666666
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
..+++.....+. +..++..+..++...|++++|...++++.+.+ +.+..++..++..+.+.|++++|.+.++++.+..
T Consensus 224 ~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 224 AAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666665544 55666667777777777777777777776654 4455666777777777777777777777766654
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc-hhhHHHHhhhHhhcCCCc
Q 027412 163 LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 219 (223)
+ .+..++..+...+...|++++|...++++.+. .|+ ..++..+...+.+.|+.+
T Consensus 302 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 302 P-THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCH
T ss_pred c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHH
Confidence 3 45666677777777777777777777776653 333 445666666666655544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=6.1e-20 Score=136.39 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=179.7
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|+..|+++.+.++ .+...+..+..++...|++++|...+++.....+. +..++..+..++.+.|++++|
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 4578999999999999998753 36788999999999999999999999999877533 678899999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
...|+++.+.++. +..+|..+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|.+.++++.+.
T Consensus 257 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 257 IDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999998776 77889999999999999999999999999875 778899999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCch-hhHHHHhhhHh
Q 027412 162 HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDG-LLLSTLADYNL 213 (223)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 213 (223)
.+ .+..++..+..++...|++++|...++++.+ +.|+. ..+..+-..+.
T Consensus 335 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 335 FP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLK 384 (388)
T ss_dssp CT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHH
Confidence 54 4688999999999999999999999999998 46664 44444444443
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=1.9e-20 Score=128.42 Aligned_cols=186 Identities=16% Similarity=0.061 Sum_probs=103.5
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-------
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE------- 75 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 75 (223)
.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++..+..+. +...+..+..++...
T Consensus 16 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~ 93 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAYVALYRQAEDR 93 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHTCSSH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhhhhhhhh
Confidence 44566666666666666553 224556666666666666666666666666555422 455566666666666
Q ss_pred ----CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 027412 76 ----GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEA 151 (223)
Q Consensus 76 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 151 (223)
|++++|+..+++..+..|. +...+..+..++...|++++|...|+++.+.+ .+...+..+..++...|++++|
T Consensus 94 ~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 94 ERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666665554 55566666666666666666666666666554 4555666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 152 LYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
...|++..+..+ .+...+..+..++...|++++|...+++..
T Consensus 171 ~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 171 LAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 666666665543 245556666666666666666666665543
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=9.2e-21 Score=139.68 Aligned_cols=212 Identities=16% Similarity=0.114 Sum_probs=172.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+..+ .+..++..+..+|...|++++|
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccccHHHH
Confidence 457899999999999998875 34788999999999999999999999999988753 3688999999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHH----------HHHHHHHHhhCChhHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHH
Q 027412 82 TMMFSKMLEKGPKANVVTY----------SCLIDGYFKSQNMKSAFDVYEEMCENNISP--NIVSYSILIDGLCKRGLME 149 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 149 (223)
...++++.+..+. +...+ ..+...+...|++++|...++++.+.. +. +..++..++..+...|+++
T Consensus 153 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 153 CEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHH
Confidence 9999999887543 22233 345788899999999999999998864 33 6788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc-hhhHHHHhhhHhhcCCCcc
Q 027412 150 EALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 150 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 220 (223)
+|.+.++++.+..+ .+..+|..+..++...|++++|...++++.+. .|+ ...+..+...+.+.|+.++
T Consensus 231 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 231 RAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999988765 47889999999999999999999999999884 455 5677777778887776554
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=3.5e-22 Score=158.51 Aligned_cols=150 Identities=10% Similarity=0.098 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh---cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 027412 62 SITFTILIDAFCKEGRMDDATMMFSKMLE---KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSIL 138 (223)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 138 (223)
..+|++|+++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999987753 578889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc------hhhHHHHhhh
Q 027412 139 IDGLCKRGL-MEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD------GLLLSTLADY 211 (223)
Q Consensus 139 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~ 211 (223)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999887 478889999999999999999998887655553 344444444 3345554 3344445555
Q ss_pred HhhcC
Q 027412 212 NLQSS 216 (223)
Q Consensus 212 ~~~~~ 216 (223)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 54443
No 10
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=7.7e-22 Score=156.57 Aligned_cols=120 Identities=13% Similarity=0.225 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHH---CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE---NNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAI 172 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 172 (223)
-..+|++++.+|++.|+.++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCc-chHHHHHHHHHHCCCCCchhhHHHHhhhHhhc
Q 027412 173 LIRGYCKAGRP-TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 215 (223)
Q Consensus 173 l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 215 (223)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++..+-+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999777665543
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=1.9e-19 Score=132.59 Aligned_cols=214 Identities=16% Similarity=0.084 Sum_probs=170.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+..+ .+..++..+..++...|++++|
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 456789999999999998875 34678889999999999999999999999887753 3778888899999999999988
Q ss_pred HHHHHHHHhcCCC-----------------------------------------------c---cHHHHHHHHHHHHhhC
Q 027412 82 TMMFSKMLEKGPK-----------------------------------------------A---NVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 82 ~~~~~~~~~~~~~-----------------------------------------------~---~~~~~~~l~~~~~~~~ 111 (223)
...++++....+. | +..++..+..++...|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 8888877665432 1 3567777888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 027412 112 NMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYD 191 (223)
Q Consensus 112 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 191 (223)
++++|...++++.... +.+..++..++..+...|++++|...++++.+..+ .+...+..+..++...|++++|...++
T Consensus 232 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 232 EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888888764 55677888888888888888888888888877654 467788888888888888888888888
Q ss_pred HHHHCCCCCc------------hhhHHHHhhhHhhcCCCccc
Q 027412 192 SMLRNGIMPD------------GLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 192 ~~~~~~~~p~------------~~~~~~l~~~~~~~~~~~~~ 221 (223)
++.+. .|+ ..++..+..++.+.|..+++
T Consensus 310 ~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 310 EALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 88764 222 46777777777777766543
No 12
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=1.1e-19 Score=126.32 Aligned_cols=202 Identities=17% Similarity=0.181 Sum_probs=168.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+... .+..++..+...+...|++++|
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhccHHHH
Confidence 567899999999999998864 34688899999999999999999999999987753 3778899999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.
T Consensus 111 ~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 111 KDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999998765 77889999999999999999999999998874 667889999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhh
Q 027412 162 HLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 210 (223)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 210 (223)
.+ .+..++..+..++...|++++|...++++.+. .|+.......+.
T Consensus 189 ~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 234 (243)
T 2q7f_A 189 DP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAKK 234 (243)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHHT
T ss_pred Cc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHHH
Confidence 65 46889999999999999999999999999984 566544433333
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1e-19 Score=137.51 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=171.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++.+.++. +..++..++.+|.+.|++++|
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 567899999999999998864 447889999999999999999999999999887633 688899999999999999999
Q ss_pred HHHHHHHHhcCCCccH---HHHHHH------------HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 82 TMMFSKMLEKGPKANV---VTYSCL------------IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
...|+++.+.++. +. ..+..+ ...+...|++++|...++++.+.. +.+..++..++.+|.+.|
T Consensus 114 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 114 EDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 9999999987665 44 555555 455899999999999999999875 678889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhH
Q 027412 147 LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLL 205 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 205 (223)
++++|.+.++++.+..+ .+..++..++.++...|++++|...++++.+. .|+....
T Consensus 192 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 247 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRC 247 (450)
T ss_dssp CGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHH
Confidence 99999999999987654 57889999999999999999999999999974 5655443
No 14
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=1.8e-19 Score=123.59 Aligned_cols=191 Identities=18% Similarity=0.117 Sum_probs=164.0
Q ss_pred CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHH
Q 027412 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (223)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (223)
+++...+..+...+.+.|++++|...|++..+..+. +...+..+..++.+.|++++|+..+++..+.+|. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 456778999999999999999999999999987643 7888999999999999999999999999999877 78899999
Q ss_pred HHHHHhh-----------CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 027412 104 IDGYFKS-----------QNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAI 172 (223)
Q Consensus 104 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 172 (223)
..++... |++++|...+++..+.. |.+...+..+..++...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999999875 6678899999999999999999999999999877 68899999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCc-hhhHHHHhhhHhhcCCCccc
Q 027412 173 LIRGYCKAGRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 173 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~ 221 (223)
+..++...|++++|...|++..+. .|+ ...+..+...+.+.|+.+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999984 565 45566666677777665543
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.2e-19 Score=137.09 Aligned_cols=189 Identities=15% Similarity=0.079 Sum_probs=106.2
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcH---HHHHHH----------
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS---ITFTIL---------- 68 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l---------- 68 (223)
+.+.|++++|+..|+++.+.+ +.+..++..+..++.+.|++++|...|+++.+..+. +. ..+..+
T Consensus 70 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 70 FLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHH
Confidence 345667777777777766654 224566667777777777777777777776655322 22 333333
Q ss_pred --HHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 69 --IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 69 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
...+...|++++|...|+++....+. +..++..++.+|...|++++|...|+++.+.. +.+..++..++.+|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33355566666666666666655443 55555556666666666666666666655442 344555555555566666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCcchHHHHHHHHHH
Q 027412 147 LMEEALYAFHCALDNHLLPDVVTYAIL------------IRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
++++|...++++....+ .+...+..+ +..+...|++++|...|+++.+
T Consensus 226 ~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666665555554332 123333322 4455555555555555555554
No 16
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=3.7e-19 Score=124.51 Aligned_cols=201 Identities=10% Similarity=-0.021 Sum_probs=171.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhHHHHH
Confidence 456789999999999988764 33678899999999999999999999999987653 3678888999999999999999
Q ss_pred HHHHHHHHh--cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 82 TMMFSKMLE--KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
.+.++++.. ..+. +...+..+..++...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.
T Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 125 YQRLLEASQDTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHTTCTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988 3333 67788889999999999999999999998865 5668889999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHh
Q 027412 160 DNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 209 (223)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 209 (223)
+..+ .+...+..+...+...|++++|.+.++++.+. .|+...+..++
T Consensus 203 ~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 249 (252)
T 2ho1_A 203 QGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQ 249 (252)
T ss_dssp TTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHH
T ss_pred HhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 8665 57788889999999999999999999999884 66665554443
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=1.1e-18 Score=119.82 Aligned_cols=203 Identities=12% Similarity=0.013 Sum_probs=170.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-CChhH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE-GRMDD 80 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 80 (223)
+...|++++|++.|+++.+.. +.+...+..+..++...|++++|...++++.+... .+..++..+...+... |++++
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCcHHH
Confidence 457899999999999998874 33678899999999999999999999999987653 3678889999999999 99999
Q ss_pred HHHHHHHHHhcCCC-ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 81 ATMMFSKMLEKGPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 81 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
|...++++.+.+.. .+...+..+..++...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999882212 246788889999999999999999999998864 5568889999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHh
Q 027412 160 DNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 209 (223)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 209 (223)
+..+..+...+..+...+...|+.+++..+++.+.+. .|+......++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 175 SRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 7654246777888888899999999999999998863 67766655544
No 18
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.3e-19 Score=125.69 Aligned_cols=205 Identities=16% Similarity=0.146 Sum_probs=169.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC--Cc----HHHHHHHHHHHHhc
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PN----SITFTILIDAFCKE 75 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~ 75 (223)
+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..++..+..++...
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 457899999999999998886 67889999999999999999999999998765321 11 57889999999999
Q ss_pred CChhHHHHHHHHHHhcCC-------------------------CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC
Q 027412 76 GRMDDATMMFSKMLEKGP-------------------------KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 130 (223)
|++++|...+++..+..+ +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 171 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE 171 (258)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cc
Confidence 999999999999988432 1245678888999999999999999999998875 66
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC----CCCchhhHH
Q 027412 131 NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNG----IMPDGLLLS 206 (223)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~ 206 (223)
+..++..+..++...|++++|...++++.+..+ .+...+..+..++...|++++|...+++..+.. ..|+.....
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~ 250 (258)
T 3uq3_A 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHH
Confidence 788899999999999999999999999988765 467889999999999999999999999988742 116655444
Q ss_pred HHhh
Q 027412 207 TLAD 210 (223)
Q Consensus 207 ~l~~ 210 (223)
..+.
T Consensus 251 ~~l~ 254 (258)
T 3uq3_A 251 QLYY 254 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.4e-19 Score=128.57 Aligned_cols=214 Identities=14% Similarity=0.020 Sum_probs=182.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-ChhH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG-RMDD 80 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 80 (223)
+...|++++|+++|+++.+..+ .+...+..++.++...|++++|..+++++.+..+ .+..++..+...+...| ++++
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhhhhHHH
Confidence 4567999999999999988753 3566777888999999999999999999987653 36778889999999999 9999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
|...|++..+..+. +...|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 110 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 110 ARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999988765 77889999999999999999999999999875 55677888899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC--------CCCchhhHHHHhhhHhhcCCCcc
Q 027412 161 NHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNG--------IMPDGLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~ 220 (223)
..+ .+...+..+...+...|++++|...++++.+.. ...+...+..+...+.+.|..++
T Consensus 188 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 188 IAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp TCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred hCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 765 478899999999999999999999999998741 12334677777778877776543
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=4.6e-20 Score=135.93 Aligned_cols=212 Identities=11% Similarity=0.040 Sum_probs=171.4
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC---------cHHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP---------NSITFTILIDAF 72 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~ 72 (223)
|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+..+.. ....+..+...+
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 567899999999999998875 3368899999999999999999999999998753110 122334568889
Q ss_pred HhcCChhHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 027412 73 CKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEA 151 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 151 (223)
...|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+.. +.+..++..++.+|...|++++|
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999986642 67889999999999999999999999999875 66788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc-------------hhhHHHHhhhHhhcCCC
Q 027412 152 LYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD-------------GLLLSTLADYNLQSSGS 218 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~ 218 (223)
...++++.+..+ .+..++..+..++...|++++|...|+++.+. .|+ ...+..+..++...|..
T Consensus 267 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 267 VEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999999998765 46889999999999999999999999999874 222 56677777777666554
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=6.1e-19 Score=127.83 Aligned_cols=188 Identities=14% Similarity=0.029 Sum_probs=84.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
+.|++++|+..++++.+.. +.+...+..+...+...| ++++|...++++.+..+. +...+..+..++...|++++|.
T Consensus 68 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 68 ELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555544432 113444444555555555 455555555555443311 3344444455555555555555
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
..+++..+..+. +...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+..
T Consensus 146 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 146 AAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 555544444333 33333444444444444444444444444432 3334444444444444444444444444443311
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 163 --------LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 163 --------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
......++..+..++...|++++|...+++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 011223444444444444444444444444443
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=7.8e-19 Score=127.12 Aligned_cols=213 Identities=13% Similarity=0.037 Sum_probs=172.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 456899999999999998875 3378889999999999999999999999998775 33778899999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHH--------------HH-HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCL--------------ID-GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
...++++....+. +...+..+ .. .+...|++++|...++++.+.. +.+..++..++..+...|
T Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 109 LASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhc
Confidence 9999999887654 44444443 33 4778889999999999998765 567888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCcc
Q 027412 147 LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 220 (223)
++++|.+.++++.+..+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+.++
T Consensus 187 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 187 NYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999887654 467888999999999999999999999988742 2345667777777777766543
No 23
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=4.2e-18 Score=113.64 Aligned_cols=174 Identities=17% Similarity=0.124 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
+..+|..+..++...|++++|+..|++..+..+. +..++..+..+|.+.|++++|...+.......+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 6778999999999999999999999999887644 7888999999999999999999999999988776 7788888999
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE 185 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 185 (223)
.+...++++.+...+.+..... +.+...+..+..++.+.|++++|++.|++..+..+ .+..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998875 66788999999999999999999999999998776 478899999999999999999
Q ss_pred HHHHHHHHHHCCCCCchhhH
Q 027412 186 AMQLYDSMLRNGIMPDGLLL 205 (223)
Q Consensus 186 a~~~~~~~~~~~~~p~~~~~ 205 (223)
|...|++.++ +.|+...|
T Consensus 160 A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHh--CCccCHHH
Confidence 9999999998 46765443
No 24
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=4.4e-18 Score=124.58 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=170.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+..++...|++++|
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHH
Confidence 467899999999999998875 34688999999999999999999999999987753 3678899999999999999999
Q ss_pred HHHHHHHHhcCC---CccHHHHHHH------------HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 82 TMMFSKMLEKGP---KANVVTYSCL------------IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 82 ~~~~~~~~~~~~---~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
...+++..+..+ . +...+..+ ...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 91 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 91 EDDFKKVLKSNPSEQE-EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCcccC-hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCC
Confidence 999999998766 3 55555555 688999999999999999999875 677889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCch
Q 027412 147 LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
++++|...++++.+..+ .+..++..+...+...|++++|...+++..+. .|+.
T Consensus 169 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~ 221 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDH 221 (359)
T ss_dssp CHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cccc
Confidence 99999999999998765 57889999999999999999999999999984 4443
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=6.5e-19 Score=127.53 Aligned_cols=214 Identities=14% Similarity=0.025 Sum_probs=176.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHH-------------
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL------------- 68 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 68 (223)
+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQ 142 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-----------------
T ss_pred HHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHH
Confidence 457899999999999998874 346888999999999999999999999999877433 22233322
Q ss_pred -HH-HHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 69 -ID-AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 69 -~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
.. .+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..++..+...|
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC
Confidence 22 367789999999999999998776 78899999999999999999999999999875 667889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-----------chhhHHHHhhhHhhc
Q 027412 147 LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMP-----------DGLLLSTLADYNLQS 215 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~ 215 (223)
++++|...++++.+..+ .+...+..+..++...|++++|...++++.+..... +...+..+..++.+.
T Consensus 221 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 221 RPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 99999999999988765 468899999999999999999999999998752221 356777788888777
Q ss_pred CCCcc
Q 027412 216 SGSQE 220 (223)
Q Consensus 216 ~~~~~ 220 (223)
|..++
T Consensus 300 g~~~~ 304 (327)
T 3cv0_A 300 NRPDL 304 (327)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 76543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.1e-17 Score=119.66 Aligned_cols=200 Identities=12% Similarity=0.091 Sum_probs=90.6
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChhHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 81 (223)
...|+++.|+..++. . -+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|++++|
T Consensus 45 i~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 45 LAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 344555555543322 1 13344445555555555555555555555554433222 333444444555555555555
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHHH
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSY---SILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
++.+++ +.+...+..++.++.+.|++++|...++++.+.. |+.... ..++..+...|++++|..+|+++
T Consensus 121 l~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 121 LRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 555544 1244445555555555555555555555555432 221110 11112222334555555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc-hhhHHHHhhhHhhcCC
Q 027412 159 LDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSG 217 (223)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 217 (223)
.+..+ .+...++.+..++...|++++|...++++++. .|+ ..++..+...+...|+
T Consensus 193 l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 193 ADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 54432 34445555555555555555555555555442 232 3344444444444443
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=8.8e-18 Score=120.09 Aligned_cols=194 Identities=15% Similarity=0.162 Sum_probs=159.5
Q ss_pred cccccCHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
+...|+.++|++.++++...+..| +...+..+..++...|++++|++.+++ +.+..++..++..+.+.|++++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 456788999999999998775434 567788888999999999999999987 4578889999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHH--HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVT--YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
|.+.++++.+.++. +... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++
T Consensus 149 A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 149 ARKELKKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988654 2211 1223344455689999999999999874 778899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHCCCCCchhhHH
Q 027412 159 LDNHLLPDVVTYAILIRGYCKAGRPTE-AMQLYDSMLRNGIMPDGLLLS 206 (223)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~ 206 (223)
++..+ -+..++..++..+...|+.++ +.++++++.+ +.|+.....
T Consensus 227 l~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~ 272 (291)
T 3mkr_A 227 LDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIK 272 (291)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 98776 478899999999999999976 6789999988 467655433
No 28
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=1.3e-16 Score=116.78 Aligned_cols=203 Identities=11% Similarity=0.056 Sum_probs=169.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 456799999999999998875 3478899999999999999999999999999775 34788999999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHH------------HHHHHHHhhCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhc
Q 027412 82 TMMFSKMLEKGPKANVVTYS------------CLIDGYFKSQNMKSAFDVYEEMCENNISPNI----VSYSILIDGLCKR 145 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 145 (223)
...+++..+..+. +...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..++...
T Consensus 208 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHc
Confidence 9999999988665 444443 23677899999999999999999864 3333 2355678899999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhh-HHHHhhh
Q 027412 146 GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLL-LSTLADY 211 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~ 211 (223)
|++++|...+++..+..+ .+..++..+..++...|++++|...|+++.+ +.|+... ...+..+
T Consensus 286 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKA 349 (359)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 999999999999988754 4788999999999999999999999999998 4676443 4444443
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.81 E-value=1.7e-17 Score=117.26 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=174.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCChh
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP--NSITFTILIDAFCKEGRMD 79 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 79 (223)
+...|++++|+..|+++.+..+ .+...+..+..++...|++++|...+++..+....+ ....|..+..++...|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 4678999999999999988753 356688999999999999999999999998743222 2445889999999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+|...+++..+..+. +..++..+..++...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++++.
T Consensus 92 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776 77899999999999999999999999998874 6677788888834455569999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCC---cchHHHHHHHHHHCC-CCCch------hhHHHHhhhHhhcCCCc
Q 027412 160 DNHLLPDVVTYAILIRGYCKAGR---PTEAMQLYDSMLRNG-IMPDG------LLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~~------~~~~~l~~~~~~~~~~~ 219 (223)
+..+ .+...+..+..++...|+ +++|...++++.+.. -.|+. ..+..+...+.+.|+.+
T Consensus 170 ~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 170 ELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 8765 357888889999999998 889999999988752 12442 45666666676666544
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.81 E-value=2.3e-17 Score=121.93 Aligned_cols=207 Identities=11% Similarity=0.020 Sum_probs=178.5
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
+.+.|++++|+..|+++++... -+..+|+.+..++...|+ +++|+..|+++.+..+. +..+|..+..++...|++++
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTT
T ss_pred HHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHH
Confidence 3467899999999999998753 368899999999999997 99999999999988644 78899999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh-cCCHHHH-----HHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK-RGLMEEA-----LYA 154 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~ 154 (223)
|+..|+++++.++. +...|..+..++...|++++|+..++++++.+ +.+...|+.+..++.. .|..++| +..
T Consensus 185 Al~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 185 ELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 99999999999887 89999999999999999999999999999986 6778999999999999 6665777 588
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHCCCCCc-hhhHHHHhhhHhhcC
Q 027412 155 FHCALDNHLLPDVVTYAILIRGYCKAG--RPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSS 216 (223)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~ 216 (223)
+++.+...+ -+...|..+..++...| ++++|.+.+.++ + ..|+ ...+..+...+.+.+
T Consensus 263 ~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 263 TLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHh
Confidence 998888766 37789999999999988 689999999888 3 3454 456667777777654
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=2.9e-17 Score=120.89 Aligned_cols=213 Identities=16% Similarity=0.059 Sum_probs=161.4
Q ss_pred ccccCHHHHHH-HHHHHhhCCCC-c--CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 3 IKECHLDAALK-LFGQLTDRGLE-P--DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 3 ~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
.-.|++++|++ .|++....... | +...+..+...+...|++++|...|+++.+..+ .+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34577888888 88766544221 1 345688899999999999999999999998763 3788899999999999999
Q ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC------------------------------
Q 027412 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI------------------------------ 128 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------ 128 (223)
++|...++++.+.++. +..++..+..++...|++++|...++++.....
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 9999999999998776 788999999999999999999999988776421
Q ss_pred -----------------CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 027412 129 -----------------SP---NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQ 188 (223)
Q Consensus 129 -----------------~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 188 (223)
.| +..++..++..+...|++++|...++++.+..+ .+..++..+..++...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 11 456777788888888888888888888877654 467788888888888888888888
Q ss_pred HHHHHHHCCCCCc-hhhHHHHhhhHhhcCCCcc
Q 027412 189 LYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 189 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 220 (223)
.++++.+. .|+ ...+..+...+.+.|+.++
T Consensus 273 ~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 273 AYRRALEL--QPGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 88888874 343 5566677777777665443
No 32
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.4e-17 Score=125.50 Aligned_cols=213 Identities=13% Similarity=0.053 Sum_probs=162.5
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|+..|+++.+.. |+...+..+..++...|++++|...++++.+.++ .+..++..++.++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHH
Confidence 467899999999999999874 6889999999999999999999999999988763 3678899999999999999999
Q ss_pred HHHHHHHHhcCCCc------------------------------------------------------------------
Q 027412 82 TMMFSKMLEKGPKA------------------------------------------------------------------ 95 (223)
Q Consensus 82 ~~~~~~~~~~~~~~------------------------------------------------------------------ 95 (223)
...|+++...++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 93 MFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 99999887765421
Q ss_pred ------------cHHHHHHHHHHHHh---hCChhHHHHHHHHHHH-----CCC--------CCChhHHHHHHHHHHhcCC
Q 027412 96 ------------NVVTYSCLIDGYFK---SQNMKSAFDVYEEMCE-----NNI--------SPNIVSYSILIDGLCKRGL 147 (223)
Q Consensus 96 ------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~ 147 (223)
+...+......+.. .|++++|...++++.+ ..- +.+..++..++..+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 12333334444443 7888888888888877 311 2235577788888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCcc
Q 027412 148 MEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 148 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 220 (223)
+++|...++++.+..+. ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|..++
T Consensus 253 ~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 253 PLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 88888888888876643 7778888888888888888888888887742 2244566666666666665543
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=6.3e-17 Score=110.96 Aligned_cols=190 Identities=10% Similarity=-0.041 Sum_probs=158.5
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
.+...+..+...+...|++++|...++++.+... .+...+..+..++...|++++|...+++.....+. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 3567889999999999999999999999987653 36788999999999999999999999999998765 788899999
Q ss_pred HHHHhh-CChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 105 DGYFKS-QNMKSAFDVYEEMCENNI-SPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 105 ~~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
..+... |++++|...++++.+.+. +.+...+..+..++...|++++|...++++.+..+ .+...+..+..++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 999999 999999999999988322 33467889999999999999999999999988665 468889999999999999
Q ss_pred cchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCC
Q 027412 183 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 217 (223)
Q Consensus 183 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 217 (223)
+++|...++++.+.....+...+..+...+...|.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 99999999999885211344455444444444443
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=9.1e-17 Score=112.28 Aligned_cols=189 Identities=13% Similarity=0.028 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|.+.++++.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 5678899999999999999999999998765 336788999999999999999999999999998765 78889999999
Q ss_pred HHhhCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 027412 107 YFKSQNMKSAFDVYEEMCENNI-SPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE 185 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 185 (223)
+...|++++|...++++...+. +.+...+..++..+...|++++|.+.++++.+..+ .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987322 34567889999999999999999999999988765 468889999999999999999
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCc
Q 027412 186 AMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 186 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (223)
|...++++.+.. ..+...+..+...+...|+.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHH
Confidence 999999998742 234555666666666666543
No 35
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-17 Score=127.80 Aligned_cols=211 Identities=14% Similarity=0.058 Sum_probs=159.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+...|++++|+..|+++.+.... ...+..+..++...|++++|...++++.+... .+..++..+..++...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence 45678888888888888776433 77788888888888888888888888876653 3566778888888888888888
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
...+++..+..+. +...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888877665 66778888888888888888888888887763 556677888888888888888888888877654
Q ss_pred CCC-CC----HHHHHHHHHHHHh---cCCcchHHHHHHHHHHCCCCCc-hhhHHHHhhhHhhcCCCc
Q 027412 162 HLL-PD----VVTYAILIRGYCK---AGRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 162 ~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 219 (223)
.+. ++ ...+..+..++.. .|++++|...++++.+. .|+ ...+..+...+.+.|+.+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHH
Confidence 321 11 3377778888888 88888888888888774 343 455666666666666544
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=3.4e-17 Score=113.70 Aligned_cols=192 Identities=14% Similarity=0.083 Sum_probs=149.1
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
.....+..+...+...|++++|...|+++.+... .+...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 3456788888999999999999999999987653 37888999999999999999999999999998765 788999999
Q ss_pred HHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 027412 105 DGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPT 184 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 184 (223)
..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+..+ .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999875 66788999999999999999999999999987655 47888999999999999999
Q ss_pred hHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCccc
Q 027412 185 EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 221 (223)
Q Consensus 185 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 221 (223)
+|...++++.+.. ..+...+..+...+.+.|+.+++
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHH
Confidence 9999999998852 23466777788888887766543
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=1.8e-15 Score=107.12 Aligned_cols=195 Identities=17% Similarity=0.125 Sum_probs=160.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK--- 74 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 74 (223)
+...|++++|+..|++..+. .+..++..+..++.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCC
Confidence 34678999999999998874 256778888888988 999999999999998775 67788889999988
Q ss_pred -cCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----c
Q 027412 75 -EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK----R 145 (223)
Q Consensus 75 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 145 (223)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .
T Consensus 90 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCC
Confidence 999999999999988864 66788888888988 899999999999998865 56778888888888 8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhh
Q 027412 146 GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCK----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 214 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 214 (223)
+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+ | ...+..+-..+..
T Consensus 164 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 164 KDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYN 230 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHc
Confidence 99999999999988764 46778888888888 899999999999988853 2 4555566666655
No 38
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=1.3e-16 Score=126.48 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
+..+++.|..++.+.|++++|+..|++..+..+. +..++..+..+|.+.|++++|+..|++.++.++. +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4778999999999999999999999999987643 6889999999999999999999999999998877 7899999999
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE 185 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 185 (223)
++...|++++|++.|++..+.+ +.+..+++.+..+|...|++++|++.|++.++..+ -+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999875 66788999999999999999999999999998776 378899999999999999999
Q ss_pred HHHHHHHHHH
Q 027412 186 AMQLYDSMLR 195 (223)
Q Consensus 186 a~~~~~~~~~ 195 (223)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.77 E-value=2.1e-16 Score=105.39 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=141.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
|.+.|++++|++.|++..+..+ -+..++..+..++.+.|++++|...+......... +...+..+...+...++++.+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 92 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEKQAA 92 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCHHHH
Confidence 4678999999999999998753 37889999999999999999999999999877543 677888889999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
...+.+.....+. +...+..+..++...|++++|+..|++..+.+ |.+..++..+..+|.+.|++++|.+.|++.++.
T Consensus 93 ~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 93 IDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999998776 78899999999999999999999999999875 677889999999999999999999999999886
Q ss_pred C
Q 027412 162 H 162 (223)
Q Consensus 162 ~ 162 (223)
.
T Consensus 171 ~ 171 (184)
T 3vtx_A 171 E 171 (184)
T ss_dssp T
T ss_pred C
Confidence 4
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.3e-16 Score=111.69 Aligned_cols=190 Identities=12% Similarity=0.103 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--c----HHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--N----VVT 99 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~ 99 (223)
....+..+...+...|++++|...|+++.+.. .+..++..+..++...|++++|...+++..+..+.. + ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678899999999999999999999998877 678899999999999999999999999998864431 1 578
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCC-------------------------CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 027412 100 YSCLIDGYFKSQNMKSAFDVYEEMCENN-------------------------ISPNIVSYSILIDGLCKRGLMEEALYA 154 (223)
Q Consensus 100 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 154 (223)
+..+..++...|++++|...++++.... .+.+...+..+...+...|++++|...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999998731 134566788899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc-hhhHHHHhhhHhhcCCCcc
Q 027412 155 FHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 220 (223)
++++.+..+ .+...+..+..++...|++++|...++++.+. .|+ ...+..+...+.+.|+.++
T Consensus 162 ~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 162 YTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHH
Confidence 999998765 47889999999999999999999999999985 444 5667777777777776543
No 41
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=3.5e-16 Score=107.85 Aligned_cols=181 Identities=13% Similarity=0.047 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
++..+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+.++. +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445566666666666666666666666665543345555555666666666666666666666665554 5556666666
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNI-------VSYSILIDGLCKRGLMEEALYAFHCALDNHLLP--DVVTYAILIRG 176 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 176 (223)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+..+ . +...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHHHH
Confidence 6666666666666666666543 3333 3455566666666666666666666665432 2 24555556666
Q ss_pred HHhcCCc---------------------------chHHHHHHHHHHCCCCCchhhHHHHhhh
Q 027412 177 YCKAGRP---------------------------TEAMQLYDSMLRNGIMPDGLLLSTLADY 211 (223)
Q Consensus 177 ~~~~g~~---------------------------~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 211 (223)
+...|+. ++|...+++..+ +.|+......++..
