Query 027414
Match_columns 223
No_of_seqs 264 out of 1560
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cx6_A Hypothetical protein YH 13.3 1E+02 0.0035 21.7 2.2 25 62-86 20-44 (90)
2 2za4_B Barstar; protein-protei 11.4 1.3E+02 0.0043 21.0 2.1 25 62-86 20-44 (90)
3 2l2o_A UPF0727 protein C6ORF11 7.5 1.6E+02 0.0053 21.3 1.3 32 46-77 30-66 (89)
4 1ty4_C Egg laying defective EG 5.4 1.8E+02 0.0062 19.0 0.6 27 52-78 28-57 (57)
5 2wdq_C Succinate dehydrogenase 4.2 3.5E+02 0.012 19.9 1.6 25 1-25 2-27 (129)
6 2l76_A Nfatc2-interacting prot 3.7 3.7E+02 0.013 19.4 1.2 20 66-85 36-55 (95)
7 2krh_A Actin-binding RHO-activ 3.2 4.1E+02 0.014 18.9 1.1 30 48-77 40-71 (85)
8 2jtw_A Transmembrane helix 7 o 3.1 8.1E+02 0.028 13.5 2.2 13 20-32 2-14 (26)
9 1szi_A TIP47, mannose-6-phosph 2.9 2.4E+02 0.0082 23.9 -0.5 32 54-85 192-223 (247)
10 2bnl_A Modulator protein RSBR; 2.8 5.7E+02 0.02 19.6 1.6 32 57-89 48-79 (136)
No 1
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=13.27 E-value=1e+02 Score=21.70 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=21.8
Q ss_pred HHHhhCCCCCchhhhhhhhhHHHHH
Q 027414 62 WCARKFNQVSTFGAVLDMVTDRIST 86 (223)
Q Consensus 62 ~iAR~~~q~S~fGa~LD~vaDr~~~ 86 (223)
.+|++++-..-||+-||.+.|-++.
T Consensus 20 ~~~~~~~~p~~fG~NlDAL~D~Lt~ 44 (90)
T 2cx6_A 20 DFSQTFGLAKDKVRDLDSLWDVLMN 44 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHHT
T ss_pred HHHHHhCCchhhCCCHHHHHHHHcc
Confidence 5789999999999999999997653
No 2
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=11.36 E-value=1.3e+02 Score=21.00 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.1
Q ss_pred HHHhhCCCCCchhhhhhhhhHHHHH
Q 027414 62 WCARKFNQVSTFGAVLDMVTDRIST 86 (223)
Q Consensus 62 ~iAR~~~q~S~fGa~LD~vaDr~~~ 86 (223)
.++|.++-..-||.-+|.+.|-+..
T Consensus 20 ~l~~~l~~P~~fG~NlDAL~D~L~~ 44 (90)
T 2za4_B 20 TLKKELALPEYYGENLDALWAALTG 44 (90)
T ss_dssp HHHHHTTCCTTCCCSHHHHHHHHHH
T ss_pred HHHHHhCCCcccCCCHHHHHHHhcC
Confidence 5789999999999999999997765
No 3
>2l2o_A UPF0727 protein C6ORF115; HSPC280, winged helix, unknown function; NMR {Homo sapiens}
Probab=7.48 E-value=1.6e+02 Score=21.30 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=24.2
Q ss_pred HHHHH---HHHHhhcchhHHH--HhhCCCCCchhhhh
Q 027414 46 FSVLY---FISFVCDAIDGWC--ARKFNQVSTFGAVL 77 (223)
Q Consensus 46 ~~~l~---~ls~l~D~lDG~i--AR~~~q~S~fGa~L 77 (223)
+..+| ..+-++|++-|++ |||.+..+--|..|
T Consensus 30 FG~LF~dd~~~ni~e~LVGtL~~ArK~k~V~FeGEmL 66 (89)
T 2l2o_A 30 FGVLFRDDKSANLFEALVGTLKAAKRRKIVTYPGELL 66 (89)
T ss_dssp HHHHHHHHHHHCCCTTHHHHHHHHHHTTSEECSCSCC
T ss_pred eeeeecchHHhhHHHHHHHHHHHHHhcCceeeccceE
Confidence 55666 7888999999986 77777777666654
No 4
>1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans}
Probab=5.44 E-value=1.8e+02 Score=19.04 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=10.6
Q ss_pred HHHhhcchhHHHH---hhCCCCCchhhhhh
Q 027414 52 ISFVCDAIDGWCA---RKFNQVSTFGAVLD 78 (223)
Q Consensus 52 ls~l~D~lDG~iA---R~~~q~S~fGa~LD 78 (223)
++..+|-+|-.+- |+--..|-+|+++|
T Consensus 28 L~~MCDdFDaeMMSys~~~tsrSLl~r~~d 57 (57)
T 1ty4_C 28 LAAMCDDFDAQMMSYSAHASDRSLFHRLLD 57 (57)
T ss_dssp HHHHHHHHHHHHGGGSCCC-----------
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHhcC
Confidence 4667888888763 33333456677665
No 5
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=4.18 E-value=3.5e+02 Score=19.92 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=11.0
Q ss_pred CCCccccCcccccccccc-chhhHHH
Q 027414 1 MANVKKTAPRLRKLSVYL-YIPNIIG 25 (223)
Q Consensus 1 m~~~~~~~p~~~~~~~~~-~iPN~IT 25 (223)
++|.++++|...+..++. ..++..+
T Consensus 2 ~~~~~~~RP~sphl~iyr~~~t~~~s 27 (129)
T 2wdq_C 2 IRNVKKQRPVNLDLQTIRFPITAIAS 27 (129)
T ss_dssp ------CCCBCCCGGGSCCCHHHHHH
T ss_pred CccccccCCCCCCcCccCCcHHHHHH
Confidence 367888888876666554 3334343
No 6
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=3.69 E-value=3.7e+02 Score=19.43 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=16.4
Q ss_pred hCCCCCchhhhhhhhhHHHH
Q 027414 66 KFNQVSTFGAVLDMVTDRIS 85 (223)
Q Consensus 66 ~~~q~S~fGa~LD~vaDr~~ 85 (223)
+.+..|+|.++.|..|+|..
