Query 027416
Match_columns 223
No_of_seqs 233 out of 1546
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:37:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2303 Predicted NAD synthase 100.0 1.7E-55 3.6E-60 403.6 19.6 220 1-221 254-473 (706)
2 PLN02339 NAD+ synthase (glutam 100.0 3E-41 6.5E-46 329.5 23.7 221 1-221 253-473 (700)
3 PRK02628 nadE NAD synthetase; 99.9 3.5E-23 7.6E-28 202.4 19.5 179 1-211 258-445 (679)
4 PF02540 NAD_synthase: NAD syn 99.8 2E-18 4.2E-23 150.0 13.2 94 80-209 2-95 (242)
5 PTZ00323 NAD+ synthase; Provis 99.7 2E-17 4.4E-22 147.3 14.2 107 73-211 23-129 (294)
6 PRK13981 NAD synthetase; Provi 99.7 3.2E-17 7E-22 156.6 16.0 101 74-210 258-358 (540)
7 PRK00768 nadE NAD synthetase; 99.7 1.9E-16 4.2E-21 139.2 13.2 105 75-208 17-122 (268)
8 cd00553 NAD_synthase NAD+ synt 99.7 9.7E-16 2.1E-20 133.1 13.6 98 75-208 2-99 (248)
9 COG0171 NadE NAD synthase [Coe 99.7 9.1E-16 2E-20 134.9 12.5 105 74-210 3-107 (268)
10 PRK13980 NAD synthetase; Provi 99.6 1.2E-14 2.6E-19 127.6 13.6 96 75-206 9-104 (265)
11 PRK00876 nadE NAD synthetase; 99.5 5.9E-13 1.3E-17 120.2 12.7 93 75-203 11-104 (326)
12 TIGR00552 nadE NAD+ synthetase 99.4 9.2E-12 2E-16 108.4 12.3 91 77-203 3-93 (250)
13 COG1606 ATP-utilizing enzymes 99.0 1.5E-09 3.3E-14 94.2 8.6 76 85-199 8-83 (269)
14 PF03054 tRNA_Me_trans: tRNA m 99.0 1.8E-09 3.8E-14 98.8 8.1 81 97-215 1-93 (356)
15 COG0482 TrmU Predicted tRNA(5- 98.9 4.6E-09 1E-13 95.5 9.6 84 96-217 3-96 (356)
16 TIGR00268 conserved hypothetic 98.9 1.4E-08 3.1E-13 88.5 11.1 75 86-200 4-78 (252)
17 PLN02347 GMP synthetase 98.7 9.3E-08 2E-12 91.8 11.2 76 85-197 217-294 (536)
18 TIGR00884 guaA_Cterm GMP synth 98.7 1E-07 2.2E-12 85.9 10.4 77 83-199 6-83 (311)
19 PF00733 Asn_synthase: Asparag 98.7 1.2E-07 2.5E-12 80.6 8.8 81 79-198 2-82 (255)
20 PRK14665 mnmA tRNA-specific 2- 98.6 1.9E-07 4.2E-12 85.6 10.4 66 97-200 6-73 (360)
21 PRK00074 guaA GMP synthase; Re 98.6 2.6E-07 5.7E-12 88.3 10.2 81 78-198 200-281 (511)
22 cd01990 Alpha_ANH_like_I This 98.6 2.2E-07 4.9E-12 77.8 8.4 63 99-198 1-63 (202)
23 KOG0571 Asparagine synthase (g 98.6 4.7E-07 1E-11 83.8 10.8 92 83-206 210-305 (543)
24 PRK09431 asnB asparagine synth 98.6 1.1E-06 2.5E-11 84.8 13.7 106 75-206 204-313 (554)
25 cd01996 Alpha_ANH_like_III Thi 98.6 4.3E-07 9.3E-12 72.7 9.1 68 98-202 3-71 (154)
26 COG0603 Predicted PP-loop supe 98.6 2.6E-07 5.6E-12 79.2 8.1 66 96-199 2-67 (222)
27 TIGR00364 exsB protein. This p 98.6 2.4E-07 5.1E-12 77.9 7.8 62 99-198 1-62 (201)
28 TIGR03108 eps_aminotran_1 exos 98.6 6.4E-07 1.4E-11 87.4 11.9 88 74-198 234-323 (628)
29 PRK00919 GMP synthase subunit 98.6 5E-07 1.1E-11 81.3 10.3 82 77-199 5-86 (307)
30 PRK11106 queuosine biosynthesi 98.6 2.5E-07 5.4E-12 80.1 8.1 64 97-198 2-66 (231)
31 TIGR03573 WbuX N-acetyl sugar 98.5 5.5E-07 1.2E-11 82.0 10.3 72 89-197 50-123 (343)
32 TIGR00420 trmU tRNA (5-methyla 98.5 7.2E-07 1.6E-11 81.6 10.7 64 98-199 2-75 (352)
33 PRK14664 tRNA-specific 2-thiou 98.5 8.2E-07 1.8E-11 81.6 10.2 63 97-200 6-68 (362)
34 PRK04527 argininosuccinate syn 98.5 6.3E-07 1.4E-11 83.1 8.9 70 97-204 3-74 (400)
35 cd01997 GMP_synthase_C The C-t 98.5 7.3E-07 1.6E-11 79.8 8.9 63 98-197 1-64 (295)
36 cd01991 Asn_Synthase_B_C The C 98.5 7E-07 1.5E-11 77.3 8.3 64 97-197 16-79 (269)
37 PF06508 QueC: Queuosine biosy 98.4 6.7E-07 1.5E-11 76.2 7.9 65 98-200 1-66 (209)
38 TIGR01536 asn_synth_AEB aspara 98.4 1.9E-06 4E-11 81.3 11.5 88 74-197 229-319 (467)
39 TIGR03104 trio_amidotrans aspa 98.4 1.5E-06 3.3E-11 84.4 11.2 87 74-197 236-327 (589)
40 KOG2805 tRNA (5-methylaminomet 98.4 1.5E-06 3.3E-11 77.7 9.8 85 96-218 5-101 (377)
41 PLN02549 asparagine synthase ( 98.4 2.1E-06 4.6E-11 83.2 11.7 98 79-206 206-307 (578)
42 cd01998 tRNA_Me_trans tRNA met 98.4 1E-06 2.2E-11 80.5 9.1 64 98-199 1-72 (349)
43 PRK00143 mnmA tRNA-specific 2- 98.4 1.3E-06 2.7E-11 79.8 8.9 65 98-200 2-76 (346)