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 6655555 899999999998 46776655555443
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=7e-17 Score=114.14 Aligned_cols=193 Identities=16% Similarity=0.024 Sum_probs=150.7
Q ss_pred ccccCHHHHHHHHHHHhhCCC---CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 027412 3 IKECHLDAALKLFGQLTDRGL---EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (223)
...|++++|+..|+++.+... +.+..++..+..++...|++++|...|+++.+..+ .+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 456889999999999987632 12466788899999999999999999999987753 36788999999999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+|...+++..+..+. +..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999988765 67888999999999999999999999998753 443344444445566677777777776554
Q ss_pred hCCCC-------------------------------C-----CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc
Q 027412 160 DNHLL-------------------------------P-----DVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 160 ~~~~~-------------------------------~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
...+. | +...+..+..++...|++++|...|+++.+. .|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 32211 1 1467788888899999999999999998874 564
No 43
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.77 E-value=1.6e-16 Score=105.61 Aligned_cols=166 Identities=22% Similarity=0.185 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+..+. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 45678888999999999999999999986643 37788999999999999999999999999988665 78889999999
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 027412 107 YFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEA 186 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 186 (223)
+...|++++|...++++.... +.+...+..++..+...|++++|...++++.+..+ .+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998874 66788999999999999999999999999988764 4688999999999999999999
Q ss_pred HHHHHHHHHC
Q 027412 187 MQLYDSMLRN 196 (223)
Q Consensus 187 ~~~~~~~~~~ 196 (223)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999999874
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=1.4e-16 Score=122.81 Aligned_cols=209 Identities=15% Similarity=0.075 Sum_probs=133.5
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
...|++++|+..|+++.+. .|+...+..+..++...|++++|...++++.+..+ .+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHH
Confidence 3456777777777777765 34466677777777777777777777777766542 25666777777777777777777
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
..+++..+..+. +...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 777777776554 55667777777777777777777777777653 4556677777777777777777777777665432
Q ss_pred C-----CCCHHHHHHHHHHHHhc----------CCcchHHHHHHHHHHCCCCCc-hhhHHHHhhhHhhcCCC
Q 027412 163 L-----LPDVVTYAILIRGYCKA----------GRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGS 218 (223)
Q Consensus 163 ~-----~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~ 218 (223)
+ ......+.....++... |++++|...++++.+. .|+ ...+..+...+.+.|+.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccH
Confidence 1 11122233444555555 6666666666666653 232 34455555555555543
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1.1e-16 Score=113.06 Aligned_cols=206 Identities=9% Similarity=0.003 Sum_probs=166.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEP--DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (223)
+.+.|++++|++.|+++.+....+ ....|..+..++...|++++|...+++..+..+. +..++..+..+|...|+++
T Consensus 47 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 47 YYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHH
Confidence 567899999999999998843222 2445899999999999999999999999887533 6678999999999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC---HHHHHHHHH
Q 027412 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL---MEEALYAFH 156 (223)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 156 (223)
+|...+++..+..+. +...|..+...+...+++++|...++++.+.. +.+...+..+..++...|+ +++|...++
T Consensus 126 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 999999999988665 77788888834445569999999999999874 5567888889999999888 888998888
Q ss_pred HHHhCC-CCCC------HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhH
Q 027412 157 CALDNH-LLPD------VVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 212 (223)
Q Consensus 157 ~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 212 (223)
++.+.. ..|+ ..+|..+...|...|++++|...++++.+ +.|+.......+...
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHC--
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHhhhh
Confidence 877542 1122 25788899999999999999999999998 467766555544443
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.76 E-value=5e-17 Score=123.82 Aligned_cols=200 Identities=13% Similarity=-0.002 Sum_probs=139.6
Q ss_pred cCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCch-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL-DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
+.+++++..++...... +.+...+..+..++...|++ ++|+..|++..+..+. +..+|..+..+|...|++++|...
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34666777777665543 23567777777777778887 8888888777766432 567777777788888888888888
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhh---------CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc--------CC
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKS---------QNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR--------GL 147 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 147 (223)
|++..+..+ +...+..+..++... |++++|...++++.+.. +.+...+..+..+|... |+
T Consensus 160 ~~~al~~~p--~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHCK--NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhCC--CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 877777654 357777777777777 77888888888777764 55677777777777777 77
Q ss_pred HHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh-hHHHHhhhH
Q 027412 148 MEEALYAFHCALDNHLL--PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYN 212 (223)
Q Consensus 148 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~ 212 (223)
+++|...|++..+..+. .+...|..+..++...|++++|...|++..+. .|+.. .+..+...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 88888888777765431 26677777777788888888888888777763 44433 333333333
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.75 E-value=1.7e-16 Score=120.92 Aligned_cols=186 Identities=12% Similarity=-0.046 Sum_probs=166.1
Q ss_pred cccccCH-HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-----
Q 027412 2 LIKECHL-DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE----- 75 (223)
Q Consensus 2 ~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 75 (223)
+...|++ ++|++.|++..+... .+...|..+..+|...|++++|...|++..+.. |+...+..+..++...
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~ 188 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSG 188 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCH
T ss_pred HHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCCh
Confidence 4567999 999999999988753 368899999999999999999999999999874 5678899999999999
Q ss_pred ----CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh--------CChhHHHHHHHHHHHCCCC---CChhHHHHHHH
Q 027412 76 ----GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS--------QNMKSAFDVYEEMCENNIS---PNIVSYSILID 140 (223)
Q Consensus 76 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~ 140 (223)
|++++|+..+++..+..+. +...|..+..+|... |++++|...|+++.+.. + .+...+..+..
T Consensus 189 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 189 DEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRAT 266 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHH
Confidence 9999999999999998876 788999999999999 99999999999999864 4 58889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 141 GLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
+|...|++++|.+.|++..+..+ .+...+..+..++...|++++|...+.++
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998765 46788999999999999999998766443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=7.4e-16 Score=113.87 Aligned_cols=203 Identities=11% Similarity=-0.002 Sum_probs=170.3
Q ss_pred cccccC-HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 027412 2 LIKECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (223)
Q Consensus 2 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (223)
|.+.|+ +++|+..|+++.+.... +..+|..+..++...|++++|+..|+++.+..+. +..+|..+..++...|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHH
Confidence 446686 99999999999988643 7889999999999999999999999999988644 88899999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHh-hCChhHH-----HHHHHHHHHCCCCCChhHHHHHHHHHHhcC--CHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFK-SQNMKSA-----FDVYEEMCENNISPNIVSYSILIDGLCKRG--LMEEAL 152 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~ 152 (223)
|+..++++++.++. +...|+.+..++.. .|..++| +..+++++... +-+...|+.+..++...| ++++|+
T Consensus 219 Al~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 219 ELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 99999999999887 88999999999999 6665887 58899998875 667889999999999988 689999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CcchHHHHHHHH-HHCCCCCchhh-HHHHhhhH
Q 027412 153 YAFHCALDNHLLPDVVTYAILIRGYCKAG---------RPTEAMQLYDSM-LRNGIMPDGLL-LSTLADYN 212 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~-~~~~~~p~~~~-~~~l~~~~ 212 (223)
+.+.++ +..+ .+...+..++.+|.+.| ..++|.++++++ .+ +.|...- |..+...+
T Consensus 297 ~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 297 NQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHH
T ss_pred HHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHH
Confidence 999988 5444 57788899999998874 258999999998 66 5676554 33444433
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.8e-15 Score=108.03 Aligned_cols=203 Identities=11% Similarity=0.083 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-------cCch-------hHHHHHHHHHHh-CCCCCcHHHHHHHHHHHH
Q 027412 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCS-------LNRL-------DEAVQLFEKLTC-VQLKPNSITFTILIDAFC 73 (223)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 73 (223)
++|+.+|++..... +.++..|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45556666665542 2245555555555442 3553 566666666655 22 224455666666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKGPKANVV-TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC-KRGLMEEA 151 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 151 (223)
+.|++++|..+|++..+..+. +.. .|..++..+.+.|++++|..+|+++.+.+ +.+...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666654332 232 56666666666666666666666666543 333334433332221 24666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC-CCCc--hhhHHHHhhhHhhcC
Q 027412 152 LYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNG-IMPD--GLLLSTLADYNLQSS 216 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~ 216 (223)
.++|++..+..+ .+...|..++..+.+.|++++|..+|++.++.. +.|+ ...+..++....+.|
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 666666655433 245556666666666666666666666666542 2332 234444444444433
No 50
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=8.7e-16 Score=118.44 Aligned_cols=185 Identities=18% Similarity=0.139 Sum_probs=162.2
Q ss_pred cCHHHHHHHHHHHhhCCCCcC-------HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 6 CHLDAALKLFGQLTDRGLEPD-------IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
|++++|+.+|+++.+..+. + ..++..+...+...|++++|...++++.+.. |+..++..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 5899999999999887432 3 2357777788899999999999999998874 5578899999999999999
Q ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
++|...+++..+..+. +..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 293 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999998776 78899999999999999999999999999875 566789999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 159 LDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.+..+ .+...+..+...+...|++++|...++++.+.
T Consensus 371 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 371 KLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88765 46778999999999999999999999998874
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=2.8e-15 Score=108.05 Aligned_cols=185 Identities=12% Similarity=0.111 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHhh-CCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhcCChhHHHHHH
Q 027412 8 LDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMF 85 (223)
Q Consensus 8 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 85 (223)
+++|+.+|++..+ .. +.+...|..++..+.+.|++++|..+|+++.+..+. +.. +|..++..+.+.|++++|..+|
T Consensus 80 ~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 80 SDEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3999999999998 43 336778999999999999999999999999986432 343 8999999999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHH-hhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 027412 86 SKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH-L 163 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 163 (223)
++..+..+. +...|...+.... ..|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++..... .
T Consensus 158 ~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 999987654 5566654444432 3699999999999998764 5678899999999999999999999999999863 3
Q ss_pred CC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 164 LP--DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 164 ~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.| +...|..++......|+.++|..+++++.+.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34 5678999999999999999999999999884
No 52
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.6e-16 Score=113.06 Aligned_cols=194 Identities=15% Similarity=0.106 Sum_probs=155.7
Q ss_pred cccccCHHHHHHHHHHHhhC-------CCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC------C-CCCcHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR-------GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV------Q-LKPNSITFTI 67 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ 67 (223)
+...|++++|+.+|+++.+. ..+....++..+..++...|++++|...+++..+. + .+....++..
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45789999999999998773 22334677889999999999999999999998764 2 1234567889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC------C-CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC------C-CCCChh
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKG------P-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN------N-ISPNIV 133 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 133 (223)
+...+...|++++|...+++..+.. . ......+..+...+...|++++|..+++++... + .+....
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999887752 1 224567888999999999999999999998864 1 123355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------------------------------------CCCC
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDN------------------------------------------------HLLP 165 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------------------~~~~ 165 (223)
++..+..++...|++++|.+.++++.+. ....
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT 276 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch
Confidence 7888999999999999999999988752 1112
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 166 DVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
...++..+..+|...|++++|...+++..+
T Consensus 277 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 277 VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456778888899999999999999988876
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=1e-15 Score=108.20 Aligned_cols=181 Identities=13% Similarity=-0.029 Sum_probs=137.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+..+. +..++..+..++...|++++|
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 53 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHH
Confidence 457899999999999998875 336889999999999999999999999999887533 678889999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC-------------------------------CC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-------------------------------SP 130 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------------~~ 130 (223)
...++++.+..+. +. .....+..+...|++++|...+++...... .|
T Consensus 131 ~~~~~~a~~~~~~-~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 131 QDDLLAFYQDDPN-DP-FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHHHHHHHCTT-CH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHhCCC-Ch-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 9999999987654 33 333344455666888888888865554310 01
Q ss_pred -----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 027412 131 -----NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLY 190 (223)
Q Consensus 131 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 190 (223)
+..++..+...+...|++++|...|+++.+..+. + +.....++...|++++|++.+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T---CHHHHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h---HHHHHHHHHHHHHHHhhHHHH
Confidence 1467788899999999999999999999987542 3 233355677788888887765
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=1.3e-14 Score=102.60 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=159.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cC
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EG 76 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 76 (223)
.+++++|+..|++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +..++..+...|.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 789999999999999875 77889999999999 999999999999999874 77888999999999 99
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK----RGLM 148 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 148 (223)
++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 9999999999999875 46677888889988 899999999999999865 56788899999999 9999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCC
Q 027412 149 EEALYAFHCALDNHLLPDVVTYAILIRGYCK----AGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 197 (223)
++|...+++..+.+. ...+..+...|.. .+++++|...|++..+.|
T Consensus 203 ~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999998753 6778888999998 999999999999999864
No 55
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.72 E-value=4.6e-16 Score=110.15 Aligned_cols=192 Identities=17% Similarity=0.084 Sum_probs=150.5
Q ss_pred cccCHHHHHHHHHHHhh-------CCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC------CC-CCcHHHHHHHH
Q 027412 4 KECHLDAALKLFGQLTD-------RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV------QL-KPNSITFTILI 69 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 69 (223)
..|++++|+..|++..+ ...+....++..+..++...|++++|...++++.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45667777777776654 222334678899999999999999999999998754 21 22456889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC-----C--CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC------C-CCCChhHH
Q 027412 70 DAFCKEGRMDDATMMFSKMLEKG-----P--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN------N-ISPNIVSY 135 (223)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~ 135 (223)
.+|...|++++|...+++..... . +....++..+...+...|++++|...++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999887751 1 225678889999999999999999999998865 1 12345688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC------------------------------------------------CCCCCH
Q 027412 136 SILIDGLCKRGLMEEALYAFHCALDN------------------------------------------------HLLPDV 167 (223)
Q Consensus 136 ~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------------------~~~~~~ 167 (223)
..+..++...|++++|...++++.+. ......
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 89999999999999999999988753 111234
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 168 VTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 168 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
.++..+..++...|++++|..++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678888889999999999999988775
No 56
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.71 E-value=6.1e-15 Score=101.62 Aligned_cols=168 Identities=11% Similarity=0.045 Sum_probs=141.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|+..|++..+...+++...+..+..++...|++++|+..+++..+..+. +..++..+..++...|++++|
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A 95 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEY 95 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHH
Confidence 4578999999999999998765467788888999999999999999999999987643 778899999999999999999
Q ss_pred HHHHHHHHhcCCCccH-------HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCH----
Q 027412 82 TMMFSKMLEKGPKANV-------VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--NIVSYSILIDGLCKRGLM---- 148 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~---- 148 (223)
+..+++..+..+. +. ..|..+...+...|++++|...|+++.+.+ +. +...+..+..+|...|+.
T Consensus 96 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~~~~~~~~ 173 (228)
T 4i17_A 96 IATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLFYNNGADVLRK 173 (228)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765 55 568888999999999999999999999864 44 467888899999888887
Q ss_pred -----------------------HHHHHHHHHHHhCCCCCCHHHHHHH
Q 027412 149 -----------------------EEALYAFHCALDNHLLPDVVTYAIL 173 (223)
Q Consensus 149 -----------------------~~a~~~~~~~~~~~~~~~~~~~~~l 173 (223)
++|...+++..+..+ .+..+...+
T Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l 220 (228)
T 4i17_A 174 ATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQ 220 (228)
T ss_dssp HGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 888888888887654 244444433
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.70 E-value=4.5e-15 Score=98.51 Aligned_cols=157 Identities=18% Similarity=0.096 Sum_probs=139.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 95 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLA 95 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHH
Confidence 456799999999999988764 3468889999999999999999999999998765 33778889999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
...++++.+..+. +...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+.
T Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 96 VPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999988765 78889999999999999999999999999875 667889999999999999999999999988764
Q ss_pred C
Q 027412 162 H 162 (223)
Q Consensus 162 ~ 162 (223)
.
T Consensus 174 ~ 174 (186)
T 3as5_A 174 D 174 (186)
T ss_dssp H
T ss_pred C
Confidence 3
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=2.9e-15 Score=118.83 Aligned_cols=155 Identities=10% Similarity=0.040 Sum_probs=141.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
|.+.|++++|++.|++..+... -+..++..+..+|.+.|++++|+..|++..+.... +..+|..+..++.+.|++++|
T Consensus 19 ~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~~~A 96 (723)
T 4gyw_A 19 KREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGA 96 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 5678999999999999998753 36889999999999999999999999999987643 688999999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
++.|++..+.++. +..+|+.+..++...|++++|+..|+++.+.. +.+...+..++.++...|++++|.+.++++.+
T Consensus 97 ~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 97 LQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999998877 88999999999999999999999999999875 66788999999999999999999999988764
No 59
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=8.8e-18 Score=123.98 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (223)
..|..++..+...|++++|+.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~ 132 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRC 132 (449)
T ss_dssp -------------------------------------------------CHHHHTTTTT-------CC------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHH
Confidence 34444444444444444444444333322 2233444444444444444444444442 13444555555555
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 027412 108 FKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAM 187 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 187 (223)
...|.+++|..+|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|.
T Consensus 133 ~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp ----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 5555555555555543 24555555555555555555555554 14555555555666666555554
Q ss_pred H
Q 027412 188 Q 188 (223)
Q Consensus 188 ~ 188 (223)
.
T Consensus 198 ~ 198 (449)
T 1b89_A 198 M 198 (449)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=6.1e-17 Score=119.56 Aligned_cols=180 Identities=11% Similarity=0.094 Sum_probs=44.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3456666666666662 2236667777777777777777666542 355566666666666777777777
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55555442 2245566666777777777766666653 255556777777777777777777777644
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCCc
Q 027412 164 LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (223)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|...
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 24666677777777777777776666 25566666666666665443
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.66 E-value=2.9e-14 Score=96.91 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHH----------------HHHHHHhcCChhHHHHHHHHHHhcC
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI----------------LIDAFCKEGRMDDATMMFSKMLEKG 92 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 92 (223)
.+......+...|++++|+..|++..+..+. +...+.. +..++.+.|++++|+..|++..+.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3444455566777777777777777655321 3445555 8888888888888988888888887
Q ss_pred CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHH
Q 027412 93 PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL--MEEALYAFHCALDNHLLPDVVTY 170 (223)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 170 (223)
|. +...+..+..++...|++++|...|+++.+.+ |.+..++..+..+|...|+ .+.+...+..... +.|....+
T Consensus 85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 76 77888888888888889999998888888865 6667788888888766554 3445555554432 22333344
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHh
Q 027412 171 AILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 209 (223)
Q Consensus 171 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 209 (223)
.....++...|++++|...|++.++ +.|+......+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 5556667778888889988888887 577765554443
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=7.4e-15 Score=105.41 Aligned_cols=170 Identities=22% Similarity=0.174 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------C
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCV-------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK------G 92 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 92 (223)
...++..+...+...|++++|..+++++.+. .......++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677899999999999999999999998763 22335677889999999999999999999988765 2
Q ss_pred -CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 027412 93 -PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN------NI-SPNIVSYSILIDGLCKRGLMEEALYAFHCALDN--- 161 (223)
Q Consensus 93 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 161 (223)
......++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2234678888999999999999999999998864 11 234567888999999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 162 ---HLLP-DVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 162 ---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+..| ...++..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 345788899999999999999999999886
No 63
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.64 E-value=1.2e-14 Score=115.24 Aligned_cols=173 Identities=12% Similarity=-0.047 Sum_probs=148.9
Q ss_pred cccCHHHHHHHHHHHh--------hCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 027412 4 KECHLDAALKLFGQLT--------DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (223)
..|++++|++.+++.. +.. +.+...+..+..++...|++++|...|+++.+.+.. +...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 5689999999999998 443 336778999999999999999999999999887533 788899999999999
Q ss_pred CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 027412 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAF 155 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (223)
|++++|+..|++..+.++. +...|..+..++.+.|++++ ...|+++.+.+ +.+...+..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999998877 78899999999999999999 99999999875 667889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 156 HCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
+++.+.++ .+...+..+..++...++
T Consensus 558 ~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTST-THHHHHHHHHHHTC----
T ss_pred HhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 99887664 356778888888777665
No 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.63 E-value=1.9e-13 Score=96.11 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=142.2
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ccHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN---SITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVT 99 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 99 (223)
.+...+..+...+.+.|++++|...|+++.+..+. + ...+..+..++.+.|++++|+..|++..+..|. .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45777888889999999999999999999876433 3 678888999999999999999999999997653 13556
Q ss_pred HHHHHHHHHh--------hCChhHHHHHHHHHHHCCCCCChhHH-----------------HHHHHHHHhcCCHHHHHHH
Q 027412 100 YSCLIDGYFK--------SQNMKSAFDVYEEMCENNISPNIVSY-----------------SILIDGLCKRGLMEEALYA 154 (223)
Q Consensus 100 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~~ 154 (223)
+..+..++.. .|++++|...|+++.+.. |.+.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7778888988 999999999999998864 3344444 5668889999999999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCcchHHHHHHHHHHCCCCCch
Q 027412 155 FHCALDNHLLP--DVVTYAILIRGYCKA----------GRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 155 ~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
|+++.+..+.. ....+..+..++... |++++|...++++.+. .|+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 99998765432 356788888888876 8889999999999984 5654
No 65
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=1.7e-13 Score=86.03 Aligned_cols=128 Identities=24% Similarity=0.369 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK 144 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (223)
+..+...+...|++++|..+++++.+.++. +...+..+...+...|++++|...++++...+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 334444444455555555555554444332 34444444555555555555555555544432 3334444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 145 RGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
.|++++|.+.++++.+..+ .+...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555544332 2344445555555555555555555555544
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=5.6e-15 Score=110.36 Aligned_cols=218 Identities=15% Similarity=0.091 Sum_probs=162.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHhcCchhHHHHHHHHHHhC----C-CCCcHHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDI----ITYNTIICGYCSLNRLDEAVQLFEKLTCV----Q-LKPNSITFTILIDAF 72 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~ 72 (223)
+...|++++|+..|+++.+.+.. +. ..+..+..++...|++++|...+++..+. + ......++..+...|
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 136 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 45679999999999999887433 33 57889999999999999999999987653 1 122456788899999
Q ss_pred HhcCChhHHHHHHHHHHhcC-----CCccHHHHHHHHHHHHhhCC-----------------hhHHHHHHHHHHHC----
Q 027412 73 CKEGRMDDATMMFSKMLEKG-----PKANVVTYSCLIDGYFKSQN-----------------MKSAFDVYEEMCEN---- 126 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~---- 126 (223)
...|++++|...+++..... ......++..+...|...|+ +++|...+++..+.
T Consensus 137 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 216 (411)
T 4a1s_A 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL 216 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999877641 12245578889999999999 99999998887642
Q ss_pred CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC--
Q 027412 127 NI-SPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL-PD----VVTYAILIRGYCKAGRPTEAMQLYDSMLRNGI-- 198 (223)
Q Consensus 127 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 198 (223)
+. +....++..+...+...|++++|...+++..+.... ++ ...+..+..++...|++++|...+++..+...
T Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 11 122357888899999999999999999988753210 11 23778889999999999999999998876411
Q ss_pred C---CchhhHHHHhhhHhhcCCCcc
Q 027412 199 M---PDGLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 199 ~---p~~~~~~~l~~~~~~~~~~~~ 220 (223)
. ....++..+...+...|+.++
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 297 GEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 0 113456666666766665443
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.60 E-value=3.8e-14 Score=91.32 Aligned_cols=140 Identities=13% Similarity=0.022 Sum_probs=72.4
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
...|++++|+..+....... +-+...+..+..+|.+.|++++|++.|++..+..+. +..+|..+..+|...|++++|+
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHH
Confidence 34455566665555554431 112333445555555666666666666655554322 4555555555666666666666
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHH-HHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-YEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
..|++..+.+|. +..+|..+..+|.+.|+++++... ++++.+.. |.++.+|......+...|
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666655555544 455555555555555555544332 35555442 334445554444444444
No 68
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.60 E-value=3.1e-13 Score=84.78 Aligned_cols=131 Identities=21% Similarity=0.346 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (223)
.+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++...++. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 577888889999999999999999887653 36778888999999999999999999999888765 6778888999999
Q ss_pred hhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 109 KSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
..|++++|...++++.... +.+..++..++..+...|++++|...++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999998764 5567888899999999999999999999887654
No 69
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.59 E-value=1.7e-13 Score=93.17 Aligned_cols=166 Identities=15% Similarity=0.090 Sum_probs=130.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHH----------------HHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNT----------------IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 65 (223)
+.+.|++++|+..|++..+..+ .+...|.. +..++.+.|++++|+..|++..+..+. +...+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 91 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCL 91 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 4578999999999999988742 24556777 899999999999999999999987643 78899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 66 TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN--MKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
..+..++...|++++|+..|++..+.+|. +..+|..+..+|...|+ .+.+...++.... ..|....+.....++.
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHH
Confidence 99999999999999999999999999887 88899999998876654 4455666666543 2333345556677788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 027412 144 KRGLMEEALYAFHCALDNHLLPDVVTYAILI 174 (223)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 174 (223)
..|++++|...|++.++.. |+......+.
T Consensus 169 ~~~~~~~A~~~~~~al~l~--P~~~~~~~l~ 197 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRF--PSTEAQKTLD 197 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTS--CCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 8999999999999998765 5655444433
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=5.1e-14 Score=104.41 Aligned_cols=215 Identities=11% Similarity=0.037 Sum_probs=157.6
Q ss_pred cccccCHHHHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC------CCcHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR----GLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL------KPNSITFTILID 70 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~ 70 (223)
+...|++++|+..|++..+. +.++ ...++..+..++...|++++|...+++..+... .....+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 35679999999999998764 1111 246788999999999999999999998865311 112457888999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC-----ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC----CC-CCChhHHHHHHH
Q 027412 71 AFCKEGRMDDATMMFSKMLEKGPK-----ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NI-SPNIVSYSILID 140 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 140 (223)
+|...|++++|...+++..+.... ....++..+..+|...|++++|...+++..+. +. +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 999999999999999988764211 12247888999999999999999999998862 22 445678899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---cchHHHHHHHHHHCCCCCch-hhHHHHhhhH
Q 027412 141 GLCKRGLMEEALYAFHCALDNH----LLPDVVTYAILIRGYCKAGR---PTEAMQLYDSMLRNGIMPDG-LLLSTLADYN 212 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~ 212 (223)
.+.+.|++++|...+++..+.. -......+..+...+...|+ +++|..++++. +..|+. ..+..+...|
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHH
Confidence 9999999999999999887531 11122335677788888888 66666666654 334443 3455555666
Q ss_pred hhcCCCc
Q 027412 213 LQSSGSQ 219 (223)
Q Consensus 213 ~~~~~~~ 219 (223)
...|+.+
T Consensus 350 ~~~g~~~ 356 (383)
T 3ulq_A 350 HERKNFQ 356 (383)
T ss_dssp HHTTCHH
T ss_pred HHCCCHH
Confidence 6666544
No 71
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.59 E-value=8.4e-14 Score=99.58 Aligned_cols=200 Identities=13% Similarity=-0.023 Sum_probs=123.3
Q ss_pred ccccCHHHHHHHHHHHhhC----CCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC---CC--cHHHHHHHHHHH
Q 027412 3 IKECHLDAALKLFGQLTDR----GLEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL---KP--NSITFTILIDAF 72 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 72 (223)
...|++++|++.|++..+. |.+++ ..+|+.+..+|...|++++|+..+++..+... .+ -..+++.+...|
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 127 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3567777777777766543 21112 45777888888888888888888877754321 11 134677778888
Q ss_pred Hhc-CChhHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCh------hHHHHHHH
Q 027412 73 CKE-GRMDDATMMFSKMLEKGPKA-----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------VSYSILID 140 (223)
Q Consensus 73 ~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~ 140 (223)
... |++++|+..|++..+..+.. ...++..+...+...|++++|...|++..+....... ..+..+..
T Consensus 128 ~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 207 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 875 88888888888776643211 1345777788888888888888888888765322111 14666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHH--hcCCcchHHHHHHHHHHCCCCCchhh
Q 027412 141 GLCKRGLMEEALYAFHCALDNHLLP-D---VVTYAILIRGYC--KAGRPTEAMQLYDSMLRNGIMPDGLL 204 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~p~~~~ 204 (223)
++...|++++|...+++..+..+.. + ...+..++.++. ..+++++|+..|+++.. +.|+...
T Consensus 208 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~~ 275 (292)
T 1qqe_A 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKIT 275 (292)
T ss_dssp HHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHHH
Confidence 7888888888888888776543211 1 112344455543 33456666666655443 3454433
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.59 E-value=2.1e-13 Score=95.89 Aligned_cols=179 Identities=10% Similarity=0.020 Sum_probs=138.4
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcC---HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHh--
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPD---IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PNSITFTILIDAFCK-- 74 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-- 74 (223)
+.+.|++++|+..|+++.+..+. + ..++..+..++...|++++|...|+++.+..+. ....++..+..++..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 45789999999999999987432 3 678899999999999999999999999876431 235677888999998
Q ss_pred ------cCChhHHHHHHHHHHhcCCCccHHHH-----------------HHHHHHHHhhCChhHHHHHHHHHHHCCCCC-
Q 027412 75 ------EGRMDDATMMFSKMLEKGPKANVVTY-----------------SCLIDGYFKSQNMKSAFDVYEEMCENNISP- 130 (223)
Q Consensus 75 ------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 130 (223)
.|++++|+..|+++.+..|. +.... ..+..+|...|++++|...|+++.+.. +.
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~ 181 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-PDT 181 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTS
T ss_pred ccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCC
Confidence 99999999999999998765 33333 557889999999999999999998763 22
Q ss_pred --ChhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCc
Q 027412 131 --NIVSYSILIDGLCKR----------GLMEEALYAFHCALDNHLLPD--VVTYAILIRGYCKAGRP 183 (223)
Q Consensus 131 --~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 183 (223)
....+..+..+|... |++++|...|+++.+..+... ......+...+...+++
T Consensus 182 ~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 182 PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 345788888888876 899999999999987654221 23344444444444433
No 73
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.58 E-value=2e-14 Score=92.57 Aligned_cols=142 Identities=13% Similarity=0.030 Sum_probs=72.5
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhH
Q 027412 36 GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115 (223)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (223)
++...|++++|+..++....... .+...+..+..+|.+.|++++|++.|++.++.+|. +..+|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 34445555555555555543211 12233444555555666666666666665555544 55555555556666666666
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 027412 116 AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYA-FHCALDNHLLPDVVTYAILIRGYCKAG 181 (223)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 181 (223)
|...|++..+.+ |.+..++..+...|.+.|++++|.+. +++..+..+ -++.+|......+...|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 666665555543 33455555555555555555443332 345544433 24444544444444444
No 74
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=2.2e-12 Score=99.72 Aligned_cols=205 Identities=11% Similarity=0.092 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-------cCchh-------HHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 027412 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCS-------LNRLD-------EAVQLFEKLTCVQLKPNSITFTILIDAFCK 74 (223)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (223)
++|+.+|++..... +.++..|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36677888877653 3367788888887775 68876 889999988752223367888888888888
Q ss_pred cCChhHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHH-HHhcCCHHHHH
Q 027412 75 EGRMDDATMMFSKMLEKGPKAN-VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDG-LCKRGLMEEAL 152 (223)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 152 (223)
.|++++|..+|+++.+..+. + ...|..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...|++++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 99999999999998886543 3 3578888888888899999999999988753 3333344333322 33588999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC-CCCc--hhhHHHHhhhHhhcCC
Q 027412 153 YAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNG-IMPD--GLLLSTLADYNLQSSG 217 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~ 217 (223)
.+|++.++..+ .+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 412 ~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 412 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99998887654 367888888888889999999999999988863 2332 2255555555444443
No 75
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.57 E-value=1.6e-12 Score=89.33 Aligned_cols=170 Identities=11% Similarity=0.046 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC-C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccH--HHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-P-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV--VTYS 101 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 101 (223)
+...+..+...+.+.|++++|+..|+++.+..+. | ....+..++.++.+.|++++|+..|+++.+..|.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566667777788888888888887765322 1 2356667778888888888888888888776654221 2444
Q ss_pred HHHHHHHh------------------hCChhHHHHHHHHHHHCCCCCChhHH-----------------HHHHHHHHhcC
Q 027412 102 CLIDGYFK------------------SQNMKSAFDVYEEMCENNISPNIVSY-----------------SILIDGLCKRG 146 (223)
Q Consensus 102 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~ 146 (223)
.+..++.. .|++++|...|+++.+.. |.+.... ..+...|.+.|
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555443 567888888888888753 3333332 34567788999
Q ss_pred CHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 147 LMEEALYAFHCALDNHLLPD--VVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
++++|...|+++.+..+... ...+..+..++.+.|++++|.+.++.+...
