Query 027413
Match_columns 223
No_of_seqs 137 out of 196
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 15:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027413.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027413hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bnma1 a.35.1.3 (A:6-76) Hydr 48.2 7.1 0.00052 26.8 3.2 57 84-148 6-63 (71)
2 d1pv7a_ f.38.1.2 (A:) Lactose 33.3 77 0.0056 22.5 9.4 23 137-159 264-286 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 20.1 1.6E+02 0.012 21.7 7.2 33 127-159 279-312 (447)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 20.0 49 0.0036 27.6 4.4 61 96-159 408-469 (472)
5 d1vlaa_ d.227.1.2 (A:) Hypothe 15.1 45 0.0033 23.0 2.5 20 97-116 46-65 (144)
6 d1xeqa1 a.16.1.1 (A:15-103) N- 14.2 23 0.0017 25.0 0.7 13 113-125 12-24 (89)
7 d1uspa_ d.227.1.1 (A:) Organic 14.0 51 0.0037 22.4 2.5 20 97-116 46-65 (137)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 12.7 1.9E+02 0.014 19.2 8.2 74 122-202 9-88 (100)
9 d2onfa1 d.227.1.1 (A:1-139) Hy 12.6 59 0.0043 22.3 2.5 20 97-116 44-63 (139)
10 d1y7ua1 d.38.1.1 (A:8-171) Acy 10.8 48 0.0035 24.3 1.6 6 54-59 112-117 (164)
No 1
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=48.21 E-value=7.1 Score=26.75 Aligned_cols=57 Identities=35% Similarity=0.519 Sum_probs=40.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhchhHHHHHHHhhhheecc-cCcccchHHHHHHHHHHHHHHHH
Q 027413 84 AEERQARKRSERQTYLVAAIVSSLGISSMAVLAIHHRFSWQT-EGCELQLLEMFGTFALSVGAAVG 148 (223)
Q Consensus 84 ~~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~~-~~g~~p~~eM~~t~ll~lgafvg 148 (223)
.+|++..+| |+-..--||.+|-+|-|-=.+.| |.- ||||+.+++. +-++=++|+-+|
T Consensus 6 fae~lk~rr-eqvkmdhaalas~lgetpetvaa------wengeggeltltql-g~ia~~lgtsig 63 (71)
T d2bnma1 6 FAELLKDRR-EQVKMDHAALASLLGETPETVAA------WENGEGGELTLTQL-GRIAHVLGTSIG 63 (71)
T ss_dssp HHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHH------HHTTTCTTCBHHHH-HHHHHHTTSCTG
T ss_pred HHHHHHHHH-HHHhhhHHHHHHHHcCCchHHHH------hhcCCCceeeHHHH-HHHHHHHccccc
Confidence 567765544 66666679999999999877765 765 8999998874 455555555443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=33.35 E-value=77 Score=22.54 Aligned_cols=23 Identities=22% Similarity=-0.135 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027413 137 GTFALSVGAAVGMEFWARWAHRA 159 (223)
Q Consensus 137 ~t~ll~lgafvgMEf~Aw~aHKy 159 (223)
......++..++.=...|+..|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~r~ 286 (417)
T d1pv7a_ 264 VTTMGELLNASIMFFAPLIINRI 286 (417)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccccccccccchhhhhhhhccc
Confidence 33444455566666666666654
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=20.12 E-value=1.6e+02 Score=21.70 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=17.6
Q ss_pred CcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 127 GCELQLLEM-FGTFALSVGAAVGMEFWARWAHRA 159 (223)
Q Consensus 127 ~g~~p~~eM-~~t~ll~lgafvgMEf~Aw~aHKy 159 (223)
....+..+. ....+..++..++.=...|+.-|.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhhcchhhhhhhhhhhhhhhhhc
Confidence 344455555 344444555666666666665543
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=19.99 E-value=49 Score=27.57 Aligned_cols=61 Identities=15% Similarity=0.025 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhhchhHHHHHHHhhhheec-ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027413 96 QTYLVAAIVSSLGISSMAVLAIHHRFSWQ-TEGCELQLLEMFGTFALSVGAAVGMEFWARWAHRA 159 (223)
Q Consensus 96 ~ty~~aa~~ss~gi~~~a~~a~y~rf~~~-~~~g~~p~~eM~~t~ll~lgafvgMEf~Aw~aHKy 159 (223)
..|++.++..++. +.+..+|.-+.=. +.--.+|+.+-+..+.+.+..++.+|.+-|+..||
T Consensus 408 N~~l~~av~i~~~---l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~~~~~~~~~El~K~~~R~~ 469 (472)
T d1wpga4 408 NIWLLGSICLSMS---LHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNY 469 (472)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHSTTTHHHHTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHH---HHHHHHHhhHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3566666654444 4555677654311 22346888888888889999999999998776654
No 5
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=15.13 E-value=45 Score=22.99 Aligned_cols=20 Identities=10% Similarity=0.434 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhchhHHHHHH
Q 027413 97 TYLVAAIVSSLGISSMAVLA 116 (223)
Q Consensus 97 ty~~aa~~ss~gi~~~a~~a 116 (223)
-|+.+|++||++++..+++.
