Query 027413
Match_columns 223
No_of_seqs 137 out of 196
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 09:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02601 beta-carotene hydroxy 100.0 3.4E-83 7.4E-88 573.3 16.8 217 1-222 1-220 (303)
2 PF04116 FA_hydroxylase: Fatty 98.4 1.6E-07 3.4E-12 69.2 2.3 37 143-180 2-41 (114)
3 PLN02434 fatty acid hydroxylas 92.3 0.43 9.4E-06 42.9 6.6 41 138-178 83-133 (237)
4 COG3000 ERG3 Sterol desaturase 91.8 1.3 2.9E-05 39.2 9.0 37 139-175 96-133 (271)
5 PLN02869 fatty aldehyde decarb 90.6 0.45 9.8E-06 48.2 5.4 56 146-201 135-199 (620)
6 PF11947 DUF3464: Protein of u 87.5 1.7 3.6E-05 37.1 5.9 62 78-150 51-115 (153)
7 TIGR02230 ATPase_gene1 F0F1-AT 87.0 1.7 3.7E-05 34.7 5.4 66 89-158 30-98 (100)
8 KOG0872 Sterol C5 desaturase [ 78.1 7.4 0.00016 36.8 6.6 43 129-174 122-165 (312)
9 TIGR02908 CoxD_Bacillus cytoch 68.5 30 0.00065 28.3 7.2 40 116-155 69-110 (110)
10 COG1230 CzcD Co/Zn/Cd efflux s 65.8 16 0.00035 34.0 5.9 98 84-199 69-180 (296)
11 PRK10019 nickel/cobalt efflux 63.3 16 0.00035 33.7 5.3 42 111-153 69-111 (279)
12 PRK03557 zinc transporter ZitB 62.4 34 0.00074 30.9 7.2 96 84-199 66-178 (312)
13 PF04678 DUF607: Protein of un 57.7 36 0.00078 28.8 6.1 58 86-156 84-142 (180)
14 PF06072 Herpes_US9: Alphaherp 57.1 19 0.0004 27.0 3.8 27 78-104 12-39 (60)
15 COG0053 MMT1 Predicted Co/Zn/C 51.3 23 0.0005 32.3 4.3 116 84-210 60-183 (304)
16 TIGR01297 CDF cation diffusion 44.1 24 0.00051 30.0 3.0 107 84-201 37-153 (268)
17 PF06738 DUF1212: Protein of u 41.0 2E+02 0.0044 23.6 10.5 58 84-151 87-144 (193)
18 PRK02251 putative septation in 38.2 67 0.0014 25.4 4.4 43 99-146 33-80 (87)
19 KOG2475 CDC45 (cell division c 33.2 70 0.0015 32.8 4.7 21 115-135 199-220 (587)
20 PF04834 Adeno_E3_14_5: Early 32.9 38 0.00081 27.4 2.3 32 91-122 16-48 (97)
21 PRK09509 fieF ferrous iron eff 29.9 74 0.0016 28.3 3.9 106 84-201 58-174 (299)
22 PRK11463 fxsA phage T7 F exclu 29.2 1.4E+02 0.0031 24.9 5.2 29 119-147 55-83 (148)
23 PF11674 DUF3270: Protein of u 29.1 24 0.00053 27.9 0.7 36 185-221 47-82 (90)
24 PF13347 MFS_2: MFS/sugar tran 27.7 3.5E+02 0.0076 24.3 7.8 58 97-159 229-287 (428)
25 COG5547 Small integral membran 27.4 27 0.00057 26.3 0.6 34 187-221 14-47 (62)
26 PF09925 DUF2157: Predicted me 26.5 3.1E+02 0.0068 21.9 6.7 17 96-112 35-51 (145)
27 PF04186 FxsA: FxsA cytoplasmi 26.5 1.7E+02 0.0037 23.5 5.1 31 117-147 49-79 (119)
28 PF01925 TauE: Sulfite exporte 26.3 3.5E+02 0.0077 22.3 7.1 33 127-159 188-220 (240)
29 PF03824 NicO: High-affinity n 26.2 3.8E+02 0.0083 23.6 7.7 60 97-156 39-103 (282)
30 TIGR02847 CyoD cytochrome o ub 26.0 2.3E+02 0.005 22.4 5.6 50 111-173 43-93 (96)
31 PF08426 ICE2: ICE2; InterPro 25.2 1.6E+02 0.0035 29.1 5.6 52 91-144 145-198 (412)
32 PRK13755 putative mercury tran 24.8 99 0.0021 26.5 3.6 93 97-220 11-112 (139)
33 PF04688 Phage_holin: Phage ly 24.0 1.2E+02 0.0026 21.2 3.3 28 129-156 4-31 (47)
34 KOG0873 C-4 sterol methyl oxid 23.8 2.2E+02 0.0048 26.9 5.9 73 112-187 94-169 (283)
35 PF03334 PhaG_MnhG_YufB: Na+/H 23.4 2.7E+02 0.0058 20.9 5.4 55 99-158 27-81 (81)
36 PF00664 ABC_membrane: ABC tra 23.3 3.3E+02 0.0071 21.1 6.0 19 124-142 250-268 (275)
37 PF06781 UPF0233: Uncharacteri 23.0 1.9E+02 0.004 22.8 4.6 45 98-147 31-81 (87)
38 KOG0874 Sphingolipid hydroxyla 22.9 95 0.0021 29.1 3.4 32 142-174 126-160 (287)
39 PRK00159 putative septation in 21.8 1.8E+02 0.0038 23.1 4.2 44 99-147 32-81 (87)
40 PRK10929 putative mechanosensi 21.7 4.5E+02 0.0098 29.0 8.5 64 97-160 787-861 (1109)
41 cd01060 Membrane-FADS-like The 21.5 1.8E+02 0.0039 21.3 4.1 14 151-165 14-27 (122)
42 PF10176 DUF2370: Protein of u 21.2 65 0.0014 29.4 2.0 36 181-221 84-129 (233)
43 COG3030 FxsA Protein affecting 20.7 2.1E+02 0.0045 24.8 4.8 33 115-147 52-84 (158)
No 1
>PLN02601 beta-carotene hydroxylase
Probab=100.00 E-value=3.4e-83 Score=573.32 Aligned_cols=217 Identities=55% Similarity=0.947 Sum_probs=189.3
Q ss_pred CCCcccc-ccccccccccccCcCCCCCCcceeecCCCcccccccCCCCCceeEEEEeecCCCCC-ccccchhhhhhhhhc
Q 027413 1 MASGMSS-ANSSVVTYLLGRNTFFTGKAISKAIIPRSSLRQGTQKRKPKSLSMCFVTEDKNEGT-TKVEKKTFVQAQNEI 78 (223)
Q Consensus 1 ma~g~s~-a~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~r~~~~~vcfv~e~~~~~~-~~~~~~~~~~~~~~~ 78 (223)
||+|+|+ |.|++| +++..+..+.|.+...|+|+ .+. .+.||+++++||||+||+++.+ .+.+++++++++++.