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 99999999999987654321 357888999999999999999999998885
No 76
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.57 E-value=5.7e-13 Score=95.04 Aligned_cols=169 Identities=13% Similarity=0.046 Sum_probs=142.3
Q ss_pred CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHH
Q 027412 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (223)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (223)
+.+...+..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++++....+. ........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 445677888889999999999999999999887543 7788999999999999999999999999887664 33333444
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 027412 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLP-DVVTYAILIRGYCKAGR 182 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 182 (223)
...+...++.++|...+++..... |.+...+..+...+...|++++|...|.++.+..+.. +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 455778888999999999998875 7788999999999999999999999999999876532 26789999999999999
Q ss_pred cchHHHHHHHHHH
Q 027412 183 PTEAMQLYDSMLR 195 (223)
Q Consensus 183 ~~~a~~~~~~~~~ 195 (223)
.++|...+++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999987654
No 77
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.57 E-value=2.8e-13 Score=89.57 Aligned_cols=163 Identities=12% Similarity=0.024 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH-H
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-Y 107 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 107 (223)
.+..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|+..+++.....+ +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 456677788899999999999999876643 3678888999999999999999999999877655 44443333222 2
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCcchH
Q 027412 108 FKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLP-DVVTYAILIRGYCKAGRPTEA 186 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 186 (223)
...++...+...+++..+.. |.+...+..+..++...|++++|...|+++.+..+.+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 23334455788899988764 5678899999999999999999999999999877643 356888999999999999999
Q ss_pred HHHHHHHHH
Q 027412 187 MQLYDSMLR 195 (223)
Q Consensus 187 ~~~~~~~~~ 195 (223)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987764
No 78
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.57 E-value=3.1e-13 Score=105.29 Aligned_cols=155 Identities=7% Similarity=0.007 Sum_probs=123.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (223)
.|++++|++.|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988764 336788999999999999999999999999987633 688899999999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR---GLMEEALYAFHCALDN 161 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 161 (223)
+++..+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999998776 78899999999999999999999999999875 56788999999999999 9999999999999877
Q ss_pred CC
Q 027412 162 HL 163 (223)
Q Consensus 162 ~~ 163 (223)
++
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 79
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.7e-12 Score=100.31 Aligned_cols=189 Identities=12% Similarity=0.138 Sum_probs=153.8
Q ss_pred ccCHH-------HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcC
Q 027412 5 ECHLD-------AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-SITFTILIDAFCKEG 76 (223)
Q Consensus 5 ~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 76 (223)
.|+++ +|+.+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhc
Confidence 57776 89999999986322446889999999999999999999999999986422 3 358999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDG-YFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAF 155 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (223)
++++|..+|++..+..+. +...|...+.. +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|
T Consensus 371 ~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 999999999999886443 34444333333 346899999999999998864 557889999999999999999999999
Q ss_pred HHHHhCCC-CC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 156 HCALDNHL-LP--DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 156 ~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
++.....+ .| ....|...+......|+.+.+..++.++.+.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998643 22 2558888888888999999999999999874
No 80
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.56 E-value=1.9e-12 Score=88.18 Aligned_cols=179 Identities=11% Similarity=0.018 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC----ChhHHHHH
Q 027412 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG----RMDDATMM 84 (223)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 84 (223)
.+|++.|++..+.| ++..+..+...|...+++++|+.+|++..+.+ ++..+..|...|.. + ++++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35788898888764 77889999999999999999999999998865 66778888888888 6 89999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHh----hCChhHHHHHHHHHHHCCCC-CChhHHHHHHHHHHh----cCCHHHHHHHH
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNIS-PNIVSYSILIDGLCK----RGLMEEALYAF 155 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 155 (223)
|++..+.+ ++..+..|...|.. .+++++|..+|++..+.+.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998764 56788888888887 88999999999999987621 127888999999998 88999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc-C-----CcchHHHHHHHHHHCCCC
Q 027412 156 HCALDNHLLPDVVTYAILIRGYCKA-G-----RPTEAMQLYDSMLRNGIM 199 (223)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 199 (223)
++..+.+ .+...+..+...|... | ++++|..+|++..+.|..
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9998872 3445677788887654 3 899999999999987743
No 81
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=5.3e-14 Score=101.77 Aligned_cols=217 Identities=17% Similarity=0.123 Sum_probs=158.4
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcC----HHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CCC-CcHHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPD----IITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLK-PNSITFTILIDAF 72 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~ 72 (223)
+...|++++|+..|+++.+.... + ...+..+...+...|++++|...+++..+. +.. ....++..+...+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 45789999999999999887433 3 467888999999999999999999887543 111 2356788899999
Q ss_pred HhcCChhHHHHHHHHHHhcCCC-----ccHHHHHHHHHHHHhhCC--------------------hhHHHHHHHHHHHC-
Q 027412 73 CKEGRMDDATMMFSKMLEKGPK-----ANVVTYSCLIDGYFKSQN--------------------MKSAFDVYEEMCEN- 126 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~- 126 (223)
...|++++|...+++..+.... ....++..+...+...|+ +++|...+++....
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887664211 113478888899999999 99999988877542
Q ss_pred ---C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-
Q 027412 127 ---N-ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL-----LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN- 196 (223)
Q Consensus 127 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 196 (223)
+ .+....++..+...+...|++++|...+++..+... .....++..+...+...|++++|...+++..+.
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 112244778888899999999999999988764311 111337788888899999999999999888753
Q ss_pred ---CCCCc-hhhHHHHhhhHhhcCCCc
Q 027412 197 ---GIMPD-GLLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 197 ---~~~p~-~~~~~~l~~~~~~~~~~~ 219 (223)
+-.+. ..++..+...+...|+.+
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 254 RQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 11111 345556666666666543
No 82
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=5.1e-14 Score=104.70 Aligned_cols=217 Identities=17% Similarity=0.117 Sum_probs=161.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcC----HHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CCCC-cHHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPD----IITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILIDAF 72 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 72 (223)
+.+.|++++|+..|+++.+.... + ...+..+..++...|++++|...+++.... +..| ...++..+...+
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45789999999999999887433 3 357888999999999999999999987543 2112 255788899999
Q ss_pred HhcCChhHHHHHHHHHHhcCCC-----ccHHHHHHHHHHHHhhCC--------------------hhHHHHHHHHHHHC-
Q 027412 73 CKEGRMDDATMMFSKMLEKGPK-----ANVVTYSCLIDGYFKSQN--------------------MKSAFDVYEEMCEN- 126 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~- 126 (223)
...|++++|...+++.....+. ....++..+...+...|+ +++|...+++....
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764221 124478889999999999 99999999887643
Q ss_pred ---C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHC-
Q 027412 127 ---N-ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL-PD----VVTYAILIRGYCKAGRPTEAMQLYDSMLRN- 196 (223)
Q Consensus 127 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 196 (223)
+ .+....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 1122457888899999999999999999988743110 11 347888899999999999999999988753
Q ss_pred ---CCCCc-hhhHHHHhhhHhhcCCCc
Q 027412 197 ---GIMPD-GLLLSTLADYNLQSSGSQ 219 (223)
Q Consensus 197 ---~~~p~-~~~~~~l~~~~~~~~~~~ 219 (223)
+-.+. ..++..+...+...|+.+
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 11111 345666666676666544
No 83
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.54 E-value=5.6e-13 Score=103.81 Aligned_cols=153 Identities=12% Similarity=-0.007 Sum_probs=122.6
Q ss_pred cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHH
Q 027412 40 LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (223)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 119 (223)
.|++++|...+++..+... .+...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887653 36788999999999999999999999999998776 788999999999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHC
Q 027412 120 YEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA---GRPTEAMQLYDSMLRN 196 (223)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 196 (223)
+++..+.. +.+...+..+..++...|++++|.+.+++..+..+ .+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999875 66788999999999999999999999999988765 4678899999999999 9999999999999885
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.54 E-value=2.5e-13 Score=97.12 Aligned_cols=171 Identities=13% Similarity=-0.038 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---c--cHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK---A--NVV 98 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~ 98 (223)
.|......|...|++++|...|++..+. +..+ ...+|+.+..+|...|++++|+..+++.....+. + ...
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555677888999999999999988654 2122 2568999999999999999999999988765321 1 145
Q ss_pred HHHHHHHHHHhh-CChhHHHHHHHHHHHCCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 027412 99 TYSCLIDGYFKS-QNMKSAFDVYEEMCENNISP-N----IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDV----- 167 (223)
Q Consensus 99 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 167 (223)
+++.+..+|... |++++|+..|++..+..... + ..++..+...+.+.|++++|+..|++..+..+....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788899999996 99999999999988642100 1 357889999999999999999999999986543221
Q ss_pred -HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc
Q 027412 168 -VTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 168 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
..+..+..++...|++++|...+++..+ +.|+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~ 231 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPN 231 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 2677888899999999999999999886 3454
No 85
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1.6e-14 Score=107.89 Aligned_cols=219 Identities=13% Similarity=0.066 Sum_probs=162.2
Q ss_pred cccccCHHHHHHHHHHHhhC----CC-CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC-----CCCcHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR----GL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-----LKPNSITFTILIDA 71 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~ 71 (223)
|...|++++|+..|++..+. +. +.....+..+..++...|++++|...+++..+.. ......++..+...
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 96 YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 45679999999999987653 11 2235678889999999999999999999876541 12234578889999
Q ss_pred HHhcCC-----------------hhHHHHHHHHHHhc----CC-CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCC
Q 027412 72 FCKEGR-----------------MDDATMMFSKMLEK----GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129 (223)
Q Consensus 72 ~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 129 (223)
|...|+ +++|...+++..+. +. .....++..+...+...|++++|...+++..+....
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999 99999998877553 11 123457888999999999999999999988764200
Q ss_pred -CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC---
Q 027412 130 -PN----IVSYSILIDGLCKRGLMEEALYAFHCALDNHLL-----PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN--- 196 (223)
Q Consensus 130 -~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 196 (223)
++ ..++..+...|...|++++|...+++..+.... ....++..+...+...|++++|...+++..+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 237888999999999999999999988753210 12567888999999999999999999998764
Q ss_pred -CCCCc-hhhHHHHhhhHhhcCCCcc
Q 027412 197 -GIMPD-GLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 197 -~~~p~-~~~~~~l~~~~~~~~~~~~ 220 (223)
+-.+. ..++..+...+.+.|+.++
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHH
Confidence 11111 2356666677777665543
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.54 E-value=5.7e-12 Score=89.46 Aligned_cols=186 Identities=13% Similarity=0.089 Sum_probs=132.9
Q ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 027412 11 ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (223)
Q Consensus 11 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (223)
|+..|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556677666554 44566667888899999999999999998876653 2367788888999999999999999999998
Q ss_pred hcCC---CccHHHHHHHHHH--HHhhC--ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 90 EKGP---KANVVTYSCLIDG--YFKSQ--NMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 90 ~~~~---~~~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
+..+ ..+..+...++.+ ....| ++++|..+|+++... .|+..+...+..++.+.|++++|.+.++.+.+..
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 7643 1124444555555 33334 899999999998764 4543333444448889999999999998765431
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 163 ---------LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 163 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
-+.++.+...++......|+ +|.+++.++.+. .|+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 02367777677777777786 888999999884 56644
No 87
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=4.6e-12 Score=96.28 Aligned_cols=197 Identities=19% Similarity=0.117 Sum_probs=149.6
Q ss_pred ccccCHHHHHHHHHHHhhC--------CCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC-------CCCcHHHHHH
Q 027412 3 IKECHLDAALKLFGQLTDR--------GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-------LKPNSITFTI 67 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 67 (223)
...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.. ......++..
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 4679999999999987542 112246789999999999999999999998875421 1123566776
Q ss_pred HHHHHHhc--CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH---hhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 68 LIDAFCKE--GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF---KSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 68 l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
+..++... +++++|+..|++..+..|. ++..+..+..++. ..++.++|++.+++..+.+ +.+..++..+...+
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHH
Confidence 66666554 5799999999999998776 6777766666544 4577788999999998875 56677777776665
Q ss_pred Hh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhh
Q 027412 143 CK----RGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLL 204 (223)
Q Consensus 143 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 204 (223)
.. .+++++|.+.+++.....+ .+...+..+...+...|++++|...+++..+. .|+...
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 54 4678899999999887765 57788999999999999999999999999984 666443
No 88
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.52 E-value=3.9e-11 Score=91.87 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=107.4
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cC
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EG 76 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 76 (223)
.+++++|+..|++..+.| +...+..|...|.. .+++++|..+|++..+.+ ++..+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 466777777777766553 45566666666666 667777777777766543 44555556666666 56
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK----RGLM 148 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 148 (223)
++++|...|++....+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 6777777776666543 34555556666655 556666666666666543 45556666666665 5666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHC
Q 027412 149 EEALYAFHCALDNHLLPDVVTYAILIRGYCK----AGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 196 (223)
++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 66666666665543 34445555555554 45566666666655543
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.52 E-value=3.9e-13 Score=106.71 Aligned_cols=172 Identities=12% Similarity=-0.018 Sum_probs=146.6
Q ss_pred HhcCchhHHHHHHHHHH--------hCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 027412 38 CSLNRLDEAVQLFEKLT--------CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (223)
Q Consensus 38 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (223)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|+..|++..+.++. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999998 443 336678888999999999999999999999998776 78899999999999
Q ss_pred hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 027412 110 SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQL 189 (223)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 189 (223)
.|++++|...|+++.+.+ +.+...+..+..++.+.|++++ .+.|++..+.++ .+...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999875 6678899999999999999999 999999998776 4778999999999999999999999
Q ss_pred HHHHHHCCCCCch-hhHHHHhhhHhhcC
Q 027412 190 YDSMLRNGIMPDG-LLLSTLADYNLQSS 216 (223)
Q Consensus 190 ~~~~~~~~~~p~~-~~~~~l~~~~~~~~ 216 (223)
|+++.+ +.|+. ..+..+..++...+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC---
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccC
Confidence 999887 46764 44555555554433
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=2.6e-13 Score=95.87 Aligned_cols=159 Identities=20% Similarity=0.127 Sum_probs=125.1
Q ss_pred HhcCchhHHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CC-CccHHHHHHH
Q 027412 38 CSLNRLDEAVQLFEKLTCV-------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK------GP-KANVVTYSCL 103 (223)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 103 (223)
...|++++|+..+++..+. ..+....++..+...+...|++++|...+++..+. +. .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777666666542 22335678899999999999999999999988765 21 2246688999
Q ss_pred HHHHHhhCChhHHHHHHHHHHHC------C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHH
Q 027412 104 IDGYFKSQNMKSAFDVYEEMCEN------N-ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN------H-LLPDVVT 169 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 169 (223)
..++...|++++|...++++... . .+....++..+...+...|++++|...++++.+. + ......+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 1 1334678899999999999999999999998864 1 1124567
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 170 YAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 170 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
+..+..++...|++++|...++++.+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999998863
No 91
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.52 E-value=4.4e-11 Score=91.53 Aligned_cols=177 Identities=15% Similarity=0.075 Sum_probs=103.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cC
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EG 76 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 76 (223)
.+++++|+..|++..+.| ++..+..|...|.. .+++++|..+|++..+.+ ++..+..|...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 466777777777766653 44555666666666 566777777777666553 44555556666665 56
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCK----RGLM 148 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 148 (223)
++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 6666666666666543 44555556666655 566666666666666543 34455555555554 5566
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHC
Q 027412 149 EEALYAFHCALDNHLLPDVVTYAILIRGYCK----AGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 196 (223)
++|.++|++..+.+ +...+..+...+.. .+++++|..+|++..+.
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 66666666555442 33444444555544 55555555555555543
No 92
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=1.5e-13 Score=102.20 Aligned_cols=193 Identities=18% Similarity=0.101 Sum_probs=109.8
Q ss_pred ccccCHHHHHHHHHHHhhCCCC-cC----HHHHHHHHHHHHhcCc--------------------hhHHHHHHHHHHhC-
Q 027412 3 IKECHLDAALKLFGQLTDRGLE-PD----IITYNTIICGYCSLNR--------------------LDEAVQLFEKLTCV- 56 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~- 56 (223)
...|++++|+..+++..+.... ++ ..++..+..++...|+ +++|...+++..+.
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655442100 01 3356666666666666 66666666655332
Q ss_pred ---CCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 027412 57 ---QLK-PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK-----ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (223)
Q Consensus 57 ---~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 127 (223)
+.. ....++..+...+...|++++|...+++..+..+. ....++..+..++...|++++|...+++.....
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 111 11235566666666777777777777666543111 012356666677777777777777777665321
Q ss_pred ----CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 128 ----ISP-NIVSYSILIDGLCKRGLMEEALYAFHCALDNHL----L-PDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 128 ----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
.++ ...++..+...+...|++++|...+++..+... . ....++..+..++...|++++|...+++..+
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 134566667777777777777777766653211 0 1144566667777777777777777776654
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.51 E-value=4.5e-12 Score=87.15 Aligned_cols=160 Identities=12% Similarity=0.059 Sum_probs=125.4
Q ss_pred cccccCHHHHHHHHHHHhhCCCC-c-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHh---
Q 027412 2 LIKECHLDAALKLFGQLTDRGLE-P-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--SITFTILIDAFCK--- 74 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~--- 74 (223)
+.+.|++++|+..|+++.+..+. | ....+..+..++.+.|++++|+..|+++.+..+... ..++..+..++..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~ 93 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD 93 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh
Confidence 45789999999999999876432 1 246788899999999999999999999987653321 1245556666554
Q ss_pred ---------------cCChhHHHHHHHHHHhcCCCccHHHH-----------------HHHHHHHHhhCChhHHHHHHHH
Q 027412 75 ---------------EGRMDDATMMFSKMLEKGPKANVVTY-----------------SCLIDGYFKSQNMKSAFDVYEE 122 (223)
Q Consensus 75 ---------------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~~~ 122 (223)
.|++++|...|+++.+..|. +...+ ..+...|.+.|++++|...|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 94 SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 57899999999999988665 33332 3456778999999999999999
Q ss_pred HHHCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 123 MCENNISPNI---VSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 123 ~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
+.+.. |.+. ..+..+..++.+.|++++|.+.++.+...++
T Consensus 173 ~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 173 MLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 99863 3232 5788899999999999999999999887754
No 94
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=2.1e-12 Score=95.58 Aligned_cols=213 Identities=10% Similarity=0.022 Sum_probs=155.1
Q ss_pred ccccCHHHHHHHHHHHhhCCC-Cc----CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC---C--CC-cHHHHHHHHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGL-EP----DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---L--KP-NSITFTILIDA 71 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~--~~-~~~~~~~l~~~ 71 (223)
...|++++|+..|++..+... .+ ...++..+..+|...|+++.|...+++..+.. . .+ ...+++.+..+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 467999999999999876411 11 25578889999999999999999999876531 1 11 24578889999
Q ss_pred HHhcCChhHHHHHHHHHHhcC----C-CccHHHHHHHHHHHHhhCChhHHHHHHHHHHH-----CCCCCChhHHHHHHHH
Q 027412 72 FCKEGRMDDATMMFSKMLEKG----P-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNIVSYSILIDG 141 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~ 141 (223)
|...|++++|...+++..+.. . .....++..+..+|...|++++|...+++... .. +....++..+..+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~ 270 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWT 270 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHH
Confidence 999999999999998887641 1 11245788899999999999999999999886 43 4447788999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---cchHHHHHHHHHHCCCCCchh-hHHHHhhhHh
Q 027412 142 LCKRGLMEEALYAFHCALDNH----LLPDVVTYAILIRGYCKAGR---PTEAMQLYDSMLRNGIMPDGL-LLSTLADYNL 213 (223)
Q Consensus 142 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~ 213 (223)
+.+.|++++|...+++..+.. -......+..+...+...++ +.+|+..+++ .+..|+.. .+..+...|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHH
Confidence 999999999999999987632 11223456666667777777 6666666655 33344433 4444555555
Q ss_pred hcCCCc
Q 027412 214 QSSGSQ 219 (223)
Q Consensus 214 ~~~~~~ 219 (223)
..|+.+
T Consensus 348 ~~g~~~ 353 (378)
T 3q15_A 348 SSCHFE 353 (378)
T ss_dssp HTTCHH
T ss_pred HCCCHH
Confidence 555543
No 95
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=6.7e-13 Score=98.40 Aligned_cols=192 Identities=8% Similarity=-0.030 Sum_probs=147.6
Q ss_pred cccccCHHHHHHHHHHHhhC--CC----CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC----C-CcHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR--GL----EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL----K-PNSITFTILID 70 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~ 70 (223)
|...|+++.|+..+++..+. .. +....+++.+..+|...|++++|...+++..+... . ....++..+..
T Consensus 153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45679999999999987653 11 11245788999999999999999999998865421 1 12247888999
Q ss_pred HHHhcCChhHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC----CCCCChhHHHHHHHH
Q 027412 71 AFCKEGRMDDATMMFSKMLE-----KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NISPNIVSYSILIDG 141 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~ 141 (223)
+|...|++++|...+++..+ ...+....++..+..++...|++++|...+++.... +-+.....+..+...
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887 331335678899999999999999999999988753 112223346778888
Q ss_pred HHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 142 LCKRGL---MEEALYAFHCALDNHLLP-DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 142 ~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
+...|+ +++|+.++++. +..| ....+..+...|...|++++|...+++..+.
T Consensus 313 ~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888998 77777777765 2222 3456788999999999999999999998753
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.50 E-value=6.8e-13 Score=87.71 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=123.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCChhH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA-FCKEGRMDD 80 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 80 (223)
+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++....+ +...+..+... +...+....
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccch
Confidence 457899999999999988764 33678899999999999999999999999876643 44444333222 223334456
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-NIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
|...+++..+..|. +...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|++.+
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 78999999998776 78899999999999999999999999999864222 35689999999999999999999998765
Q ss_pred h
Q 027412 160 D 160 (223)
Q Consensus 160 ~ 160 (223)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 97
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=1.8e-13 Score=99.00 Aligned_cols=219 Identities=14% Similarity=0.039 Sum_probs=160.7
Q ss_pred cccccCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CCc----HHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR----GLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPN----SITFTILIDA 71 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~ 71 (223)
+...|++++|++.+++..+. +.. ....++..+..++...|++++|...+++..+... .++ ..++..+...
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 132 (338)
T 3ro2_A 53 YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 132 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 45679999999999987543 212 2256788899999999999999999998765321 111 3478889999
Q ss_pred HHhcCC--------------------hhHHHHHHHHHHhc----CC-CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 72 FCKEGR--------------------MDDATMMFSKMLEK----GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 72 ~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
+...|+ +++|...+++.... +. .....++..+...+...|++++|...+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999 99999998877543 11 113457888899999999999999999988753
Q ss_pred C-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 127 N-----ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL-P----DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 127 ~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
. ......++..+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 0111337888999999999999999999987743110 1 1567788999999999999999999988764
Q ss_pred ----CCCCc-hhhHHHHhhhHhhcCCCcc
Q 027412 197 ----GIMPD-GLLLSTLADYNLQSSGSQE 220 (223)
Q Consensus 197 ----~~~p~-~~~~~~l~~~~~~~~~~~~ 220 (223)
+-.+. ..++..+...+.+.|+.++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 11111 3356667777777766543
No 98
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=3.5e-12 Score=96.91 Aligned_cols=187 Identities=12% Similarity=0.033 Sum_probs=125.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH---HhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCC
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGY---CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EGR 77 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 77 (223)
.+++++|++.|++..+..+. ++..+..+..++ ...++.++|++.+++..+..+. +..++..+...+.. .++
T Consensus 151 ~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC-----
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhH
Confidence 35789999999998887432 455665555543 3456777888888888776533 55666666555544 456
Q ss_pred hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc------------
Q 027412 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR------------ 145 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 145 (223)
+++|.+.+++.....+. +..++..+...|...|++++|...++++.+.. |.+..++..+..+|...
T Consensus 229 ~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp -CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 78888888888887665 67788888888888899999988888888764 45556666665555322
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 146 -------GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 146 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
+.++.|...+++..+..+ .+..++..+...+...|++++|...|++.++.
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 234556666666655443 24445666777777777777777777777764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=3e-12 Score=91.25 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=129.2
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHH-HHHHHHHHHhcCChhH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT-FTILIDAFCKEGRMDD 80 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 80 (223)
+.+.|++++|+..|++..+..+ .+...+..+..++...|++++|...++++.... |+... .......+...++.+.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTSCH
T ss_pred HHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhcccCc
Confidence 4578999999999999988753 367889999999999999999999999997764 34433 3333444667788899
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--IVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
|...+++.....|. +...+..+...+...|++++|...|+++.+.. +.+ ...+..++..+...|+.++|...+++.
T Consensus 204 a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 204 EIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999998876 88899999999999999999999999999864 333 678999999999999999999998876
Q ss_pred Hh
Q 027412 159 LD 160 (223)
Q Consensus 159 ~~ 160 (223)
..
T Consensus 282 l~ 283 (287)
T 3qou_A 282 LY 283 (287)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 100
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.47 E-value=2.3e-11 Score=82.63 Aligned_cols=131 Identities=13% Similarity=0.018 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (223)
..+..+...+...|++++|...|++.. .|+..++..+..++...|++++|...+++.....+. +...|..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345667778888999999999998874 557888889999999999999999999999888765 778888899999
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 027412 108 FKSQNMKSAFDVYEEMCENNISPNI----------------VSYSILIDGLCKRGLMEEALYAFHCALDNHLL 164 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (223)
...|++++|...|+++.+.. +.+. ..+..+..++...|++++|.+.|++..+..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999988753 3323 67888889999999999999999998877653
No 101
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=4.8e-12 Score=93.67 Aligned_cols=190 Identities=15% Similarity=0.043 Sum_probs=146.2
Q ss_pred cccccCHHHHHHHHHHHhhC----CC-Cc-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CCC-CcHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR----GL-EP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLK-PNSITFTILID 70 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 70 (223)
|...|+++.|+..+++..+. +. .+ ...+++.+..+|...|++++|.+.+++..+. +.. ....++..+..
T Consensus 151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678999999999987653 11 11 2557889999999999999999999988653 111 12357888999
Q ss_pred HHHhcCChhHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC----CCCChhHHHHHHHH
Q 027412 71 AFCKEGRMDDATMMFSKMLE-----KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN----ISPNIVSYSILIDG 141 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~ 141 (223)
+|...|++++|...+++... ..+. ...++..+..++.+.|++++|...+++..+.. -+.....+..+...
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887 4444 47788999999999999999999999988642 12223456666677
Q ss_pred HHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 142 LCKRGL---MEEALYAFHCALDNHLLP-DVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 142 ~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+...++ +.+|+..+++. +..| ....+..+...|...|++++|...|++..+
T Consensus 310 y~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888 77777777652 2222 334667899999999999999999998875
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.43 E-value=5.9e-11 Score=80.58 Aligned_cols=145 Identities=12% Similarity=-0.077 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
..+..+...+...|++++|...|++.. .|+...|..+..++...|++++|...+++..... +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667888899999999999998873 4578899999999999999999999999999875 66788999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHH
Q 027412 143 CKRGLMEEALYAFHCALDNHLLP---------------DVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLST 207 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 207 (223)
...|++++|.+.|++..+..+.. ....+..+..++...|++++|...+++..+.........+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 99999999999999998864321 237889999999999999999999999998533223333333
Q ss_pred HhhhH
Q 027412 208 LADYN 212 (223)
Q Consensus 208 l~~~~ 212 (223)
.+..+
T Consensus 162 a~~~~ 166 (213)
T 1hh8_A 162 AMECV 166 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 103
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=4.5e-11 Score=88.17 Aligned_cols=216 Identities=9% Similarity=-0.040 Sum_probs=140.6
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHhcCchhHHHHHHHHHHhCCC---CC--cHHHHHHHHHHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDI----ITYNTIICGYCSLNRLDEAVQLFEKLTCVQL---KP--NSITFTILIDAFC 73 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 73 (223)
...|++++|+..+++........+. .++..+...+...|++++|...+++...... .+ ...++..+...+.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4578899999999887765422222 2466677788888999999988888754311 11 1234566778888
Q ss_pred hcCChhHHHHHHHHHHhcC----CC--c-cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCC----CChhHHHHHHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKG----PK--A-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS----PNIVSYSILIDGL 142 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~ 142 (223)
..|++++|...+++..... .. | ....+..+...+...|++++|...+++....... ....++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 8899999998888876542 11 2 3445667788888899999999999888754211 1234677788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHhcCCcchHHHHHHHHHHCCCCCc---hhhHHHHhhhHh
Q 027412 143 CKRGLMEEALYAFHCALDNHLLP--DVVTYA----ILIRGYCKAGRPTEAMQLYDSMLRNGIMPD---GLLLSTLADYNL 213 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 213 (223)
...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+. ...+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 88999999999888876431111 111111 233447788999999988888765422111 123444555555
Q ss_pred hcCCC
Q 027412 214 QSSGS 218 (223)
Q Consensus 214 ~~~~~ 218 (223)
..|+.
T Consensus 265 ~~g~~ 269 (373)
T 1hz4_A 265 LLGEF 269 (373)
T ss_dssp HTTCH
T ss_pred HcCCH
Confidence 55543
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.43 E-value=6e-12 Score=90.61 Aligned_cols=190 Identities=9% Similarity=0.005 Sum_probs=143.8
Q ss_pred cccCHHHHHHHHHHHhhC------CCCcC----HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC---CC--cHHHHHHH
Q 027412 4 KECHLDAALKLFGQLTDR------GLEPD----IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL---KP--NSITFTIL 68 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~------~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 68 (223)
..|++++|.+++++..+. +..++ ...|......|...|++++|...|.+..+... .+ -..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 468899999999877542 11233 33677888889999999999999998765421 11 24578889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC---Cc--cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCC---C--ChhHHHHH
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGP---KA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS---P--NIVSYSIL 138 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l 138 (223)
..+|...|++++|+..|++...... .+ ...++..+..+|.. |++++|+..|++....... + ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999998766421 11 24578888999988 9999999999988754211 1 14678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 139 IDGLCKRGLMEEALYAFHCALDN----HLLPD-VVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
...|...|++++|+..|++..+. +..++ ...+..+..++...|++++|...|++..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999988753 21111 2366777788888899999999999988
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.42 E-value=2.3e-11 Score=75.76 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
.+...+..|.+.|++++|+..|++.++.++. +..+|..+..++.+.|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3444555555555555555555555554443 44555555555555555555555555555443 334445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 027412 144 KRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~ 162 (223)
..|++++|.+.|++.++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 5555555555555555443
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.41 E-value=8.1e-12 Score=77.85 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 027412 97 VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRG 176 (223)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (223)
...+......|.+.|++++|+..|++.++.+ |.+..+|..+..++.+.|++++|+..+++.++.++ .+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 4678889999999999999999999999875 77889999999999999999999999999998776 478899999999
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhH
Q 027412 177 YCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 212 (223)
Q Consensus 177 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 212 (223)
+...|++++|.+.|++.++ +.|+......-+.-|
T Consensus 91 ~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHh
Confidence 9999999999999999998 578766554444433
No 107
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=3.5e-11 Score=88.76 Aligned_cols=217 Identities=14% Similarity=0.021 Sum_probs=151.6
Q ss_pred cccccCHHHHHHHHHHHhhCCC-CcC----HHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CCC--C-cHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGL-EPD----IITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLK--P-NSITFTILI 69 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~ 69 (223)
+...|++++|+..+++...... .++ ..++..+...+...|++++|...+++..+. +.. | ....+..+.
T Consensus 63 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 142 (373)
T 1hz4_A 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 3467999999999998765311 112 234677888899999999999999987653 221 2 345667788
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC--hhHHH----HHH
Q 027412 70 DAFCKEGRMDDATMMFSKMLEKGPKA----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--IVSYS----ILI 139 (223)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~ 139 (223)
..+...|++++|...+++........ ...++..+...+...|++++|...+++.....-.++ ..... ..+
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 222 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 89999999999999999987754321 235677888999999999999999998875411111 11111 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHHC----CCCCchh-hHHHHhhh
Q 027412 140 DGLCKRGLMEEALYAFHCALDNHLLP---DVVTYAILIRGYCKAGRPTEAMQLYDSMLRN----GIMPDGL-LLSTLADY 211 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~-~~~~l~~~ 211 (223)
..+...|++++|...+++.......+ ....+..+...+...|++++|...+++.... |..++.. .+..+..+
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~ 302 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 302 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 45779999999999999887644321 2335677888999999999999999988653 2222222 44444555
Q ss_pred HhhcCCC
Q 027412 212 NLQSSGS 218 (223)
Q Consensus 212 ~~~~~~~ 218 (223)
+...|+.
