Query 027414
Match_columns 223
No_of_seqs 264 out of 1560
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 15:56:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027414.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027414hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nekc_ f.21.2.2 (C:) Succinat 8.3 91 0.0066 21.4 2.3 22 1-22 2-23 (129)
2 d2cx6a1 c.9.1.1 (A:1-90) Hypot 7.9 98 0.0071 20.4 2.2 25 62-86 20-44 (90)
3 d1ay7b_ c.9.1.1 (B:) Barstar ( 5.3 1.6E+02 0.012 19.0 2.2 24 62-85 19-42 (89)
4 d2a5yb1 a.4.5.80 (B:386-543) C 3.2 92 0.0067 21.9 -0.7 26 53-78 35-60 (158)
5 d2al6a2 b.55.1.5 (A:254-363) F 3.0 1.7E+02 0.012 20.0 0.6 11 53-63 85-95 (110)
6 d1t7sa_ a.7.7.1 (A:) BAG-famil 2.7 3.3E+02 0.024 19.0 2.0 20 199-218 100-119 (129)
7 d1gaka_ a.19.1.1 (A:) SP18 {Gr 2.6 4.8E+02 0.035 18.1 2.7 48 74-122 19-66 (137)
8 d1gpma2 c.23.16.1 (A:3-207) GM 2.4 2.7E+02 0.02 19.5 1.2 24 139-163 70-93 (205)
9 d1ppjj_ f.23.14.1 (J:) Subunit 2.3 3.7E+02 0.027 14.4 1.4 12 74-85 3-14 (33)
10 d1nc8a_ g.40.1.1 (A:) HIV nucl 2.3 1.5E+02 0.011 15.6 -0.4 11 60-70 15-25 (29)
No 1
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=8.26 E-value=91 Score=21.40 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=15.6
Q ss_pred CCCccccCccccccccccchhh
Q 027414 1 MANVKKTAPRLRKLSVYLYIPN 22 (223)
Q Consensus 1 m~~~~~~~p~~~~~~~~~~iPN 22 (223)
++|.||++|..-+...+..-.+
T Consensus 2 ~~~~~~~RP~sPhL~iyk~~~t 23 (129)
T d1nekc_ 2 IRNVKKQRPVNLDLQTIRFPIT 23 (129)
T ss_dssp CTTCCCCCCBCCCGGGSCCCHH
T ss_pred chhcccCCCCCCCcceeCchHH
Confidence 4799999998776666554433
No 2
>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia coli [TaxId: 562]}
Probab=7.92 E-value=98 Score=20.36 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=21.5
Q ss_pred HHHhhCCCCCchhhhhhhhhHHHHH
Q 027414 62 WCARKFNQVSTFGAVLDMVTDRIST 86 (223)
Q Consensus 62 ~iAR~~~q~S~fGa~LD~vaDr~~~ 86 (223)
.+|++++-..-+|.-+|.+-|-++.
T Consensus 20 ~~~~~l~fp~~fG~NlDAl~D~lt~ 44 (90)
T d2cx6a1 20 DFSQTFGLAKDKVRDLDSLWDVLMN 44 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHHT
T ss_pred HHHHHcCCcchhCCCHHHHHHHHcc
Confidence 4689999999999999999996653
No 3
>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=5.31 E-value=1.6e+02 Score=19.00 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=20.6
Q ss_pred HHHhhCCCCCchhhhhhhhhHHHH
Q 027414 62 WCARKFNQVSTFGAVLDMVTDRIS 85 (223)
Q Consensus 62 ~iAR~~~q~S~fGa~LD~vaDr~~ 85 (223)
.++++++...-+|.-+|.+-|-++
T Consensus 19 ~~~~~l~~p~~~G~N~DAl~D~lt 42 (89)
T d1ay7b_ 19 TLKKELALPEYYGENLDALWDCLT 42 (89)
T ss_dssp HHHHHTTCCTTCCSSHHHHHHHHH
T ss_pred HHHHHcCCCcccCCCHHHHHHHHc
Confidence 578899999999999999999443
No 4
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=3.16 E-value=92 Score=21.94 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHhhcchhHHHHhhCCCCCchhhhhh
Q 027414 53 SFVCDAIDGWCARKFNQVSTFGAVLD 78 (223)
Q Consensus 53 s~l~D~lDG~iAR~~~q~S~fGa~LD 78 (223)
|.=-|-+|..+|.+++.-|+-|+.|.
