Query 027413
Match_columns 223
No_of_seqs 137 out of 196
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 15:54:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 77.0 0.62 2.1E-05 39.3 0.6 103 84-201 51-167 (283)
2 3j1z_P YIIP, cation efflux fam 40.9 36 0.0012 29.1 5.0 107 84-201 60-176 (306)
3 3llq_A Aquaporin Z 2; aquapori 25.5 26 0.00088 30.3 1.5 18 169-186 12-30 (256)
4 2kdr_X NS4B, P27, non-structur 13.1 92 0.0032 19.3 1.6 15 99-113 6-20 (28)
5 3rt3_C NS1, NS1B, non-structur 12.8 57 0.002 25.3 0.7 13 113-125 26-38 (109)
6 3ixz_A Potassium-transporting 11.5 4.5E+02 0.015 26.3 6.8 60 96-158 962-1022(1034)
7 1q90_R Cytochrome B6-F complex 10.0 2.9E+02 0.01 18.6 3.4 30 94-123 10-39 (49)
8 1q16_C Cytochrome B-NR, respir 9.0 2.4E+02 0.0081 22.8 3.2 25 93-117 122-146 (225)
9 2oe3_A Thioredoxin-3; electron 8.6 82 0.0028 21.9 0.2 17 169-185 4-20 (114)
10 2lly_A Neuronal acetylcholine 8.1 7.2E+02 0.025 19.0 6.9 47 107-153 41-90 (137)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=76.99 E-value=0.62 Score=39.33 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=56.2
Q ss_pred HHHHHHhhh-hhhhHH------HHHHHHHhhchhHHHHHHHhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 84 AEERQARKR-SERQTY------LVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFWARWA 156 (223)
Q Consensus 84 ~~~~~~rk~-~er~ty------~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~a 156 (223)
++-|+++|+ .+|.+| -+++...++.+..+++..+|-=+..-+++.+++...+ .+.+.+.+.+..++.+|+.
T Consensus 51 ~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~~~~~~~~~~--~l~v~~~s~~v~~~~~~~~ 128 (283)
T 3h90_A 51 LVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGV--GVIVTIVALICTIILVSFQ 128 (283)
T ss_dssp HHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCCCCC--CTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchH--HHHHHHHHHHHHHHHHHHH
Confidence 677888777 344433 3566666676776666665533322234444433221 2334455667778888887
Q ss_pred HHH-------HHHhhhhhhhccCCCCCCCCCccchhhhhhhHHHHHHHHHhh
Q 027413 157 HRA-------LWHASLWHMHKSHHKPRDGPFELNDIFAVINAVPAIALLSYG 201 (223)
Q Consensus 157 HKy-------lMHG~LW~lHksHH~p~~G~FE~NDlFaiifAvpAIaL~~~G 201 (223)
+|. .+.+-.|+ -++|.+.-+-.+.++++..+|
T Consensus 129 ~~~~~~~~s~~l~a~~~h-------------~~~D~~~s~~vli~~~~~~~g 167 (283)
T 3h90_A 129 RWVVRRTQSQAVRADMLH-------------YQSDVMMNGAILLALGLSWYG 167 (283)
T ss_dssp HHHHHHSCCHHHHHHHHH-------------HHHHHCCCSCSCSSSCSCSTT
T ss_pred HHHHHHcCCHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhC
Confidence 774 12222222 157887766655554443444
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=40.89 E-value=36 Score=29.10 Aligned_cols=107 Identities=21% Similarity=0.133 Sum_probs=57.2
Q ss_pred HHHHHHhhhh-hhhHH------HHHHHHHhhchhHHHHHHHhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 84 AEERQARKRS-ERQTY------LVAAIVSSLGISSMAVLAIHHRFSWQTEGCELQLLEMFGTFALSVGAAVGMEFWARWA 156 (223)
Q Consensus 84 ~~~~~~rk~~-er~ty------~~aa~~ss~gi~~~a~~a~y~rf~~~~~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~a 156 (223)
++-|.++|+. ++.+| .++++..++.+..+++..+|.=...-+++.++.-..+ .+.+.+++++.++...++.