T Consensus 303 ~~~~g~~ 309 (373)
T 1hz4_A 303 YWQAGRK 309 (373)
T ss_dssp HHHHTCH
T ss_pred HHHhCCH
Confidence 5555543
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.39 E-value=5.1e-11 Score=77.49 Aligned_cols=128 Identities=14% Similarity=0.112 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
.+..+...+...|++++|...|++..+..+. +..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4455555566666666666666666655443 45556666666666666666666666666543 444556666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCcchHHHHHHHHH
Q 027412 144 KRGLMEEALYAFHCALDNHLLPDVVTYAI--LIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
..|++++|...++++.+..+ .+...+.. .+..+...|++++|...+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666666655443 23333322 2233555566666666665543
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.38 E-value=1.4e-10 Score=82.79 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=125.9
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCC-CCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-cc----HHHHH
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCVQL-KPNS----ITFTILIDAFCKEGRMDDATMMFSKMLEKGPK-AN----VVTYS 101 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 101 (223)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...+++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999886532 2232 23445777777888999999999999874322 12 33689
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHC-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHH
Q 027412 102 CLIDGYFKSQNMKSAFDVYEEMCEN-----NISP-NIVSYSILIDGLCKRGLMEEALYAFHCALDN----HLLP-DVVTY 170 (223)
Q Consensus 102 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 170 (223)
.+..+|...|++++|...++++.+. +..+ ...++..+..+|.+.|++++|...+++..+. +..+ -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999998841 1112 2347889999999999999999999987742 2222 26788
Q ss_pred HHHHHHHHhcCC-cchHHHHHHHHHH
Q 027412 171 AILIRGYCKAGR-PTEAMQLYDSMLR 195 (223)
Q Consensus 171 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 195 (223)
..+..++...|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999999988875
No 110
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.38 E-value=9.9e-11 Score=76.09 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
...+..+...+...|++++|...|++..+... .+..++..+..++...|++++|...+++..+..+. +...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 45678888899999999999999999987653 36888999999999999999999999999998765 78889999999
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCChhHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 027412 107 YFKSQNMKSAFDVYEEMCENNISPNIVSYSI--LIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+...|++++|...++++.... +.+...+.. .+..+...|++++|.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999864 455556644 4444778899999999987654
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.37 E-value=3.6e-12 Score=81.88 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILID 140 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 140 (223)
+...+..+...+.+.|++++|+..|++....+|. +...|..+..++...|++++|...|+++.... |.++..+..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 3456667777777888888888888888777665 77777778888888888888888888887764 556777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 027412 141 GLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
+|...|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888777654
No 112
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.37 E-value=2.2e-11 Score=80.36 Aligned_cols=123 Identities=12% Similarity=0.186 Sum_probs=79.0
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhhCCh--h
Q 027412 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-YFKSQNM--K 114 (223)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 114 (223)
...|++++|...+++..+..+ .+...+..+..+|...|++++|...|++..+..+. +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 445667777777777665542 35566777777777777777777777777666554 55666666666 6666776 7
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 115 SAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
+|...++++...+ +.+...+..+..++...|++++|...++++.+..+
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7777777776654 44566666777777777777777777777666543
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.37 E-value=1.6e-10 Score=78.68 Aligned_cols=153 Identities=12% Similarity=-0.030 Sum_probs=128.7
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC----chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN----RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK--- 74 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 74 (223)
|...+++++|+..|++..+.| ++..+..|..+|.. + ++++|..+|++..+.+ ++..+..|...|..
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g 100 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQA 100 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGG
T ss_pred HhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 345789999999999998875 66788888888888 7 8999999999998764 66778889999987
Q ss_pred -cCChhHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHh----hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-C-
Q 027412 75 -EGRMDDATMMFSKMLEKGPK-ANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR-G- 146 (223)
Q Consensus 75 -~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~- 146 (223)
.+++++|+..|++..+.++. .++..+..|...|.. .+++++|..+|++..+. +.+...+..+...|... |
T Consensus 101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg 178 (212)
T 3rjv_A 101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKG 178 (212)
T ss_dssp SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTT
T ss_pred CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCC
Confidence 88999999999999987653 136788889999988 88999999999999886 34566788888888764 3
Q ss_pred ----CHHHHHHHHHHHHhCCC
Q 027412 147 ----LMEEALYAFHCALDNHL 163 (223)
Q Consensus 147 ----~~~~a~~~~~~~~~~~~ 163 (223)
++++|..+|++..+.|.
T Consensus 179 ~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 179 FIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp TBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 89999999999988764
No 114
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.36 E-value=1.3e-10 Score=71.60 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
..+..+...+...|++++|...++++....+. +..++..+..++...|++++|...++++.... +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34444444555555555555555555444332 34444445555555555555555555544432 33344444555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 027412 143 CKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~ 161 (223)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555554443
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.36 E-value=2e-12 Score=83.13 Aligned_cols=104 Identities=10% Similarity=0.037 Sum_probs=94.3
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIR 175 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 175 (223)
+...+..+...+.+.|++++|...|+++...+ |.+...|..+..++...|++++|+..|++..+..+ .++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 56788889999999999999999999999876 77889999999999999999999999999998776 46788999999
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 176 GYCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 176 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
++...|++++|...|++.++. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999999984 56654
No 116
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.36 E-value=1.3e-10 Score=72.19 Aligned_cols=119 Identities=17% Similarity=0.082 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 027412 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDG 141 (223)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (223)
...+..+...+...|++++|...+++.....+. +...+..+..++...|++++|...+++..... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 344455555555555566666555555554433 44555555555555666666666665555542 3345555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 027412 142 LCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRP 183 (223)
Q Consensus 142 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 183 (223)
+...|++++|...+++..+..+ .+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 6666666666666665555433 2444555555555555443
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.36 E-value=2.8e-11 Score=79.85 Aligned_cols=123 Identities=11% Similarity=0.176 Sum_probs=104.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCCh--
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA-FCKEGRM-- 78 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 78 (223)
+...|++++|+..++...+.. +.+...+..+..++...|++++|...|++..+..+ .+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 457789999999999988775 34778999999999999999999999999987653 367788888888 7889998
Q ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 027412 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 127 (223)
++|...+++..+.++. +...+..+..++...|++++|...++++.+..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999998776 78889999999999999999999999999864
No 118
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.35 E-value=5.7e-11 Score=79.91 Aligned_cols=158 Identities=16% Similarity=0.015 Sum_probs=99.7
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHhcC
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLK-PNSITFTILIDAFCKEG 76 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~ 76 (223)
+...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45678888888855554432 2234667788888888888888888888877552 111 23456777777888888
Q ss_pred ChhHHHHHHHHHHhc---CC-C--ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC----CCC-CChhHHHHHHHHHHhc
Q 027412 77 RMDDATMMFSKMLEK---GP-K--ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NIS-PNIVSYSILIDGLCKR 145 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~ 145 (223)
++++|...+++..+. .. . .....+..+...+...|++++|...+++.... +.+ ....++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888888888776654 11 1 12345667777788888888888887776532 100 0122356667777777
Q ss_pred CCHHHHHHHHHHHHh
Q 027412 146 GLMEEALYAFHCALD 160 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~ 160 (223)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 777777777766553
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.35 E-value=7.9e-12 Score=80.19 Aligned_cols=110 Identities=13% Similarity=-0.010 Sum_probs=70.6
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC
Q 027412 49 LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (223)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 128 (223)
.++++.... +.+...+..+...+.+.|++++|+..|++....++. +...|..+..++...|++++|...|+++...+
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344444332 114445566666677777777777777777666554 66666667777777777777777777776654
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 129 SPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
+.+...+..+..++...|++++|...|++..+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666666777777777777777777766654
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-10 Score=72.94 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
..+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 33444444444444444444444444433322 33344444444444444444444444444332 22333444444444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 027412 143 CKRGLMEEALYAFHCALD 160 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~ 160 (223)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444433
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.34 E-value=8.3e-10 Score=78.83 Aligned_cols=166 Identities=11% Similarity=0.067 Sum_probs=126.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcH-----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---cc--HHH
Q 027412 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS-----ITFTILIDAFCKEGRMDDATMMFSKMLEKGPK---AN--VVT 99 (223)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 99 (223)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++....... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 445667788999999999999988766433211 23445667778889999999999998764222 11 458
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHC--CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHH
Q 027412 100 YSCLIDGYFKSQNMKSAFDVYEEMCEN--NISP----NIVSYSILIDGLCKRGLMEEALYAFHCALDNH----LLP-DVV 168 (223)
Q Consensus 100 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 168 (223)
++.+...|...|++++|...++++.+. ..+. ...++..+..+|...|++++|...+++..+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 899999999999999999999998732 1111 12588999999999999999999999887431 111 267
Q ss_pred HHHHHHHHHHhcCCcchH-HHHHHHHHH
Q 027412 169 TYAILIRGYCKAGRPTEA-MQLYDSMLR 195 (223)
Q Consensus 169 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 195 (223)
+|..+..++...|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 889999999999999999 777877653
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.34 E-value=1.5e-10 Score=72.32 Aligned_cols=120 Identities=8% Similarity=0.005 Sum_probs=103.5
Q ss_pred CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHH
Q 027412 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (223)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (223)
+.+...+..+...+...|++++|...+++..+... .+..++..+..++...|++++|...+++..+..+. +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 34577899999999999999999999999987753 37888999999999999999999999999998765 78889999
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 027412 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG 146 (223)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (223)
..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999998864 455667777777776655
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.34 E-value=1.4e-10 Score=81.33 Aligned_cols=199 Identities=11% Similarity=-0.034 Sum_probs=150.8
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHH-------HHHHHhcCchhHHHHHHHHHHhC------------CCC----C
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTI-------ICGYCSLNRLDEAVQLFEKLTCV------------QLK----P 60 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~~----~ 60 (223)
..++.+.|.+.|.++.+..+. ....|..+ ..++.+.++..+++..+....+. |.- .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 468899999999999988533 57888888 57777777778877777776552 100 0
Q ss_pred ----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC--hhH
Q 027412 61 ----NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--IVS 134 (223)
Q Consensus 61 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 134 (223)
-....-.+...+...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0233445677888899999999999998876654 33 66667889999999999999998665532 121 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHH
Q 027412 135 YSILIDGLCKRGLMEEALYAFHCALDNHLLP--DVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 208 (223)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 208 (223)
+..+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++... .|+......|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 8889999999999999999999997543214 4457778889999999999999999999984 6664444444
No 124
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.33 E-value=3e-10 Score=94.22 Aligned_cols=143 Identities=12% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
+.+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|.+++...++....|.. .+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I--dt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--cHHHHHH
Confidence 455666666666666666666666543 24555556666666666666666666655544322222 2235555
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 027412 107 YFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEA 186 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 186 (223)
|++.+++++...+. . .++...+..+...|...|++++|..+|... ..|..++.++.+.|++++|
T Consensus 1177 YAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 55555555322221 1 234445555666666666777776666553 3566667777777777777
Q ss_pred HHHHHHH
Q 027412 187 MQLYDSM 193 (223)
Q Consensus 187 ~~~~~~~ 193 (223)
.+.+++.
T Consensus 1241 IEaarKA 1247 (1630)
T 1xi4_A 1241 VDGARKA 1247 (1630)
T ss_pred HHHHHHh
Confidence 7666655
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.33 E-value=2.5e-10 Score=70.34 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++....+. +..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 5678889999999999999999999998765 336788899999999999999999999999988765 77888999999
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 027412 107 YFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR 145 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (223)
+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999998864 55666777666666544
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.33 E-value=1.4e-10 Score=84.56 Aligned_cols=130 Identities=11% Similarity=-0.037 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--------------SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 92 (223)
...+..+...+.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..+++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566666666666666666666666665532221 3556666666666666666666666666665
Q ss_pred CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 027412 93 PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEA-LYAFHCA 158 (223)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 158 (223)
+. +...|..+..+|...|++++|...|+++.+.. +.+..++..+..++.+.|+++++ ...++.|
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 55566666666666666666666666666553 44555666666666666666655 3344444
No 127
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.32 E-value=9.4e-10 Score=78.64 Aligned_cols=185 Identities=10% Similarity=0.017 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH----Hhc---CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 027412 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGY----CSL---NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (223)
+++++++.++.+....++ +..+|+.-..++ ... +++++++.+++++.+..++ +..+|+.-.-++.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC
Confidence 455555555555444322 233333322222 222 4455555555555544322 4444544444444445544
Q ss_pred --HHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCC------hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH-
Q 027412 80 --DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN------MKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEE- 150 (223)
Q Consensus 80 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 150 (223)
++++.++++.+.++. |...|+.........+. ++++++.+++++..+ +-|...|+.+...+.+.|+...
T Consensus 162 ~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 162 DAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHH
Confidence 555555555555444 45555544444444444 455555555555443 4445555555555555444222
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 151 ALYAFHCALDNH--LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 151 a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+..+..++.+.+ -..++..+..++.++.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 333333333222 013455566666666666666666666666654
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.32 E-value=3.6e-11 Score=77.07 Aligned_cols=110 Identities=12% Similarity=-0.020 Sum_probs=69.9
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 027412 14 LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (223)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 93 (223)
.|+++.... +.+...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|+..|++....++
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344444432 12344566666667777777777777777665542 2566666667777777777777777777766655
Q ss_pred CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 94 KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
. +...+..+..++...|++++|...|++..+.
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 5566666777777777777777777766653
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.32 E-value=1.6e-10 Score=82.59 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=121.2
Q ss_pred ccccCHHHHHHHHHHHhhCCC-CcCH----HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHH
Q 027412 3 IKECHLDAALKLFGQLTDRGL-EPDI----ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-PN----SITFTILIDAF 72 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~ 72 (223)
...|++++|..++++...... .|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++.++.+|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 467999999999999887532 2222 23445777778888999999999999874322 22 34789999999
Q ss_pred HhcCChhHHHHHHHHHHhc-----CCC-ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC----CCCC-ChhHHHHHHHH
Q 027412 73 CKEGRMDDATMMFSKMLEK-----GPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NISP-NIVSYSILIDG 141 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~ 141 (223)
...|++++|+..+++..+. +.. ....++..+..+|.+.|++++|...+++..+. +..+ -..++..+..+
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 245 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC 245 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 9999999999999998742 111 12347888999999999999999999988753 2112 25688999999
Q ss_pred HHhcCC-HHHHHHHHHHHHh
Q 027412 142 LCKRGL-MEEALYAFHCALD 160 (223)
Q Consensus 142 ~~~~~~-~~~a~~~~~~~~~ 160 (223)
+.+.|+ +++|.+.+++...
T Consensus 246 ~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 246 LRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHH
Confidence 999994 6999999988763
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.31 E-value=1.3e-10 Score=72.27 Aligned_cols=120 Identities=16% Similarity=0.074 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
+...+..+...+...|++++|...+++...... .+...+..+..++...|++++|...+++.....+. +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 466788889999999999999999999987653 36788899999999999999999999999988765 6888999999
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLM 148 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 148 (223)
++...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998874 55778888888888887764
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.31 E-value=1.4e-10 Score=84.45 Aligned_cols=152 Identities=17% Similarity=0.098 Sum_probs=125.7
Q ss_pred cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc--------------HHHHHHHHH
Q 027412 40 LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--------------VVTYSCLID 105 (223)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 105 (223)
.+++++|...++...+.. +.+...+..+...+.+.|++++|+..|++..+..+... ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344556665555443321 11466888999999999999999999999999876632 588999999
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE 185 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 185 (223)
++.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|+++++..+ .+...+..+..++...|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 67889999999999999999999999999998766 477889999999999999998
Q ss_pred H-HHHHHHHH
Q 027412 186 A-MQLYDSML 194 (223)
Q Consensus 186 a-~~~~~~~~ 194 (223)
+ ...++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8 45666665
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.31 E-value=1.1e-10 Score=78.41 Aligned_cols=158 Identities=13% Similarity=-0.059 Sum_probs=119.1
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCccHHHHHHHHHHHHhhCC
Q 027412 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK----G-PKANVVTYSCLIDGYFKSQN 112 (223)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~ 112 (223)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++.... + ......++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999996655543 22346778999999999999999999999988762 1 12245678889999999999
Q ss_pred hhHHHHHHHHHHHC----CCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcC
Q 027412 113 MKSAFDVYEEMCEN----NIS--PNIVSYSILIDGLCKRGLMEEALYAFHCALDN---HLLPD--VVTYAILIRGYCKAG 181 (223)
Q Consensus 113 ~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g 181 (223)
+++|...+++.... +-. .....+..+...+...|++++|...+++..+. ...+. ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999988753 211 12456788899999999999999999987742 11111 334678889999999
Q ss_pred CcchHHHHHHHHHHC
Q 027412 182 RPTEAMQLYDSMLRN 196 (223)
Q Consensus 182 ~~~~a~~~~~~~~~~ 196 (223)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.30 E-value=7.4e-10 Score=79.08 Aligned_cols=158 Identities=11% Similarity=-0.004 Sum_probs=120.4
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC---CCc--HHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPD-----IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL---KPN--SITFTILIDA 71 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~ 71 (223)
+...|++++|++.++...+.....+ ...+..+...+...|++++|...+++..+... .+. ..+++.+...
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3567899999999998876532211 12344566777888999999999999875431 112 4588999999
Q ss_pred HHhcCChhHHHHHHHHHHh---cCCC-c--cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC----CCC-ChhHHHHHHH
Q 027412 72 FCKEGRMDDATMMFSKMLE---KGPK-A--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN----ISP-NIVSYSILID 140 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~ 140 (223)
|...|++++|...+++... ..+. + ...++..+..+|...|++++|...+++..+.. ... -..++..+..
T Consensus 165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 2qfc_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999873 3222 1 22588899999999999999999999987532 111 1568899999
Q ss_pred HHHhcCCHHHH-HHHHHHHH
Q 027412 141 GLCKRGLMEEA-LYAFHCAL 159 (223)
Q Consensus 141 ~~~~~~~~~~a-~~~~~~~~ 159 (223)
+|.+.|++++| ...+++..
T Consensus 245 ~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 245 CLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHH
Confidence 99999999999 77777665
No 134
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=1.3e-09 Score=77.50 Aligned_cols=167 Identities=11% Similarity=0.088 Sum_probs=121.8
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 46 AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
++..+++..+.+ .++..++..+..++...|++++|++++.+.+..++ .-+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566665544 44566667899999999999999999999877765 2377888889999999999999999999998
Q ss_pred HCCCCC-----ChhHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 125 ENNISP-----NIVSYSILIDGL--CKRG--LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 125 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+. .| +..+...++.++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 356666676663 3334 8999999999987654 4433334444489999999999999997765
Q ss_pred C-----CC---CCc-hhhHHHHhhhHhhcCC
Q 027412 196 N-----GI---MPD-GLLLSTLADYNLQSSG 217 (223)
Q Consensus 196 ~-----~~---~p~-~~~~~~l~~~~~~~~~ 217 (223)
. .. .|+ +.++..++......|+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 2 11 244 4455455555554443
No 135
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.29 E-value=5.1e-10 Score=92.89 Aligned_cols=188 Identities=15% Similarity=0.144 Sum_probs=130.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|++.|.+. .+...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.
T Consensus 1115 ql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH
Confidence 45678999999999663 377788999999999999999999999877654 3333334588888888887754
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
..++ . .++...|..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++..+.
T Consensus 1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 4332 1 234556667888888888888888888774 36777888888888888888777655321
Q ss_pred C------------------------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhh
Q 027412 162 H------------------------LLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 214 (223)
Q Consensus 162 ~------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 214 (223)
. +..++..+..++..|...|.+++|+.+++..+... .-....|.-+.-.+.+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 1 11244456677777888888888888887776432 2223344444444443
No 136
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.29 E-value=6.5e-11 Score=85.18 Aligned_cols=184 Identities=11% Similarity=0.010 Sum_probs=132.7
Q ss_pred cccccCHHHHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC---CCC--cHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR----GLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKP--NSITFTILIDA 71 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~ 71 (223)
|...|++++|+..|.+..+. +-.+ -..+|+.+..+|...|++++|+..|++..+.. -.+ ...++..+..+
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 125 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34568888888888876553 1111 14578899999999999999999999875431 122 24578889999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHHhhCChhHHHHHHHHHHHC----CCCCC-hhHHHHHHHH
Q 027412 72 FCKEGRMDDATMMFSKMLEKGPKA-----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NISPN-IVSYSILIDG 141 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~ 141 (223)
|.. |++++|+..|++.....+.. ...++..+..++...|++++|+..|++.... +..+. ...+..++.+
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~ 204 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLV 204 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 988 99999999999887653211 1467888999999999999999999998863 11111 2366777788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--C--HHHHHHHHHHHHhcCCcchHHH
Q 027412 142 LCKRGLMEEALYAFHCALDNHLLP--D--VVTYAILIRGYCKAGRPTEAMQ 188 (223)
Q Consensus 142 ~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~~a~~ 188 (223)
+...|++++|...|++.. ..+.. . ......++.++ ..|+.+.+..
T Consensus 205 ~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 205 QLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888999999999999988 54321 1 12344555555 5677766655
No 137
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.29 E-value=2e-09 Score=76.97 Aligned_cols=206 Identities=13% Similarity=-0.001 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--chhHHHHHHHHHHhCCCCCcHHHHHHHHHHH----Hhc---CCh
Q 027412 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN--RLDEAVQLFEKLTCVQLKPNSITFTILIDAF----CKE---GRM 78 (223)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 78 (223)
.++|+++++.++...+. +..+|+.--.++...+ ++++++.+++.+...+++ +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 36899999998887533 5667888888888888 999999999999887654 556666555555 445 789
Q ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChh--HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC------HHH
Q 027412 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK--SAFDVYEEMCENNISPNIVSYSILIDGLCKRGL------MEE 150 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 150 (223)
++++.+++++.+.+++ +..+|+.-..++.+.|.++ +++++++++.+.+ +-|...|+.-...+.+.+. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999999999887 9999999998999999988 9999999999886 6788889888888888777 899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHCC-C-CCchhhHHHHhhhHhhcCCC
Q 027412 151 ALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE-AMQLYDSMLRNG-I-MPDGLLLSTLADYNLQSSGS 218 (223)
Q Consensus 151 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~ 218 (223)
+++.+++++...+ -|...|+.+...+.+.|+... +..+..++.+.+ . ..++..+..+...+.+.|+.
T Consensus 205 El~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 205 ELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp HHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 9999999998877 588999999888888888554 555666665432 1 23456667777777765543
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.28 E-value=1.1e-11 Score=83.43 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=95.1
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc---------------HHH
Q 027412 35 CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN---------------VVT 99 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~ 99 (223)
......|+++++.+.++.-.... ......+..+...+...|++++|+..|++.....+... ...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444455555555544322111 11334566677777777888888888877776544311 267
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 027412 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCK 179 (223)
Q Consensus 100 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
|..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+..+ .+...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHH
Confidence 7778888888888888888888887764 55677888888888888888888888888877654 356677777777777
Q ss_pred cCCcchHH-HHHHHHHH
Q 027412 180 AGRPTEAM-QLYDSMLR 195 (223)
Q Consensus 180 ~g~~~~a~-~~~~~~~~ 195 (223)
.++.+++. ..+..+..
T Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77666665 44454444
No 139
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=2.5e-09 Score=81.08 Aligned_cols=173 Identities=14% Similarity=0.106 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC---chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc----CChhH
Q 027412 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN---RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE----GRMDD 80 (223)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 80 (223)
.+.+..+++..... ++..+..|..+|...| +.++|+.+|++..+.+ .++...+..+...|... +++++
T Consensus 161 ~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 161 LDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 34444444444332 2337778888888888 8888999998888877 34565556677777654 68888
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHH-H--HhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-----CHHHHH
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDG-Y--FKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG-----LMEEAL 152 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~ 152 (223)
|...|++.. . -++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 888888876 2 255666667766 4 46788889999998888766 6677777777777 45 888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCC
Q 027412 153 YAFHCALDNHLLPDVVTYAILIRGYCK----AGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 197 (223)
++|++.. . .+...+..+...|.. ..++++|..+|++..+.|
T Consensus 308 ~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 308 AHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 8888776 3 466777777777766 337888888888888765
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.27 E-value=4.5e-10 Score=69.72 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
.+..+...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|...+++..+.+ +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444444555555555555555555554443 44455555555555555555555555555443 333444555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 027412 144 KRGLMEEALYAFHCALD 160 (223)
Q Consensus 144 ~~~~~~~a~~~~~~~~~ 160 (223)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554443
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.27 E-value=2.6e-11 Score=86.17 Aligned_cols=185 Identities=12% Similarity=0.029 Sum_probs=114.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+..+ .+...+..+..++...|++++|
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 346778888888888877764 22677778888888888888888888888876643 2567777788888888888888
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
...|++..+.++. +...+...+....+. .+.... ........+.+......+... ..|++++|.+.++...+.
T Consensus 92 ~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~ 164 (281)
T 2c2l_A 92 IANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEG 164 (281)
T ss_dssp HHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTT
T ss_pred HHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhcc
Confidence 8888877765432 111111122222211 111111 112222334454544444332 368889999988888776
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHC
Q 027412 162 HLLPDVVTYAILIRGYCKA-GRPTEAMQLYDSMLRN 196 (223)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 196 (223)
.+ .+......+...+.+. +.+++|.++|.++.+.
T Consensus 165 ~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 165 HE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred cc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 43 2344444444444444 6688899999877653
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.26 E-value=5.3e-11 Score=75.70 Aligned_cols=99 Identities=13% Similarity=-0.044 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILID 140 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 140 (223)
+...+..+...+.+.|++++|...|++....++. +...|..+..++...|++++|...|+++...+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3445566677777778888888888777777665 67777777777778888888888887777764 556667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 027412 141 GLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~ 161 (223)
++...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777788888888777777654
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.26 E-value=1.6e-09 Score=65.93 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
..+..+...+...|++++|...+++.....+. +...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444555555555555555555555554433 44455555555555555555555555555442 33445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 027412 143 CKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~ 162 (223)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 55555555555555555443
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.25 E-value=1.4e-10 Score=73.74 Aligned_cols=110 Identities=11% Similarity=-0.002 Sum_probs=92.0
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 027412 14 LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (223)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 93 (223)
.|+++.... +.+...+..+...+.+.|++++|...|++.....+ .+...|..+..++...|++++|+..|++....++
T Consensus 6 ~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 6 TLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ---CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344444432 22456677888899999999999999999987754 3788899999999999999999999999999987
Q ss_pred CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 94 KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
. ++..+..+..++...|++++|...|++..+.
T Consensus 84 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 N-EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6 7888889999999999999999999999875
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.25 E-value=3.3e-11 Score=81.06 Aligned_cols=133 Identities=14% Similarity=0.007 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN---------------SITFTILIDAFCKEGRMDDATMMFSKMLE 90 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 90 (223)
....+..+...+...|++++|...|++..+...... ..++..+..++...|++++|+..+++..+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345677888899999999999999999987643211 27888899999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 027412 91 KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEAL-YAFHCALD 160 (223)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 160 (223)
..+. +...+..+..++...|++++|...|++..+.. +.+..++..+..++...++.+++. ..+..+..
T Consensus 117 ~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 IDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8765 78899999999999999999999999999874 567788888888888887777666 44544443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.23 E-value=6.7e-10 Score=68.95 Aligned_cols=113 Identities=16% Similarity=0.101 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIR 175 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 175 (223)
+...|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+..+ .+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 45678888999999999999999999999875 66789999999999999999999999999998775 46889999999
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCC------CchhhHHHHhhhH
Q 027412 176 GYCKAGRPTEAMQLYDSMLRNGIM------PDGLLLSTLADYN 212 (223)
Q Consensus 176 ~~~~~g~~~~a~~~~~~~~~~~~~------p~~~~~~~l~~~~ 212 (223)
++...|++++|...|++..+. . |+.......+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK--DAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh--CcccCCchhHHHHHHHHHHH
Confidence 999999999999999999874 4 6665555555443
No 147
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.22 E-value=1.9e-09 Score=85.14 Aligned_cols=205 Identities=10% Similarity=0.023 Sum_probs=132.6
Q ss_pred cccCHHHHH-HHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC---------CC------------c
Q 027412 4 KECHLDAAL-KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL---------KP------------N 61 (223)
Q Consensus 4 ~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~ 61 (223)
+.|+.++|. ++|++.... .+.+...|...+...-+.|++++|.++|+++..... .| .
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 345666775 778777664 234566677777777777888888888887764310 12 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh-CChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 027412 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS-QNMKSAFDVYEEMCENNISPNIVSYSILID 140 (223)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 140 (223)
..+|...+....+.|..+.|..+|.+.++..+......|...+..-.+. ++++.|..+|+...+. .+.+...+...+.
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence 2356666777677777888888888777651111233443333333333 4478888888877765 3556666677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhH
Q 027412 141 GLCKRGLMEEALYAFHCALDNHLL--PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 212 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 212 (223)
.....|+.+.|..+|++....... -....|...+..-...|+.+.+.++.+++.+. .|+......+++-|
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 777778888888888887765432 13456777777777778888888888888774 56655555555444
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.21 E-value=2.4e-09 Score=65.16 Aligned_cols=112 Identities=17% Similarity=0.107 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
....+..+...+...|++++|...+++.....+ .+...+..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 456788888999999999999999999987653 37788889999999999999999999999988765 7888899999
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISPNIVSYSILID 140 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 140 (223)
++...|++++|...+++..+.+ +.+...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 9999999999999999998864 445555554443
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.20 E-value=9.2e-10 Score=68.55 Aligned_cols=96 Identities=20% Similarity=0.240 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC--CCC----hhHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI--SPN----IVSYSI 137 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 137 (223)
++..++..+.+.|++++|+..|++.++..|. +...|..+..+|...|++++|+..+++.++.+. .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4555666666666666666666666665554 555666666666666666666666666554310 000 124445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 027412 138 LIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
+..++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555566666666666665554
No 150
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.19 E-value=1.5e-09 Score=82.21 Aligned_cols=122 Identities=11% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh----CChhHHHHHHHHHHHCCCCCChhHHH
Q 027412 64 TFTILIDAFCKEG---RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS----QNMKSAFDVYEEMCENNISPNIVSYS 136 (223)
Q Consensus 64 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 136 (223)
.+..|...|...| +.++|++.|++..+.++. +...+..+...|... +++++|..+|++.. . .+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 3344444444444 445555555555444433 333333344444333 34555555555544 1 2333444
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CcchHHHHHHHHH
Q 027412 137 ILIDG-L--CKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAG-----RPTEAMQLYDSML 194 (223)
Q Consensus 137 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~ 194 (223)
.+... + ...+++++|.++|++..+.| +...+..+...|. .| ++++|..+|++..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 44444 2 23455555555555554443 3344444444444 23 4555555554444
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.19 E-value=6.7e-10 Score=69.17 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 027412 97 VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL--PD----VVTY 170 (223)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 170 (223)
..++..+...+.+.|++++|+..|++.++.. |.+..+|..+..+|...|++++|++.+++.++..+. ++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567889999999999999999999999875 677889999999999999999999999998764321 11 2467
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHH
Q 027412 171 AILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 208 (223)
Q Consensus 171 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 208 (223)
..+..++...|++++|++.|++.++ ..|++.+...+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 8888999999999999999999987 46776655544
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.17 E-value=2e-09 Score=70.03 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
..+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++..+.+ +.+...+..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444444444444444444444444444333 34444444444444444444444444444432 33344444444444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 027412 143 CKRGLMEEALYAFHCALD 160 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~ 160 (223)
...|++++|...|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 444455555444444443
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.17 E-value=1.8e-09 Score=70.28 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=91.5
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
.+...+..+...+...|++++|+..|++..+.... +...|..+..+|...|++++|+..|++.++.++. +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 35678889999999999999999999999887533 7888999999999999999999999999998876 788999999
Q ss_pred HHHHhhCChhHHHHHHHHHHHCC
Q 027412 105 DGYFKSQNMKSAFDVYEEMCENN 127 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~ 127 (223)
.++...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999998764
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.16 E-value=1.4e-09 Score=67.47 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-------hhHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IVSYS 136 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~ 136 (223)
.+..+...+...|++++|...+++.....+. +...+..+..++...|++++|...++++.... +.+ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHH
Confidence 3444555555555555555555555554433 44455555555555555555555555554432 111 34455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 137 ILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
.+..++...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555555555555555555543
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.15 E-value=2.3e-09 Score=67.39 Aligned_cols=98 Identities=10% Similarity=-0.003 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
+...+..+...+...|++++|...|++.....+. +...+..+..++...|++++|...+++..+.++. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 3455555555566666666666666655544322 4455555555555566666666666555555444 4555555555
Q ss_pred HHHhhCChhHHHHHHHHHHH
Q 027412 106 GYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~ 125 (223)
++...|++++|...|+++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55556666666655555554
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=7e-09 Score=65.87 Aligned_cols=98 Identities=11% Similarity=-0.006 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN----SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (223)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|...+++..+..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 34555566666666666666666666665542 22 445555555666666666666666665555443 455555
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 102 CLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 102 ~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555666666666666666655554
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.15 E-value=3.8e-09 Score=66.31 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 027412 60 PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILI 139 (223)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 139 (223)
.+...+..+...+...|++++|...|++.....+. +...|..+..++...|++++|...+++..+.+ +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 35666777777777777777777777777776655 56677777777777777777777777777654 45566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 027412 140 DGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777776643
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.14 E-value=1.1e-09 Score=66.10 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 027412 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLP--DVVTYAILIRGYC 178 (223)
Q Consensus 101 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 178 (223)
..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.+++..+..+ . +...+..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHH
Confidence 333334444444444444444443332 22333344444444444444444444444443322 1 2334444444444
Q ss_pred hc-CCcchHHHHHHHHHH
Q 027412 179 KA-GRPTEAMQLYDSMLR 195 (223)
Q Consensus 179 ~~-g~~~~a~~~~~~~~~ 195 (223)
.. |++++|.+.+++..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 44 444444444444443
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1e-08 Score=76.98 Aligned_cols=194 Identities=11% Similarity=0.049 Sum_probs=142.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcC----------------HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CCcH--
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPD----------------IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNS-- 62 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-- 62 (223)
+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+..... .++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 4578999999999999887532211 13478899999999999999999998764321 1122
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--C---CCC
Q 027412 63 --ITFTILIDAFCKEGRMDDATMMFSKMLEK----GPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--N---ISP 130 (223)
Q Consensus 63 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~---~~~ 130 (223)
.+.+.+...+...|+++.+..+++..... +.. .-..++..+...+...|++++|..+++++... + -+.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 23444455555678999999998877643 222 23567888999999999999999999988743 1 112
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC-C--HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 131 NIVSYSILIDGLCKRGLMEEALYAFHCALDN---HLLP-D--VVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
...++..++..|...|++++|...+++.... ...| . ...+..+...+...|++++|...|.+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2457888999999999999999999887642 1112 1 24567777888899999999998887764
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=7.5e-09 Score=65.70 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHH
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN---VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSI 137 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 137 (223)
+...+..+...+...|++++|...|++..+..+. + ...+..+..++...|++++|...+++..+.. +.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 4566667777777777777777777777765443 2 5566667777777777777777777776653 445666667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 027412 138 LIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAIL 173 (223)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 173 (223)
+..++...|++++|...|++..+..+ .+...+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 139 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEP-KNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-SCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHH
Confidence 77777777777777777777665543 234444333
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.12 E-value=1.8e-09 Score=66.64 Aligned_cols=91 Identities=13% Similarity=0.038 Sum_probs=42.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL 147 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 147 (223)
+...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|+..|++..+.+ +.+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334444444444454444444444433 44444444444444445555544444444432 3334444444444444444
Q ss_pred HHHHHHHHHHHHh
Q 027412 148 MEEALYAFHCALD 160 (223)
Q Consensus 148 ~~~a~~~~~~~~~ 160 (223)
+++|...+++.++
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.12 E-value=7.8e-10 Score=78.56 Aligned_cols=146 Identities=10% Similarity=-0.024 Sum_probs=94.2
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC----CcHHHHHHHHHHHHhcCC
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK----PNSITFTILIDAFCKEGR 77 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 77 (223)
|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+..+. .....+..+ ...+.