T Consensus 1 ma~~~~~~~~t~~~---l~~~~~~~~~~~~~~~f~~~-~~~-~~~~~~~~~~~c~v~~~~~~~~~~~~~~~~~~~~~~~~ 75 (303)
T PLN02601 1 MAAGLSTIAVTLKP---LHRSDFRLNHPISLAVFPPS-LRF-NGFRRRKILTVCFVVEERKQSSPMENDEKPESTTSSSE 75 (303)
T ss_pred Cccccccccccccc---CcccCccCCCCcccccCCHH-HHh-hhcccCCceeEEEEeccccccccccccchhhhhhhhhh
Confidence 8999999 899999 55445555556557778886 222 2446677799999999998876 344333322333344
Q ss_pred cccC-hHHHHHHhhhhhhhHHHHHHHHHhhchhHHHHHHHhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 79 KFFS-PAEERQARKRSERQTYLVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFWARWAH 157 (223)
Q Consensus 79 ~~~~-~~~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~aH 157 (223)
++++ +++||++|||+||+||++||||||+||||||++||||||+|||||||||+.||++++++++|||++|||||||+|
T Consensus 76 ~~~~~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf~Aw~aH 155 (303)
T PLN02601 76 ILMTSRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEFWARWAH 155 (303)
T ss_pred hhhHHHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhccCCCCCCCCCccchhhhhhhHHHHHHHHHhhhccCCCcchhhhhhhcccccc
Q 027413 158 RALWHASLWHMHKSHHKPRDGPFELNDIFAVINAVPAIALLSYGFFHKGIVPGLCFGAVLASSFS 222 (223)
Q Consensus 158 KylMHG~LW~lHksHH~p~~G~FE~NDlFaiifAvpAIaL~~~Gf~~~gl~~~lcfgaGlGITl~ 222 (223)
||+|||+||+||||||+|++|+||+||+|||+||+|||+||++|++++|++|++|||+|+|||+|
T Consensus 156 KYvMHG~LW~lH~sHH~Pr~g~FE~NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlGITlY 220 (303)
T PLN02601 156 RALWHDSLWNMHESHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLGITVF 220 (303)
T ss_pred HHHHHhcchhhhhhcCCCCCCCcccccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999987
No 2
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.39 E-value=1.6e-07 Score=69.20 Aligned_cols=37 Identities=41% Similarity=0.943 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhhhhhccCCCCC-CCCC
Q 027413 143 VGAAVGMEFWARWAHRALWH--ASLWHMHKSHHKPR-DGPF 180 (223)
Q Consensus 143 lgafvgMEf~Aw~aHKylMH--G~LW~lHksHH~p~-~G~F 180 (223)
+++++.+|++.|++|| +|| +++|.+|+.||+++ ..++
T Consensus 2 ~~~~l~~d~~~Y~~HR-l~H~~~~l~~~H~~HH~~~~~~~~ 41 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHR-LLHKIPFLWRIHKVHHSPKNPTPL 41 (114)
T ss_pred eeeHHHHHHHHHHHHH-HHhcCchHHHHHHHHhCCcccCch
Confidence 5678999999999999 999 68999999999764 4455
No 3
>PLN02434 fatty acid hydroxylase
Probab=92.30 E-value=0.43 Score=42.88 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------hhhhhhccCC-CCCCC
Q 027413 138 TFALSVGAAVGMEFWARWAHRALWHA---------SLWHMHKSHH-KPRDG 178 (223)
Q Consensus 138 t~ll~lgafvgMEf~Aw~aHKylMHG---------~LW~lHksHH-~p~~G 178 (223)
.+++++++++.-=+.-|..||++.|. ...-+|..|| .|.+.
T Consensus 83 ~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P~D~ 133 (237)
T PLN02434 83 VVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMDG 133 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCCCCC
Confidence 34445556666666778999999994 3456899999 45554
No 4
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=91.79 E-value=1.3 Score=39.21 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCCCC
Q 027413 139 FALSVGAAVGMEFWARWAHRALWHA-SLWHMHKSHHKP 175 (223)
Q Consensus 139 ~ll~lgafvgMEf~Aw~aHKylMHG-~LW~lHksHH~p 175 (223)
.+..+.+++.-|++-+|+||..=+. ++|..|+-||..