44 PTZ00077 asparagine synthetase 98.4 2.8E-06 6E-11 82.6 11.1 103 76-206 215-321 (586)
45 PRK00509 argininosuccinate syn 98.3 3.9E-06 8.4E-11 78.0 10.3 65 96-199 2-67 (399)
46 PRK01565 thiamine biosynthesis 98.3 2.5E-06 5.4E-11 79.2 8.9 67 99-203 179-251 (394)
47 PRK13820 argininosuccinate syn 98.3 2.6E-06 5.7E-11 79.0 8.9 70 96-202 2-72 (394)
48 cd01993 Alpha_ANH_like_II This 98.3 3.5E-06 7.7E-11 68.8 8.4 70 98-199 1-72 (185)
49 COG0367 AsnB Asparagine syntha 98.3 7.2E-06 1.6E-10 79.1 11.5 86 75-196 207-294 (542)
50 cd01994 Alpha_ANH_like_IV This 98.3 2.6E-06 5.6E-11 71.8 7.5 62 98-197 1-68 (194)
51 TIGR02432 lysidine_TilS_N tRNA 98.2 6.5E-06 1.4E-10 68.0 8.6 66 98-197 1-68 (189)
52 cd01713 PAPS_reductase This do 98.2 9.7E-06 2.1E-10 64.5 8.0 68 98-200 1-68 (173)
53 PRK14561 hypothetical protein; 98.1 8.4E-06 1.8E-10 68.6 7.3 60 98-198 2-61 (194)
54 PLN00200 argininosuccinate syn 98.1 1.4E-05 2.9E-10 74.5 8.6 65 97-199 6-71 (404)
55 PRK08576 hypothetical protein; 98.1 2.7E-05 5.8E-10 73.3 10.2 78 77-192 215-292 (438)
56 TIGR00032 argG argininosuccina 98.1 1.5E-05 3.2E-10 74.1 8.4 65 98-201 1-67 (394)
57 cd01999 Argininosuccinate_Synt 98.0 1.8E-05 3.9E-10 73.4 8.0 64 99-200 1-65 (385)
58 cd01992 PP-ATPase N-terminal d 98.0 3.1E-05 6.8E-10 63.5 8.5 62 98-193 1-64 (185)
59 PF01171 ATP_bind_3: PP-loop f 97.9 4E-05 8.7E-10 63.3 7.5 66 98-197 1-68 (182)
60 cd01995 ExsB ExsB is a transcr 97.9 0.00011 2.4E-09 59.7 9.8 62 98-198 1-62 (169)
61 TIGR00342 thiazole biosynthesi 97.9 7.3E-05 1.6E-09 68.9 9.5 67 98-202 174-246 (371)
62 PRK13795 hypothetical protein; 97.8 0.00014 3.1E-09 71.4 11.1 82 79-199 227-308 (636)
63 PRK08349 hypothetical protein; 97.8 0.00017 3.7E-09 60.5 9.2 19 98-116 2-20 (198)
64 TIGR03679 arCOG00187 arCOG0018 97.8 0.00013 2.9E-09 62.4 8.6 23 174-196 43-65 (218)
65 PRK10696 tRNA 2-thiocytidine b 97.8 0.00012 2.6E-09 64.0 8.2 68 96-196 29-96 (258)
66 cd01712 ThiI ThiI is required 97.7 0.00011 2.3E-09 60.4 7.1 19 98-116 1-19 (177)
67 PRK08384 thiamine biosynthesis 97.6 0.00024 5.2E-09 65.8 8.5 51 98-189 182-232 (381)
68 PRK13794 hypothetical protein; 97.6 0.00095 2.1E-08 63.6 12.1 74 85-196 237-310 (479)
69 PRK05253 sulfate adenylyltrans 97.5 0.00093 2E-08 60.1 11.0 67 97-197 28-94 (301)
70 COG0519 GuaA GMP synthase, PP- 97.5 0.00042 9.1E-09 61.4 8.0 67 94-197 19-86 (315)
71 PF01507 PAPS_reduct: Phosphoa 97.5 0.00085 1.8E-08 53.9 9.3 67 98-202 1-67 (174)
72 PRK10660 tilS tRNA(Ile)-lysidi 97.5 0.00046 1E-08 64.9 8.6 76 86-196 7-84 (436)
73 COG0037 MesJ tRNA(Ile)-lysidin 97.5 0.00031 6.7E-09 61.9 7.0 67 97-199 22-90 (298)
74 PF02568 ThiI: Thiamine biosyn 97.4 0.00021 4.5E-09 60.5 4.6 71 98-206 5-83 (197)
75 PRK02090 phosphoadenosine phos 97.4 0.0013 2.8E-08 57.0 9.3 73 86-197 31-103 (241)
76 PF00764 Arginosuc_synth: Argi 97.3 0.00078 1.7E-08 62.5 7.1 65 100-202 1-67 (388)
77 PRK08557 hypothetical protein; 97.2 0.004 8.7E-08 58.4 11.6 80 79-196 162-243 (417)
78 COG0137 ArgG Argininosuccinate 97.2 0.0019 4.1E-08 59.6 8.5 70 96-203 4-75 (403)
79 PRK05370 argininosuccinate syn 97.1 0.0024 5.2E-08 60.0 8.7 74 95-206 10-85 (447)
80 cd01986 Alpha_ANH_like Adenine 97.1 0.0016 3.5E-08 48.8 6.0 18 99-116 1-18 (103)
81 COG2117 Predicted subunit of t 97.0 0.0032 6.8E-08 51.9 7.5 58 99-196 3-60 (198)
82 PRK01269 tRNA s(4)U8 sulfurtra 97.0 0.0018 4E-08 61.6 6.7 65 98-200 179-249 (482)
83 TIGR00289 conserved hypothetic 96.9 0.0036 7.7E-08 54.0 7.7 35 174-208 45-79 (222)
84 KOG1622 GMP synthase [Nucleoti 96.9 0.0093 2E-07 56.1 10.8 22 95-116 229-250 (552)
85 TIGR00434 cysH phosophoadenyly 96.5 0.023 5E-07 48.0 9.6 62 97-196 14-75 (212)
86 TIGR02039 CysD sulfate adenyly 96.4 0.052 1.1E-06 48.8 11.4 67 97-197 20-86 (294)
87 TIGR02057 PAPS_reductase phosp 96.3 0.041 8.9E-07 47.4 10.0 57 96-189 25-81 (226)
88 COG1365 Predicted ATPase (PP-l 96.3 0.0039 8.4E-08 53.5 3.4 77 78-195 34-118 (255)
89 PRK12563 sulfate adenylyltrans 96.2 0.079 1.7E-06 48.0 11.6 66 97-196 38-103 (312)