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~-- 122 (281)
T 2c2l_A 48 YLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKK-- 122 (281)
T ss_dssp HHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHH--
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHH--
Confidence 567899999999999999875 336788999999999999999999999998765311 011122211 11111
Q ss_pred hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-CCHHHHHHHHH
Q 027412 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR-GLMEEALYAFH 156 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~ 156 (223)
... ..........+......+... ..|++++|.+.++...+.+ +.+......+...+.+. +.++++.++|.
T Consensus 123 ----~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 123 ----KRW-NSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp ----HHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 112222233344444444332 3689999999998887753 34444445555555554 67889999998
Q ss_pred HHHh
Q 027412 157 CALD 160 (223)
Q Consensus 157 ~~~~ 160 (223)
.+.+
T Consensus 195 ~a~~ 198 (281)
T 2c2l_A 195 QVDE 198 (281)
T ss_dssp HSSC
T ss_pred hhhc
Confidence 8765
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.10 E-value=2.9e-09 Score=64.19 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC--ChhHHHHH
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--NIVSYSIL 138 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 138 (223)
+...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 4566778899999999999999999999998766 77889999999999999999999999999874 55 68899999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhCCC
Q 027412 139 IDGLCKR-GLMEEALYAFHCALDNHL 163 (223)
Q Consensus 139 ~~~~~~~-~~~~~a~~~~~~~~~~~~ 163 (223)
..++... |++++|.+.+++.....+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999988765
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.10 E-value=2.4e-09 Score=81.60 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=76.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|+..+++..+..+. +..++..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 456677777777777776653 224667777777777777777777777777766432 566677777777777777777
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHH--HHhhCChhHHHHHHH
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDG--YFKSQNMKSAFDVYE 121 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 121 (223)
++.+++..+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777776554 44455555555 666777777777776
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.09 E-value=1.1e-07 Score=68.47 Aligned_cols=191 Identities=12% Similarity=0.028 Sum_probs=148.5
Q ss_pred ccCHH-HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCc----------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 027412 5 ECHLD-AALKLFGQLTDRGLEPDIITYNTIICGYCSLNR----------LDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73 (223)
Q Consensus 5 ~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (223)
.|.+. +|+++++.+...++. +..+|+.--.++...+. +++++.+++.+....++ +..+|+.-.-++.
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHh
Confidence 34444 789999999887533 45566655444444443 67899999999877644 8888888777777
Q ss_pred hcC--ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-----
Q 027412 74 KEG--RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN-MKSAFDVYEEMCENNISPNIVSYSILIDGLCKR----- 145 (223)
Q Consensus 74 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 145 (223)
..+ .+++++.+++++.+.++. |..+|+.-..+....|. ++++++.++++++.+ +-|..+|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 777 489999999999999887 89999998888888888 589999999999886 77888888887777765
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCcchHHHHHHHHHHCCCCCch
Q 027412 146 ---------GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA-----------GRPTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 146 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~ 202 (223)
+.++++++.+.......+ -|...|+.+-..+... +.++++++.++++.+ +.|+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred cccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 458899999999988776 4778887655555444 357789999999998 57775
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.09 E-value=3e-09 Score=66.00 Aligned_cols=114 Identities=14% Similarity=0.201 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--cc----HHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--AN----VVTY 100 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 100 (223)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.....+. ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4577888899999999999999999998765 336788889999999999999999999998886542 11 6788
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 101 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
..+..++...|++++|...|+++.+. .|+......+.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 88999999999999999999999885 456666655554443
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.08 E-value=4.9e-08 Score=70.74 Aligned_cols=171 Identities=15% Similarity=0.078 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-C-ChhHHHH
Q 027412 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE-G-RMDDATM 83 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 83 (223)
..++|+++++.+....+. +..+|+.--.++...| .+++++.+++.+....++ +..+|+.-..++.+. + ++++++.
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345677777777666432 4555666666666666 477777777777766544 666666666555555 5 6777777
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChh--------HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC-------H
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMK--------SAFDVYEEMCENNISPNIVSYSILIDGLCKRGL-------M 148 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 148 (223)
+++++.+.+++ |..+|+.-..+..+.+.++ ++++.++++.+.+ +-|..+|+.....+.+.+. +
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 77777776665 6667766666666655555 6777777777664 5566667666666666654 5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 149 EEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
+++++.+++++...+ -|...|+.+-..+.+.|+
T Consensus 225 ~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 666666666665554 355555555444444443
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.06 E-value=7.4e-09 Score=78.56 Aligned_cols=131 Identities=15% Similarity=-0.009 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--------------SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 92 (223)
...+..+...+.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44677777788888888888888888776532211 4667777777777888888888887777776
Q ss_pred CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 027412 93 PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALY-AFHCAL 159 (223)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 159 (223)
+. +...|..+..+|...|++++|...|+++.+.. +.+..++..+..++.+.++.+++.+ .+..|.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 66777777777778888888888887777754 4556677777777777777766653 344443
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.06 E-value=2e-09 Score=82.06 Aligned_cols=124 Identities=13% Similarity=0.119 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 027412 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (223)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (223)
+..+...+.+.|++++|.+.+++..+.... +..++..+..+|.+.|++++|+..+++..+..+. +..+|..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344555677899999999999999887533 6889999999999999999999999999998776 78899999999999
Q ss_pred hCChhHHHHHHHHHHHCCCCCChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 027412 110 SQNMKSAFDVYEEMCENNISPNIVSYSILIDG--LCKRGLMEEALYAFH 156 (223)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 156 (223)
.|++++|...++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999864 4556677777666 888999999999998
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.04 E-value=6.5e-09 Score=64.07 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (223)
.+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..|++..+.++. +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4566778889999999999999999887543 7888999999999999999999999999999877 7889999999999
Q ss_pred hhCChhHHHHHHHHHHHC
Q 027412 109 KSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~ 126 (223)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999999875
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.03 E-value=7.9e-09 Score=78.43 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc--------------HHHHHHHHHHH
Q 027412 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--------------VVTYSCLIDGY 107 (223)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 107 (223)
++++|...|+...+.. .-....+..+...+.+.|++++|...|++.++..+... ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544333221 11456788899999999999999999999998765522 57899999999
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 027412 108 FKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAM 187 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 187 (223)
.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++++..+ .+...+..+..++...++++++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 66788999999999999999999999999998765 36678888999999999888776
Q ss_pred H-HHHHHH
Q 027412 188 Q-LYDSML 194 (223)
Q Consensus 188 ~-~~~~~~ 194 (223)
+ .+..|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 445554
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.03 E-value=4.4e-08 Score=60.69 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=39.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHH
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGPKANV---VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN---IVSYSILIDGL 142 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 142 (223)
...+...|++++|...|++..+..+. +. ..+..+..++...|++++|...++++.... +.+ ..++..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 33444444444444444444443332 12 234444444444444444444444444432 222 33344444444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 027412 143 CKRGLMEEALYAFHCALD 160 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~ 160 (223)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 173
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.03 E-value=1.1e-07 Score=75.19 Aligned_cols=205 Identities=5% Similarity=-0.044 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHH-HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 027412 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV-QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87 (223)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (223)
+.+..+|++....- +.....|...+..+...|+.++|. .+|++..... +.+...|...+....+.|++++|..+|++
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44567788877653 447888999999899999999997 9999998643 44677787888888899999999999999
Q ss_pred HHhcCC---------Cc------------cHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhc
Q 027412 88 MLEKGP---------KA------------NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-NISPNIVSYSILIDGLCKR 145 (223)
Q Consensus 88 ~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 145 (223)
++...+ .| ...+|...+....+.|+.+.|..+|..+.+. + ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 886410 12 2347888888888999999999999999875 2 22344555444444444
Q ss_pred -CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC--chhhHHHHhhhHhhcCC
Q 027412 146 -GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMP--DGLLLSTLADYNLQSSG 217 (223)
Q Consensus 146 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~ 217 (223)
++.+.|.++|+..++.-+ .+...|...+......|+.+.|..+|++.+.....+ ....|...+..=.+.|.
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 458999999999987633 466777888888889999999999999998863221 22344444444344443
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.03 E-value=1.8e-07 Score=67.77 Aligned_cols=179 Identities=7% Similarity=-0.024 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 027412 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG-RMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108 (223)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (223)
++.+-....+.+..++|+++++++...++. +..+|+.-...+...| .+++++.+++.+...+++ +..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 333333444455667899999999988654 7778888888888888 599999999999999887 8899999888888
Q ss_pred hh-C-ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 027412 109 KS-Q-NMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLME--------EALYAFHCALDNHLLPDVVTYAILIRGYC 178 (223)
Q Consensus 109 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
.. + ++++++.+++++.+.+ +-+..+|+.-..++.+.|.++ ++++.++++.+.++ -|...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 87 7 8999999999999876 678888888777777777666 99999999998877 48889999888888
Q ss_pred hcCC-------cchHHHHHHHHHHCCCCCchhhHHHHhhhHhh
Q 027412 179 KAGR-------PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 214 (223)
Q Consensus 179 ~~g~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 214 (223)
+.++ ++++++.+++++. ..|+..+...-+..++.
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred hccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 8886 6788999988887 46665544444444433
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=1e-07 Score=74.19 Aligned_cols=171 Identities=8% Similarity=0.006 Sum_probs=137.9
Q ss_pred chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC
Q 027412 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR----------MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (223)
..++|++.++++...++. +..+|+.-..++...|+ +++++..++.+.+.+++ +..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 356789999999887644 67778777777777776 89999999999999888 8999999999999999
Q ss_pred --ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 027412 112 --NMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRG-LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA-------- 180 (223)
Q Consensus 112 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 180 (223)
++++++..++++.+.+ +-+..+|+.-..++.+.| .++++++.++++.+.++ -|...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccc
Confidence 6699999999999986 778899999998899999 89999999999998877 4888888887777664
Q ss_pred ------CCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcCCC
Q 027412 181 ------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 218 (223)
Q Consensus 181 ------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 218 (223)
+.++++++.++++.. +.|+........+.+...++.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 456889999998887 467655444444444444433
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.01 E-value=1.9e-08 Score=62.32 Aligned_cols=107 Identities=12% Similarity=0.008 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 027412 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---VSYSILIDGLCKRGLMEEALYAFHCALDNHLLPD---VVTYAIL 173 (223)
Q Consensus 100 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 173 (223)
+..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...+++..+..+. + ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 4457788899999999999999998864 3344 58888999999999999999999999886543 3 6778889
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhh
Q 027412 174 IRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 210 (223)
Q Consensus 174 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 210 (223)
..++...|++++|...|+++.+. .|+.........
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~ 117 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ--YPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTSHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCChHHHHHHH
Confidence 99999999999999999999985 566554444333
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.00 E-value=9.2e-09 Score=66.70 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 97 VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
...|..+..+|.+.|++++|+..++++++.+ +.+...|..+..++...|++++|...|++..+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3455556666666666666666666666543 4445566666666666666666666666655543
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.00 E-value=8.3e-09 Score=66.36 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC---c--cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC----CCC-ChhH
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPK---A--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN----ISP-NIVS 134 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~ 134 (223)
+..+...+...|++++|...+++....... + ...++..+...+...|++++|...+++..... .++ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444444455555555554444332110 0 01244445555555555555555555544320 000 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 135 YSILIDGLCKRGLMEEALYAFHCALDN----HL-LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+..+...+...|++++|.+.+++..+. +. ......+..+...+...|++++|...+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455555556666666666665554421 11 01123455566666666666666666666554
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.00 E-value=1.2e-08 Score=66.14 Aligned_cols=80 Identities=16% Similarity=0.055 Sum_probs=67.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchh-hHHHH
Q 027412 130 PNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGL-LLSTL 208 (223)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l 208 (223)
.+...|..+..+|.+.|++++|+..+++.++.++ .+...|..+..++...|++++|...|++.++ +.|+.. .....
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~ 137 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVARE 137 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 3456889999999999999999999999998775 4788999999999999999999999999998 467765 54444
Q ss_pred hhhH
Q 027412 209 ADYN 212 (223)
Q Consensus 209 ~~~~ 212 (223)
+..+
T Consensus 138 l~~~ 141 (162)
T 3rkv_A 138 MKIV 141 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.00 E-value=1.1e-08 Score=75.44 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh----------------cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLE----------------KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 127 (223)
.+..+...+.+.|++++|+..|++.++ ..+. +..+|..+..+|.+.|++++|...++++++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-ALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 455666667777777777777776665 2222 45667777777888888888888888877764
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 027412 128 ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQ 188 (223)
Q Consensus 128 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 188 (223)
+.+...+..+..+|...|++++|.+.|+++.+..+ .+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888888888887776654 256666666666666666555543
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.00 E-value=2.4e-08 Score=70.09 Aligned_cols=141 Identities=9% Similarity=-0.090 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc--HHHHHHHHH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--VVTYSCLID 105 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 105 (223)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 345567788999999999999999987654 443366677888999999999999998654432 221 346778999
Q ss_pred HHHhhCChhHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 027412 106 GYFKSQNMKSAFDVYEEMCENNISP--NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAIL 173 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 173 (223)
++...|++++|+..|++.......| ..........++.+.|+.++|...|+++...++ +...+..|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~~~~~~aL 247 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--EPKVAAAL 247 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--CHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cHHHHHHH
Confidence 9999999999999999998543314 345778888999999999999999999998764 44444443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.99 E-value=1.4e-08 Score=74.96 Aligned_cols=125 Identities=11% Similarity=-0.017 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhC---------------CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCV---------------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 91 (223)
...+..+...+.+.|++++|+..|++..+. ..+.+..+|..+..+|.+.|++++|+..+++.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345778888999999999999999998761 11224578889999999999999999999999998
Q ss_pred CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 027412 92 GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALY 153 (223)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 153 (223)
.+. +...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 303 ~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 78899999999999999999999999999874 5577788888888888887777654
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.99 E-value=3.1e-09 Score=65.07 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=37.3
Q ss_pred CchhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHH
Q 027412 41 NRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118 (223)
Q Consensus 41 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 118 (223)
|++++|+..|++..+.+ -+.+..++..+..+|...|++++|+..|++..+..+. +..++..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444332 0112334444444455555555555555555444443 34444444455555555555555
Q ss_pred HHHHHHH
Q 027412 119 VYEEMCE 125 (223)
Q Consensus 119 ~~~~~~~ 125 (223)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=8.9e-08 Score=74.48 Aligned_cols=173 Identities=12% Similarity=-0.002 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCc----------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-
Q 027412 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR----------LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG- 76 (223)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 76 (223)
-++|++.++.+....+. +..+|+.--.++...|+ ++++++.++.+.+..++ +..+|+.-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 35678999998887533 56678777777777777 89999999999988755 8888988888888889
Q ss_pred -ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---------
Q 027412 77 -RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-NMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR--------- 145 (223)
Q Consensus 77 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 145 (223)
++++++..++++.+.++. +..+|+.-..+..+.| .++++++.++++++.+ +-+..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999999887 8999999998999999 8999999999999876 67888998888887764
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 027412 146 -----GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTE 185 (223)
Q Consensus 146 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 185 (223)
+.++++++.++++....+ -+...|..+-..+...+++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 567999999999988776 477888888888877777554
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.97 E-value=9.1e-09 Score=66.16 Aligned_cols=134 Identities=15% Similarity=0.082 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC---CC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----cc
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL---KP--NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK-----AN 96 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 96 (223)
..++..+...+...|++++|...+++..+... .+ ...++..+...+...|++++|...+++....... ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999998865421 11 1247888999999999999999999987764211 12
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHC----CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 97 VVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NIS-PNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
...+..+..++...|++++|...+++.... +.+ ....++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788899999999999999999988743 111 1245678889999999999999999988764
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.96 E-value=4.5e-09 Score=76.60 Aligned_cols=148 Identities=13% Similarity=0.046 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (223)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ ....|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34555556666666666666666666543 222221 11112222222111 113677788888
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCcchH
Q 027412 108 FKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRG-YCKAGRPTEA 186 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 186 (223)
.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++..+..+ .+...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888764 55677888888888888888888888888876554 244555555554 3345667777
Q ss_pred HHHHHHHHHC
Q 027412 187 MQLYDSMLRN 196 (223)
Q Consensus 187 ~~~~~~~~~~ 196 (223)
..+|.++...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887763
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.94 E-value=1.2e-06 Score=63.20 Aligned_cols=189 Identities=7% Similarity=-0.022 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hhHHHHH
Q 027412 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN--RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR-MDDATMM 84 (223)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 84 (223)
+++++.+++.+....++ +..+|+.-..++...+ .+++++.+++++.+..+. +..+|+.-..+....|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 68899999999887644 7888888888888888 489999999999988754 88888888888888888 5899999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhh--------------CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-----
Q 027412 85 FSKMLEKGPKANVVTYSCLIDGYFKS--------------QNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKR----- 145 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 145 (223)
+++++..++. |..+|+.....+... +.++++++.+.+..... |-|..+|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 9999999887 888998887777766 45788999999999875 77888887666666555
Q ss_pred ------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCcchHHHHHHHHHHCCCCCchh
Q 027412 146 ------GLMEEALYAFHCALDNHLLPDVVTYAILIRG---YCKAGRPTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 146 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~p~~~ 203 (223)
+.++++++.++++.+..+. +...+..++.. ....|..+++...+.++.+ +.|-..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~ 309 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRA 309 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchh
Confidence 4588999999999886652 33333333222 2245777889999999987 566654
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.93 E-value=4.8e-09 Score=64.19 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=54.4
Q ss_pred cCChhHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 027412 75 EGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
.|++++|+..|++..+.++ +.+...+..+..++...|++++|...|+++.+.. |.+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4666777777777766531 1245566667777777777777777777776654 445666666777777777777777
Q ss_pred HHHHHHHhCC
Q 027412 153 YAFHCALDNH 162 (223)
Q Consensus 153 ~~~~~~~~~~ 162 (223)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 7777666543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.92 E-value=9.3e-09 Score=74.95 Aligned_cols=126 Identities=10% Similarity=0.000 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGL 142 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (223)
..+..+...+.+.|++++|...|++.....+ +... +...++++++...+ ....|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 3455666677777777777777777766533 2211 12223333332222 123788999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhh
Q 027412 143 CKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 210 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 210 (223)
.+.|++++|+..+++.++..+ .+...|..+..++...|++++|...|++..+ +.|+.......+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~ 305 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELR 305 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHH
Confidence 999999999999999998765 4788999999999999999999999999887 4666544443333
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.85 E-value=1.3e-07 Score=60.40 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-----------cHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-------
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKA-----------NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN------- 126 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 126 (223)
+......+.+.|++++|+..|++.++..+.. +...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445555555666666666666665544331 1225666666666666666666666666553
Q ss_pred CCCCChhHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 127 NISPNIVSY----SILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 127 ~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
+ |.+...| .....++...|++++|+..|++.++
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 2334455 5566666666666666666665543
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.82 E-value=2e-07 Score=59.53 Aligned_cols=99 Identities=11% Similarity=-0.025 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC------c-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP------N-----SITFTILIDAFCKEGRMDDATMMFSKMLEK---- 91 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 91 (223)
...+......+.+.|++++|+..|++..+..+.. + ...|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3456677788889999999999999998764331 2 238999999999999999999999999988
Q ss_pred ---CCCccHHHH----HHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 92 ---GPKANVVTY----SCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 92 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
++. +...| .....++...|++++|+..|++..+.
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 776 77788 89999999999999999999999864
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.79 E-value=5.7e-07 Score=67.49 Aligned_cols=164 Identities=12% Similarity=-0.009 Sum_probs=121.9
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCc----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-c
Q 027412 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPN----------------SITFTILIDAFCKEGRMDDATMMFSKMLEKGPK-A 95 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 95 (223)
-...+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+.+..+...-.. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567889999999999999987642211 134778999999999999999999887653211 1
Q ss_pred cH----HHHHHHHHHHHhhCChhHHHHHHHHHHHC----CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 027412 96 NV----VTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NIS-PNIVSYSILIDGLCKRGLMEEALYAFHCALDN--HL- 163 (223)
Q Consensus 96 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 163 (223)
+. .+.+.+...+...|+++.+..+++..... +.. .-..++..++..+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 23444555566778999999999887642 222 23457888999999999999999999987642 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 164 --LPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 164 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
......+..++..|...|++++|..++++....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 123467889999999999999999999988753
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.75 E-value=8.9e-07 Score=55.73 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=22.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 027412 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EGRMDDATMMFSKMLE 90 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 90 (223)
|...|...+.+++|.++|++..+.+ ++..+..|...|.. .+++++|.+.|++..+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 89 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc
Confidence 3333333334444444444444332 33333334444443 3444444444444433
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=9.3e-07 Score=55.65 Aligned_cols=113 Identities=18% Similarity=0.060 Sum_probs=97.0
Q ss_pred cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----hCChhH
Q 027412 40 LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKS 115 (223)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 115 (223)
.+++++|..+|++..+.+ .|+.. |...|...+.+++|.+.|++..+.+ +...+..|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357889999999999887 33433 7788878888999999999998875 66788889999988 899999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 027412 116 AFDVYEEMCENNISPNIVSYSILIDGLCK----RGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 163 (223)
|..+|++..+.| ++..+..+...|.. .+++++|.++|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999999876 67788999999998 8999999999999998864
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.72 E-value=2.9e-07 Score=70.15 Aligned_cols=121 Identities=7% Similarity=-0.025 Sum_probs=53.5
Q ss_pred hcCchhHHHHHHHHHHhC-----CC-CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCC-c-cHHHHHHHH
Q 027412 39 SLNRLDEAVQLFEKLTCV-----QL-KP-NSITFTILIDAFCKEGRMDDATMMFSKMLEK-----GPK-A-NVVTYSCLI 104 (223)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~ 104 (223)
..|++++|+.++++..+. |. .| ...+++.|...|...|++++|+.++++.+.. |+. | ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555555544322 10 11 1234555555555555555555555544331 111 1 223445555
Q ss_pred HHHHhhCChhHHHHHHHHHHHC-----C--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 105 DGYFKSQNMKSAFDVYEEMCEN-----N--ISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
..|...|++++|..++++.... | -+....+.+.+..++...+.+++|..++.+++
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544321 1 01112233344444444555555555555443
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.71 E-value=1.1e-07 Score=57.69 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 46 AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
++..|++..+..+ .+...+..+..++...|++++|+..|++..+..+. +...|..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444443332 23444444555555555555555555555444433 34444444455555555555555554444
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.71 E-value=4.6e-07 Score=52.22 Aligned_cols=61 Identities=28% Similarity=0.483 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
.+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444444444444444444443332 333444444444444444444444444443
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.71 E-value=2e-07 Score=71.08 Aligned_cols=126 Identities=13% Similarity=-0.039 Sum_probs=98.0
Q ss_pred HHHhcCChhHHHHHHHHHHhc-----CCC-c-cHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-----C--CCCChhHHH
Q 027412 71 AFCKEGRMDDATMMFSKMLEK-----GPK-A-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-----N--ISPNIVSYS 136 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 136 (223)
.+...|++++|+.++++.+.. |+. | ...+++.|..+|...|++++|..++++.+.. | -+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887763 221 1 3568999999999999999999999987642 2 122345789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 137 ILIDGLCKRGLMEEALYAFHCALD-----NHLL-PD-VVTYAILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
.|...|...|++++|..++++.++ .|.. |+ ..+...+..++...+.+++|..++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998874 3432 22 345577778888999999999999998864
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.70 E-value=3.3e-07 Score=55.01 Aligned_cols=90 Identities=17% Similarity=0.075 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHH
Q 027412 97 VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPD------VVTY 170 (223)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 170 (223)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+..+. + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 3445555555555566666666655555543 344555555555666666666666666655554321 1 3344
Q ss_pred HHHHHHHHhcCCcchHHH
Q 027412 171 AILIRGYCKAGRPTEAMQ 188 (223)
Q Consensus 171 ~~l~~~~~~~g~~~~a~~ 188 (223)
..+..++...|+++.|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 445555555555554443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.5e-07 Score=56.48 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
+...+..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|...+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444555555666666666666666666555444 4555555666666666666666666666554
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.66 E-value=6e-07 Score=54.44 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 027412 10 AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (223)
Q Consensus 10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (223)
.|+..|++..+.. +.+...+..+..++...|++++|...|++..+..+ .+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555566655543 22455666666666666666666666666655432 245556666666666666666666666655
Q ss_pred hc
Q 027412 90 EK 91 (223)
Q Consensus 90 ~~ 91 (223)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.65 E-value=2.9e-07 Score=58.72 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC-----------ChhHHHHHHHHHHHC
Q 027412 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-----------NMKSAFDVYEEMCEN 126 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~ 126 (223)
+++|+..|++.++.+|. +..+|..+..+|...| ++++|...|+++.+.
T Consensus 62 ~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 34666666666666555 5556666666666553 666666666666663
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.65 E-value=8.2e-07 Score=51.13 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIR 175 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 175 (223)
+...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+..+ .+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45567777777888888888888888877654 45667777777888888888888888887776554 35566666665
Q ss_pred HHHhc
Q 027412 176 GYCKA 180 (223)
Q Consensus 176 ~~~~~ 180 (223)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.60 E-value=3.4e-07 Score=58.39 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=69.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCCh----------hHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM----------KSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
+.+.+++|.+.+++..+.+|. +...|..+..++...+++ ++|+..|++.++.+ |.+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 345677777777777777766 777777777777777654 58999999998875 567788999999998
Q ss_pred hcC-----------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 027412 144 KRG-----------LMEEALYAFHCALDNHLLPDVVTYA 171 (223)
Q Consensus 144 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~ 171 (223)
..| ++++|++.|++.++.+ |+...|.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~ 128 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYL 128 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHH
Confidence 774 7888888888887765 4444443
No 205
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.55 E-value=4.9e-05 Score=58.26 Aligned_cols=176 Identities=9% Similarity=-0.020 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHH-------------------------
Q 027412 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI------------------------- 63 (223)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------- 63 (223)
+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+..
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 44566777766643 335667777777777777777777777776655 22221
Q ss_pred ---------------HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHCC
Q 027412 64 ---------------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-NMKSAFDVYEEMCENN 127 (223)
Q Consensus 64 ---------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 127 (223)
+|...+....+.+..+.|..+|++. .. +..+...|...+..-...+ +.+.|..+|+...+.-
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 2222333333455667777777776 21 2223344433232222223 5777777777776642
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 128 ISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 128 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
+.++..+...+....+.|+.+.|..+|+++. .+...|...+..-...|+.+.+..++++..+
T Consensus 351 -~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 -PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334455556666667777777777777662 2466677666666667777777777776663
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.39 E-value=4.2e-06 Score=49.37 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
...+..+..+|...|++++|+..|++..+.++. +...|..+..+|...|++++|...+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444455555555555555554444433 34444444555555555555555544444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.38 E-value=2.3e-06 Score=50.53 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
+...+..+..++...|++++|...|+++.+.+ +.+...|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777788888888888888888877764 55566777788888888888888887777664
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.38 E-value=0.00012 Score=53.29 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=93.5
Q ss_pred CCcHHHHHHHHHHHH--hcC---ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh---C-C----hhHHHHHHHHHHH
Q 027412 59 KPNSITFTILIDAFC--KEG---RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS---Q-N----MKSAFDVYEEMCE 125 (223)
Q Consensus 59 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~----~~~a~~~~~~~~~ 125 (223)
+.+...|...+++.. ..+ +..+|..+|++..+..|. ....|..+..+|... + . .......++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 335555555554433 222 346788888888887665 555555544444311 1 0 1111112221111
Q ss_pred -CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhh
Q 027412 126 -NNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLL 204 (223)
Q Consensus 126 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 204 (223)
...+.+..++..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.+++... +.|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 1125677788887777777899999999999888876 6777777888888888999999999988888 4777777
Q ss_pred HHHHhhh
Q 027412 205 LSTLADY 211 (223)
Q Consensus 205 ~~~l~~~ 211 (223)
|...-..
T Consensus 346 ~~~~~~l 352 (372)
T 3ly7_A 346 LYWIENG 352 (372)
T ss_dssp HHHHHHS
T ss_pred HHHHhCc
Confidence 6654443
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.24 E-value=3.8e-06 Score=49.24 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 70 DAFCKEGRMDDATMMFSKMLEKGPKANVV-TYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
..+...|++++|...+++..+..+. +.. .+..+..++...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3344445555555555555444433 333 4444455555555555555555554443
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.09 E-value=2.1e-05 Score=59.15 Aligned_cols=61 Identities=10% Similarity=-0.095 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHC-----C-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCEN-----N-ISP-NIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+++.|..+|...|++++|..++++.+.. | -.| ...+++.+...|..+|++++|..++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4444555555555555555554444321 1 011 12234444445555555555554444443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.09 E-value=0.0002 Score=52.21 Aligned_cols=142 Identities=9% Similarity=0.009 Sum_probs=96.9
Q ss_pred CcCHHHHHHHHHHHHh--c---CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---cC-Ch-hHH---HHHHHHHH-
Q 027412 24 EPDIITYNTIICGYCS--L---NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK---EG-RM-DDA---TMMFSKML- 89 (223)
Q Consensus 24 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~~-~~a---~~~~~~~~- 89 (223)
+.+..+|...+++... . .+..+|..+|++..+..+. ....+..+..+|.. .+ .. ... ...++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4466777777765443 2 3457899999999987433 34555544444431 11 11 111 11222111
Q ss_pred -hcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 027412 90 -EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVV 168 (223)
Q Consensus 90 -~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 168 (223)
..+ +.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....+ |...
T Consensus 270 ~~~~-~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~ 344 (372)
T 3ly7_A 270 LPEL-NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGAN 344 (372)
T ss_dssp CGGG-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHH
T ss_pred cccC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcC
Confidence 122 3477888888888888899999999999999975 787888888999999999999999999998876 4555
Q ss_pred HHH
Q 027412 169 TYA 171 (223)
Q Consensus 169 ~~~ 171 (223)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 212
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.07 E-value=0.00061 Score=52.27 Aligned_cols=123 Identities=14% Similarity=0.014 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 027412 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE-GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108 (223)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (223)
|...+....+.+..+.|..+|++. .. ...+...|......-... ++.+.|..+|+...+..+. ++..|...+....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 334444444567889999999999 32 223445554333322223 4799999999999887554 4556777788888
Q ss_pred hhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 109 KSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.+++++..+
T Consensus 366 ~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 366 RIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999872 3577888888888888999999999888763
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.02 E-value=0.00015 Score=54.51 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=53.7
Q ss_pred HHhcCChhHHHHHHHHHHhc-----CCC--ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-----C--CCCChhHHHH
Q 027412 72 FCKEGRMDDATMMFSKMLEK-----GPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-----N--ISPNIVSYSI 137 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 137 (223)
+.+.|++++|+.++++.... |+. ....+++.++.+|...|++++|+.++++++.. | -+....+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556777777777666543 111 12346667777777777777777777766532 1 1112345677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 027412 138 LIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777777777777777665
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.02 E-value=0.00021 Score=41.38 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 61 NSITFTILIDAFCKEGR---MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
++..+..+..++...++ .++|..++++.++.++. ++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444432222 34555555555555444 4444454555555555555555555555543
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.01 E-value=5.1e-05 Score=57.03 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=68.0
Q ss_pred HhhCChhHHHHHHHHHHHCC---CCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHH
Q 027412 108 FKSQNMKSAFDVYEEMCENN---ISP----NIVSYSILIDGLCKRGLMEEALYAFHCALD-----NHL-LPD-VVTYAIL 173 (223)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l 173 (223)
.+.|++++|..++++..... +.| ...+++.++.+|...|++++|+.++++++. .|. .|+ ..+++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 35688999999999887531 122 245788999999999999999999998773 232 132 3568899
Q ss_pred HHHHHhcCCcchHHHHHHHHHH
Q 027412 174 IRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 174 ~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
...|...|++++|..++++..+
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999988774
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.00 E-value=7e-05 Score=47.31 Aligned_cols=84 Identities=15% Similarity=0.046 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC---ChhHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHHH
Q 027412 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ---NMKSAFDVYEEMCENNISP--NIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
...+.+.|.+....++ ++..+...+..++.+++ +.++++.+|+...+.+ .| ....+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555554 35666666666777666 4556777777766653 23 3455666666667777777777
Q ss_pred HHHHHHHhCCC
Q 027412 153 YAFHCALDNHL 163 (223)
Q Consensus 153 ~~~~~~~~~~~ 163 (223)
+.++.+++..|
T Consensus 92 ~y~~~lL~ieP 102 (152)
T 1pc2_A 92 KYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCC
Confidence 77777766543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.00 E-value=0.00016 Score=42.02 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=59.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC
Q 027412 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (223)
....+...|++++|...+++..+..+. +.. .+..+..++...|++++|...|++..+.++. +...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------H
Confidence 456677889999999999998876533 566 8888889999999999999999999888765 4444421 3
Q ss_pred ChhHHHHHHHHHH
Q 027412 112 NMKSAFDVYEEMC 124 (223)
Q Consensus 112 ~~~~a~~~~~~~~ 124 (223)
.+.++...+++..