T Consensus 96 ~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~ 133 (271)
T COG3000 96 ALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSS 133 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCc
Confidence 4555668889999999999998777 679999999943
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=90.61 E-value=0.45 Score=48.20 Aligned_cols=56 Identities=29% Similarity=0.465 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhhhccCCCCC-CC-------CCccchhhhhhhHHHHHHHHHhh
Q 027413 146 AVGMEFWARWAHRALWHA-SLWHMHKSHHKPR-DG-------PFELNDIFAVINAVPAIALLSYG 201 (223)
Q Consensus 146 fvgMEf~Aw~aHKylMHG-~LW~lHksHH~p~-~G-------~FE~NDlFaiifAvpAIaL~~~G 201 (223)
+..+|++=+|.||..=|. ++|..|+-||... .. |||-.=.+.+++++|.+.+++.|
T Consensus 135 v~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g 199 (620)
T PLN02869 135 MGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTG 199 (620)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcc
Confidence 345899999999986565 5799999999653 22 33322234556777776655444
No 6
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=87.48 E-value=1.7 Score=37.11 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=39.2
Q ss_pred ccccChHHHHHHhhhhhhhHHHHHHHHHhhchhHHHHHHHhhhheecccC--cccchHHH-HHHHHHHHHHHHHHH
Q 027413 78 IKFFSPAEERQARKRSERQTYLVAAIVSSLGISSMAVLAIHHRFSWQTEG--CELQLLEM-FGTFALSVGAAVGME 150 (223)
Q Consensus 78 ~~~~~~~~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~~~~--g~~p~~eM-~~t~ll~lgafvgME 150 (223)
..|...|++|+.|+ |+-++||-....+++.-=|+|-.+. .|+|-.-. +.+++.+..+++|.-
T Consensus 51 ~~IP~~Vs~RM~rR-----------m~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGis 115 (153)
T PF11947_consen 51 SAIPEVVSNRMLRR-----------MAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGIS 115 (153)
T ss_pred cccCHHHHHHHHHH-----------HHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhh
Confidence 33444488888875 4556677666666666666666653 67877666 566666666666643
No 7
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=87.02 E-value=1.7 Score=34.69 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=36.8
Q ss_pred HhhhhhhhHHHHHHHHHhhchhHHHHHHHhhhheeccc---CcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 89 ARKRSERQTYLVAAIVSSLGISSMAVLAIHHRFSWQTE---GCELQLLEMFGTFALSVGAAVGMEFWARWAHR 158 (223)
Q Consensus 89 ~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~~~---~g~~p~~eM~~t~ll~lgafvgMEf~Aw~aHK 158 (223)
|||+.+|..+.--+.+|++|+.-.+...+-+=.=+-++ +++..+ ...++++|.++|+=.+=.|+||
T Consensus 30 a~r~~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~----tl~~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 30 ARKNATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSW----TLTMLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 44446788899999999999865443332222222232 333322 2335566666666555556655
No 8
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=78.10 E-value=7.4 Score=36.80 Aligned_cols=43 Identities=33% Similarity=0.485 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCCC
Q 027413 129 ELQLLEMFGTFALSVGAAVGMEFWARWAHRALWHA-SLWHMHKSHHK 174 (223)
Q Consensus 129 ~~p~~eM~~t~ll~lgafvgMEf~Aw~aHKylMHG-~LW~lHksHH~ 174 (223)
|.||.+-+..+.+++ +.-||.-.|+||.+=|. +-|.+|+-||.
T Consensus 122 ~~gw~~~~~~i~~fl---fF~Df~iYw~HR~lH~~~vy~~LH~~HH~ 165 (312)
T KOG0872|consen 122 EYGWFLLFVSIFLFL---FFTDFGIYWAHRELHHRGVYKRLHKPHHI 165 (312)
T ss_pred cccHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHhhhcchhhh
Confidence 777777666655543 56789999999999776 56999999994
No 9
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=68.50 E-value=30 Score=28.33 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHhhhheecccC--cccchHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 116 AIHHRFSWQTEG--CELQLLEMFGTFALSVGAAVGMEFWARW 155 (223)
Q Consensus 116 a~y~rf~~~~~~--g~~p~~eM~~t~ll~lgafvgMEf~Aw~ 155 (223)
.|..+|.-||+. -+.+..=|+..+++.+-+.+.-..|.||
T Consensus 69 ~VqL~yFLHm~~k~~~~~~~~if~gi~va~~tv~a~~~~iw~ 110 (110)
T TIGR02908 69 AFQLYYFMHMKDKGHEVPAQFIYGGVFVTMLVVLAFTTITWW 110 (110)
T ss_pred HHHHHHheeeCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456788888863 4566666688888888888888888885
No 10
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=65.79 E-value=16 Score=34.00 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=57.0
Q ss_pred HHHHHHhhhh-hhhHH------HHHHHHHhhchhHHHHHHHh---hhheecccCcccchHHHHHHHHHHHHHHHHHHHHH
Q 027413 84 AEERQARKRS-ERQTY------LVAAIVSSLGISSMAVLAIH---HRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFWA 153 (223)
Q Consensus 84 ~~~~~~rk~~-er~ty------~~aa~~ss~gi~~~a~~a~y---~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~A 153 (223)
+|.+++||++ .|+|| ..+|..+.+-+...++.-+| .||. +.-+++..+|+..-++ +.+.==+.+
T Consensus 69 ~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~---~P~~i~~~~ml~va~~---GL~vN~~~a 142 (296)
T COG1230 69 IAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLL---APPPIHYSGMLVVAII---GLVVNLVSA 142 (296)
T ss_pred HHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCccchHHHHHH---HHHHHHHHH
Confidence 7888888775 44676 45777777666666665555 5664 4557777888432222 222222223
Q ss_pred HHHHHHHHHhhhhhhhccCC--CCCCC-CCc-cchhhhhhhHHHHHHHHH
Q 027413 154 RWAHRALWHASLWHMHKSHH--KPRDG-PFE-LNDIFAVINAVPAIALLS 199 (223)
Q Consensus 154 w~aHKylMHG~LW~lHksHH--~p~~G-~FE-~NDlFaiifAvpAIaL~~ 199 (223)
|-+|++|| ..-+| .+. .+|...=+-++.+-.++.
T Consensus 143 ------------~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~ 180 (296)
T COG1230 143 ------------LLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVIR 180 (296)
T ss_pred ------------HHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666644 22244 444 499988777776655543
No 11
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=63.26 E-value=16 Score=33.66 Aligned_cols=42 Identities=10% Similarity=0.106 Sum_probs=22.2
Q ss_pred HHHHHHHhhhheecccCcccchHHHH-HHHHHHHHHHHHHHHHH
Q 027413 111 SMAVLAIHHRFSWQTEGCELQLLEMF-GTFALSVGAAVGMEFWA 153 (223)
Q Consensus 111 ~~a~~a~y~rf~~~~~~g~~p~~eM~-~t~ll~lgafvgMEf~A 153 (223)
-+++...+.+..+.++ ..-|+.|.. +.+++.+|....-..+-
T Consensus 69 v~~~~~~~l~~~~~~~-~~~~~le~~S~~lii~lGl~ll~r~~r 111 (279)
T PRK10019 69 LIAFGGMYLSRRFTAQ-SAEPWLQLISAVIIISTAFWMFWRTWR 111 (279)
T ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444554433332 345899995 45555566665555443
No 12
>PRK03557 zinc transporter ZitB; Provisional
Probab=62.37 E-value=34 Score=30.90 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=47.5
Q ss_pred HHHHHHhhhh-h-------hhHHHHHHHHHhhchhHHHHHHHh---hhheecccCcccchHHHHHHHHHHHHHHHHHHHH
Q 027413 84 AEERQARKRS-E-------RQTYLVAAIVSSLGISSMAVLAIH---HRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFW 152 (223)
Q Consensus 84 ~~~~~~rk~~-e-------r~ty~~aa~~ss~gi~~~a~~a~y---~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~ 152 (223)
++.|+++|+. | |..++. +...++.+...++..+| .|+ .++-+++..-| +.+.+.+++.-++.