90 COG0301 ThiI Thiamine biosynth 95.8 0.046 1E-06 50.8 8.4 94 75-206 118-254 (383)
91 COG0175 CysH 3'-phosphoadenosi 95.6 0.11 2.4E-06 45.7 9.6 69 96-202 39-107 (261)
92 cd01984 AANH_like Adenine nucl 95.4 0.098 2.1E-06 37.3 7.3 18 99-116 1-18 (86)
93 TIGR00290 MJ0570_dom MJ0570-re 95.1 0.061 1.3E-06 46.4 6.2 34 175-208 46-79 (223)
94 KOG1706 Argininosuccinate synt 94.4 0.13 2.8E-06 46.6 6.7 68 95-204 4-71 (412)
95 TIGR03183 DNA_S_dndC putative 94.0 0.26 5.6E-06 46.8 8.1 21 96-116 13-33 (447)
96 PRK06850 hypothetical protein; 93.9 0.39 8.4E-06 46.3 9.2 21 96-116 34-54 (507)
97 PF01902 ATP_bind_4: ATP-bindi 93.8 0.059 1.3E-06 46.4 3.2 35 176-210 47-81 (218)
98 COG2102 Predicted ATPases of P 91.5 0.56 1.2E-05 40.5 6.1 24 174-197 46-69 (223)
99 KOG0573 Asparagine synthase [A 89.4 0.27 5.9E-06 46.5 2.6 20 97-116 251-270 (520)
100 COG3969 Predicted phosphoadeno 88.0 1.5 3.2E-05 40.5 6.2 24 95-118 26-49 (407)
101 PLN02309 5'-adenylylsulfate re 79.1 14 0.00031 35.2 9.2 33 161-193 136-168 (457)
102 TIGR00424 APS_reduc 5'-adenyly 78.1 16 0.00035 35.0 9.2 33 161-193 141-173 (463)
103 COG2205 KdpD Osmosensitive K+ 78.0 29 0.00063 35.6 11.2 77 97-207 249-331 (890)
104 PRK10490 sensor protein KdpD; 75.7 47 0.001 34.2 12.4 48 161-208 281-334 (895)
105 TIGR02055 APS_reductase thiore 73.8 9.6 0.00021 31.7 5.8 35 161-195 19-53 (191)
106 cd01455 vWA_F11C1-5a_type Von 68.9 21 0.00045 30.2 6.7 54 159-212 113-167 (191)
107 KOG2840 Uncharacterized conser 64.8 20 0.00043 32.9 6.1 73 98-200 53-125 (347)
108 PRK12358 putative 6-phosphoglu 61.6 12 0.00027 32.2 4.2 36 74-111 7-42 (239)
109 COG0363 NagB 6-phosphogluconol 60.6 13 0.00029 32.3 4.2 34 73-106 6-41 (238)
110 TIGR01198 pgl 6-phosphoglucono 56.5 19 0.00042 30.9 4.5 32 75-106 4-37 (233)
111 PRK09762 galactosamine-6-phosp 53.6 20 0.00044 30.7 4.2 31 74-106 7-37 (232)
112 KOG3147 6-phosphogluconolacton 50.6 23 0.00051 31.1 4.0 34 73-106 14-49 (252)
113 cd01399 GlcN6P_deaminase GlcN6 47.4 21 0.00045 29.9 3.2 29 78-108 2-30 (232)
114 PRK00443 nagB glucosamine-6-ph 46.6 28 0.00061 29.9 4.0 35 74-108 7-44 (261)
115 PTZ00285 glucosamine-6-phospha 46.4 33 0.00071 29.7 4.4 36 74-109 7-45 (253)
116 TIGR00502 nagB glucosamine-6-p 45.5 33 0.00071 29.8 4.2 38 74-111 7-47 (259)
117 PLN02360 probable 6-phosphoglu 44.3 38 0.00083 29.7 4.5 34 73-106 16-51 (268)
118 COG4825 Uncharacterized membra 44.2 50 0.0011 30.1 5.1 103 86-200 198-310 (395)
119 PF01182 Glucosamine_iso: Gluc 42.9 34 0.00074 28.5 3.8 31 77-109 3-33 (199)
120 cd01400 6PGL 6PGL: 6-Phosphogl 41.7 37 0.00081 28.7 3.9 28 78-107 6-33 (219)
121 cd00458 SugarP_isomerase Sugar 40.8 41 0.00088 27.2 3.9 26 79-106 4-29 (169)
122 PRK13287 amiF formamidase; Pro 38.1 32 0.0007 31.2 3.1 29 1-32 241-269 (333)
123 PLN02590 probable tyrosine dec 35.7 1.7E+02 0.0037 28.6 7.8 121 76-203 168-330 (539)
124 cd03418 GRX_GRXb_1_3_like Glut 35.4 91 0.002 20.8 4.5 46 174-220 11-59 (75)
125 PRK13286 amiE acylamide amidoh 34.9 41 0.0009 30.7 3.3 31 2-35 243-273 (345)
126 cd03030 GRX_SH3BGR Glutaredoxi 33.5 1.7E+02 0.0037 21.4 5.9 35 163-197 3-40 (92)
127 PRK06934 flavodoxin; Provision 32.4 88 0.0019 26.9 4.7 27 173-199 71-97 (221)
128 TIGR02189 GlrX-like_plant Glut 30.7 99 0.0022 22.7 4.3 36 176-211 21-58 (99)
129 cd03028 GRX_PICOT_like Glutare 30.1 2E+02 0.0044 20.4 6.0 35 176-211 26-60 (90)
130 cd07565 aliphatic_amidase alip 29.9 49 0.0011 29.1 2.9 28 2-32 230-257 (291)
131 TIGR02728 spore_gerQ spore coa 29.8 74 0.0016 23.1 3.2 34 161-194 19-52 (82)
132 PF06057 VirJ: Bacterial virul 29.3 1E+02 0.0022 26.1 4.5 38 75-112 46-84 (192)
133 PF09547 Spore_IV_A: Stage IV 29.1 2.8E+02 0.0061 26.8 7.8 50 161-210 183-233 (492)
134 TIGR02194 GlrX_NrdH Glutaredox 28.8 1.1E+02 0.0023 20.7 3.9 24 174-197 10-33 (72)
135 TIGR00365 monothiol glutaredox 28.5 1.1E+02 0.0024 22.4 4.1 34 177-211 31-64 (97)