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 4455555554443
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.00 E-value=3.6e-05 Score=57.82 Aligned_cols=87 Identities=8% Similarity=-0.073 Sum_probs=69.0
Q ss_pred hcCchhHHHHHHHHHHhC-----CC-CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCC-c-cHHHHHHHH
Q 027412 39 SLNRLDEAVQLFEKLTCV-----QL-KP-NSITFTILIDAFCKEGRMDDATMMFSKMLEK-----GPK-A-NVVTYSCLI 104 (223)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~ 104 (223)
..|++++|+.++++..+. |. .| ...+++.|..+|...|++++|+.++++.+.. |+. | ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999987652 21 12 2467899999999999999999999988753 322 2 345789999
Q ss_pred HHHHhhCChhHHHHHHHHHHH
Q 027412 105 DGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~ 125 (223)
..|...|++++|..+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.90 E-value=0.00026 Score=41.01 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHhhCC---hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027412 96 NVVTYSCLIDGYFKSQN---MKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHL 163 (223)
Q Consensus 96 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 163 (223)
++..+..+..++...++ .++|..++++....+ +.++.....+...+.+.|++++|+..|+++.+..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55566666666554443 566777777766654 55566666666667777777777777777666543
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.89 E-value=0.00077 Score=47.37 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCc
Q 027412 113 MKSAFDVYEEMCENNISPN---IVSYSILIDGLCKR-----GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA-GRP 183 (223)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 183 (223)
...|...+++..+.+ |+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 457888888888854 44 56888899999884 99999999999999877544577888888888884 999
Q ss_pred chHHHHHHHHHHCCCC--CchhhHHHH
Q 027412 184 TEAMQLYDSMLRNGIM--PDGLLLSTL 208 (223)
Q Consensus 184 ~~a~~~~~~~~~~~~~--p~~~~~~~l 208 (223)
+++.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999987655 665544443
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.86 E-value=0.00043 Score=40.96 Aligned_cols=69 Identities=14% Similarity=0.062 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (223)
+...+..|...+.+.+++..|..+|+...+.. ..+...++..+..++.+.|+++.|...+++..+..|.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 33444555555556666666666665554321 1123444555555555555555555555555554433
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.81 E-value=0.00068 Score=40.07 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKG------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
+..-+..|+..+.+.+++..|...|+...+.. ..+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34444556666666666666666665554431 1123445555555555666666666655555543
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.80 E-value=0.00067 Score=42.87 Aligned_cols=82 Identities=10% Similarity=0.098 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhhCChhHHHHH
Q 027412 44 DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG---RMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDV 119 (223)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 119 (223)
..+.+.|.+..+.+. ++..+...+..++++.+ +.++++.+++...+.+ +.-+...+-.+..++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 334444444444332 35555555555566555 4446666666665554 211233444455566666666666666
Q ss_pred HHHHHHC
Q 027412 120 YEEMCEN 126 (223)
Q Consensus 120 ~~~~~~~ 126 (223)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666653
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.71 E-value=0.0011 Score=53.90 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (223)
....++..+.+.|.++.|.++.+. |.. -.......|+++.|.++.+.+ .+...|..+...+.
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~-------~~~-----~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al 692 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPD-------QDQ-----KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCC-------HHH-----HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCCC-------cch-----heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHH
Confidence 346777777778888887765521 111 123345678888888876543 26788888999999
Q ss_pred hhCChhHHHHHHHHHH
Q 027412 109 KSQNMKSAFDVYEEMC 124 (223)
Q Consensus 109 ~~~~~~~a~~~~~~~~ 124 (223)
+.++++.|.++|.++.
T Consensus 693 ~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HTTCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHcc
Confidence 9999999999988764
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.65 E-value=0.0009 Score=47.02 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh-CChhHHHHHHHHHHHC
Q 027412 64 TFTILIDAFCKE-----GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS-QNMKSAFDVYEEMCEN 126 (223)
Q Consensus 64 ~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 126 (223)
.|..+...|.+. |+.++|.+.|++.++.++.-+..++......++.. |+.+++.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 444444444442 45555555555555444432244444444444442 4455555555555443
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.49 E-value=0.002 Score=39.21 Aligned_cols=82 Identities=15% Similarity=0.011 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhH---HHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHHH
Q 027412 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS---AFDVYEEMCENNISP--NIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
...+.+-|......+. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .......+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444433333 244444445555555544443 555555554432 12 2233444444555555555555
Q ss_pred HHHHHHHhC
Q 027412 153 YAFHCALDN 161 (223)
Q Consensus 153 ~~~~~~~~~ 161 (223)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555543
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.48 E-value=0.006 Score=49.52 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=71.1
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChh
Q 027412 35 CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (223)
......|+++.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...+...++.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHH
Confidence 3456789999999886543 3778999999999999999999999998732 234555555577777
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 115 SAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
....+-+.....| -++....+|.+.|++++|.+++.++
T Consensus 725 ~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 725 GLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6666665555543 2233444455666666666666543
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.013 Score=38.08 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=92.8
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChh
Q 027412 35 CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (223)
......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.. -+..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCHH
Confidence 3355689999999998775 378899999999999999999999998763 2355666777788888
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 115 SAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
....+-+.....| -++.....+...|+++++.++|.+. |.-| .. +......|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~--eA----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLP--LA----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHH--HH----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChH--HH----HHHHHHcCcHHHHHHHHHHh
Confidence 8777776666554 3455666677899999999998643 3212 11 11223456677777777665
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.014 Score=37.94 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=79.1
Q ss_pred cccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 567888888877654 3677888888888888888888888887752 3445556666777776665
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
+-+.....| -++.....+...|+++++.++|.+..+ .|. -.......|..+.|.++.+.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 555444433 234455566778888888888754322 111 111122245666677766654
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.26 E-value=0.013 Score=36.79 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 027412 111 QNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRG 176 (223)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (223)
++.++|.++|+.++..+-.. ...|......-.++|++.+|.+++.+.+..+++| ...+...++-
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 56666666666665432222 5555555555666666666666666666655543 3344444433
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.24 E-value=0.014 Score=36.67 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 027412 146 GLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 197 (223)
++.++|.++|+.+++.+-.. ...|...++--.+.|+.+.|.+++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432222 4445555555555555666666555555543
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.20 E-value=0.0099 Score=36.20 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH---HHHHHHHHHhcC-CCccHHHHHHHHHHHHhhCChhHH
Q 027412 41 NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD---ATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSA 116 (223)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a 116 (223)
.....+.+-|......+. ++..+-..+..++.+..+... ++.+++.+.+.+ +.......-.|..++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334445555555444342 455555556666666655444 667777766654 211333444466677777777777
Q ss_pred HHHHHHHHHC
Q 027412 117 FDVYEEMCEN 126 (223)
Q Consensus 117 ~~~~~~~~~~ 126 (223)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777764
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.011 Score=47.58 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHC------CCCC-C----
Q 027412 65 FTILIDAFCKEGR-MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN-MKSAFDVYEEMCEN------NISP-N---- 131 (223)
Q Consensus 65 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~---- 131 (223)
...++..+...++ .+.|..+|+++....+..+......++......++ --+|.+++.+..+. ..++ +
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555666 57799999998887654333233333333333332 22355555444321 1111 1
Q ss_pred ------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 132 ------IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 132 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
......=+..+...|+++-|+++-++....-+ -+..+|..|+.+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234556678999999999999887654 46889999999999999999999888876
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.021 Score=45.92 Aligned_cols=130 Identities=14% Similarity=0.069 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCc-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhc------C-CCcc---
Q 027412 29 TYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR-MDDATMMFSKMLEK------G-PKAN--- 96 (223)
Q Consensus 29 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~-~~~~--- 96 (223)
....++..+...++ .+.|..+++++....+..+......++..+...++ --+|.+++.+..+. . ...+
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34556666666666 58899999999876432232223333333333332 23455555554321 1 1111
Q ss_pred -------HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 97 -------VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 97 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
......-...+...|+++.|+.+-++..... |.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1123333566778999999999999998863 5667899999999999999999999998774
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.15 Score=38.56 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=120.1
Q ss_pred ccCHHHHHHHHHHHhhC-----CCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHH----HHhc
Q 027412 5 ECHLDAALKLFGQLTDR-----GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA----FCKE 75 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 75 (223)
.|+++.|++.+..+.+. +..-.......++..|...++|+...+.+..+........ .....+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcC
Confidence 47788898887666532 2334577788899999999999999888877754432322 222233332 2233
Q ss_pred CChhHH--HHHHHHHHhc--C-CCc---cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC-C----hhHHHHHHHHH
Q 027412 76 GRMDDA--TMMFSKMLEK--G-PKA---NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-N----IVSYSILIDGL 142 (223)
Q Consensus 76 ~~~~~a--~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~ 142 (223)
...+.. ..+.+..... | +-. .......|...+...|++.+|..++..+...-... + ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 333321 2222211111 1 000 12334568889999999999999999886321111 1 34667778889
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 143 CKRGLMEEALYAFHCALD----NHLLPD--VVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
...+++.+|..++.++.. ....|+ ...+...+..+...++|.+|.+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999988642 222232 23556777788888999999888887764
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.56 E-value=0.14 Score=37.93 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHH---hcCChhHHHHHHHHHHhc--CCC-ccH------------------HHHHHHHHHHHhhCChhHH
Q 027412 61 NSITFTILIDAFC---KEGRMDDATMMFSKMLEK--GPK-ANV------------------VTYSCLIDGYFKSQNMKSA 116 (223)
Q Consensus 61 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~--~~~-~~~------------------~~~~~l~~~~~~~~~~~~a 116 (223)
|...|..++.... ..|+.+.+...+.+.... |.. ++. .+...++..+...|+++++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4445555554332 357888888888877664 211 111 1223345566677888888
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 027412 117 FDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALD-----NHLLPDVVTYAIL 173 (223)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 173 (223)
...+..+.... |.+...+..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 88887777664 66777888888888888888888888877653 4777777654433
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.49 E-value=0.018 Score=42.69 Aligned_cols=112 Identities=12% Similarity=0.101 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHHH---hhCChhHHHHHHHHHHHC--CCC-CCh------------------hHHHHHHHHHHhcCCHHHH
Q 027412 96 NVVTYSCLIDGYF---KSQNMKSAFDVYEEMCEN--NIS-PNI------------------VSYSILIDGLCKRGLMEEA 151 (223)
Q Consensus 96 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~--~~~-~~~------------------~~~~~l~~~~~~~~~~~~a 151 (223)
|...|..++.... ..|+.+.+...+.++... |-. ++. .+...++..+...|+++++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4445555554332 357888888888887754 211 111 1224456677789999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH-----CCCCCchhhHHHH
Q 027412 152 LYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR-----NGIMPDGLLLSTL 208 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 208 (223)
...+..+....+ .+...+..++.++.+.|+..+|++.|+++.+ .|+.|+..+-...
T Consensus 191 ~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 191 IAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999999887766 5888999999999999999999999988764 3999988765443
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.25 E-value=0.48 Score=40.53 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC-----------------------CcHHHHHHHHHHHHhcCChhHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-----------------------PNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
++..--.+..++...|++++|.+.|++... ++. .-..-|..++..+.+.+.++.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 444445677889999999999999987631 110 01234677888888889999988
Q ss_pred HHHHHHHhcCCCcc----HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH----------
Q 027412 83 MMFSKMLEKGPKAN----VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLM---------- 148 (223)
Q Consensus 83 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------- 148 (223)
++-...++...+-+ ...|..+.+.+...|++++|...+-.+.... .-...+..++...+..|..
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~L~~lpf~g 997 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQLLNYSMPT 997 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHHHHHHTTTS
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhhhhCCCCcc
Confidence 88777665432212 2257888999999999999999988776543 3345666777766655544
Q ss_pred --HHHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCcchHHHH-HHHHH
Q 027412 149 --EEALYAFHCALD-N-HLLPDVVTYAILIRGYCKAGRPTEAMQL-YDSML 194 (223)
Q Consensus 149 --~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~ 194 (223)
+++.+++....+ . .+...+.-|..|-.-+...|++..|..+ |+.+.
T Consensus 998 l~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 998 LRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 344444432211 1 1111122345555556677787766654 44444
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.21 E-value=0.099 Score=32.33 Aligned_cols=68 Identities=13% Similarity=0.015 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 027412 131 NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIM 199 (223)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 199 (223)
+...+...+.....+|.-|+-.+++..+... ..|++...-.+..+|.+.|+..++.+++.++.+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455666677777788888887777775442 3367777777888888888888888888888877764
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.18 E-value=0.38 Score=41.12 Aligned_cols=146 Identities=12% Similarity=0.090 Sum_probs=97.7
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C---------------
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK----G--------------- 92 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--------------- 92 (223)
.++..+...+..+.+.++.... +.++.....++.++...|++++|.+.|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555666677777766654433 224444566888899999999999999764211 0
Q ss_pred ---CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 027412 93 ---PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----VSYSILIDGLCKRGLMEEALYAFHCALDNHLLP 165 (223)
Q Consensus 93 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 165 (223)
...-..-|..++..+.+.+.++.+.++-+.+++..-+.+. ..|..+...+...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 0001234677888888889999988888777654322222 25778889999999999999988877765443
Q ss_pred CHHHHHHHHHHHHhcCCcc
Q 027412 166 DVVTYAILIRGYCKAGRPT 184 (223)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~ 184 (223)
......++..++..|..+
T Consensus 971 -~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHH
T ss_pred -HHHHHHHHHHHHhCCChh
Confidence 455666777666665543
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.73 E-value=0.13 Score=29.79 Aligned_cols=44 Identities=5% Similarity=-0.011 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 116 AFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
..+-++.+...++-|++.+..+.+.+|.+.+++..|.++++-.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555555544443
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.55 E-value=0.21 Score=30.91 Aligned_cols=83 Identities=8% Similarity=-0.086 Sum_probs=62.4
Q ss_pred cCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 027412 75 EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYA 154 (223)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 154 (223)
+|+.......+-.+ ..+.......+......|.-++-.+++..+... .+|++...-.+..+|.+.|+..++.++
T Consensus 74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 45555555544332 125566777788888899999988888886554 378888899999999999999999999
Q ss_pred HHHHHhCCC
Q 027412 155 FHCALDNHL 163 (223)
Q Consensus 155 ~~~~~~~~~ 163 (223)
+.++-+.|.
T Consensus 148 l~~AC~kG~ 156 (172)
T 1wy6_A 148 LIEACKKGE 156 (172)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhh
Confidence 999988886
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.57 Score=35.26 Aligned_cols=97 Identities=13% Similarity=-0.003 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC-CCCChhHHH----
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPNIVSYS---- 136 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~---- 136 (223)
+...+...|.+.|+++.|.+.+.++... +...-...+-..++.+...+++..+...+.++...- -.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566888889999999999999988875 233345677778888999999999999888876321 112222221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 137 ILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
.-+..+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223456888888888777654
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.29 E-value=0.26 Score=30.25 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=35.9
Q ss_pred CccHHHHHHHHHHHHhhCCh---hHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 94 KANVVTYSCLIDGYFKSQNM---KSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
.|+..+--.+..++.++.+. .+++.+++.+.+.+.......+..+.-++.+.|+++.|.+..+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 34444444455555554433 3455556555554311224445555556666666666666666665543
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.13 E-value=0.3 Score=30.05 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 151 ALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 151 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
..+-++.+...+..|++......+++|.+.+++..|.++++-..
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555444
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.99 E-value=0.75 Score=38.24 Aligned_cols=123 Identities=13% Similarity=0.049 Sum_probs=52.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHH--HHHHHHHHhcC
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSY--SILIDGLCKRG 146 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 146 (223)
...+...|+.+....++..+.+.... +..-...+.-++...|+.+.+..+++.+.... .|....- ..+..+|+..|
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence 33344555555555555554432111 22222223333345566666666666655431 2222111 12333455556
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 147 LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
+.....+++..+.+.. ..+..-...+.-+++..|+.+.+.+++..+.
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 6555555555554431 1223333333333344455544444444333
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.80 E-value=0.4 Score=29.84 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHHHHhhCCh---hHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027412 95 ANVVTYSCLIDGYFKSQNM---KSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNH 162 (223)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 162 (223)
|+..+-..+..++.++.+. .+++.+++.+.+.+..........+.-++.+.|++++|.+..+.+++..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4444444455555554433 3455555555553311233344455555666666666666666665544
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.59 E-value=0.51 Score=30.20 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=26.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC-CCcc-------HHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKG-PKAN-------VVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
+..+...|.++.|+-+.+.+.... .+|+ ..++..+..++...+++..|...|++.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344445555555555544433321 1111 1234445555556666666666665543
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.31 E-value=0.51 Score=28.97 Aligned_cols=69 Identities=9% Similarity=-0.002 Sum_probs=43.0
Q ss_pred CCCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 58 LKPNSITFTILIDAFCKEGR---MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 58 ~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
..|++.+--.+.-++.+..+ ..+++.+++.+.+.++......+-.|..++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555555555555655544 3456677777766654333445555667777777777777777777764
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.27 E-value=0.41 Score=27.78 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 027412 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 91 (223)
+.-+..+-++.+......|++.+....+++|.+.+++..|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455566666666666677777777777777777777777777766555
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.14 E-value=2.2 Score=35.64 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=102.3
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHH--HHHHHHHHh
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY--SCLIDGYFK 109 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~ 109 (223)
.|..++...|+-+....++..+.+.. .-+..-.-.+.-++...|+.+.+..+++.+... ..|....- ..+.-+|+.
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcC
Confidence 33444556778777778877776532 212222333444455678999998888887763 33333322 234556778
Q ss_pred hCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc-chHHH
Q 027412 110 SQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRP-TEAMQ 188 (223)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~ 188 (223)
.|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|...--..+..+....|.. .++..
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 899888888998887642 3334433444445555677777777777666543 35555445555555555554 46788
Q ss_pred HHHHHHHCCCCCchhhHHHHh
Q 027412 189 LYDSMLRNGIMPDGLLLSTLA 209 (223)
Q Consensus 189 ~~~~~~~~~~~p~~~~~~~l~ 209 (223)
++..+.. .+|..+-..-+
T Consensus 651 ~L~~L~~---D~d~~Vrq~Ai 668 (963)
T 4ady_A 651 VLDPLTK---DPVDFVRQAAM 668 (963)
T ss_dssp HHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHcc---CCCHHHHHHHH
Confidence 8888865 44544443333
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=1.2 Score=33.59 Aligned_cols=97 Identities=8% Similarity=-0.075 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCccHHH--HH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK---GPKANVVT--YS 101 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 101 (223)
+...+...|.+.|+++.|.+.+.++.... ...-...+-.+++.+...+++..+...+.+.... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56788899999999999999999997642 3334567888899999999999999999887653 33333221 11
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHH
Q 027412 102 CLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 102 ~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
.-+..+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 223344567899998888877654
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.07 E-value=0.24 Score=34.44 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=35.3
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (223)
.+.|++++|++....-++.. +-|...-..++..+|-.|+|++|..-++...+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45677777777776666554 335666667777777777777777777666555
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.78 E-value=0.77 Score=32.00 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=69.3
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhhCC
Q 027412 35 CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--VVTYSCLIDGYFKSQN 112 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 112 (223)
....+.|++++++.....-++..+. |...-..++..+|-.|++++|.+-++...+..+... ...|..++.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~---- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ---- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH----
Confidence 3456678888888888877776533 777777888888888999988888888877655422 223444443311
Q ss_pred hhHHHHHHHHHHHCCCC-----CChhHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 027412 113 MKSAFDVYEEMCENNIS-----PNIVSYSILIDGLC--KRGLMEEALYAFHCALD 160 (223)
Q Consensus 113 ~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 160 (223)
.=.+...-+-. ....-...++.+.. ..|+.++|.++-..+.+
T Consensus 80 ------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 80 ------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11122221111 12223444444443 35788888777776654
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.77 E-value=0.8 Score=29.32 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHCC-CCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-
Q 027412 98 VTYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPN-------IVSYSILIDGLCKRGLMEEALYAFHCALDN------H- 162 (223)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 162 (223)
.++..-+..+...+.++.|+-+...+.... ..|+ ..++..+.+++...+++..|...|++.++. .
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555777888899999888887765321 1233 136778889999999999999999986421 0
Q ss_pred -----------------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 163 -----------------LLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 163 -----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
...+.+.---+..+|.+.+++++|+.+++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0011234445888999999999999987654
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.47 E-value=1.7 Score=32.26 Aligned_cols=166 Identities=10% Similarity=-0.021 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCC-CCC---cHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCccHHHH--
Q 027412 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKP---NSITFTILIDAFCKEG-RMDDATMMFSKMLEKGPKANVVTY-- 100 (223)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 100 (223)
.....|...|.+.|+.++..+++......= .-| .......++..+.... ..+.-.++..+..+.... .-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 456778888999999999888888764321 111 2334567777776643 334444444433321111 11222
Q ss_pred ----HHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHH
Q 027412 101 ----SCLIDGYFKSQNMKSAFDVYEEMCENNISPN-----IVSYSILIDGLCKRGLMEEALYAFHCALDN--HLLPDVVT 169 (223)
Q Consensus 101 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 169 (223)
.-++..|...|++.+|..++..+.+.=-..| ..++..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2578889999999999888888875311111 234566677788899999999888877532 22233332
Q ss_pred HH----HHHHHHH-hcCCcchHHHHHHHHH
Q 027412 170 YA----ILIRGYC-KAGRPTEAMQLYDSML 194 (223)
Q Consensus 170 ~~----~l~~~~~-~~g~~~~a~~~~~~~~ 194 (223)
.. .-...+. ..++|.+|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 21 1222345 7888999888887764
No 257
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.30 E-value=4.2e-06 Score=62.63 Aligned_cols=115 Identities=11% Similarity=0.127 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (223)
+.+|..|..+..+.+.+.+|++-|-+.. |+..|..++....+.|.+++-++++.-.++... ++..=+.|+.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 4456777777777776666665543321 444466677777777777777777664444322 33444567777
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 027412 107 YFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (223)
|++.++..+..+++ -.|+..-...+..-|...|.++.|.-+|.
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 77777766544333 13555555666666666666666665554
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.08 E-value=0.92 Score=27.94 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=41.2
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDG 141 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (223)
|..+..+-++.+...+..|++......+++|-+.+|+..|.++|+-.+.+ ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 34455556666666666777777777777777777777777777776644 23445556655544
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.40 E-value=1.6 Score=27.11 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 59 KPNSITFTILIDAFCKEGR---MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
.|+..+--...-++.+..+ ..+++.+++.+.+.++.......-.|..++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555556665544 3456667777666555434444445666777777777777777777774
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.30 E-value=1.3 Score=25.66 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=43.7
Q ss_pred CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHH
Q 027412 41 NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120 (223)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 120 (223)
...++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.. +.||...|..|. -.+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 355666666666655432 2212122233455667777776665544 456666665543 34666666666666
Q ss_pred HHHHHCC
Q 027412 121 EEMCENN 127 (223)
Q Consensus 121 ~~~~~~~ 127 (223)
..+...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666555
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.11 E-value=1.4 Score=25.59 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=44.3
Q ss_pred CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHH
Q 027412 41 NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120 (223)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 120 (223)
...++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.. +.||...|..|. -.+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 356666666666655432 2222222233455677777777666554 456666665553 34566666666666
Q ss_pred HHHHHCC
Q 027412 121 EEMCENN 127 (223)
Q Consensus 121 ~~~~~~~ 127 (223)
..+...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6666555
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=91.02 E-value=2.3 Score=28.17 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=42.3
Q ss_pred CChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 027412 111 QNMKSAFDVYEEMCENNISPN-IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDV 167 (223)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 167 (223)
+....+..+|..|...|+-.. ...|......+-..|++.+|.++|+..++.+-.|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 335688888888887765443 456777778888888888888888888887766643
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.89 E-value=6.1 Score=28.62 Aligned_cols=189 Identities=9% Similarity=0.004 Sum_probs=103.4
Q ss_pred cCHHHHHHHHHHHhhCCCC---c-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 6 CHLDAALKLFGQLTDRGLE---P-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
+.+++.+.-++.-++.|-- - -...|.++..-|.+.+++++|++++. .-...+.+.|+...+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~---------------~GA~~ll~~~Q~~sg 74 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILA---------------SVSQTLLRSGQGGSG 74 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------------HHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHH---------------HHHHHHHHCCCcchH
Confidence 4455555556555555421 1 13456666666667777777665531 234455566776655
Q ss_pred HHH----HHHHHhcCCCccHHHHHHHHHHHHhhCChh-HHHHHHHHHH----HCC--CCCChhHHHHHHHHHHhcCCHHH
Q 027412 82 TMM----FSKMLEKGPKANVVTYSCLIDGYFKSQNMK-SAFDVYEEMC----ENN--ISPNIVSYSILIDGLCKRGLMEE 150 (223)
Q Consensus 82 ~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~ 150 (223)
-++ ++-..+.+.+++......++..+.....-+ .=..+++.++ +.| -.-|+.....+...|.+.+++.+
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 544 455566678888888888888777655322 1122333332 212 23467778888899999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH-HCCCCCchhhHHHHhhhHh
Q 027412 151 ALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSML-RNGIMPDGLLLSTLADYNL 213 (223)
Q Consensus 151 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~ 213 (223)
|...|- .+-.++...+..++.-+...+...++--++-+.+ ..=..-+....+.++..|.
T Consensus 155 Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 155 AEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888772 2333454666544444444444443332222222 1111234455555555444
No 264
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=86.61 E-value=4.8 Score=26.10 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 91 (223)
.++.+...+.+.|+.++|+..+..--..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 4455556666667777777666554443
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.11 E-value=5.4 Score=26.20 Aligned_cols=183 Identities=10% Similarity=0.009 Sum_probs=111.8
Q ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 027412 11 ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90 (223)
Q Consensus 11 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 90 (223)
++..+-.... .++...-...+..+.+.+..+. ...+..+.. .++..+-...+.++.+.++.+ +...+..+..
T Consensus 20 ~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~ 91 (211)
T 3ltm_A 20 KVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK 91 (211)
T ss_dssp GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc
Confidence 3444444443 3567777777788888777444 444444443 346666667777777777654 3444444443
Q ss_pred cCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 027412 91 KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTY 170 (223)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 170 (223)
.++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|+.+ +...+..+.+. ++..+-
T Consensus 92 ---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr 160 (211)
T 3ltm_A 92 ---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVR 160 (211)
T ss_dssp ---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC---CCHHHH
Confidence 245566666777777777754 4444445543 467777788888888888754 45555555542 577777
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcC
Q 027412 171 AILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 216 (223)
Q Consensus 171 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 216 (223)
...+.++.+.+. .++...+.++.+ .++..+-...+.++.+.+
T Consensus 161 ~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 161 QSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcC
Confidence 778888888876 556677777766 345555555555554443
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.41 E-value=8.6 Score=27.87 Aligned_cols=174 Identities=9% Similarity=-0.030 Sum_probs=101.0
Q ss_pred ccccCH---HHHHHHHHHHhhCCC---CcC--HHHHHHHHHHHHhcCchhHHHHHH----HHHHhCCCCCcHHHHHHHHH
Q 027412 3 IKECHL---DAALKLFGQLTDRGL---EPD--IITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFTILID 70 (223)
Q Consensus 3 ~~~g~~---~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~ 70 (223)
+..|++ =+|.+.++.+..+-+ +.+ ......-...+.+.|+...+.++. +-..+.++++|......++.
T Consensus 23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356788 667777665433211 111 223334445677788887766655 45556678889988888888
Q ss_pred HHHhcCChh-HHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 71 AFCKEGRMD-DATMMFSKML----EKG--PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 71 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
.+.....-+ .=..++++++ +.| +.-++.....+...|.+.+++.+|...|- .|-.++...+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 887655322 1123333332 222 33467788889999999999999888872 232333456655554444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 144 KRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
..+...+ ++...-. .+--|.-.++...|..+++...+
T Consensus 179 ~~~~~~e--------------~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHT--------------APLYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGG--------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcc--------------HHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 4332111 1222222 23345666888888887766654
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=85.35 E-value=5.2 Score=25.23 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc
Q 027412 151 ALYAFHCALDNHLLP-DVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 151 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
+..+|..|...++-- -...|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 445555555444321 233445555555555555555555555555554443
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.32 E-value=6.3 Score=26.18 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC
Q 027412 59 KPNSITFTILIDAFCK--EGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (223)
Q Consensus 59 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 131 (223)
..|+......+...-. .+...++..+|..|...++.. -...|......+...|++++|..+|+..++.+-.|-
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4455544333332222 445779999999999886543 456788888999999999999999999998876774
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.87 E-value=11 Score=27.98 Aligned_cols=158 Identities=11% Similarity=-0.046 Sum_probs=86.4
Q ss_pred cccccCHHHHHHHHHHHhhC-CCC---cCHHHHHHHHHHHHhcC-chhHHHHHHHHH----HhCCCC-CcHHHHHHHHHH
Q 027412 2 LIKECHLDAALKLFGQLTDR-GLE---PDIITYNTIICGYCSLN-RLDEAVQLFEKL----TCVQLK-PNSITFTILIDA 71 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~ 71 (223)
|.+.|+.++..+++.....- +.- ........++..+.... ..+.-.++..+. ...... .....-..++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l 108 (394)
T 3txn_A 29 YKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIAL 108 (394)
T ss_dssp HHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777665432 101 12334566666666533 233333333333 222100 011122357788
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC-----ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCChhHHH----HHHH
Q 027412 72 FCKEGRMDDATMMFSKMLEKGPK-----ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--NISPNIVSYS----ILID 140 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~----~l~~ 140 (223)
|...|++.+|.+++.++.+.-.. .-...+..-+..|...+++.++...+...... .+.+++.+.. .-+.
T Consensus 109 ~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi 188 (394)
T 3txn_A 109 YFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGI 188 (394)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhH
Confidence 88888888888888877664111 12344566677788888888888888777532 2223333221 2233
Q ss_pred HHH-hcCCHHHHHHHHHHHH
Q 027412 141 GLC-KRGLMEEALYAFHCAL 159 (223)
Q Consensus 141 ~~~-~~~~~~~a~~~~~~~~ 159 (223)
.+. ..++|..|...|-+..
T Consensus 189 ~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 189 LHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 345 6788888877776654
No 270
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.40 E-value=0.0037 Score=47.38 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
|+..|..++....+.|.+++-+.++...++..- ++..=+.|+-+|++.++..+-++++. .||..-...+..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 455688888888899999998888876665432 33444568888888888766444331 234434444555
Q ss_pred HHHhhCChhHHHHHHH
Q 027412 106 GYFKSQNMKSAFDVYE 121 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~ 121 (223)
-|...|.++.|.-+|.
T Consensus 153 rcf~e~lYeAAKilys 168 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYN 168 (624)
T ss_dssp HHHHSCCSTTSSTTGG
T ss_pred HHHHccCHHHHHHHHH
Confidence 5555555555544443
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=83.13 E-value=12 Score=27.52 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHHCCCCCchh
Q 027412 134 SYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR--PTEAMQLYDSMLRNGIMPDGL 203 (223)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~ 203 (223)
....++.-|...|+.++|.+.++++....+ ....+...+..++-+.++ .+...+++..+.+.|+-+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 357778888888999999999988854222 123334444444444332 345777777777766554443
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=82.20 E-value=7.7 Score=24.81 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 027412 116 AFDVYEEMCENNISPN-IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDV 167 (223)
Q Consensus 116 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 167 (223)
...+|..|...|+-.. ...|......+-..|++.+|.++|...++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5556666665554332 334555555666666666666666666666555543
No 273
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=80.98 E-value=7.8 Score=24.08 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=34.7
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 17 QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|-.