T Consensus 36 kIK~tt~l~KL~~aYc~r~g 55 (95)
T 2l76_A 36 PLRMSEPLQSVVDHMATHLG 55 (95)
T ss_dssp EECSSSCTHHHHHHHHHHHT
T ss_pred EEecCChHHHHHHHHHhhcC
Confidence 34678999999999999865
No 7
>2krh_A Actin-binding RHO-activating protein; muscle, stress response, cardiac, actin-bindi cytoskeleton, actin-binding protein; NMR {Rattus norvegicus}
Probab=3.21 E-value=4.1e+02 Score=18.86 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=21.6
Q ss_pred HHHHHHHhhcchhHHH--HhhCCCCCchhhhh
Q 027414 48 VLYFISFVCDAIDGWC--ARKFNQVSTFGAVL 77 (223)
Q Consensus 48 ~l~~ls~l~D~lDG~i--AR~~~q~S~fGa~L 77 (223)
++-..+-++|++-|++ |||.+..+--|..|
T Consensus 40 LFd~~~~i~e~lvGtL~~ArK~~~V~FeGEmL 71 (85)
T 2krh_A 40 LFDRYVRISDKVVGILMRARKHGLVHFEGEML 71 (85)
T ss_dssp HHHHHTTTTSCHHHHHHHHHTTSCBCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceeecCcee
Confidence 3445567899999986 77777777666654
No 8
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=3.07 E-value=8.1e+02 Score=13.49 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHH
Q 027414 20 IPNIIGYVRVLLN 32 (223)
Q Consensus 20 iPN~IT~~Ri~l~ 32 (223)
+||..+|+|....
T Consensus 2 ~s~tasylRlwaL 14 (26)
T 2jtw_A 2 KSHTASYLRLWAL 14 (26)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCcchhHHHHHHh
Confidence 5899999997643
No 9
>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix bundle, alpha/beta domain, PAT protein, lipid binding, peptide binding; 2.80A {Mus musculus} SCOP: a.24.23.1
Probab=2.92 E-value=2.4e+02 Score=23.90 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=28.6
Q ss_pred HhhcchhHHHHhhCCCCCchhhhhhhhhHHHH
Q 027414 54 FVCDAIDGWCARKFNQVSTFGAVLDMVTDRIS 85 (223)
Q Consensus 54 ~l~D~lDG~iAR~~~q~S~fGa~LD~vaDr~~ 85 (223)
.+.|.-||.+|...++..+....+|.+.|.+.
T Consensus 192 Sf~Dl~~~~L~qsr~~l~~~~~sld~v~d~l~ 223 (247)
T 1szi_A 192 SFQDLSAGVLAQTRERIARAREALDNTVEYVA 223 (247)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999654
No 10
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=2.83 E-value=5.7e+02 Score=19.59 Aligned_cols=32 Identities=13% Similarity=-0.016 Sum_probs=26.1
Q ss_pred cchhHHHHhhCCCCCchhhhhhhhhHHHHHHHH
Q 027414 57 DAIDGWCARKFNQVSTFGAVLDMVTDRISTACL 89 (223)
Q Consensus 57 D~lDG~iAR~~~q~S~fGa~LD~vaDr~~~~~l 89 (223)
|.+|=-+++..+ .+.+.+.||..++|+.-++.
T Consensus 48 Efv~lils~i~~-~~~~~e~l~~Faer~VqlGw 79 (136)
T 2bnl_A 48 EYIDILLLSVKD-ENAAESQISELALRAVQIGL 79 (136)
T ss_dssp HHHHHHHTCSSC-TTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccc-chhHHHHHHHHHHHHHHcCC
Confidence 566777787777 89999999999999876553
Done!