136 cd04121 Rab40 Rab40 subfamily. 27.8 1.3E+02 0.0029 24.6 5.0 43 173-215 127-175 (189)
137 PRK02122 glucosamine-6-phospha 27.4 58 0.0013 32.6 3.1 41 71-111 31-73 (652)
138 PRK08118 topology modulation p 27.1 1.5E+02 0.0032 23.9 5.0 54 165-221 6-67 (167)
139 PF15591 Imm17: Immunity prote 26.8 38 0.00082 24.2 1.3 16 92-107 22-37 (74)
140 PF04273 DUF442: Putative phos 26.7 1.5E+02 0.0032 22.5 4.7 48 161-208 31-84 (110)
141 cd02020 CMPK Cytidine monophos 26.4 2.7E+02 0.0059 20.7 6.3 26 167-194 6-31 (147)
142 PTZ00372 endonuclease 4-like p 25.9 4.7E+02 0.01 24.8 8.7 28 86-113 121-149 (413)
143 KOG3679 Predicted coiled-coil 25.6 75 0.0016 30.1 3.3 30 79-108 527-556 (802)
144 COG1751 Uncharacterized conser 25.0 91 0.002 25.8 3.3 33 167-199 7-39 (186)
145 TIGR00636 PduO_Nterm ATP:cob(I 24.6 3.4E+02 0.0075 22.3 6.8 48 77-126 79-127 (171)
146 PF12682 Flavodoxin_4: Flavodo 23.5 96 0.0021 24.9 3.3 25 172-196 10-34 (156)
147 cd03031 GRX_GRX_like Glutaredo 23.0 2.3E+02 0.0049 22.7 5.3 26 171-196 14-39 (147)
148 COG3494 Uncharacterized protei 22.7 2E+02 0.0042 25.7 5.2 106 75-188 48-168 (279)
149 KOG0078 GTP-binding protein SE 21.4 1.5E+02 0.0032 25.5 4.1 42 172-213 133-180 (207)
150 TIGR03723 bact_gcp putative gl 20.4 1.1E+02 0.0025 27.3 3.4 27 79-107 243-269 (314)
151 PRK03839 putative kinase; Prov 20.3 1.5E+02 0.0033 23.6 3.8 28 165-194 5-32 (180)
No 1
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.7e-55 Score=403.64 Aligned_cols=220 Identities=56% Similarity=0.870 Sum_probs=209.8
Q ss_pred CceecCCCCCCCceEEEEEEehhhHHHHHhhcCchhhhhhccCCccEEEEeeccCCCCCCCCCCCCCCcCCCCCCHHHHH
Q 027416 1 MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIA 80 (223)
Q Consensus 1 lla~~~rFs~~d~~v~~a~vDl~~~r~~R~~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~eEi~ 80 (223)
++||++|||++||+|++|+|||+.+|++|...+|++.++.....|++|+|+|.+.........|++|+++.+++|+|||+
T Consensus 254 vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~e~~~hsPeeEia 333 (706)
T KOG2303|consen 254 VLAQGSQFSLDDVEVVTATVDLEDVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPIEWKYHSPEEEIA 333 (706)
T ss_pred eeeecccccccceEEEEEEecHHHHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCcccccCCcHHHhc
Confidence 68999999999999999999999999999998999877766678999999999986554455889999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcce
Q 027416 81 FGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRI 160 (223)
Q Consensus 81 ~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 160 (223)
.+++||||||||++|..||+|+||||+||+++|+||++||+++++++..|+++|+.|++++..+ ..++|.+|++||+++
T Consensus 334 ~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~~p~dp~~l~nri 412 (706)
T KOG2303|consen 334 LGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISYTPTDPADLCNRI 412 (706)
T ss_pred cCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCcCCCCHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999877 689999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhCCCCCceeccc
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVTMV 221 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g~~p~~~~~~~ 221 (223)
++||||+++|||++|+.+|++||++||++|..++||.+|.+.++.|..++|+.|+|+++|-
T Consensus 413 ~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~gg 473 (706)
T KOG2303|consen 413 LYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGG 473 (706)
T ss_pred hhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 2
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=3e-41 Score=329.49 Aligned_cols=221 Identities=78% Similarity=1.172 Sum_probs=195.7
Q ss_pred CceecCCCCCCCceEEEEEEehhhHHHHHhhcCchhhhhhccCCccEEEEeeccCCCCCCCCCCCCCCcCCCCCCHHHHH
Q 027416 1 MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIA 80 (223)
Q Consensus 1 lla~~~rFs~~d~~v~~a~vDl~~~r~~R~~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~eEi~ 80 (223)
+++++++|++++.++++|+||+++++..|.++.++.........+.++.++|+++........+.++++..++.|++||.