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345566665543 233444444555 667777777777666555665555555666665543
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.82 E-value=6.2 Score=22.88 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 027412 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (223)
..++|..+-+.+...+. ...+-..=+..+.+.|++++|..+.+... .||...|-.| +-.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 46788888888887643 22222233456778999999998876654 7898888655 4467899999988888
Q ss_pred HHHhcCCCccHHHH
Q 027412 87 KMLEKGPKANVVTY 100 (223)
Q Consensus 87 ~~~~~~~~~~~~~~ 100 (223)
++...|. |....|
T Consensus 93 ~la~sg~-p~~q~F 105 (115)
T 2uwj_G 93 GLGGSSD-PALADF 105 (115)
T ss_dssp HHHTCSS-HHHHHH
T ss_pred HHHhCCC-HHHHHH
Confidence 8877653 344444
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.18 E-value=6.7 Score=22.81 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 027412 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86 (223)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (223)
..++|..+-+.+...+. ...+-..=+..+.+.|++++|..+.+... .||...|-.| +-.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 46788888888887643 22222233456778999999999887765 7899888655 4457888888888887
Q ss_pred HHHhcCCCccHHHH
Q 027412 87 KMLEKGPKANVVTY 100 (223)
Q Consensus 87 ~~~~~~~~~~~~~~ 100 (223)
++...|. |....|
T Consensus 94 ~la~sg~-p~~q~F 106 (116)
T 2p58_C 94 RLARSQD-PRIQTF 106 (116)
T ss_dssp HHTTCCC-HHHHHH
T ss_pred HHHhCCC-HHHHHH
Confidence 8877653 344444
No 276
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=78.70 E-value=9.4 Score=23.67 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=31.2
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 027412 18 LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (223)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (223)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 44455555442 233444444455556666666666655555555554445555555554
No 277
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=78.58 E-value=10 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.431 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 027412 66 TILIDAFCKEGRMDDATMMFSKM 88 (223)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~ 88 (223)
..++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34555555555555555555555
No 278
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=78.26 E-value=13 Score=25.00 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=9.0
Q ss_pred HHHhcCchhHHHHHHHHHH
Q 027412 36 GYCSLNRLDEAVQLFEKLT 54 (223)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~ 54 (223)
.|.+.|.+++|.+++++..
T Consensus 123 VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHS
T ss_pred HHHHhcchHHHHHHHHHHh
Confidence 3444444444444444443
No 279
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=77.84 E-value=9.6 Score=23.31 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=31.1
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 18 LTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+.+.|-.
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44455555543 233444444444 5566666776666665555555544455555555443
No 280
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=77.01 E-value=11 Score=23.55 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=37.1
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 027412 17 QLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (223)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (223)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-..
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345566665543 234445555555 56677777777777666666666555666666666543
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.50 E-value=25 Score=27.34 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-Ccc---HHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KAN---VVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
...+|.+++.|...+.++.|..+..+..-... .++ ...+-.+.+.+.-.++|.+|.+.+..+.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46789999999999999999999998742110 111 112233567788889999999999988765
No 282
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.47 E-value=24 Score=26.70 Aligned_cols=152 Identities=9% Similarity=0.052 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCc---cHHHHHHHHHHHHhhCChhHHHHHHHHHHH----CCCCCC--
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEK--GPKA---NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----NNISPN-- 131 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-- 131 (223)
.....|...+...|++.+|..++..+... +... -...+...++.|...+++..|..++.++.. ...+|+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34567888999999999999999988643 2211 135677788999999999999999998752 221222
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHH----HHHHHHHHhcCCcchHHHHHHHHHHCCCCCchhhHH
Q 027412 132 IVSYSILIDGLCKRGLMEEALYAFHCALDN-HLLPDVVTY----AILIRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLS 206 (223)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 206 (223)
...+...+..+...+++.+|.+.|.++.+. ....+...+ ..++.+..-.+....-..++.........++...+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~ 297 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHH
Confidence 235677778888899999998888877642 111122222 222222222232233333333333322235566677
Q ss_pred HHhhhHhh
Q 027412 207 TLADYNLQ 214 (223)
Q Consensus 207 ~l~~~~~~ 214 (223)
.++.+|..
T Consensus 298 ~L~k~f~~ 305 (445)
T 4b4t_P 298 SLVKLFTT 305 (445)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777643
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=75.09 E-value=11 Score=22.82 Aligned_cols=23 Identities=13% Similarity=0.431 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 027412 66 TILIDAFCKEGRMDDATMMFSKM 88 (223)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~ 88 (223)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555555566666666666655
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.40 E-value=39 Score=28.59 Aligned_cols=106 Identities=9% Similarity=0.010 Sum_probs=59.6
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------------
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLL------------------ 164 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 164 (223)
++..+...+.++-+.++... ++.++..-..++.+|...|++++|...|+++-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 44455555555544332221 233333334455666666666666666654421 110
Q ss_pred -----CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc-h----hhHHHHhhhHhhc
Q 027412 165 -----PDVVTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD-G----LLLSTLADYNLQS 215 (223)
Q Consensus 165 -----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~ 215 (223)
....-|..++..+-+.+-++.+.++.+..++. ..++ . ..+..++++.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~-~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccCCccchHHHHHHHHHHHhhC
Confidence 11235678888889999999999988888875 2222 2 2555666665543
No 285
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=74.15 E-value=14 Score=23.49 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=26.0
Q ss_pred CchhHHHHHHHHHHhCCCCC--cHHHHHHHHH-H-----HHhcCChhHHHHHHHHHHh
Q 027412 41 NRLDEAVQLFEKLTCVQLKP--NSITFTILID-A-----FCKEGRMDDATMMFSKMLE 90 (223)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 90 (223)
|++-+|.++++........+ ....|..||+ + ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665443333 3344555555 2 1234566666666555543
No 286
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=74.14 E-value=9.4 Score=24.28 Aligned_cols=43 Identities=7% Similarity=0.023 Sum_probs=18.1
Q ss_pred HHHHHhcCchhHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcC
Q 027412 34 ICGYCSLNRLDEAVQLFEKLTCV--QLKPNSITFTILIDAFCKEG 76 (223)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 76 (223)
+..+...+..-.|.++++.+.+. ++..+..|...-+..+.+.|
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33344444444455555554443 33333333333334444444
No 287
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.87 E-value=22 Score=25.50 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHhcCchhHHHHHHHH
Q 027412 8 LDAALKLFGQLTDRGLEP-DIITYNTIICGYCSLNRLDEAVQLFEK 52 (223)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 52 (223)
+++.+.-++.-++.|--- -...|.++..-|.+.+++++|++++..
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444444454444444111 134556666666666777776666543
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=73.79 E-value=9.1 Score=25.88 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHH
Q 027412 43 LDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98 (223)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (223)
.+....+|..|...++-. -...|......+...|++.+|..+|+.-++.+-.|-..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 357888999998887543 45677888888999999999999999999988777543
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.16 E-value=42 Score=28.40 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 027412 132 IVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDV----VTYAILIRGYCKAG 181 (223)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 181 (223)
..-|..++..+-+.+.++.+.++-+.+++.--..|. ..|..+.++.+..|
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 347888899999999999999988888764222232 35666776666544
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=72.69 E-value=20 Score=24.48 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=53.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc--CCCc----cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 027412 67 ILIDAFCKEGRMDDATMMFSKMLEK--GPKA----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILID 140 (223)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 140 (223)
--++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3567777788899998888876543 1211 111222233333333334444455555532 445566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 027412 141 GLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~ 160 (223)
.+.+.|+-++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 88888888888888876653
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.35 E-value=15 Score=23.08 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChh
Q 027412 59 KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIV 133 (223)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 133 (223)
..|+.-...-+...-. .+++..+|..|...++.. -...|......+...|++++|..+|+..++.+-.|-..
T Consensus 65 knD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp TTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4465544433333222 344888999998876542 45678888888999999999999999999887666543
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.72 E-value=33 Score=26.65 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 027412 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNS---ITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (223)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (223)
...++.+++.|...+.+++|..+..+..-... .++. .-+..++..+.-.+++.+|.+.+....+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 56789999999999999999999998842110 1121 12234567777889999999999998876443
No 293
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=70.15 E-value=17 Score=22.67 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=25.2
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 027412 19 TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (223)
Q Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (223)
.+.|.+++. --..++..+...+..-.|.++++.+.+.++..+..|..--+..+...|-
T Consensus 19 ~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 19 KKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344444332 2233334444444455555555555544444444444334444444443
No 294
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=69.87 E-value=17 Score=23.01 Aligned_cols=59 Identities=10% Similarity=-0.020 Sum_probs=30.3
Q ss_pred HCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcc
Q 027412 125 ENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDN--HLLPDVVTYAILIRGYCKAGRPT 184 (223)
Q Consensus 125 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 184 (223)
+.|++++. .-..++..+...+..-.|.++++.+.+. ++..+..|..--+..+...|-..
T Consensus 26 ~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 26 QGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44555433 3344445555555555666666666554 44445555444455555555443
No 295
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=69.76 E-value=28 Score=24.98 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=91.4
Q ss_pred ccccCHHHHHHHHHHHhhC----C-CCcCHHHHHHHHHHHHhcCchhHHHHH----HHHHHhCCCCCcHHHHHHHHHHHH
Q 027412 3 IKECHLDAALKLFGQLTDR----G-LEPDIITYNTIICGYCSLNRLDEAVQL----FEKLTCVQLKPNSITFTILIDAFC 73 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~ 73 (223)
+..|++=+|.+.++.+..+ + ..--......-...+.+.|+...|.++ ++-..+.+.+++......++..+.
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3567888888877765433 1 111122333444566778887776665 455556678888888888888876
Q ss_pred hcCChh-HHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhhCChhHHHHHHH----------------HHHHC--CC
Q 027412 74 KEGRMD-DATMMFSKML----EKG--PKANVVTYSCLIDGYFKSQNMKSAFDVYE----------------EMCEN--NI 128 (223)
Q Consensus 74 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------~~~~~--~~ 128 (223)
....-+ .-.+++++++ +.| ..-++.....+...|.+.+++.+|...|- ..... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533211 1233444333 222 22367788889999999999988887552 11121 32
Q ss_pred CCChhHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 129 SPNIVSY-SILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 129 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
+-....| .-.+--|.-.++...|..+++...
T Consensus 184 ~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2122222 122334556788888888887654
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=69.17 E-value=18 Score=22.68 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL--MEEALYAFHCALDNHLLPDVVTYA 171 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 171 (223)
....++.-|...|+.++|...++++..-. .....+...+..++-+.++ .+.+..++..+...++-+......
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~ 84 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 84 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 45668889999999999999999985211 1112233444444444333 456778888888777654444333
No 297
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=68.65 E-value=17 Score=22.01 Aligned_cols=44 Identities=9% Similarity=-0.148 Sum_probs=20.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 139 IDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
+..+...+..-.|.++++.+.+.++..+..|..-.+..+...|-
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33333344444555555555544444444444444444444443
No 298
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=67.46 E-value=16 Score=22.50 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=19.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 027412 138 LIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAG 181 (223)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 181 (223)
++..+...+..-.|.++++.+.+.++..+..|..--+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33333333344445555555544444444444444444444444
No 299
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.37 E-value=11 Score=25.86 Aligned_cols=24 Identities=8% Similarity=0.129 Sum_probs=12.8
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCc
Q 027412 178 CKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 178 ~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
+..+.......+++.+.+.|..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHccccchHHHHHHHHHHcCCCCC
Confidence 344554455556666666655444
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=67.34 E-value=11 Score=26.30 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=6.7
Q ss_pred HhcCCHHHHHHHHHH
Q 027412 143 CKRGLMEEALYAFHC 157 (223)
Q Consensus 143 ~~~~~~~~a~~~~~~ 157 (223)
+..|+.+-+..+++.
T Consensus 169 ~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 169 IKNGHVDMMILLLDY 183 (285)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHc
Confidence 344554444444433
No 301
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=66.33 E-value=17 Score=22.00 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=27.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
.++..+...+..-.|.++++.+.+.++..+..|....+..+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 44445555555666777777776665555555555555666655543
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=66.11 E-value=29 Score=23.71 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhC--CCCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 31 NTIICGYCSLNRLDEAVQLFEKLTCV--QLKP----NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
---++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 34578899999999999999987542 1221 111222233333333333444455555533 33566667778
Q ss_pred HHHHhhCChhHHHHHHHHHHH
Q 027412 105 DGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~ 125 (223)
..+.+.|+.++|.++|-+...
T Consensus 99 ~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHH
Confidence 888999999999999987764
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=65.94 E-value=28 Score=23.56 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCh
Q 027412 79 DDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 132 (223)
+.+..+|..|...++.. -...|......+...|++++|..+|+..++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 57778999998876543 4567888889999999999999999999988766643
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.81 E-value=23 Score=22.61 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChh
Q 027412 59 KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIV 133 (223)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 133 (223)
..|+......+..--.. +.+..+|..|...++.. -...|......+-..|++.+|..+|+..++.+-.|-..
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 44555444444322222 34677888888776542 45677778888888999999999999998887677544
No 305
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.40 E-value=22 Score=23.60 Aligned_cols=181 Identities=10% Similarity=0.019 Sum_probs=77.0
Q ss_pred ccccCHHHHHHHHHHHhhCCCCcCHH--HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCC
Q 027412 3 IKECHLDAALKLFGQLTDRGLEPDII--TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS---ITFTILIDAFCKEGR 77 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 77 (223)
++.|+.+....+++.+.+.+..++.. .-.+.+...+..|+.+-+.. +.+.|..++. .-. ..+...+..|+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~-t~l~~A~~~~~ 91 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL----LVTAGASPMALDRHGQ-TAAHLACEHRS 91 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSC-CHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHH----HHHcCCCccccCCCCC-CHHHHHHHcCC
Confidence 35677777777777655554333311 11123344455666554433 3334433321 111 23334445677
Q ss_pred hhHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChh---HHHHHHHHHHhcCCHHHH
Q 027412 78 MDDATMMFSKMLEKGPKA---NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIV---SYSILIDGLCKRGLMEEA 151 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 151 (223)
.+-+..+++.....+..+ +....+ .+...+..|+.+-+. .+.+.|..++.. .-...+...+..|+.+-+
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQ----LLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHH----HHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Confidence 665555554432111111 111222 223334556654443 334444333221 112233444566776655
Q ss_pred HHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCc
Q 027412 152 LYAFHCALDNHLLPDVVT--YAILIRGYCKAGRPTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 201 (223)
..++ +.|..++... -.+.+...+..|+.+ +++.+.+.|..|+
T Consensus 167 ~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 167 QLLL----QHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHH----HTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 5444 3343332110 011223334556544 4444555665554
No 306
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.47 E-value=53 Score=26.22 Aligned_cols=176 Identities=8% Similarity=-0.043 Sum_probs=91.6
Q ss_pred cCHHHHHHHHHHHhhCCCCcCHHHHH----HHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 027412 6 CHLDAALKLFGQLTDRGLEPDIITYN----TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (223)
.+.+.|...+....+.. ..+..... .++......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 35677777777765432 22322222 22222333342445555665544332 2333333344445567888888
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC------------CCCC-------C---hh-----H
Q 027412 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN------------NISP-------N---IV-----S 134 (223)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-------~---~~-----~ 134 (223)
...|+.|...... .....--+.+++...|+.++|..+|+.+... |.++ + .. .
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccCh
Confidence 8888877543221 2333334566777788888888888776432 2111 0 00 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 027412 135 YSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQ 188 (223)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 188 (223)
-...+..+...|....|...+..+.+. . +......+.......|.++.++.
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHH
Confidence 112344566778888887777776653 2 22333344444445555554443
No 307
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=64.47 E-value=16 Score=22.48 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 027412 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (223)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (223)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445555555556667777777777666556666555556666665543
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.33 E-value=21 Score=21.62 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL--MEEALYAFHCALDNHLLPDVVT 169 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 169 (223)
....++.-|...|+.++|...++++..-. .....+...+..++-+.++ .+.+..++..+...++-+....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 34668888999999999999999985211 1112233444444444432 4567888888887776444333
No 309
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=62.10 E-value=8.4 Score=19.78 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 027412 79 DDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (223)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (223)
++|+..|.+|++..-.++..+|.-.++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 44555555555443333445555555444
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=61.31 E-value=20 Score=20.40 Aligned_cols=65 Identities=23% Similarity=0.158 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 027412 13 KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (223)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (223)
.+++.+.+.|+- +......+-. .......++|.+++..+...|. .+|..++.++...|+...|.-
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHHH
Confidence 366777777754 4433333322 1012468889999998887653 467778888877677665543
No 311
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=60.51 E-value=27 Score=21.58 Aligned_cols=57 Identities=7% Similarity=0.015 Sum_probs=27.9
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC
Q 027412 53 LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (223)
+.+.|..++..= ..++..+...+ .-.|.++++.+.+.++..+..|..--+..+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 444555544432 22334444444 5566666666666655545444333444444444
No 312
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.28 E-value=31 Score=22.20 Aligned_cols=170 Identities=10% Similarity=0.001 Sum_probs=104.9
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
++...-...+..+...+..+....+.+.+ . .++..+-...+.++...++.+. ...+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 56677777777777777654444444433 2 4466666667777777776544 444444443 24666666677
Q ss_pred HHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 027412 105 DGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPT 184 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 184 (223)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.++. .+...+..+... ++...-...+.++...|. .
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-h
Confidence 7777777754 4444444443 45777777788888888764 344555555543 577777778888888876 4
Q ss_pred hHHHHHHHHHHCCCCCchhhHHHHhhhHhh
Q 027412 185 EAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 214 (223)
Q Consensus 185 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 214 (223)
++...+..+.+ .++...-...+.++.+
T Consensus 169 ~~~~~L~~~l~---d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 169 RVRAAMEKLAE---TGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHH---HCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 56667777765 3455544444444433
No 313
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=59.94 E-value=61 Score=25.56 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEA 151 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 151 (223)
+.+.....+.+++.+-+--+..-..-++..|.+.|-.+.|.++++.+-..-+ -+...+ ..+..|.+.|+++.+
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHHHHHcCChhhc
Confidence 3444555566665554433445556667777777777777777776655422 223333 455566666666654
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=59.37 E-value=56 Score=24.79 Aligned_cols=28 Identities=14% Similarity=-0.068 Sum_probs=16.8
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLT 54 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (223)
.+......++.. ..|+..++..+++.+.
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMA 219 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 455555555554 3567777776666654
No 315
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.79 E-value=20 Score=19.40 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=29.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHCCCCCchhhHHHHhhhHhhcC
Q 027412 158 ALDNHLLPDVVTYAILIRGYCKAG-RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 216 (223)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 216 (223)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334455444332 23344444433 45556666666665554455555555555554443
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=58.76 E-value=30 Score=21.53 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=17.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCchhhHHHHhhhHh
Q 027412 174 IRGYCKAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 213 (223)
Q Consensus 174 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 213 (223)
+..+...+.+-.|.++++.+.+.+...+..|....++.+.
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 72 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLE 72 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 3333333444445555555544433334444443333333
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=57.72 E-value=41 Score=22.70 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHhcCCCccHH-------HHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 78 MDDATMMFSKMLEKGPKANVV-------TYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
.+.|+.+|+.+.+...-++.. .--..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 355666666665543221111 1112344566777777777777766553
No 318
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=57.66 E-value=44 Score=25.50 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChh--------HH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIV--------SY-SILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
..+.+.+.|.+.++...+..+++.+...+..|+.. +| .-+...+...+++.+|.+.+..+.+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45778899999999999999999888765522222 22 3445666677888888777666554
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=57.39 E-value=30 Score=21.05 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 147 LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
..-.|.++++.+.+.++..+..|..--+..+...|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 334455555555444444444444444444444443
No 320
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=57.33 E-value=34 Score=21.76 Aligned_cols=52 Identities=6% Similarity=0.119 Sum_probs=33.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCc--cHHHHHHHHH-H-----HHhhCChhHHHHHHHHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKGPKA--NVVTYSCLID-G-----YFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 125 (223)
+.|++-+|-++++..-.....+ ....|..||. + ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4477777777777777665554 4556666666 2 2346777777777776654
No 321
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=57.29 E-value=32 Score=21.40 Aligned_cols=36 Identities=14% Similarity=-0.010 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 147 LMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
..-.|.++++.+.+.++..+..|..--+..+...|-
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 344455555555554444444444444444444443
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=56.57 E-value=32 Score=21.20 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=30.7
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCC
Q 027412 53 LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (223)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (223)
+.+.|..++..=. .++..+...+..-.|.++++.+.+.++..+..|..--+..+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4445555444322 3444444455556677777777666555455444444445544443
No 323
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=56.02 E-value=39 Score=22.02 Aligned_cols=158 Identities=14% Similarity=0.147 Sum_probs=91.4
Q ss_pred HHHHHHH-HHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--c----------
Q 027412 29 TYNTIIC-GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--A---------- 95 (223)
Q Consensus 29 ~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~---------- 95 (223)
-|..|+. .+.-.|.+.+++-++...- ..+..-|.. -+|-+.+++..|...++.+....+. |
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 4444443 3445788888877765431 223333433 4777889999999999999854332 1
Q ss_pred -----cHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC--------------CCCChhHHHHHHHHHHhcC----CHHHHH
Q 027412 96 -----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN--------------ISPNIVSYSILIDGLCKRG----LMEEAL 152 (223)
Q Consensus 96 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~----~~~~a~ 152 (223)
....++.+...+...|+.++|+..+..--... ++.....-+.++. .+.| .+....
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~--~~~~i~~~y~~d~~ 185 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQT--GRRGIEEEYVSDSI 185 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-------------CHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhh--hhccchhhhhhhHH
Confidence 13457888899999999999999886543321 1111110011110 0000 011111
Q ss_pred --------HHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCcchHHHHHHHHHHC
Q 027412 153 --------YAFHCALDNHLLPDVVTY--AILIRGYCKAGRPTEAMQLYDSMLRN 196 (223)
Q Consensus 153 --------~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 196 (223)
...++.. +..|...+| ......+...|..++...+|..+++.
T Consensus 186 ~lHe~~s~~~ikkY~--n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 186 EFHESLSPSLVKKYM--EHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp HHHHHCCHHHHHHHH--TSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHH--HhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 1222222 233676665 45566788999999999999988874
No 324
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=55.89 E-value=69 Score=24.78 Aligned_cols=74 Identities=15% Similarity=0.024 Sum_probs=49.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLC 143 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (223)
|++...-...++.|...|.+.....|. +...||.|...+...|+.-.|.-.|-+..... .|-..+..++...+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Confidence 444444456678899999988888776 77888888888887777766666655554432 444555555555444
No 325
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.38 E-value=59 Score=23.87 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 027412 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL--MEEALYAFHCALDNHLLPDVVTYAILIRGY 177 (223)
Q Consensus 100 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (223)
...++.-|...++.++|.+.++++..-. .....+...+..++-+.++ .+...+++..+...++-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4567777778888888888887775321 1122334444444444333 345777777777777654444444444444
Q ss_pred HhcC----CcchHHHHHHHHH
Q 027412 178 CKAG----RPTEAMQLYDSML 194 (223)
Q Consensus 178 ~~~g----~~~~a~~~~~~~~ 194 (223)
.... +...|..++.++.
T Consensus 299 ~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 299 NEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHH
Confidence 3332 2345555555444
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=54.83 E-value=44 Score=22.19 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHhcCCCccHH----HHHHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 78 MDDATMMFSKMLEKGPKANVV----TYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
.+.|+.+|+.+.+....+... .--..+..|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 345666666554432211111 112234567777777777777777544
No 327
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=53.53 E-value=56 Score=25.75 Aligned_cols=88 Identities=5% Similarity=-0.106 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHh--cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 28 ITYNTIICGYCS--LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 28 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
..|..-+..+.. ..+........+.+..+-+--+..-..-++..|.+.|-.+.|.++++.+-.+-.. +...+ .-+.
T Consensus 480 sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~ 557 (570)
T 3f3f_C 480 ELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIA 557 (570)
T ss_dssp TTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------
T ss_pred cchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHH
Confidence 456666665554 3455566677777765543345666777899999999999999999988776554 45555 5667
Q ss_pred HHHhhCChhHHH
Q 027412 106 GYFKSQNMKSAF 117 (223)
Q Consensus 106 ~~~~~~~~~~a~ 117 (223)
.|.+.|+++.+.
T Consensus 558 ~f~rA~~~~~Vk 569 (570)
T 3f3f_C 558 NFSRAGKYELVK 569 (570)
T ss_dssp ------------
T ss_pred HHHHcCChhhcc
Confidence 788888887653
No 328
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.32 E-value=89 Score=24.98 Aligned_cols=116 Identities=8% Similarity=-0.063 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHHhcCCCccHHH----HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 027412 76 GRMDDATMMFSKMLEKGPKANVVT----YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEA 151 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 151 (223)
.+.+.|...+....+...- +... +..+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 3678888888777654322 2222 222333333444355666666665543 34444455555666678999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 027412 152 LYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSMLR 195 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 195 (223)
...|..|..... ......-.+..++...|+.++|..+|..+.+
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999998866432 2344456677888899999999999999875
No 329
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.20 E-value=27 Score=22.37 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=26.8
Q ss_pred HHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHCCCCCch
Q 027412 141 GLCKRGLMEEALYAFHCA-LDNHLLPDVVTYAILIRGYCKAGR-PTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~ 202 (223)
..+..|+.+-+..+++.- ..... .+..-.+.+..+ +..++ ...-.++.+.+.+.|..|+.
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A-~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEA-VGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTC-CCTTSCCHHHHH-HHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCC-CCCCCCCHHHHH-HHhccchhhHHHHHHHHHHCCCCCCc
Confidence 344566766655555443 11111 122222223323 33343 33335566666777766653
No 330
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.93 E-value=63 Score=23.12 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHH
Q 027412 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGL--MEEALYAFHCALDNHLLPDVVT 169 (223)
Q Consensus 101 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 169 (223)
..++.-|...|+.++|.+.++++..-.. ....+...+..+.-+.++ .+.+.+++..+.+.++-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4466667777777777777777642110 112233333333333322 3455666666665555443333
No 331
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=51.43 E-value=46 Score=25.41 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcc--------HHHHH-HHHHHHHhhCChhHHHHHHHHHHHC
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--------VVTYS-CLIDGYFKSQNMKSAFDVYEEMCEN 126 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 126 (223)
..+.+...|.+.++...+..+++.+...+.-|+ ..+|. .+.+.+...+++.+|.+.+..+.+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 457888999999999999999999887755222 23333 3567778889999999888877654
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=51.23 E-value=51 Score=21.90 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCC-----hhHHHHHHHHHHHCCCCC
Q 027412 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN-----MKSAFDVYEEMCENNISP 130 (223)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 130 (223)
.+.+.|+-.+-+|++.| .|....=..++.+.-.-|. ...|...++.....|.|.
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 45566666666666665 4433333333333333332 123444445555555433
No 333
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=51.08 E-value=84 Score=24.32 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=49.9
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGY 177 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (223)
|.........++.|..+|.++.... |.+...||.|.-.....|+.-.|.-.|-+...... |-..+...+...+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~-Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCC-CChhHHHHHHHHH
Confidence 3444445566789999999998874 77788999999888888887777766666554322 4444444444443
No 334
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.45 E-value=49 Score=21.46 Aligned_cols=140 Identities=10% Similarity=-0.057 Sum_probs=84.9
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
++...-...+.++...++.+. ...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++...-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHH
Confidence 466666677777777776443 344444432 457777777778888888754 4444444443 34556666667
Q ss_pred HHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 027412 105 DGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA 180 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
.++...++.+ +...+..+.. .++..+-...+.++.+.+. ..+...+..+.+. ++...-...+.++...
T Consensus 134 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 134 FALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 7777777654 4555555554 4577777888888888877 4556666666553 4555544444444443
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=49.64 E-value=39 Score=24.46 Aligned_cols=64 Identities=5% Similarity=0.041 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHCCCC
Q 027412 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ--NMKSAFDVYEEMCENNIS 129 (223)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 129 (223)
....++.-|...|+.++|.+.++++...... ...+.. .+......+ .-+.+..++..+.+.++-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~-~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRH-GVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHH-HHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 3567888888999999999998887432111 112222 222222222 234556667777666543
No 336
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=49.47 E-value=49 Score=21.22 Aligned_cols=92 Identities=10% Similarity=0.120 Sum_probs=44.2
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHH---HHHHHHHHHHh-hCC
Q 027412 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV---TYSCLIDGYFK-SQN 112 (223)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~~~ 112 (223)
.++.|+.+....++..-.. ..+...-.+.+...+..|+.+.-.++.+.+++.|..++.. -++.|..++.. ..+
T Consensus 13 Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Confidence 3456777766555543210 1110111234455556666665566677777766555432 22223222222 223
Q ss_pred hhHHHHHHHHHHHCCCCCC
Q 027412 113 MKSAFDVYEEMCENNISPN 131 (223)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~ 131 (223)
.....++.+.+.+.|..++
T Consensus 90 ~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHHHHHHHCCCCCC
Confidence 3344566666677665544
No 337
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=49.37 E-value=72 Score=23.08 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCC
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR--MDDATMMFSKMLEKGPK 94 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 94 (223)
....++.-|...|+.++|...++++..... .......++......++ .+.+..++..+.+.+.-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 356788899999999999998888752111 11122222232222222 34555666666655543
No 338
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=48.59 E-value=91 Score=24.01 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=80.5
Q ss_pred CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHH
Q 027412 41 NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120 (223)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 120 (223)
.+.+-|.++..+ .|++--...|..-.+.+...|++++|.++--..-+ |.-.+..|.+.+-.+=...|+..-.+.+|
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 455555555433 33333344465566677778888888777655433 23336666665555555566777777778
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 121 EEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
..+.+.| ..+..---.+++.-...|+.+-..+++.+ .....+...=. ++ +..+..-|..+|.+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGD-LV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHH-HH----HHHCSHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHh-hh----hhcCHHHHHHHHHHc
Confidence 7777776 55655555566666677777777766643 33334433222 11 333455555555544
No 339
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=47.85 E-value=37 Score=19.28 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=16.0
Q ss_pred cCChhHHHHHHHHHHhcCCCccHHHHHHHHH
Q 027412 75 EGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (223)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (223)
.|++-+|-++++..-...+.|....|..++.
T Consensus 14 ~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq 44 (94)
T 2cwy_A 14 AGRYYEVHEVLEPYWLKATGEERRLLQGVIL 44 (94)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 3666666666665555443333444444444
No 340
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=47.12 E-value=83 Score=23.14 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=26.5
Q ss_pred cccccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCc--hhHHHHHHHHHHhCCC
Q 027412 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--LDEAVQLFEKLTCVQL 58 (223)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 58 (223)
|...|++++|...++++.... .........++......++ .+.+..++..+...++
T Consensus 22 Y~~~~D~~Ea~~~l~eL~~p~-~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 22 YLNSGNANEAVNGVREMRAPK-HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHCCHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHhCCCHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 445677777777777765310 0012223333333333222 2345555566655543
No 341
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.03 E-value=51 Score=20.73 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 130 (223)
..+.+..+++.+.+.|.--|...-..++....+.| .....+-.++...|+..
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 44556667777777776645444455555555433 23445666667777543
No 342
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.47 E-value=78 Score=22.64 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHHCCCCCch
Q 027412 135 YSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR--PTEAMQLYDSMLRNGIMPDG 202 (223)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~ 202 (223)
...++.-|...|+.++|.+.++++....+ ....+...+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 46788889999999999999998853211 112233344444443322 34566777777766554443
No 343
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=46.09 E-value=82 Score=22.78 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=46.5
Q ss_pred ccccCHHHHHHHHHHHhhC------CCCcCHHHHHHHHHHHHh------------c---CchhHHHHHHHHHHhCCCCCc
Q 027412 3 IKECHLDAALKLFGQLTDR------GLEPDIITYNTIICGYCS------------L---NRLDEAVQLFEKLTCVQLKPN 61 (223)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~------------~---~~~~~a~~~~~~~~~~~~~~~ 61 (223)
...|++++|+..|+.+... +-+-+......++..|.. . .+..+..++-.-+......|.
T Consensus 125 ~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~LQp~ 204 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLSPI 204 (325)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSCCCHH
T ss_pred HhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhccCCCcHH
Confidence 4678999999999887653 111112223333333221 0 122333333333333333432
Q ss_pred H--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 027412 62 S--ITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (223)
Q Consensus 62 ~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (223)
. -+...-|....+.+++..|..+-+++++.++.
T Consensus 205 H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 205 HRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2 23444555556667777777776776666543
No 344
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=45.67 E-value=24 Score=21.23 Aligned_cols=47 Identities=6% Similarity=-0.054 Sum_probs=22.6
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 027412 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 103 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
.|...+..++.+-|.++++-..+.| +...|.+.+-.|...=++|-++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 3444444555555555555555443 3444444444444444444443
No 345
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.90 E-value=52 Score=19.64 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=10.1
Q ss_pred HHHhhCChhHHHHHHHHHHH
Q 027412 106 GYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~ 125 (223)
.+...++++.|..+...+..