T Consensus 66 ~a~~~s~kp~d~~hpyG~~r~E~l~-al~~~~~l~~~~~~i~~eai~~l---~~~~~~~~~~~---~~v~~~~~~~~~~~ 138 (312)
T PRK03557 66 LAVQFSRRPPTIRHTFGWLRLTTLA-AFVNAIALVVITILIVWEAIERF---RTPRPVAGGMM---MAIAVAGLLANILS 138 (312)
T ss_pred HHHHHhcCCCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---cCCccccchHH---HHHHHHHHHHHHHH
Confidence 7788887764 4 344444 44444555555555544 344 23333332222 22334455666666
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCCCC------ccchhhhhhhHHHHHHHHH
Q 027413 153 ARWAHRALWHASLWHMHKSHHKPRDGPF------ELNDIFAVINAVPAIALLS 199 (223)
Q Consensus 153 Aw~aHKylMHG~LW~lHksHH~p~~G~F------E~NDlFaiifAvpAIaL~~ 199 (223)
.|+.+++ .+.+.... =+||++.-+-++.++.+..
T Consensus 139 ~~~~~~~-------------~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~ 178 (312)
T PRK03557 139 FWLLHHG-------------SEEKNLNVRAAALHVLGDLLGSVGAIIAALIII 178 (312)
T ss_pred HHHHhcc-------------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655432 11111122 2578877666666655443
No 13
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=57.66 E-value=36 Score=28.77 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=30.6
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhchhHHHHHHHhhhheecccCcccchHHH-HHHHHHHHHHHHHHHHHHHHH
Q 027413 86 ERQARKRSERQTYLVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQLLEM-FGTFALSVGAAVGMEFWARWA 156 (223)
Q Consensus 86 ~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~~eM-~~t~ll~lgafvgMEf~Aw~a 156 (223)
.+.++|+..|..+...+.++ +=+++.+|..|. +..|.=| =.|+.+..+++++. .+||.
T Consensus 84 d~~A~~~~~~~~w~gl~~l~-------~q~~~l~rLTf~----e~sWDvMEPVTYfv~~~~~i~~--y~yfl 142 (180)
T PF04678_consen 84 DEKAEKRARRLLWGGLALLV-------VQFGILARLTFW----EYSWDVMEPVTYFVGYGTSILG--YAYFL 142 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh----ccccchhhhHHHHHhHHHHHHH--HHHHH
Confidence 34445555555555544443 234455565554 5555556 45666666666544 45443
No 14
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=57.12 E-value=19 Score=26.95 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=17.3
Q ss_pred ccccChHHHHH-HhhhhhhhHHHHHHHH
Q 027413 78 IKFFSPAEERQ-ARKRSERQTYLVAAIV 104 (223)
Q Consensus 78 ~~~~~~~~~~~-~rk~~er~ty~~aa~~ 104 (223)
...+-++-++. ++|+..|++++..++.
T Consensus 12 ~~FL~RvGr~q~~~r~RrRrc~~~v~~v 39 (60)
T PF06072_consen 12 TEFLRRVGRQQHASRRRRRRCRLAVAIV 39 (60)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777 6777788888655443
No 15
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=51.35 E-value=23 Score=32.31 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=66.8
Q ss_pred HHHHHHhhhhhh--------hHHHHHHHHHhhchhHHHHHHHhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 84 AEERQARKRSER--------QTYLVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFWARW 155 (223)
Q Consensus 84 ~~~~~~rk~~er--------~ty~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~ 155 (223)
+.-|.++|+..| .-|+ ++...++.|...++...|.=+.--.. ..|..--...+.+.+++.+.||.+.++
T Consensus 60 ~~l~~s~kp~d~~HpyGh~k~E~l-~sl~~~~~i~~~g~~i~~~a~~~~~~--~~~~~~~~~~~~v~l~s~~~~~~l~~~ 136 (304)
T COG0053 60 IGLRISSKPPDRDHPYGHGKAETL-ASLIVSILIFAAGFEILLEAIKRLIS--PQPVEPPLLALGVALISIVIKEALYRY 136 (304)
T ss_pred HHHHHhcCCCCCCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 778888888755 2333 44444455555555544443332222 223333345667778899999999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCccchhhhhhhHHHHHHHHHhhhccCCCcch
Q 027413 156 AHRALWHASLWHMHKSHHKPRDGPFELNDIFAVINAVPAIALLSYGFFHKGIVPG 210 (223)
Q Consensus 156 aHKylMHG~LW~lHksHH~p~~G~FE~NDlFaiifAvpAIaL~~~Gf~~~gl~~~ 210 (223)
.+|.-=-- +|-=-..++.--++|++.-+-++.+++...+|+ +.+.+.
T Consensus 137 ~~~~~kk~------~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~~g~--~~lD~i 183 (304)
T COG0053 137 LRRVGKKT------NSQALIADALHHRSDVLTSLAVLVGLLGSLLGW--PWLDPL 183 (304)
T ss_pred HHHHHHHh------CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHH
Confidence 98753111 000001122222459999999999988777784 334444
No 16
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=44.06 E-value=24 Score=30.05 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=54.5
Q ss_pred HHHHHHhhh-hhhhHH------HHHHHHHhhchhHHHHHHHhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 84 AEERQARKR-SERQTY------LVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFWARWA 156 (223)
Q Consensus 84 ~~~~~~rk~-~er~ty------~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~a 156 (223)
++.|.++|+ .+|++| -+++...++.+..+++...|-=+..-+++.+.+.. ...+.+.+.+++...+.+|+.