T Consensus 60 ~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~l~~~~~~i~~eai~~l~~p~~~~~~~~--~~~v~~~~~~~~~~~~~~~ 137 (306)
T 3j1z_P 60 IAIRYAIVPADHDHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATL--GVVVSVVAIVLTLALVLLQ 137 (306)
T ss_dssp HHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCGGGTTC--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCcccccc--chhhhhhHhhhhHHHHHHH
Confidence 6778887763 33332 3466667777777777766654444445554433333 2334555667777777666
Q ss_pred HHHHHHhhhhhhhccCCCCC-CC--CCccchhhhhhhHHHHHHHHHhh
Q 027413 157 HRALWHASLWHMHKSHHKPR-DG--PFELNDIFAVINAVPAIALLSYG 201 (223)
Q Consensus 157 HKylMHG~LW~lHksHH~p~-~G--~FE~NDlFaiifAvpAIaL~~~G 201 (223)
++.- +.++.+. .+ .--+||++.=+.++.++++..+|
T Consensus 138 ~~~~---------~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~~g 176 (306)
T 3j1z_P 138 KRAL---------AATNSTVVEADSLHYKSDLFLNAAVLLALVLSQYG 176 (306)
T ss_dssp HHHH---------TTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCCSS
T ss_pred HHhc---------cccCCHHHHHHHHhhcchhhhhhHHHHHHHHHHhC
Confidence 5431 1111000 00 11257887766666665555555
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=25.54 E-value=26 Score=30.34 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=1.3
Q ss_pred hccCCCCCCC-CCccchhh
Q 027413 169 HKSHHKPRDG-PFELNDIF 186 (223)
Q Consensus 169 HksHH~p~~G-~FE~NDlF 186 (223)
|..||++||. -|.+|.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~ 30 (256)
T 3llq_A 12 HHHHHHHHENLYFQSYVMG 30 (256)
T ss_dssp -----------------CH
T ss_pred cccccccchhhhhhHHHHH
Confidence 3334445555 78888875
No 4
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=13.07 E-value=92 Score=19.34 Aligned_cols=15 Identities=40% Similarity=0.527 Sum_probs=12.4
Q ss_pred HHHHHHHhhchhHHH
Q 027413 99 LVAAIVSSLGISSMA 113 (223)
Q Consensus 99 ~~aa~~ss~gi~~~a 113 (223)
.|.|++||+-|||+-
T Consensus 6 ~VtaiLssLTvTsLl 20 (28)
T 2kdr_X 6 RVTAILSSLTVTQLL 20 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367899999999874
No 5
>3rt3_C NS1, NS1B, non-structural protein 1; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Influenza b virus} PDB: 1xeq_A 3sdl_A 3r66_A
Probab=12.79 E-value=57 Score=25.30 Aligned_cols=13 Identities=46% Similarity=0.905 Sum_probs=10.8
Q ss_pred HHHHHhhhheecc
Q 027413 113 AVLAIHHRFSWQT 125 (223)
Q Consensus 113 a~~a~y~rf~~~~ 125 (223)
.++-.|-||+||-
T Consensus 26 gil~cy~r~swq~ 38 (109)
T 3rt3_C 26 GILECYERFSWQR 38 (109)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHhhhcc
Confidence 4567899999995
No 6
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=11.50 E-value=4.5e+02 Score=26.33 Aligned_cols=60 Identities=13% Similarity=-0.097 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhhchhHHHHHHHhhhheec-ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 96 QTYLVAAIVSSLGISSMAVLAIHHRFSWQ-TEGCELQLLEMFGTFALSVGAAVGMEFWARWAHR 158 (223)
Q Consensus 96 ~ty~~aa~~ss~gi~~~a~~a~y~rf~~~-~~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~aHK 158 (223)
--|++.|+..++.+..+ .+|.=+.-. +.-..+++.+-+..+++.+..++..|..-|+..|
T Consensus 962 N~~l~~~~~~~~~l~~~---~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~ 1022 (1034)
T 3ixz_A 962 NRILVIAIVFQVCIGCF---LCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRC 1022 (1034)
T ss_pred cHHHHHHHHHHHHHHHH---HHHhhhHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888777765543 344432111 1234577777787788888888899998776554
No 7
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=9.99 E-value=2.9e+02 Score=18.55 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHhhchhHHHHHHHhhhhee
Q 027413 94 ERQTYLVAAIVSSLGISSMAVLAIHHRFSW 123 (223)
Q Consensus 94 er~ty~~aa~~ss~gi~~~a~~a~y~rf~~ 123 (223)
+|+.++-...+.+.+.++.+...-|.||.-
T Consensus 10 ~RRqfln~l~~G~~a~~a~~~~~P~v~ffv 39 (49)
T 1q90_R 10 NKRNIMNLILAGGAGLPITTLALGYGAFFV 39 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheeec
Confidence 344555555556667777777777777753
No 8
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=9.02 E-value=2.4e+02 Score=22.81 Aligned_cols=25 Identities=4% Similarity=0.108 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHhhchhHHHHHHH
Q 027413 93 SERQTYLVAAIVSSLGISSMAVLAI 117 (223)
Q Consensus 93 ~er~ty~~aa~~ss~gi~~~a~~a~ 117 (223)
|-...|++-.+.-.+++|.+..-+.
T Consensus 122 s~~~d~~il~ll~~i~~tGl~~~~~ 146 (225)
T 1q16_C 122 TTGADILILSLLVIQCALGLLTIPF 146 (225)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777655443
No 9
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=8.59 E-value=82 Score=21.92 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=8.1
Q ss_pred hccCCCCCCCCCccchh
Q 027413 169 HKSHHKPRDGPFELNDI 185 (223)
Q Consensus 169 HksHH~p~~G~FE~NDl 185 (223)
|.+||.|+....+.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (114)
T 2oe3_A 4 HHHHHSSYTSITKLTNL 20 (114)
T ss_dssp -----CCGGGSCBCCSH
T ss_pred ccccccchhheeecCCH
Confidence 55666777777676663
No 10
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=8.07 E-value=7.2e+02 Score=19.01 Aligned_cols=47 Identities=11% Similarity=-0.060 Sum_probs=28.5
Q ss_pred hchhHHHHHHHhhh-heecccC-c-ccchHHHHHHHHHHHHHHHHHHHHH
Q 027413 107 LGISSMAVLAIHHR-FSWQTEG-C-ELQLLEMFGTFALSVGAAVGMEFWA 153 (223)
Q Consensus 107 ~gi~~~a~~a~y~r-f~~~~~~-g-~~p~~eM~~t~ll~lgafvgMEf~A 153 (223)
+|||.+-.+.++.- ..+++.. + .+|.-+....+.+.+.++...|...
T Consensus 41 lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~v~~sl~~tv~ 90 (137)
T 2lly_A 41 LCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIFVTLSIVITVF 90 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHHHHhhhhhh
Confidence 55665555555433 3466753 4 7999988666666655555556554
Done!