T Consensus 46 elllaala~C~~~~~~~~a~ 65 (144)
T d1vlaa_ 46 ELVLTGLMGCTGMDVVSILR 65 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 58999999999988777765
No 6
>d1xeqa1 a.16.1.1 (A:15-103) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza B virus [TaxId: 11520]}
Probab=14.21 E-value=23 Score=24.96 Aligned_cols=13 Identities=46% Similarity=0.905 Sum_probs=10.9
Q ss_pred HHHHHhhhheecc
Q 027413 113 AVLAIHHRFSWQT 125 (223)
Q Consensus 113 a~~a~y~rf~~~~ 125 (223)
.++-.|-||+||-
T Consensus 12 gil~cy~r~swq~ 24 (89)
T d1xeqa1 12 GILECYERFSWQR 24 (89)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHhhhcc
Confidence 4677899999995
No 7
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=13.96 E-value=51 Score=22.42 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhchhHHHHHH
Q 027413 97 TYLVAAIVSSLGISSMAVLA 116 (223)
Q Consensus 97 ty~~aa~~ss~gi~~~a~~a 116 (223)
-|+.||+.||++++...++.
T Consensus 46 elllaAlasC~~~t~~~~a~ 65 (137)
T d1uspa_ 46 QLFAAGYAACFQGALGVVSR 65 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999877665543
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.74 E-value=1.9e+02 Score=19.19 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=38.0
Q ss_pred eecc--cCcccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCccchhhh-hhhHHHHH
Q 027413 122 SWQT--EGCELQLLEM---FGTFALSVGAAVGMEFWARWAHRALWHASLWHMHKSHHKPRDGPFELNDIFA-VINAVPAI 195 (223)
Q Consensus 122 ~~~~--~~g~~p~~eM---~~t~ll~lgafvgMEf~Aw~aHKylMHG~LW~lHksHH~p~~G~FE~NDlFa-iifAvpAI 195 (223)
.||+ +.+.=|..|. +-...+.+.++++. ++- +++--+.|..+++-++ ....+.-|...= +--.+|++
T Consensus 9 ~~ql~fqd~as~~a~~i~~l~~~v~~i~~~I~~-~V~-----~~l~~~~~~~r~~~~~-~~~~~~~n~~LEiiWTviP~l 81 (100)
T d3dtub2 9 PGGTGFQPSASPVATQIHWLDGFILVIIAAITI-FVT-----LLILYAVWRFHEKRNK-VPARFTHNSPLEIAWTIVPIV 81 (100)
T ss_dssp TTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHBTTTCC-SCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHHHHHhhhhhccCCC-CCccccCcchHHHHHHHHHHH
Confidence 4777 3555666555 33344444444332 222 3344445555544332 122344555443 44568888
Q ss_pred HHHHhhh
Q 027413 196 ALLSYGF 202 (223)
Q Consensus 196 aL~~~Gf 202 (223)
.|+++++
T Consensus 82 ILi~l~~ 88 (100)
T d3dtub2 82 ILVAIGA 88 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888886
No 9
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=12.62 E-value=59 Score=22.28 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhchhHHHHHH
Q 027413 97 TYLVAAIVSSLGISSMAVLA 116 (223)
Q Consensus 97 ty~~aa~~ss~gi~~~a~~a 116 (223)
-|+.||++||++++...++.
T Consensus 44 elllaala~C~~~~~~~~a~ 63 (139)
T d2onfa1 44 TLFPSVLASCLLTTFLEFKD 63 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988776654
No 10
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=10.85 E-value=48 Score=24.27 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.7
Q ss_pred EEeecC
Q 027413 54 FVTEDK 59 (223)
Q Consensus 54 fv~e~~ 59 (223)
||.-|+
T Consensus 112 fVavd~ 117 (164)
T d1y7ua1 112 FVALSK 117 (164)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 444444
Done!