T Consensus 37 ~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~ 114 (268)
T TIGR01297 37 LALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAIERLINPEPEIDG--GTMLIVAIVGLIVNLILALYL 114 (268)
T ss_pred HHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc--hhHHHHHHHHHHHHHHHHHHH
Confidence 667777766 344433 13444444545555555443222111333322221 122334455666667777666
Q ss_pred HHHHHHhhhhhhhccCCCC---CCCCCccchhhhhhhHHHHHHHHHhh
Q 027413 157 HRALWHASLWHMHKSHHKP---RDGPFELNDIFAVINAVPAIALLSYG 201 (223)
Q Consensus 157 HKylMHG~LW~lHksHH~p---~~G~FE~NDlFaiifAvpAIaL~~~G 201 (223)
.|. | +..+.+ .++.--.+|++.-+.++.++.+..+|
T Consensus 115 ~~~---~------~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~ 153 (268)
T TIGR01297 115 HRV---G------HRLGSLALRAAALHVLSDALSSVGVLIGALLIYFG 153 (268)
T ss_pred HHh---C------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 1 111111 13344578888888888888777777
No 17
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=41.03 E-value=2e+02 Score=23.57 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhchhHHHHHHHhhhheecccCcccchHHHHHHHHHHHHHHHHHHH
Q 027413 84 AEERQARKRSERQTYLVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQLLEMFGTFALSVGAAVGMEF 151 (223)
Q Consensus 84 ~~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf 151 (223)
..+|+++=+++...|-.-..+-+.|+.+.+.... -||. +.||+..+++.+...+...+
T Consensus 87 a~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~l--------fgg~--~~~~~~a~i~g~~~~~~~~~ 144 (193)
T PF06738_consen 87 AIERLDEIDREPPRYPPWLVILAAGLASAAFALL--------FGGS--WIDMIVAFILGLLVGLLRQL 144 (193)
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH--------HCCC--HHHHHHHHHHHHHHHHHHHH
Confidence 6667766666654454444444444444333221 2665 88998777776655544433
No 18
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=38.23 E-value=67 Score=25.40 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=30.5
Q ss_pred HHHHHHHhhchhHHHHHHHhhhheecccCcccchHHH-----HHHHHHHHHHH
Q 027413 99 LVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQLLEM-----FGTFALSVGAA 146 (223)
Q Consensus 99 ~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~~eM-----~~t~ll~lgaf 146 (223)
-++.+|-.+-++.++-+.|||= -+|++|+.+. +..|.+.+.+|
T Consensus 33 W~~~~m~~lm~~Gl~WlvvyYl-----~~~~~P~~~lG~WN~~IGfg~~~~G~ 80 (87)
T PRK02251 33 WFVPLFVALMIIGLIWLVVYYL-----SNGSLPIPALGAWNLVIGFGLIMAGF 80 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-----hCCCcCcccccchhHHHHHHHHHHHH
Confidence 4677888888999999999995 4688997665 34444444443
No 19
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=33.24 E-value=70 Score=32.82 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=14.7
Q ss_pred HHHhhhh-eecccCcccchHHH
Q 027413 115 LAIHHRF-SWQTEGCELQLLEM 135 (223)
Q Consensus 115 ~a~y~rf-~~~~~~g~~p~~eM 135 (223)
+-=||.+ .|+-+...+-+-||
T Consensus 199 l~eYy~~gt~~g~ss~~~lfel 220 (587)
T KOG2475|consen 199 LFEYYESGTWHGSSSAVTLFEL 220 (587)
T ss_pred HHHHHhcceeecCchHHHHHHH
Confidence 4468888 88877666666665
No 20
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=32.88 E-value=38 Score=27.38 Aligned_cols=32 Identities=28% Similarity=0.230 Sum_probs=23.7
Q ss_pred hhhhh-hHHHHHHHHHhhchhHHHHHHHhhhhe
Q 027413 91 KRSER-QTYLVAAIVSSLGISSMAVLAIHHRFS 122 (223)
Q Consensus 91 k~~er-~ty~~aa~~ss~gi~~~a~~a~y~rf~ 122 (223)
||+|- ..|++++.+.-+++.+...++.|+||-
T Consensus 16 ~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~ 48 (97)
T PF04834_consen 16 KKSDMPNYWLYAIGIVLVFCSTFFSLAIYPCFD 48 (97)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 55555 467777777777887888889998864
No 21
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=29.85 E-value=74 Score=28.33 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=47.1
Q ss_pred HHHHHHhhh-hhh-------hHHHHHHHHHhhchhHHHHHHHh---hhheecccCcccchHHHHHHHHHHHHHHHHHHHH
Q 027413 84 AEERQARKR-SER-------QTYLVAAIVSSLGISSMAVLAIH---HRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFW 152 (223)
Q Consensus 84 ~~~~~~rk~-~er-------~ty~~aa~~ss~gi~~~a~~a~y---~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~ 152 (223)
++-|+++|+ .+| ..|+. +...++-+..+++...| .|+ +++++.+...+ .+.+.+.+++...+.
T Consensus 58 ~~~~~s~k~~d~~~pyG~~r~E~l~-~l~~~~~l~~~~~~~~~esi~~l---~~~~~~~~~~~--~l~~~~~~~v~~~~~ 131 (299)
T PRK09509 58 LVVRYSLQPADDEHTFGHGKAESLA-ALAQSMFISGSALFLFLTGIQHL---ISPTPMNDPGV--GIIVTLVALICTLIL 131 (299)
T ss_pred HHHHHhCCCCCCCCCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---cCCCCCCcchh--HHHHHHHHHHHHHHH
Confidence 566777654 233 33443 33344444444444433 444 34555543333 222334455556665
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCCCCccchhhhhhhHHHHHHHHHhh
Q 027413 153 ARWAHRALWHASLWHMHKSHHKPRDGPFELNDIFAVINAVPAIALLSYG 201 (223)
Q Consensus 153 Aw~aHKylMHG~LW~lHksHH~p~~G~FE~NDlFaiifAvpAIaL~~~G 201 (223)
.++.++.. +. ++|---..++.==+||++.=..++.++.+..+|
T Consensus 132 ~~~~~~~~-~~-----~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~~g 174 (299)
T PRK09509 132 VTFQRWVV-RK-----TQSQAVRADMLHYQSDVMMNGAILLALGLSWYG 174 (299)
T ss_pred HHHHHHHH-HH-----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55444321 10 011000111122258888766555555555555
No 22
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=29.21 E-value=1.4e+02 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=20.7
Q ss_pred hhheecccCcccchHHHHHHHHHHHHHHH
Q 027413 119 HRFSWQTEGCELQLLEMFGTFALSVGAAV 147 (223)
Q Consensus 119 ~rf~~~~~~g~~p~~eM~~t~ll~lgafv 147 (223)
.|.-=+|..|+.|-.||+-.+++.+|+++
T Consensus 55 ~~~~~~~~~G~~p~~~l~~~~~~~~gg~L 83 (148)
T PRK11463 55 LRAQRKLARGELPAAELLDGLLLAVAGVL 83 (148)
T ss_pred HHHHHHHHCCCCcHHHHHHhHHHHHHHHH
Confidence 34334567899999999777777777664
No 23
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=29.11 E-value=24 Score=27.86 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=21.8
Q ss_pred hhhhhhHHHHHHHHHhhhccCCCcchhhhhhhccccc
Q 027413 185 IFAVINAVPAIALLSYGFFHKGIVPGLCFGAVLASSF 221 (223)
Q Consensus 185 lFaiifAvpAIaL~~~Gf~~~gl~~~lcfgaGlGITl 221 (223)
+|+|+.++.+..++..++ ++-+...+..++|+||+.