T Consensus 253 ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ei~ 332 (700)
T PLN02339 253 VVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSLSLVPSSPLKIRYHSPEEEIA 332 (700)
T ss_pred EeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhhhhcccccceeEEeeccCCccccccCCCCccccCCCCCHHHHH
Confidence 57899999987778999999999999999998888765443344677888888764321111345566666778899999
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcce
Q 027416 81 FGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRI 160 (223)
Q Consensus 81 ~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 160 (223)
.++++||||||+++|.+|+|||||||+|||++|+||+.||++++++++.|+++|+.+++++.+.+..+.|.++++|++++
T Consensus 333 ~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (700)
T PLN02339 333 LGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRI 412 (700)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcce
Confidence 99999999999999999999999999999999999999999999999999999999999998776678999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhCCCCCceeccc
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVTMV 221 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g~~p~~~~~~~ 221 (223)
++|||||+++||+.|+++|++||+.||++|++|+|+++++++.+.++..+|++|.|+++|-
T Consensus 413 ~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~ 473 (700)
T PLN02339 413 FYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGG 473 (700)
T ss_pred eEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999987653
No 3
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.91 E-value=3.5e-23 Score=202.37 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=133.2
Q ss_pred CceecCCCCCCCceEEEEEEehhhHHHHHhhcCchhhhhh---ccCCccEEEEeeccCCCCCCCC---CCCCCCcCCC--
Q 027416 1 MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQAS---CKTKISSVAVQYSLCQPFNLKM---SLSGPLKITY-- 72 (223)
Q Consensus 1 lla~~~rFs~~d~~v~~a~vDl~~~r~~R~~~~s~~~~~~---~~~~~~~v~~~~~~~~~~~~~~---~~~~~v~~~~-- 72 (223)
+++++++|+.++ ++++++||++.++..|.+..++..... ....+++|.+++..+.....+. .+.|++|...
T Consensus 258 vla~a~~f~~~e-~l~~adiDl~~v~~~R~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 336 (679)
T PRK02628 258 LLAESERFPREE-QLIVADVDLERLRQERLRNGSFDDNARHRDESAPFRTIPFALDPPAGDLGLRRPVERFPFVPSDPAR 336 (679)
T ss_pred EEEecCCCCCCC-cEEEEEEcHHHHHHHHhhcCCcccchhcccccCCceEEEeeccCCcccccccCcCCCCCCCCcChhh
Confidence 478899998654 799999999999999988777654331 1134655544433222211111 4445555322
Q ss_pred -CCCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCC
Q 027416 73 -HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPT 151 (223)
Q Consensus 73 -~~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~ 151 (223)
...++++..++++||+||++++|.++++||||||+||+++++++ .++++. ++...
T Consensus 337 ~~~~~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~----~~a~~~--------------lg~~~------ 392 (679)
T PRK02628 337 LDQRCYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVA----AKAMDR--------------LGLPR------ 392 (679)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH----HHHHHh--------------hCCCc------
Confidence 23579999999999999999999999999999999999988776 233332 22110
Q ss_pred chHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhC
Q 027416 152 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 211 (223)
Q Consensus 152 ~~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g 211 (223)
.++++++||+.++++.+.++|++||+.||++|.+|+|+++++++...+...++
T Consensus 393 -------~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~~~~~~~~~~l~~~~~ 445 (679)
T PRK02628 393 -------KNILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHPFA 445 (679)
T ss_pred -------ceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcHHHHHHHHHHhccccc
Confidence 24899999999999999999999999999999999999999999887765443
No 4
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.78 E-value=2e-18 Score=149.98 Aligned_cols=94 Identities=37% Similarity=0.491 Sum_probs=84.5
Q ss_pred HhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcc
Q 027416 80 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKR 159 (223)
Q Consensus 80 ~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 159 (223)
.+.+..||++|++++|.+|+|||||||+|||++|+|+ .+++ +.+
T Consensus 2 ~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La-------~~Al--------------g~~--------------- 45 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALA-------VKAL--------------GPD--------------- 45 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHH-------HHHH--------------GGG---------------
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHH-------HHHh--------------hhc---------------
Confidence 5678999999999999999999999999999999987 5553 322
Q ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHh
Q 027416 160 IFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL 209 (223)
Q Consensus 160 ~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~ 209 (223)
++++++||+.++++.+.++|+++|+.||++|.+|+|+++++++.+.+...
T Consensus 46 ~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~~~~~ 95 (242)
T PF02540_consen 46 NVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDPIFDAFLKSLEPA 95 (242)
T ss_dssp EEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHHHHHHHHHHHHHH
T ss_pred cccccccccccCChHHHHHHHHHHHHhCCCeeccchHHHHHHHhhhhccc
Confidence 49999999999999999999999999999999999999999999876654
No 5
>PTZ00323 NAD+ synthase; Provisional
Probab=99.75 E-value=2e-17 Score=147.27 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=90.2
Q ss_pred CCCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCc
Q 027416 73 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTE 152 (223)
Q Consensus 73 ~~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~ 152 (223)
....+++......+|++||+++|.++++||||||+||+++|+++ .+++|. + .
T Consensus 23 ~~~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa-------~~alg~--~---------~---------- 74 (294)
T PTZ00323 23 AFNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALC-------ARAMRM--P---------N---------- 74 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHHhcc--c---------c----------
Confidence 44567889999999999999999999999999999999999886 444321 0 0
Q ss_pred hHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhC
Q 027416 153 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 211 (223)
Q Consensus 153 ~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g 211 (223)
.+...+++++||+ +|+..+.++|+++|+.+|++|++|+|+++++++.+.++..+|
T Consensus 75 ---~~~~~~~~v~~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~~~~ 129 (294)
T PTZ00323 75 ---SPIQKNVGLCQPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEKAVG 129 (294)
T ss_pred ---CCceEEEEEECCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhhhhc
Confidence 0112588999996 688999999999999999999999999999999999887765
No 6
>PRK13981 NAD synthetase; Provisional
Probab=99.75 E-value=3.2e-17 Score=156.61 Aligned_cols=101 Identities=34% Similarity=0.367 Sum_probs=90.2
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCch
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTES 153 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~ 153 (223)
..++++.++++.||++|++++|.++++||||||+||+++|+|+ .++ ++.+
T Consensus 258 ~~~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la-------~~a--------------~g~~--------- 307 (540)
T PRK13981 258 EGEAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIA-------VDA--------------LGAE--------- 307 (540)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHH--------------hCcC---------
Confidence 3478999999999999999999999999999999999999886 554 2322
Q ss_pred HhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhh
Q 027416 154 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 210 (223)
Q Consensus 154 ~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~ 210 (223)
++++++||+.++++.+.++|+++|+.+|++|++++|+++++++.+.+...+
T Consensus 308 ------~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~ 358 (540)
T PRK13981 308 ------RVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEAALAPLF 358 (540)
T ss_pred ------cEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhh
Confidence 389999999999999999999999999999999999999999998877654
No 7
>PRK00768 nadE NAD synthetase; Reviewed
Probab=99.70 E-value=1.9e-16 Score=139.15 Aligned_cols=105 Identities=27% Similarity=0.289 Sum_probs=81.9
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchH
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESR 154 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~ 154 (223)
..++....+.+||++|++++|.+|+|||||||+||+++|+|| .+|+.+++. ++. .|.