T Consensus 35 snee~qlddevadrlkrlskrgalls 60 (158)
T d2a5yb1 35 SNEEEQLDDEVADRLKRLSKRGALLS 60 (158)
T ss_dssp ----CCCTHHHHHHHHHTTTBSSCSE
T ss_pred CChHhhhhHHHHHHHHHHHhccchhc
Confidence 44568899999999988899888763
No 5
>d2al6a2 b.55.1.5 (A:254-363) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.03 E-value=1.7e+02 Score=20.03 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=8.7
Q ss_pred HHhhcchhHHH
Q 027414 53 SFVCDAIDGWC 63 (223)
Q Consensus 53 s~l~D~lDG~i 63 (223)
--+.|.+|||.
T Consensus 85 e~lAdLIdGYC 95 (110)
T d2al6a2 85 ENMADLIDGYC 95 (110)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhheE
Confidence 35789999987
No 6
>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1, BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=2.74 E-value=3.3e+02 Score=19.03 Aligned_cols=20 Identities=25% Similarity=0.099 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 027414 199 GWAIKQTINVIQVTCTSYDG 218 (223)
Q Consensus 199 ~~~~K~~~n~~ql~l~~~d~ 218 (223)
-.--|.++|-+|-+|++.|.
T Consensus 100 R~kRK~LV~~iQ~~L~~~D~ 119 (129)
T d1t7sa_ 100 REKRKTLVNGIQTLLNQNDA 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 45679999999999877774
No 7
>d1gaka_ a.19.1.1 (A:) SP18 {Green abalone (Haliotis fulgens) [TaxId: 6456]}
Probab=2.55 E-value=4.8e+02 Score=18.11 Aligned_cols=48 Identities=6% Similarity=-0.009 Sum_probs=31.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 027414 74 GAVLDMVTDRISTACLLVILSQVYRPGLVFVSLLALDIGSHWLQMYSTF 122 (223)
Q Consensus 74 Ga~LD~vaDr~~~~~l~~~L~~~~~~~~~~~lii~~di~s~~~~~~~s~ 122 (223)
=.+||+-+++.---.. =.=+...||.|..+.-..|+=+..|.|-|+..
T Consensus 19 ~~fLD~~~~kfkkr~~-~m~~~l~p~~~~~l~y~nreRlm~~C~~Y~~~ 66 (137)
T d1gaka_ 19 VNFLDEEMHKLVKRFR-DMRWNLGPGFVFLLKKVNRERMMRYCMDYARY 66 (137)
T ss_dssp HHHHHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHHHHHHHBHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578887777654433 11112234667777788899899999988754
No 8
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}
Probab=2.39 E-value=2.7e+02 Score=19.55 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=16.5
Q ss_pred hhhhhccCchhhHHHHHHHHHHHHH
Q 027414 139 LFKAYYGNRMFMGYCCVACEVLYLI 163 (223)
Q Consensus 139 ll~~YY~~~~~l~~~c~~~e~~~i~ 163 (223)
+.+.+..++++|| +|.|.|++...
T Consensus 70 ~~~~~~~~~PiLG-IClG~Qlla~~ 93 (205)
T d1gpma2 70 PQYVFEAGVPVFG-VCYGMQTMAMQ 93 (205)
T ss_dssp CGGGGTSSSCEEE-ETHHHHHHHHH
T ss_pred HHHHHhCCCCEEE-eccchhhhhhh
Confidence 3445555666776 58899998864
No 9
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.34 E-value=3.7e+02 Score=14.35 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=6.1
Q ss_pred hhhhhhhhHHHH
Q 027414 74 GAVLDMVTDRIS 85 (223)
Q Consensus 74 Ga~LD~vaDr~~ 85 (223)
...+|..+|++.
T Consensus 3 ErafD~~~d~i~ 14 (33)
T d1ppjj_ 3 ERAFDQGADAIY 14 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhhHHHHH
Confidence 344555555544
No 10
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=2.28 E-value=1.5e+02 Score=15.57 Aligned_cols=11 Identities=27% Similarity=0.447 Sum_probs=6.6
Q ss_pred hHHHHhhCCCC
Q 027414 60 DGWCARKFNQV 70 (223)
Q Consensus 60 DG~iAR~~~q~ 70 (223)
+|++||.....
T Consensus 15 eGH~ar~CrAP 25 (29)
T d1nc8a_ 15 EGHSARQCRAP 25 (29)
T ss_dssp BSSCGGGCCSS
T ss_pred cchhhhhccCc
Confidence 56677765543
Done!