T Consensus 47 ~FcI~tvlfsFvfLs~kl-~t~~Af~~Ai~~Sl~~~~ 82 (90)
T PF11674_consen 47 FFCIFTVLFSFVFLSLKL-NTFWAFPLAILISLAITQ 82 (90)
T ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH
Confidence 466666777777777775 223334555666776653
No 24
>PF13347 MFS_2: MFS/sugar transport protein
Probab=27.65 E-value=3.5e+02 Score=24.29 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhchhHHHHHHH-hhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 97 TYLVAAIVSSLGISSMAVLAI-HHRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFWARWAHRA 159 (223)
Q Consensus 97 ty~~aa~~ss~gi~~~a~~a~-y~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~aHKy 159 (223)
.+.++..+..++...+..... |.++.+..++ . ......+..+++++++=+|.|...|+
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~----~-~~~~~~~~~~~~~v~~~~~~~l~~r~ 287 (428)
T PF13347_consen 229 ILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG----L-ISIFMLIFFVASIVGSPLWGRLSKRF 287 (428)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch----h-hHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555566655544434 4455554441 1 11333456777888888999888886
No 25
>COG5547 Small integral membrane protein [Function unknown]
Probab=27.44 E-value=27 Score=26.29 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHhhhccCCCcchhhhhhhccccc
Q 027413 187 AVINAVPAIALLSYGFFHKGIVPGLCFGAVLASSF 221 (223)
Q Consensus 187 aiifAvpAIaL~~~Gf~~~gl~~~lcfgaGlGITl 221 (223)
++++..+|+.++.+||+. -........+|++|-+
T Consensus 14 glvglliAili~t~GfwK-tilviil~~lGv~iGl 47 (62)
T COG5547 14 GLVGLLIAILILTFGFWK-TILVIILILLGVYIGL 47 (62)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 577889999999999865 3333333445555544
No 26
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=26.53 E-value=3.1e+02 Score=21.94 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=8.7
Q ss_pred hHHHHHHHHHhhchhHH
Q 027413 96 QTYLVAAIVSSLGISSM 112 (223)
Q Consensus 96 ~ty~~aa~~ss~gi~~~ 112 (223)
.-+.++|+.-.+||...
T Consensus 35 ~l~~lGall~~~gii~f 51 (145)
T PF09925_consen 35 ILLYLGALLLGLGIILF 51 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555543
No 27
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=26.45 E-value=1.7e+02 Score=23.52 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=23.0
Q ss_pred HhhhheecccCcccchHHHHHHHHHHHHHHH
Q 027413 117 IHHRFSWQTEGCELQLLEMFGTFALSVGAAV 147 (223)
Q Consensus 117 ~y~rf~~~~~~g~~p~~eM~~t~ll~lgafv 147 (223)
+..|.--+|..|+.|-.||+-.+.+.+|++.
T Consensus 49 ~~~~~~~~~~~g~~p~~~~~~~~~~~~gg~L 79 (119)
T PF04186_consen 49 ALRRLQQSLRQGEMPGEELLDGALLAVGGVL 79 (119)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence 3344444567899999999888888877765
No 28
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=26.30 E-value=3.5e+02 Score=22.33 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=25.7
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 127 GCELQLLEMFGTFALSVGAAVGMEFWARWAHRA 159 (223)
Q Consensus 127 ~g~~p~~eM~~t~ll~lgafvgMEf~Aw~aHKy 159 (223)
.|++++......+.+..++++|+-.=+|+.+|.
T Consensus 188 ~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i 220 (240)
T PF01925_consen 188 LGDVDWPMLLLSLILLPGAFLGAFLGAKLARKI 220 (240)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788998877777778888888888888776653
No 29
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=26.21 E-value=3.8e+02 Score=23.56 Aligned_cols=60 Identities=17% Similarity=0.049 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhchhHHHHHHHhhhheecc-----cCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 97 TYLVAAIVSSLGISSMAVLAIHHRFSWQT-----EGCELQLLEMFGTFALSVGAAVGMEFWARWA 156 (223)
Q Consensus 97 ty~~aa~~ss~gi~~~a~~a~y~rf~~~~-----~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~a 156 (223)
.-+.-+...|++.+.+++.-+..-+.-.- +-++....+.-+.+++.++....+.+-.+.-
T Consensus 39 ~g~~~~lg~s~~~~~~ai~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~llv~~~~~~~~~~~~~~ 103 (282)
T PF03824_consen 39 VGLFFGLGHSLTHGLSAILLVLLALWLSELSSFADVGSAVGLLVSGSFLLVIGIGNWLLLRRLRH 103 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666665554333222 1234444554467777777666666666543
No 30
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=25.96 E-value=2.3e+02 Score=22.41 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHHHHhhhheecccC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 027413 111 SMAVLAIHHRFSWQTEG-CELQLLEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHKSHH 173 (223)
Q Consensus 111 ~~a~~a~y~rf~~~~~~-g~~p~~eM~~t~ll~lgafvgMEf~Aw~aHKylMHG~LW~lHksHH 173 (223)
+.+=..|..+|--+|+. +|=.|.-+...|.+++...+ .=|++|-||.-||
T Consensus 43 A~iQi~vqL~~FlHl~~~~~~~~n~~~l~Ft~~i~~ii-------------v~GSiWIm~~l~~ 93 (96)
T TIGR02847 43 AVVQILVHLVFFLHLNTSSEQRWNLISLLFTILIIFIL-------------IGGSIWIMHNLNH 93 (96)
T ss_pred HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHHH-------------HHHHHHHHhhhhh
Confidence 34445678899999964 44444444333333332221 2267777776554
No 31
>PF08426 ICE2: ICE2; InterPro: IPR013635 ICE2 is a fungal ER protein which has been shown to play an important role in forming/maintaining the cortical ER []. It has also been identified as a protein which is necessary for nuclear inner membrane targeting [].