T Consensus 17 ~~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~----~~A~~~~~~--------------~~~--~~~--- 73 (268)
T PRK00768 17 DPEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLA----QLAVEELRA--------------ETG--DDD--- 73 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH----HHHHHHhcc--------------ccc--Ccc---
Confidence 345566778899999999999999999999999999999885 444444221 000 000
Q ss_pred hhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCC-cEEEEechHHHHHHHHHhhH
Q 027416 155 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQT 208 (223)
Q Consensus 155 ~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~-~~~~i~I~~~v~~~~~~~~~ 208 (223)
..++++.||. ++..+.++|+.+|+.+|+ .|.+|+|+++++++.+.+..
T Consensus 74 ----~~~~~l~mP~--~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~~l~~ 122 (268)
T PRK00768 74 ----YQFIAVRLPY--GVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVAALEA 122 (268)
T ss_pred ----eeEEEEECCC--CCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHHHHhh
Confidence 2378899996 345688999999999999 89999999999999988764
No 8
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.67 E-value=9.7e-16 Score=133.12 Aligned_cols=98 Identities=46% Similarity=0.649 Sum_probs=85.9
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchH
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESR 154 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~ 154 (223)
.++++...+..||++|+++++.++++|+||||+||+++|+++ .+++ +.
T Consensus 2 ~~~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la-------~~~~--------------~~----------- 49 (248)
T cd00553 2 DLEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALA-------VRAL--------------GR----------- 49 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHH-------HHHh--------------Cc-----------
Confidence 467899999999999999999999999999999999999887 3331 11
Q ss_pred hhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhH
Q 027416 155 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 208 (223)
Q Consensus 155 ~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~ 208 (223)
..+++++|++..++..+.+.|+.+|+.+|++|++++|++.+..+...+..
T Consensus 50 ----~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~ 99 (248)
T cd00553 50 ----ENVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPAVEAFLALLGE 99 (248)
T ss_pred ----ccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHHHHHHHHHHhh
Confidence 13899999998888899999999999999999999999999998877654
No 9
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=99.66 E-value=9.1e-16 Score=134.85 Aligned_cols=105 Identities=30% Similarity=0.387 Sum_probs=88.2
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCch
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTES 153 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~ 153 (223)
..+++....+..||.+|+++++.+|+|||||||+|||++++|+ .++++.+. ..
T Consensus 3 ~d~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La-------~~A~~~~~----------~~---------- 55 (268)
T COG0171 3 IDLEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALA-------VRALGKGD----------SK---------- 55 (268)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHH-------HHHhcccc----------ch----------
Confidence 3578899999999999999999999999999999999999886 55543100 00
Q ss_pred HhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhh
Q 027416 154 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 210 (223)
Q Consensus 154 ~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~ 210 (223)
.++.++.||+.+.++.+.++|+.+++.+|+++.+++|.++|.+|...+.+.+
T Consensus 56 -----~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~ 107 (268)
T COG0171 56 -----ENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLKLF 107 (268)
T ss_pred -----hheeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhhhh
Confidence 2499999998764789999999999999999999999999999866555544
No 10
>PRK13980 NAD synthetase; Provisional
Probab=99.61 E-value=1.2e-14 Score=127.61 Aligned_cols=96 Identities=29% Similarity=0.371 Sum_probs=83.2
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchH
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESR 154 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~ 154 (223)
..+++...+..||++|++++|.++++|+||||+||+++++++ .+. ++..
T Consensus 9 ~~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~--------------~~~~---------- 57 (265)
T PRK13980 9 DYEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLA-------VKA--------------LGKE---------- 57 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHH--------------hCcc----------
Confidence 456788899999999999999999999999999999999886 333 2211
Q ss_pred hhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHh
Q 027416 155 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF 206 (223)
Q Consensus 155 ~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~ 206 (223)
.+++++|++..++..+.+.|+.+|+.+|++|+.++|+++++.+...+
T Consensus 58 -----~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~ 104 (265)
T PRK13980 58 -----NVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAI 104 (265)
T ss_pred -----ceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHc
Confidence 38999999888888999999999999999999999999998887654
No 11
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.47 E-value=5.9e-13 Score=120.24 Aligned_cols=93 Identities=26% Similarity=0.310 Sum_probs=80.1
Q ss_pred CHHHHHhhHHHHHHHHHHH-hCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCch
Q 027416 75 PEEEIAFGPGCWLWDYLRR-SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTES 153 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~-s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~ 153 (223)
..+++...+..||.+++++ .++++++|+||||+|||++|+++ .+++ +..
T Consensus 11 ~~~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa-------~~a~--------------g~~--------- 60 (326)
T PRK00876 11 DAAAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALC-------VRAL--------------GKE--------- 60 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH-------HHhh--------------CCC---------
Confidence 4567788899999999999 78899999999999999999886 3332 211
Q ss_pred HhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHH
Q 027416 154 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFL 203 (223)
Q Consensus 154 ~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~ 203 (223)
.+++++|+...++..+...|+.+|+.+|++|+.++|+++++++.
T Consensus 61 ------~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~~~~~~~~ 104 (326)
T PRK00876 61 ------RVYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEALG 104 (326)
T ss_pred ------cEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECchHHHHhh
Confidence 38999999877788999999999999999999999999999875
No 12
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.36 E-value=9.2e-12 Score=108.38 Aligned_cols=91 Identities=27% Similarity=0.391 Sum_probs=71.5
Q ss_pred HHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhh
Q 027416 77 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREF 156 (223)
Q Consensus 77 eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l 156 (223)
++....+..||.+++++++.++++||||||+||+++|+++ .+.+ +.