T Consensus 70 ~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 70 QELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33445555555555554443
No 346
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.80 E-value=69 Score=21.02 Aligned_cols=154 Identities=6% Similarity=-0.055 Sum_probs=72.1
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccH---HHHHHHHHHHH
Q 027412 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSI--TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV---VTYSCLIDGYF 108 (223)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 108 (223)
+...+..|+.+.+..+++.+.+.+..++.. .-...+...+..|+.+-+. .+.+.|..++. .-.+ .+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t-~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQT-AAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCC-HHHHHH
Confidence 344566788888888887666555433321 0112334445667765443 34444444332 1222 334445
Q ss_pred hhCChhHHHHHHHHHHHCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 027412 109 KSQNMKSAFDVYEEMCENNISP---NIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVV---TYAILIRGYCKAGR 182 (223)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 182 (223)
..|+.+-+..+++.....++.+ +..-.+. +...+..|+.+-+..+++ .|..++.. .-...+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLLLE----RGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHHHH----cCCCcccccccCCCcHHHHHHHcCC
Confidence 6677766665555433111111 1112222 333445667665555443 44333211 11123334455666
Q ss_pred cchHHHHHHHHHHCCCCCc
Q 027412 183 PTEAMQLYDSMLRNGIMPD 201 (223)
Q Consensus 183 ~~~a~~~~~~~~~~~~~p~ 201 (223)
.+ +++.+.+.|..++
T Consensus 163 ~~----~v~~Ll~~g~~~~ 177 (241)
T 1k1a_A 163 LS----MVQLLLQHGANVN 177 (241)
T ss_dssp HH----HHHHHHHTTCCTT
T ss_pred HH----HHHHHHHcCCCCC
Confidence 54 3444455565554
No 347
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.23 E-value=60 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=11.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCC
Q 027412 72 FCKEGRMDDATMMFSKMLEKGP 93 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~ 93 (223)
.++.|+.+....+++.+.+.+.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCC
Confidence 3345555555555554444443
No 348
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=40.58 E-value=38 Score=17.31 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHHH
Q 027412 146 GLMEEALYAFHCAL 159 (223)
Q Consensus 146 ~~~~~a~~~~~~~~ 159 (223)
|+.+.|+..+-.|.
T Consensus 37 gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 37 GNKDAAINSLLQMG 50 (59)
T ss_dssp TCHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHcCc
Confidence 44444444444443
No 349
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=40.35 E-value=70 Score=20.36 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHH
Q 027412 31 NTIICGYCSLNRLDEAVQLFEKLT 54 (223)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~ 54 (223)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555543
No 350
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=40.23 E-value=44 Score=19.99 Aligned_cols=50 Identities=4% Similarity=0.216 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH---hcCCcchHHHHHHHHHHCCCC
Q 027412 147 LMEEALYAFHCALDNHLL-PDVVTYAILIRGYC---KAGRPTEAMQLYDSMLRNGIM 199 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~ 199 (223)
.+++|.+.+..|++.-+. -.+..||..+..+. ..++. ..+|..+++.++.
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 567777777776643221 25667777776654 22333 3445556655443
No 351
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=40.18 E-value=57 Score=19.28 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHH-CCCCCChhHHHHHHHHHHhcCCHHHH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-NNISPNIVSYSILIDGLCKRGLMEEA 151 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 151 (223)
.+.+|+.-+++.... .++......++..+-.. ++.++++.+...+ .|+ .+.++...+....+.|-.+..
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~ 72 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED 72 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH
Confidence 455666666666443 23444444555444332 4445555544442 343 344555555555555544333
No 352
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=40.16 E-value=83 Score=21.14 Aligned_cols=103 Identities=8% Similarity=0.039 Sum_probs=54.5
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCccH
Q 027412 19 TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG-RMDDATMMFSKMLEKGPKANV 97 (223)
Q Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 97 (223)
+..|...+...+..+........-...|+. ++......... |-.-+.+.| ..+.+..+++.+.+.|.--|.
T Consensus 40 L~kg~el~~e~~~~i~~~~~~~~a~~~Al~----~Ls~r~~S~~E----L~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~ 111 (221)
T 3d5l_A 40 LMKGTELDEKQIAAIATADQQAKAYSRMLD----YLSYQMRTESD----IVKKLKEIDTPEEFVEPILKKLRGQQLIDDH 111 (221)
T ss_dssp CCTTCEECHHHHHHHHHHHHHHHHHHHHHH----HHTTSCCCHHH----HHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH
T ss_pred CcCCCCCCHHHHHHHHHhHHHHHHHHHHHH----HhccccccHHH----HHHHHHhcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 445666677777766654333222333333 33222121222 223333344 455667788888888877555
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC
Q 027412 98 VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (223)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 130 (223)
..-...+....+.+.+ ....+-.++...|+++
T Consensus 112 rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 112 AYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 5555556655553332 3555667777888654
No 353
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.78 E-value=1.1e+02 Score=22.23 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=16.0
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 027412 72 FCKEGRMDDATMMFSKMLEK 91 (223)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~ 91 (223)
+...|++++|+..|+.++..
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 35679999999999888653
No 354
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.63 E-value=17 Score=24.05 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=10.6
Q ss_pred HHHHHHhcCchhHHHHHHH
Q 027412 33 IICGYCSLNRLDEAVQLFE 51 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~ 51 (223)
.+...+..|+.+-+..+++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 4445566677665554444
No 355
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=38.48 E-value=50 Score=19.91 Aligned_cols=50 Identities=4% Similarity=0.036 Sum_probs=34.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHH
Q 027412 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (223)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 119 (223)
-.|...+..++.+-|+++++-....| +...|.+.+..|...=+++-++++
T Consensus 37 DAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 34555566777788888887777655 456677777777777777766554
No 356
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=37.88 E-value=1.8e+02 Score=24.50 Aligned_cols=49 Identities=10% Similarity=-0.022 Sum_probs=23.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 74 KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
+.|..++-..++++..... +..--..++.+++...+.+...++++....
T Consensus 738 ~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 3344444444444444321 222334455555555666555555555543
No 357
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=37.08 E-value=1e+02 Score=21.42 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-cCChhHHHHHHHHHHh
Q 027412 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK-EGRMDDATMMFSKMLE 90 (223)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 90 (223)
+....-.++...-+.++++++....+++.+.+...+..--|.|-.+|-+ .|....+.+++..+.+
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieq 95 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 95 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHH
Confidence 3445556667777888999999888888888777777766666555533 2444455566555443
No 358
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=36.24 E-value=86 Score=20.18 Aligned_cols=115 Identities=5% Similarity=-0.062 Sum_probs=59.8
Q ss_pred ChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 027412 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (223)
..+.+..+++.+.+.|.--|...-..++....+.|.+. ...+-.++...|++++ +....+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHH
Confidence 34566778888888887756555566666666655443 3566677778886443 33333322211122445666655
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHHH
Q 027412 157 CALDN-HLLPDVVTYAILIRGYCKAGR-PTEAMQLYDSML 194 (223)
Q Consensus 157 ~~~~~-~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 194 (223)
+-... ...++.....-++..+.+.|- ++.+..+++.+.
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 43321 111222334444555555554 334444444443
No 359
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=36.04 E-value=70 Score=21.43 Aligned_cols=55 Identities=7% Similarity=0.033 Sum_probs=27.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhh---CChhHHHHHHHHHHH
Q 027412 70 DAFCKEGRMDDATMMFSKMLEKGPKANV-------VTYSCLIDGYFKS---QNMKSAFDVYEEMCE 125 (223)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 125 (223)
...+..|+.+....+++.+...+..++. .-.+.|..+ +.. |+.+-+..+++.-..
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 3445566666666666655555443322 223333333 333 666666666655443
No 360
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=35.29 E-value=98 Score=20.55 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=8.6
Q ss_pred CchhHHHHHHHHHHhCCCC
Q 027412 41 NRLDEAVQLFEKLTCVQLK 59 (223)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~ 59 (223)
.+.+.|+-++-+|++.|-.
T Consensus 21 SDpDAAly~LaRMl~~GED 39 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGD 39 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 3444444444444444433
No 361
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=34.21 E-value=59 Score=17.74 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.2
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHH
Q 027412 101 SCLIDGYFKSQNMKSAFDVYEEMCE 125 (223)
Q Consensus 101 ~~l~~~~~~~~~~~~a~~~~~~~~~ 125 (223)
..+.+-|+..|+++.|..+|+....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4467778888888888888887664
No 362
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.91 E-value=85 Score=20.29 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 027412 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (223)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (223)
..++-++.+++...-+++++..+.+....|.- +..+|.--.+.+++
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I-~ld~ylK~vR~LaR 157 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRGTI-PLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 34455566665555566666666666665543 45555544444444
No 363
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=33.79 E-value=54 Score=17.17 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=9.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 027412 69 IDAFCKEGRMDDATMMFSKMLEKG 92 (223)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~ 92 (223)
+..+++..-.++++..+++..+.|
T Consensus 9 l~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 9 YNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333333444444444444443
No 364
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.38 E-value=60 Score=20.98 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 027412 130 PNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA 180 (223)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
|....++.++..++.-.-.+.++..+.++...|. .+..+|.--++.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3345668888888888888888888888887775 5777776666666653
No 365
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.34 E-value=1.1e+02 Score=20.38 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=27.0
Q ss_pred cCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCC-----hhHHHHHHHHHHHCCC
Q 027412 75 EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN-----MKSAFDVYEEMCENNI 128 (223)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 128 (223)
-.+.+.|+-.+-+|++.|-.|....=..++.+.-.-|. ...|...++.....|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 35666666666666666655444333333334333332 1234445555555553
No 366
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.98 E-value=1.1e+02 Score=20.39 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=38.6
Q ss_pred HHHHHHH---hcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHhcCC
Q 027412 32 TIICGYC---SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR-----MDDATMMFSKMLEKGP 93 (223)
Q Consensus 32 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 93 (223)
.+|+++. +-.+.+.|+-++-+|.+.| .|.-..-..++.+.-..|. ...|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3444444 4578999999999999988 7666666666666655554 2344445555555554
No 367
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=32.25 E-value=48 Score=16.90 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=10.9
Q ss_pred CCcchHHHHHHHHHHCC
Q 027412 181 GRPTEAMQLYDSMLRNG 197 (223)
Q Consensus 181 g~~~~a~~~~~~~~~~~ 197 (223)
-+++.|...|.++...|
T Consensus 34 Wd~~~A~~~F~~l~~~~ 50 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKG 50 (59)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 35667777777766554
No 368
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=32.23 E-value=87 Score=19.06 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=6.4
Q ss_pred HHhcCchhHHHHHH
Q 027412 37 YCSLNRLDEAVQLF 50 (223)
Q Consensus 37 ~~~~~~~~~a~~~~ 50 (223)
.++.|+.+.+..++
T Consensus 15 A~~~g~~~~v~~ll 28 (165)
T 3twr_A 15 AAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHTCHHHHHHHC
T ss_pred HHHhCCHHHHHHHH
Confidence 34445554444443
No 369
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=32.06 E-value=2.8e+02 Score=24.86 Aligned_cols=79 Identities=8% Similarity=0.003 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 027412 114 KSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGRPTEAMQLYDSM 193 (223)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 193 (223)
+...+.|.++.+---.-|.......+......+++..|++++.++.+.. |+...|..++..+...| |+....+.+++
T Consensus 1266 ~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINRM 1342 (1354)
T ss_dssp HHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHhh
Confidence 3444555555543111233333333344446788888888888887654 57778877777776665 45555555555
Q ss_pred HH
Q 027412 194 LR 195 (223)
Q Consensus 194 ~~ 195 (223)
.-
T Consensus 1343 ~~ 1344 (1354)
T 3lxu_X 1343 MI 1344 (1354)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 370
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=30.75 E-value=39 Score=21.27 Aligned_cols=49 Identities=4% Similarity=0.225 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH---hcCCcchHHHHHHHHHHCCC
Q 027412 147 LMEEALYAFHCALDNHLL-PDVVTYAILIRGYC---KAGRPTEAMQLYDSMLRNGI 198 (223)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~ 198 (223)
.+++|.+.+..|++.-+. -.+..||..+..+. ..++. ..+|..+++.++
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~l 125 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGI 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCc
Confidence 567777777777643211 14456777666654 33333 444555555544
No 371
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=30.13 E-value=1.5e+02 Score=21.29 Aligned_cols=112 Identities=8% Similarity=0.089 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhC---CCCcC---HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 9 DAALKLFGQLTDR---GLEPD---IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 9 ~~A~~~~~~~~~~---~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
+.|..+|..+... ...++ .......+..+.+..+ -++++.+.+.++.|...++.-++..+.+.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4566777776543 11222 2222223333333323 245666777888888888888888888887899999
Q ss_pred HHHHHHHhcCCCcc-HHHHH--HHHHHH----HhhCChhHHHHHHHHHH
Q 027412 83 MMFSKMLEKGPKAN-VVTYS--CLIDGY----FKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~--~l~~~~----~~~~~~~~a~~~~~~~~ 124 (223)
++++.+...|.... ...+. +++..+ ....++++...+++.+.
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Confidence 99999998875432 22222 222221 23467788887776543
No 372
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=29.95 E-value=80 Score=17.95 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHH
Q 027412 99 TYSCLIDGYFKSQNMKSAFDVYEEM 123 (223)
Q Consensus 99 ~~~~l~~~~~~~~~~~~a~~~~~~~ 123 (223)
.+.-....+.+.|.|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4455666777778888877666554
No 373
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.25 E-value=86 Score=18.05 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhC
Q 027412 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (223)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (223)
+.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444455555555555555554444
No 374
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.61 E-value=1.8e+02 Score=21.56 Aligned_cols=85 Identities=8% Similarity=0.090 Sum_probs=53.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCC----------------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 027412 33 IICGYCSLNRLDEAVQLFEKLTCVQ----------------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK----- 91 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 91 (223)
++.+.....+.+++.+.++.+...- ..........+...|...|+.+.|..++++....
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 3445566778889999988764321 1223455667788888999999999999887642
Q ss_pred CCCcc--HHHHHHHHHHHHhhCChhHHH
Q 027412 92 GPKAN--VVTYSCLIDGYFKSQNMKSAF 117 (223)
Q Consensus 92 ~~~~~--~~~~~~l~~~~~~~~~~~~a~ 117 (223)
++.|. ...|......+...+++..+.
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y 189 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFY 189 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 23332 234555555555666665543
No 375
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.99 E-value=85 Score=21.65 Aligned_cols=170 Identities=10% Similarity=-0.022 Sum_probs=77.4
Q ss_pred cccCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHH
Q 027412 4 KECHLDAALKLFGQLTDRGLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (223)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (223)
+..+..+..+++..- ++. .|..-.+ .+...+..|+.+-+..+++. |..++..--...+...+..|+.+-+.
T Consensus 8 ~~~~~~~v~~lL~~~---~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 8 NTWKSKQLKSFLSSK---DTFKADVHGHS-ASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GGCCHHHHHHHHHST---TTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred HhcCHHHHHHHHHhC---CCCccCCCCCC-HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 445555555555432 221 1222222 33445567777766555544 32222111122444555667766554
Q ss_pred HHHHHHHhcCCCccH---HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChh---HHHHHHHHHHhcCCHHHHHHHHH
Q 027412 83 MMFSKMLEKGPKANV---VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIV---SYSILIDGLCKRGLMEEALYAFH 156 (223)
Q Consensus 83 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~ 156 (223)
.++ +.|..++. .-++ .+...+..|+.+-+.-+++. |..++.. -+...+...+..|+.+-+..++
T Consensus 80 ~Ll----~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll- 149 (285)
T 3kea_A 80 ILL----FSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL- 149 (285)
T ss_dssp HHH----HTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH-
T ss_pred HHH----HCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH-
Confidence 444 34443332 2223 23344566776655555544 3333321 2123444456677766555444
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 027412 157 CALDNHLLP-DVVTYAILIRGYCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 157 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 194 (223)
+.|..+ +...-.+.+...+..|..+-+..+++.-.
T Consensus 150 ---~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 150 ---SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp ---TTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 434322 11011233444456677766665555433
No 376
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.77 E-value=64 Score=16.12 Aligned_cols=11 Identities=27% Similarity=0.151 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 027412 148 MEEALYAFHCA 158 (223)
Q Consensus 148 ~~~a~~~~~~~ 158 (223)
++.|++++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 377
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.67 E-value=2.5e+02 Score=22.81 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=14.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 027412 139 IDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~~~ 159 (223)
..-+...|++++|..+|.-..
T Consensus 450 A~~ae~~G~~~dAi~LY~La~ 470 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAE 470 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHhc
Confidence 345567788888888886554
No 378
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.47 E-value=21 Score=21.71 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=10.8
Q ss_pred HHHHhcCchhHHHHHHHH
Q 027412 35 CGYCSLNRLDEAVQLFEK 52 (223)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~ 52 (223)
...+..|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 344556666666666655
No 379
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=27.33 E-value=1.3e+02 Score=19.62 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=10.0
Q ss_pred HHHHHHhcCchhHHHHHHHHH
Q 027412 33 IICGYCSLNRLDEAVQLFEKL 53 (223)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~ 53 (223)
+|.++...|++++|.+++.++
T Consensus 38 vI~GLlql~~ydea~~yI~~~ 58 (192)
T 1ixm_A 38 LIKGNLSLQKYDRVFEMIEEM 58 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 344444445555554444444
No 380
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=27.07 E-value=1.8e+02 Score=20.98 Aligned_cols=112 Identities=8% Similarity=0.043 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhcC---CC---ccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 027412 79 DDATMMFSKMLEKG---PK---ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEAL 152 (223)
Q Consensus 79 ~~a~~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 152 (223)
+.|..+|..+...- .. +........+..+.+.-+++ +++.+.+.|+.|...++.-++..+.+.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~----L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQ----VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHH----HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 45666676665531 11 12222233344444444443 5556667788888888888888888888899999
Q ss_pred HHHHHHHhCCCCCC-HHHH--HHHHHH----HHhcCCcchHHHHHHHHH
Q 027412 153 YAFHCALDNHLLPD-VVTY--AILIRG----YCKAGRPTEAMQLYDSML 194 (223)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~--~~l~~~----~~~~g~~~~a~~~~~~~~ 194 (223)
.+|+.+...|.... ...+ .+++.. .....++++...++..+.
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Confidence 99999998765432 2222 222222 233567777777666543
No 381
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=27.03 E-value=90 Score=17.60 Aligned_cols=9 Identities=33% Similarity=0.420 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027412 115 SAFDVYEEM 123 (223)
Q Consensus 115 ~a~~~~~~~ 123 (223)
+|+.+..-|
T Consensus 15 KALDFI~~M 23 (115)
T 2es9_A 15 KALDFIGGM 23 (115)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHhccc
Confidence 344443333
No 382
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.96 E-value=1.5e+02 Score=19.96 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=26.2
Q ss_pred HHHHHHHHHh---cCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 027412 30 YNTIICGYCS---LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76 (223)
Q Consensus 30 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (223)
+..+|+++.+ -.+.+.|+-++-+|.+.|-.|.-..-..++.+.-..|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3344444443 3567777777777777765555554454444444433
No 383
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.68 E-value=2e+02 Score=21.36 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC----------------CCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-----
Q 027412 68 LIDAFCKEGRMDDATMMFSKMLEKG----------------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----- 126 (223)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 126 (223)
++.......+.+++.+.++.+...- ..+.......+...|...++.+.|..++++....
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 4455666788999999988764321 1223445566778889999999999999888632
Q ss_pred CCCCC--hhHHHHHHHHHHhcCCHHHHHHH
Q 027412 127 NISPN--IVSYSILIDGLCKRGLMEEALYA 154 (223)
Q Consensus 127 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 154 (223)
++.|. ...|......+...+++..+...
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~ 191 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYT 191 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 23332 23455556666667777665544
No 384
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.55 E-value=2.2e+02 Score=21.98 Aligned_cols=140 Identities=14% Similarity=0.049 Sum_probs=85.0
Q ss_pred cCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 027412 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85 (223)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (223)
.+.+-|+++- .+.|++--...|..-...+...|++++|-++--.... |+-.++.|.+.+-..-...|+..--+.+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 3455454443 3345555566677778888999999999988877653 34447777766655555567777778888
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
.-+.+.|.- +..---.+++.-...|+.+-..+++.+= .+..+.. ..-++ +..+..-|..+|.+.
T Consensus 419 ~~Ll~~g~L-n~~ESlEl~r~vL~q~r~~llekWl~e~---KL~~SEe-LGDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQGQL-NKYESLELCRPVLQQGRKQLLEKWLKED---KLECSEE-LGDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHT---CSCCCHH-HHHHH----HHHCSHHHHHHHHHH
T ss_pred HHHhccCcc-chHHhhHHhHHHHhccHHHHHHHHHhcC---CccccHH-hHhhh----hhcCHHHHHHHHHHc
Confidence 888877643 4444444666667777766666655432 2233322 22222 333556666666544
No 385
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.49 E-value=1.3e+02 Score=19.14 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 027412 65 FTILIDAFCKEGRMDDATMMFSKML 89 (223)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (223)
...++.-|...++.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788888889999888888875
No 386
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.38 E-value=1.8e+02 Score=20.79 Aligned_cols=134 Identities=10% Similarity=0.109 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHHhCC-----CCCcHHHHH---HHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCCh
Q 027412 42 RLDEAVQLFEKLTCVQ-----LKPNSITFT---ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (223)
Q Consensus 42 ~~~~a~~~~~~~~~~~-----~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (223)
+-++|...+..+.... ..|+..... ..+..+.+.-+ -++++.+.+.++.|...++.-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 4567888888876431 233322211 12222223222 24667777888888888888888888888889
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 027412 114 KSAFDVYEEMCENNISPNIVSYSILIDG----LCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKAGR 182 (223)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 182 (223)
+.+..+++.+...|...-..+..+++.. .....+.++....+...... .+......++.-......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhCCc
Confidence 9999999999887643211111222222 22345788888888764322 344445555544444443
No 387
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.05 E-value=1.5e+02 Score=19.77 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027412 136 SILIDGLCKRGLMEEALYAFHCALDN 161 (223)
Q Consensus 136 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 161 (223)
-..+..|.+.|.+++|.+++++....
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcC
Confidence 34566788999999999999986544
No 388
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=24.55 E-value=79 Score=17.31 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=18.1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027412 128 ISPNIVSYSILIDGLCKRGLMEEALYAFHCA 158 (223)
Q Consensus 128 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 158 (223)
++|++.||+-+...+.+..-..++..+.+++
T Consensus 32 LPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 32 IPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp CCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4666777776666655555455555555443
No 389
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.36 E-value=2.1e+02 Score=20.99 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCC
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN---SITFTILIDAFCKEGR--MDDATMMFSKMLEKGP 93 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 93 (223)
....++.-|...|+.++|...++++. .|+ ......++......++ -+.+..++..+...+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 45678889999999999999999985 232 2333334444444333 2345556666665544
No 390
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.35 E-value=2e+02 Score=20.66 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHhcC-----CCcc---HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH
Q 027412 78 MDDATMMFSKMLEKG-----PKAN---VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLME 149 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 149 (223)
-++|..+|..+.... ..++ ...+...+..+.+..+++ +++.+.+.|+.|...++.-++..+.+.=.++
T Consensus 170 E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~----L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 245 (334)
T 2qq8_A 170 TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPK----LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD 245 (334)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHH----HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred HHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHH----HHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence 456777776665421 1112 222222333344433433 4556666777888778777777777777788
Q ss_pred HHHHHHHHHHhCC
Q 027412 150 EALYAFHCALDNH 162 (223)
Q Consensus 150 ~a~~~~~~~~~~~ 162 (223)
.+..+|+.+...|
T Consensus 246 ~~lriWD~~l~eg 258 (334)
T 2qq8_A 246 LACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 8888888877655
No 391
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=23.92 E-value=32 Score=17.46 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=9.6
Q ss_pred cCHHHHHHHHHHH
Q 027412 6 CHLDAALKLFGQL 18 (223)
Q Consensus 6 g~~~~A~~~~~~~ 18 (223)
-+++.|...|...
T Consensus 33 Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 33 WNYEVAIKGFQSS 45 (57)
T ss_dssp TCSHHHHHHHHHS
T ss_pred CCHHHHHHHHHHH
Confidence 3677788888775
No 392
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.88 E-value=1.5e+02 Score=18.90 Aligned_cols=140 Identities=8% Similarity=-0.085 Sum_probs=84.4
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHH
Q 027412 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (223)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (223)
++...-...+..+...+..+.. ..+..+.. .++..+-...+.++.+.++.+. ...+..+.. .++...-...+
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAA 128 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 4666666666777777765444 44444443 4577777777888888887644 444444443 34555556667
Q ss_pred HHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 027412 105 DGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCALDNHLLPDVVTYAILIRGYCKA 180 (223)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
.++...++.+ +...+..+.. .++..+-...+.++.+.|.. .+...+..+.+. ++...-...+.++.+.
T Consensus 129 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 129 FALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 7777777644 4555555554 35777778888888888774 456666665543 4555544455554443
No 393
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=23.56 E-value=1.6e+02 Score=21.22 Aligned_cols=110 Identities=11% Similarity=0.170 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHhCC-----CCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCCh
Q 027412 42 RLDEAVQLFEKLTCVQ-----LKPN---SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (223)
Q Consensus 42 ~~~~a~~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (223)
+-++|...|..+.+.- ..++ ...+...+..+.+..++ ++++.+.+.++.|...++.-++..+.+.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 3456777777665421 1222 22222233333333333 3666777788888888888888888888889
Q ss_pred hHHHHHHHHHHHCCCCCChhHHH---HHHHHH---HhcCCHHHHHHHHHHH
Q 027412 114 KSAFDVYEEMCENNISPNIVSYS---ILIDGL---CKRGLMEEALYAFHCA 158 (223)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~---~~~~~~~~a~~~~~~~ 158 (223)
+.+..+++.+...|. ...+. +++..+ .-..++++...++..+
T Consensus 245 ~~~lriWD~~l~eg~---~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~l 292 (334)
T 2qq8_A 245 DLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTRL 292 (334)
T ss_dssp HHHHHHHHHHHHHCH---HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence 999999999987662 22222 122111 1234677777776543
No 394
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.50 E-value=1.9e+02 Score=20.15 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=24.7
Q ss_pred ccCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-cCchhHHHHHHHH
Q 027412 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS-LNRLDEAVQLFEK 52 (223)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~ 52 (223)
.+++++..+..+.+...+...+..-.|.|-.+|-+ -|....+.+++..
T Consensus 44 aeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiiss 92 (261)
T 3ubw_A 44 AERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 92 (261)
T ss_dssp TTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhH
Confidence 45566666666666655555555555555555432 2333344444433
No 395
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.73 E-value=1.6e+02 Score=19.86 Aligned_cols=18 Identities=0% Similarity=0.104 Sum_probs=9.2
Q ss_pred HhcCChhHHHHHHHHHHh
Q 027412 73 CKEGRMDDATMMFSKMLE 90 (223)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~ 90 (223)
+..|+.+.+..+++....
T Consensus 21 ~~~g~~~~v~~Ll~~~~~ 38 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQR 38 (273)
T ss_dssp HHTTCSSTTTTHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhh
Confidence 345555555555554443
No 396
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=21.73 E-value=1.3e+02 Score=17.52 Aligned_cols=17 Identities=18% Similarity=-0.017 Sum_probs=10.3
Q ss_pred HHhcCCHHHHHHHHHHH
Q 027412 142 LCKRGLMEEALYAFHCA 158 (223)
Q Consensus 142 ~~~~~~~~~a~~~~~~~ 158 (223)
..+.|++++|.+.+++.
T Consensus 30 ~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 45666666666666544
No 397
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=21.47 E-value=2.1e+02 Score=19.94 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 027412 29 TYNTIICGYCSLNRLDEAVQLFEKLT 54 (223)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (223)
.-|.+++-|...|+++.|.++++++.
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp 61 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIP 61 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCC
Confidence 34788899999999999999999764
No 398
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=21.42 E-value=39 Score=20.12 Aligned_cols=34 Identities=18% Similarity=-0.084 Sum_probs=11.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027412 127 NISPNIVSYSILIDGLCKRGLMEEALYAFHCALD 160 (223)
Q Consensus 127 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 160 (223)
|+.|.......+=....-..+-++|..++++++.
T Consensus 13 ~~~~~~~~M~~LKWFsGGkER~~~Ai~II~~Ll~ 46 (118)
T 2zrr_A 13 GLVPRGSHMSNLKWFSGGDDRRKKAEVIITELLD 46 (118)
T ss_dssp -----------------CCCHHHHHHHHHHHHHH
T ss_pred CcCcCccccccceeccCCHHHHHHHHHHHHHHHH
Confidence 3444444443333333345566777777777664
No 399
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=21.10 E-value=1.3e+02 Score=17.40 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=8.9
Q ss_pred HHhcCCHHHHHHHHHHH
Q 027412 142 LCKRGLMEEALYAFHCA 158 (223)
Q Consensus 142 ~~~~~~~~~a~~~~~~~ 158 (223)
..+.|++++|.+.+++.
T Consensus 28 ~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 34555555555555443
No 400
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=20.53 E-value=2.3e+02 Score=19.86 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=37.3
Q ss_pred HHHhcCChhHHHHHHHHHHhc-CCCccHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 027412 71 AFCKEGRMDDATMMFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (223)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 124 (223)
.|....++.....++..|... ..+|+......++++|.+.-+-..|.+.+....
T Consensus 182 iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 333344555566666666553 345678888888899998888888888887654
No 401
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=20.25 E-value=1.3e+02 Score=19.32 Aligned_cols=108 Identities=8% Similarity=0.020 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH-
Q 027412 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIVSYSILIDGLCKRGLMEEALYAFH- 156 (223)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~- 156 (223)
.+-|.++++.+..+|-.|+...... -..++++...+.++...... .--...++.+...+...+|+.. ..+++
T Consensus 60 ~~HA~kl~~~i~~rgg~~~l~~i~~-----p~~~~~~~~~e~le~aL~~E-k~v~~~l~~l~~la~~~~D~~t-~~fLe~ 132 (176)
T 3ka8_A 60 REHAEKFMKYQNKRGGRVVLQDIKK-----PERDEWGNTLEAMQAALQLE-KTVNQALLDLHKLATDKVDPHL-CDFLES 132 (176)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCCCC-----CSCSCCCSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeeCcccC-----CCccccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCChhH-HHHHHH
Confidence 3456666666666654433211100 01223344444444443321 1123345555555656666533 33333
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCc--chHHHHHHHH
Q 027412 157 CALDNHLLPDVVTYAILIRGYCKAGRP--TEAMQLYDSM 193 (223)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~ 193 (223)
..++..+ -........+.-+.+.|.. ..+.-+|++.
T Consensus 133 ~fl~eQv-e~~~~l~~~l~~l~~~g~~~~~~g~ylfD~~ 170 (176)
T 3ka8_A 133 EYLEEQV-KHIKRIGDFITNLKRLGLPENGMGEYLFDKH 170 (176)
T ss_dssp HTHHHHH-HHHHHHHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhcCCCCCCccHHHhCHH
Confidence 2333222 1334445555555555543 3444555543
No 402
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.21 E-value=1.9e+02 Score=18.78 Aligned_cols=56 Identities=13% Similarity=-0.059 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC
Q 027412 140 DGLCKRGLMEEALYAFHCALDNHLLPDV---VTYAILIRGYCKAGRPTEAMQLYDSMLRNGIMP 200 (223)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 200 (223)
...+..|+.+-+..++ +.|..++. .-. +.+...+..|+.+-+..+++.+.+.|..+
T Consensus 126 ~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 126 SFAACVGSEEIVRLLI----EHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCHHHHHHHH----HTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHcCCHHHHHHHH----HCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3344566665554444 33433321 111 23344456677777777777777776544
No 403
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=20.15 E-value=1.9e+02 Score=18.72 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhCChhHHHHHHH
Q 027412 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121 (223)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 121 (223)
..+.|..+++.+...|..|....... -...+....+.++.....-.. -...++.+...+...+|+.- ..+++
T Consensus 59 E~~HA~~l~~~i~~~Gg~~~l~~i~~------p~~~~~~~~e~le~aL~~Ek~-v~~~l~~l~~la~~~~D~~t-~~fLe 130 (184)
T 3qz3_A 59 EMQHMQRLFTYVSETGALPILGAIAA------PRHDFASLGEVFRETYQHEQK-ITQQINKLAHVAFTSQDYST-FNFLQ 130 (184)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBCC------CCCCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccCCCCC------cccCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHhH-HHHHH
Confidence 45778888888888875554211000 012333444444444332111 23455666666666666543 23333
Q ss_pred HHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027412 122 EMCENNISPNIVSYSILIDGLCKRGLMEEALYAFHCAL 159 (223)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 159 (223)
.+.+.. .-....+..++.-+.+.|.-..+.-+|++..
T Consensus 131 ~fl~EQ-ve~~~~l~~~l~~l~~~g~~~~~~~~~D~~l 167 (184)
T 3qz3_A 131 WYVAEQ-HEEEKLFKGILDKLELVGEDGKALFFIDKDL 167 (184)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhCCCCcchhHHhHHH
Confidence 333221 1123344445555555555455555665543
Done!