Probab=25.24 E-value=1.6e+02 Score=29.08 Aligned_cols=52 Identities=15% Similarity=0.356 Sum_probs=34.0
Q ss_pred hhhhhhHHHHHHHHHhhchhHHHHHHHh--hhheecccCcccchHHHHHHHHHHHH
Q 027413 91 KRSERQTYLVAAIVSSLGISSMAVLAIH--HRFSWQTEGCELQLLEMFGTFALSVG 144 (223)
Q Consensus 91 k~~er~ty~~aa~~ss~gi~~~a~~a~y--~rf~~~~~~g~~p~~eM~~t~ll~lg 144 (223)
+||| +|++...+.|=+|.+.++.-.| |-|-|+.+-.+-.+.-...|..++++
T Consensus 145 ~rSd--~W~I~~Li~Sg~vit~s~YfLyRIy~fp~~is~~~AtLiG~~lT~~~~L~ 198 (412)
T PF08426_consen 145 GRSD--SWMIVSLIASGSVITASLYFLYRIYVFPWTISNLDATLIGVTLTSVVFLG 198 (412)
T ss_pred CCCc--hhHHHHHHHHHHHHHHHHHHHHHhhccccccCcccHHHHHHHHHHHHHHH
Confidence 3666 9999999999999888876665 66677665444333333344444443
No 32
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=24.85 E-value=99 Score=26.47 Aligned_cols=93 Identities=24% Similarity=0.175 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhchhH------HHHHHHhhhheecccCcccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhh
Q 027413 97 TYLVAAIVSSLGISS------MAVLAIHHRFSWQTEGCELQLLEMFGTFALSVGA--AVGMEFWARWAHRALWHASLWHM 168 (223)
Q Consensus 97 ty~~aa~~ss~gi~~------~a~~a~y~rf~~~~~~g~~p~~eM~~t~ll~lga--fvgMEf~Aw~aHKylMHG~LW~l 168 (223)
+-.+.+|+|++|-.+ --..|+=.-|.=|-|| .+.+.+|=+.+ ++......|+.||.
T Consensus 11 ~G~lGsvVsamgCA~CFPAlASLGAAIGLGFLsq~EG-------LFi~~LlPlFA~iALlanalgW~sHRQ--------- 74 (139)
T PRK13755 11 TGALGSVVSAMGCAACFPALASLGAAIGLGFLSQYEG-------LFISTLLPLFAAIALLANALGWFSHRQ--------- 74 (139)
T ss_pred cccHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 456777888777432 1123555666666655 34444443333 33445555666655
Q ss_pred hccCCCCCCCCCccchhhhhhhHHHHHHHH-HhhhccCCCcchhhhhhhcccc
Q 027413 169 HKSHHKPRDGPFELNDIFAVINAVPAIALL-SYGFFHKGIVPGLCFGAVLASS 220 (223)
Q Consensus 169 HksHH~p~~G~FE~NDlFaiifAvpAIaL~-~~Gf~~~gl~~~lcfgaGlGIT 220 (223)
+|+.--| -..|+++|. .|+++ .++|-...+..||.+.
T Consensus 75 ---W~Rs~lG-----------~iGP~lvl~~~~~~~-~~~ws~~l~Y~gLalM 112 (139)
T PRK13755 75 ---WLRSALG-----------MIGPALVLAAVFLLL-GNGWSANLLYVGLALM 112 (139)
T ss_pred ---HHHHhhc-----------chhHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence 3333222 346776666 34443 3556666677777654
No 33
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.99 E-value=1.2e+02 Score=21.18 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=20.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 129 ELQLLEMFGTFALSVGAAVGMEFWARWA 156 (223)
Q Consensus 129 ~~p~~eM~~t~ll~lgafvgMEf~Aw~a 156 (223)
.+|++|--.+-+++..-.++.-.|+||=
T Consensus 4 plpi~e~~i~~~~s~v~t~~~~l~awwK 31 (47)
T PF04688_consen 4 PLPIDEEQINQLISAVFTIVTALYAWWK 31 (47)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789998665566666777788899884
No 34
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=23.76 E-value=2.2e+02 Score=26.86 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=47.7
Q ss_pred HHHHHHhhhh-eecccCc-cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCccchhhh
Q 027413 112 MAVLAIHHRF-SWQTEGC-EL-QLLEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHKSHHKPRDGPFELNDIFA 187 (223)
Q Consensus 112 ~a~~a~y~rf-~~~~~~g-~~-p~~eM~~t~ll~lgafvgMEf~Aw~aHKylMHG~LW~lHksHH~p~~G~FE~NDlFa 187 (223)
.-+...|+.. .|.+..+ ++ ++.||+.-+++. ++.=|++=.|+||-.=|+++...+..+|+.-..||-.--.+|
T Consensus 94 p~~~~~y~~~~~~~~~~~~plPt~~~~l~~l~i~---~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf~~sa~Ya 169 (283)
T KOG0873|consen 94 PLTLVSYPFVEWFGLPSGAPLPSWKEMLAQLVVF---FLIEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPFGLSAEYA 169 (283)
T ss_pred hHHHHhHHHHHHhCCCcCCCCCcHHHHHHHHHHH---HHHHHHHHHHHHHHhcchHHHHHHHhhhhcccCchhHhhhhc
Confidence 3445566666 3445433 32 478888777665 356689999999999999988776666666666665444333
No 35
>PF03334 PhaG_MnhG_YufB: Na+/H+ antiporter subunit; InterPro: IPR005133 This is a family of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti (Sinorhizobium meliloti), show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons. ; GO: 0005451 monovalent cation:hydrogen antiporter activity, 0015672 monovalent inorganic cation transport, 0015992 proton transport
Probab=23.37 E-value=2.7e+02 Score=20.92 Aligned_cols=55 Identities=18% Similarity=0.000 Sum_probs=37.4
Q ss_pred HHHHHHHhhchhHHHHHHHhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 99 LVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFWARWAHR 158 (223)
Q Consensus 99 ~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~aHK 158 (223)
-.++..+++|...+.+.+.-|-. ....-+-..+..+.+.+.+=++.-..||.+||
T Consensus 27 Ha~s~~~tlG~~lilig~~l~~~-----~~~~~~k~lli~~~~~lt~Pv~sh~iaraa~~ 81 (81)
T PF03334_consen 27 HAASKADTLGAILILIGLALYFG-----SSWVSLKLLLIILFLLLTNPVASHAIARAAYR 81 (81)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678889999888666554431 12333444477777778888888888888775
No 36
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=23.30 E-value=3.3e+02 Score=21.14 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=12.8
Q ss_pred cccCcccchHHHHHHHHHH