T Consensus 3 ~~~~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~-------~~~~--------------~~------------- 48 (250)
T TIGR00552 3 IKYVEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALC-------VEAL--------------GE------------- 48 (250)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHH-------HHhh--------------CC-------------
Confidence 3456677889999999999999999999999999998775 3321 10
Q ss_pred hcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHH
Q 027416 157 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFL 203 (223)
Q Consensus 157 ~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~ 203 (223)
..+...++++..++..+.+.|+++|+.+|++|+.++|++.+..+.
T Consensus 49 --~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~ 93 (250)
T TIGR00552 49 --QNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASFQ 93 (250)
T ss_pred --ceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHHHHHHH
Confidence 123444455555678899999999999999999999999888653
No 13
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.00 E-value=1.5e-09 Score=94.21 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEE
Q 027416 85 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 164 (223)
Q Consensus 85 ~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~ 164 (223)
..|..|++..+ +++|++|||+|||++|.++ .+++ | + ++.+|
T Consensus 8 ~~l~~~ik~~~--kv~vAfSGGvDSslLa~la-------~~~l--------------G-~---------------~v~Av 48 (269)
T COG1606 8 ERLKKAIKEKK--KVVVAFSGGVDSSLLAKLA-------KEAL--------------G-D---------------NVVAV 48 (269)
T ss_pred HHHHHHHhhcC--eEEEEecCCccHHHHHHHH-------HHHh--------------c-c---------------ceEEE
Confidence 34666777654 8999999999999998886 6663 3 2 37889
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 165 FMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 165 ~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
|.-++.......+.|+.+|+.||+.|..|+++.+-
T Consensus 49 Tv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~ 83 (269)
T COG1606 49 TVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD 83 (269)
T ss_pred EEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc
Confidence 99998999999999999999999999999987544
No 14
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.96 E-value=1.8e-09 Score=98.77 Aligned_cols=81 Identities=27% Similarity=0.364 Sum_probs=53.0
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCC-----
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS----- 171 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~s----- 171 (223)
++++||||||+|||++|+|+ .+ .|. .++++||-.-..
T Consensus 1 ~kV~vamSGGVDSsvaA~LL-------k~---------------~G~----------------~V~Gv~m~~~~~~~~~~ 42 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALL-------KE---------------QGY----------------DVIGVTMRNWDEEDESG 42 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHH-------HH---------------CT-----------------EEEEEEEE-SS-SSSHH
T ss_pred CeEEEEccCCHHHHHHHHHH-------Hh---------------hcc----------------cceEEEEEEeccccccC
Confidence 36899999999999999886 22 232 389999986443
Q ss_pred ----CHHHHHHHHHHHHHhCCcEEEEechHHHHH-HHHHhhH--hhCCCCC
Q 027416 172 ----SQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPR 215 (223)
Q Consensus 172 ----s~~t~~~A~~LA~~lG~~~~~i~I~~~v~~-~~~~~~~--~~g~~p~ 215 (223)
+..+.++|+++|+.||++|+.+|+.+.+.. .++-|-. .-|++|+
T Consensus 43 ~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TPN 93 (356)
T PF03054_consen 43 KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTPN 93 (356)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT----
T ss_pred CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 246789999999999999999999988773 3344444 3488775
No 15
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.6e-09 Score=95.52 Aligned_cols=84 Identities=26% Similarity=0.310 Sum_probs=63.0
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCC------
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE------ 169 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~------ 169 (223)
..++++++|||+|||++|+|+ .+ .+. .+.+++|-.-
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lL-------k~---------------QGy----------------eViGl~m~~~~~~~~~ 44 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLL-------KE---------------QGY----------------EVIGLFMKNWDEDGGG 44 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHH-------HH---------------cCC----------------eEEEEEEEeeccCCCC
Confidence 357999999999999999886 22 232 2788888742
Q ss_pred -CCCHHHHHHHHHHHHHhCCcEEEEechHHHHH-HHHHhhH--hhCCCCCce
Q 027416 170 -NSSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPRYK 217 (223)
Q Consensus 170 -~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~-~~~~~~~--~~g~~p~~~ 217 (223)
.++.++..+|+++|+.||++|+.+|+.+-+.. ....|-. ..|++|+=.
T Consensus 45 ~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~TPNPc 96 (356)
T COG0482 45 GCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTPNPC 96 (356)
T ss_pred cCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 25678899999999999999999999987775 2233333 348888643
No 16
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.90 E-value=1.4e-08 Score=88.47 Aligned_cols=75 Identities=31% Similarity=0.349 Sum_probs=60.0
Q ss_pred HHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEE
Q 027416 86 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 165 (223)
Q Consensus 86 ~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~ 165 (223)
.|.++|+.. ++++|++|||+||++++.++ .+ .+ . .+.+++
T Consensus 4 ~l~~~l~~~--~~vlVa~SGGvDSs~ll~la-------~~---------------~g-~---------------~v~av~ 43 (252)
T TIGR00268 4 NLRNFLKEF--KKVLIAYSGGVDSSLLAAVC-------SD---------------AG-T---------------EVLAIT 43 (252)
T ss_pred HHHHHHHhc--CCEEEEecCcHHHHHHHHHH-------HH---------------hC-C---------------CEEEEE
Confidence 466777774 67999999999999998775 22 11 1 278888
Q ss_pred ECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHH
Q 027416 166 MGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVS 200 (223)
Q Consensus 166 m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~ 200 (223)
+.+...+..+.+.|+++|+.+|++|+.+++++...