Q 027413 124 QTEGCELQLLEMFGTFALS 142 (223)
Q Consensus 124 ~~~~g~~p~~eM~~t~ll~ 142 (223)
+...|+....+++..+.++
T Consensus 250 ~~~~g~~s~g~~~~~~~~~ 268 (275)
T PF00664_consen 250 SVINGQISIGTLVAFLSLS 268 (275)
T ss_dssp -HCTTSSHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHH
Confidence 4678999988886544443
No 37
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.99 E-value=1.9e+02 Score=22.76 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=30.2
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhheecccCcc-cchHHH-----HHHHHHHHHHHH
Q 027413 98 YLVAAIVSSLGISSMAVLAIHHRFSWQTEGCE-LQLLEM-----FGTFALSVGAAV 147 (223)
Q Consensus 98 y~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~-~p~~eM-----~~t~ll~lgafv 147 (223)
=-++.+|-.+-++.++-..|||=+ +|+ .|+.+. +..|.+.+.+|+
T Consensus 31 ~W~~p~m~~lmllGL~WiVvyYi~-----~~~i~pi~~lG~WN~~IGfg~~~~Gf~ 81 (87)
T PF06781_consen 31 RWYAPLMLGLMLLGLLWIVVYYIS-----GGQIPPIPDLGNWNLAIGFGLMIVGFL 81 (87)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhcc-----cCCCCCcccccchHHHHHHHHHHHHHH
Confidence 346778888999999999999944 555 566655 444444444443
No 38
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=22.89 E-value=95 Score=29.08 Aligned_cols=32 Identities=28% Similarity=0.586 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhhh-hhccCCC
Q 027413 142 SVGAAVGMEFWARWAHRALWHA--SLWH-MHKSHHK 174 (223)
Q Consensus 142 ~lgafvgMEf~Aw~aHKylMHG--~LW~-lHksHH~ 174 (223)
++.+++...-|-++.||| ||= +|.. +|..||+
T Consensus 126 ~f~aflviDtWQYF~HRy-mH~NK~LYk~iHs~HHr 160 (287)
T KOG0874|consen 126 FFAAFLVIDTWQYFLHRY-MHMNKFLYKHIHSQHHR 160 (287)
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHhhcee
Confidence 466888899999999999 554 6765 4666664
No 39
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=21.81 E-value=1.8e+02 Score=23.09 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=29.5
Q ss_pred HHHHHHHhhchhHHHHHHHhhhheecccCcccch-HHH-----HHHHHHHHHHHH
Q 027413 99 LVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQL-LEM-----FGTFALSVGAAV 147 (223)
Q Consensus 99 ~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~-~eM-----~~t~ll~lgafv 147 (223)
-++.+|-.+=++.++-+.|||= .+|++|+ .+. +..|.+.+.+|+
T Consensus 32 W~~~~m~glm~~GllWlvvyYl-----~~~~~P~m~~lG~WN~~IGFg~~i~G~l 81 (87)
T PRK00159 32 WYVVLMLGLMLIGLAWLVVNYL-----AGPAIPWMADLGPWNYAIGFALMITGLL 81 (87)
T ss_pred cHHHHHHHHHHHHHHHHHHHhh-----ccCCCCCCcccCchhHHHHHHHHHHHHH
Confidence 4567777888888999999995 4578884 444 444555444443
No 40
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.66 E-value=4.5e+02 Score=29.00 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhchhHHHHHHHhh--h-heec----ccCcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 97 TYLVAAIVSSLGISSMAVLAIHH--R-FSWQ----TEGCE----LQLLEMFGTFALSVGAAVGMEFWARWAHRAL 160 (223)
Q Consensus 97 ty~~aa~~ss~gi~~~a~~a~y~--r-f~~~----~~~g~----~p~~eM~~t~ll~lgafvgMEf~Aw~aHKyl 160 (223)
.-.++++++-..|-|=.+.|.+| . =.|+ .+|++ +.+...+..+++++.+++..-....+..|++
T Consensus 787 ~l~l~~l~~l~~iWsd~~~a~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~l 861 (1109)
T PRK10929 787 ILTLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELAL 861 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777766 2 2577 34554 3455555666666666666666665665544
No 41
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=21.48 E-value=1.8e+02 Score=21.26 Aligned_cols=14 Identities=29% Similarity=0.126 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhh
Q 027413 151 FWARWAHRALWHASL 165 (223)
Q Consensus 151 f~Aw~aHKylMHG~L 165 (223)
....+.|.+ +|+.+
T Consensus 14 ~~~~~~H~~-~H~~~ 27 (122)
T cd01060 14 GLTVLAHEL-GHRSF 27 (122)
T ss_pred HHHHHHHHH-hhhhh
Confidence 556677777 77754
No 42
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=21.20 E-value=65 Score=29.35 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=27.4
Q ss_pred ccchhhhhhhHHHHHHHHHhhhccCCCcchhhhh----------hhccccc
Q 027413 181 ELNDIFAVINAVPAIALLSYGFFHKGIVPGLCFG----------AVLASSF 221 (223)
Q Consensus 181 E~NDlFaiifAvpAIaL~~~Gf~~~gl~~~lcfg----------aGlGITl 221 (223)
==||.-++.|..+|+.+=++||.- .+|+. +||||||
T Consensus 84 vG~~~~F~~n~~vs~~Fq~iGFll-----ty~l~tthAar~Gs~aGlGltl 129 (233)
T PF10176_consen 84 VGNDFSFVWNFLVSFSFQWIGFLL-----TYCLHTTHAARYGSRAGLGLTL 129 (233)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH-----HHHHhcchHhhccchhhchHHH
Confidence 358999999999999988999731 33333 7999887
No 43
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=20.70 E-value=2.1e+02 Score=24.76 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=25.1
Q ss_pred HHHhhhheecccCcccchHHHHHHHHHHHHHHH
Q 027413 115 LAIHHRFSWQTEGCELQLLEMFGTFALSVGAAV 147 (223)
Q Consensus 115 ~a~y~rf~~~~~~g~~p~~eM~~t~ll~lgafv 147 (223)
..+++|--=++..|++|-.||+-...+++++++
T Consensus 52 ~~~l~~~q~~~~~G~~P~~~ll~g~~~~vagiL 84 (158)
T COG3030 52 FGTLLRAQAALASGEVPGAELLDGLLLIIAGIL 84 (158)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHhHHHHHHHHH
Confidence 456777766777889999999777777766665
Done!