T Consensus 44 ~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~~~ 78 (252)
T TIGR00268 44 VVSPSISPRELEDAIIIAKEIGVNHEFVKIDKMIN 78 (252)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHHHH
Confidence 88766677889999999999999999999987543
No 17
>PLN02347 GMP synthetase
Probab=98.72 E-value=9.3e-08 Score=91.83 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHHHHHHHhC-CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEE
Q 027416 85 CWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYT 163 (223)
Q Consensus 85 ~~L~dylr~s~-~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t 163 (223)
.++.+.....+ .++++|+||||+||+++|+++ .+++ + + .+++
T Consensus 217 ~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~-------~~al--------------G-~---------------~v~a 259 (536)
T PLN02347 217 EQIELIKATVGPDEHVICALSGGVDSTVAATLV-------HKAI--------------G-D---------------RLHC 259 (536)
T ss_pred HHHHHHHHHhccCCeEEEEecCChhHHHHHHHH-------HHHh--------------C-C---------------cEEE
Confidence 34444444455 345999999999999999887 4442 2 2 3899
Q ss_pred EEECCCCCCHHHHHHH-HHHHHHhCCcEEEEechH
Q 027416 164 VFMGSENSSQETRMRA-KKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 164 ~~m~~~~ss~~t~~~A-~~LA~~lG~~~~~i~I~~ 197 (223)
+++.+...+..+...| +.+|+.+|++|..+|+++
T Consensus 260 v~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e 294 (536)
T PLN02347 260 VFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASE 294 (536)
T ss_pred EEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcH
Confidence 9999755554445555 889999999999999997
No 18
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.71 E-value=1e-07 Score=85.88 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEE
Q 027416 83 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFY 162 (223)
Q Consensus 83 ~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 162 (223)
....|.+++. .++++|++|||+||+++|.++ .++ ++ . .++
T Consensus 6 ~~~~l~~~v~---~~kVvValSGGVDSsvla~ll-------~~~--------------~G-~---------------~v~ 45 (311)
T TIGR00884 6 AVEEIREQVG---DAKVIIALSGGVDSSVAAVLA-------HRA--------------IG-D---------------RLT 45 (311)
T ss_pred HHHHHHHHhC---CCcEEEEecCChHHHHHHHHH-------HHH--------------hC-C---------------CEE
Confidence 3456666664 378999999999999998886 333 22 1 288
Q ss_pred EEEECCCCCCHHHHHHHHHH-HHHhCCcEEEEechHHH
Q 027416 163 TVFMGSENSSQETRMRAKKL-ADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 163 t~~m~~~~ss~~t~~~A~~L-A~~lG~~~~~i~I~~~v 199 (223)
++++........+.+.+.++ ++.+|++|+.+++++.+
T Consensus 46 av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~f 83 (311)
T TIGR00884 46 CVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERF 83 (311)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 99998755555667777665 55899999999998643
No 19
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.65 E-value=1.2e-07 Score=80.62 Aligned_cols=81 Identities=27% Similarity=0.300 Sum_probs=54.3
Q ss_pred HHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhc
Q 027416 79 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAK 158 (223)
Q Consensus 79 i~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 158 (223)
+-..+...+.++++ ....+.+.||||+||+++++++ .+. .+
T Consensus 2 ~r~~l~~av~~rl~--~~~~i~~~LSGGlDSs~i~~~~-------~~~--------------~~---------------- 42 (255)
T PF00733_consen 2 LRELLEEAVARRLR--SDKPIGILLSGGLDSSAIAALA-------ARQ--------------GG---------------- 42 (255)
T ss_dssp HHHHHHHHHHHHCG--CTSEEEEE--SSHHHHHHHHHH-------HHT--------------CC----------------
T ss_pred HHHHHHHHHHHHHh--cCCCEEEECCCChhHHHHHHHH-------HHh--------------hC----------------
Confidence 33344444444444 3467889999999999999886 211 11
Q ss_pred ceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHH
Q 027416 159 RIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 198 (223)
Q Consensus 159 ~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~ 198 (223)
..+.+++.........+...|+++|+.+|..|+.+++++.
T Consensus 43 ~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~ 82 (255)
T PF00733_consen 43 PPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPE 82 (255)
T ss_dssp SEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HH
T ss_pred CceeEEEEEcCCCcchhHHHHHHHhcccccccceeeechh
Confidence 2378888888777666999999999999999999988853
No 20
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.64 E-value=1.9e-07 Score=85.61 Aligned_cols=66 Identities=29% Similarity=0.333 Sum_probs=51.9
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCC--CCHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQE 174 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~--ss~~ 174 (223)
.+++|++|||+||+++|.++ .+ .+. .+++++|.... .+..
T Consensus 6 ~kVlValSGGVDSsvaa~LL-------~~---------------~G~----------------~V~~v~~~~~~~~~~~~ 47 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLL-------LE---------------AGY----------------EVTGVTFRFYEFNGSTE 47 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHH-------HH---------------cCC----------------eEEEEEEecCCCCCChH
Confidence 57999999999999998886 22 121 27888887532 2567
Q ss_pred HHHHHHHHHHHhCCcEEEEechHHHH
Q 027416 175 TRMRAKKLADEIGSWHLDVSIDTVVS 200 (223)
Q Consensus 175 t~~~A~~LA~~lG~~~~~i~I~~~v~ 200 (223)
+.++|+++|+.+|++|+.+|+++.+.
T Consensus 48 d~~~a~~va~~LgIp~~vvd~~~~f~ 73 (360)
T PRK14665 48 YLEDARALAERLGIGHITYDARKVFR 73 (360)
T ss_pred HHHHHHHHHHHhCCCEEEEecHHHHH
Confidence 78999999999999999999986654
No 21
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.59 E-value=2.6e-07 Score=88.33 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=59.7
Q ss_pred HHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhh
Q 027416 78 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFA 157 (223)
Q Consensus 78 Ei~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~ 157 (223)
.+......+|.++++. ++++|++|||+||+++|.++ .++ ++ .
T Consensus 200 ~~~~~~~~~l~~~v~~---~~vlva~SGGvDS~vll~ll-------~~~--------------lg-~------------- 241 (511)
T PRK00074 200 NFIEEAIEEIREQVGD---KKVILGLSGGVDSSVAAVLL-------HKA--------------IG-D------------- 241 (511)
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEeCCCccHHHHHHHH-------HHH--------------hC-C-------------
Confidence 3444455666666653 78999999999999998886 333 22 1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHH-HHHHhCCcEEEEechHH
Q 027416 158 KRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTV 198 (223)
Q Consensus 158 ~~~~~t~~m~~~~ss~~t~~~A~~-LA~~lG~~~~~i~I~~~ 198 (223)
.++++++.+......+.+.|.+ +|+.+|++|+.+++++.
T Consensus 242 --~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~ 281 (511)
T PRK00074 242 --QLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDR 281 (511)
T ss_pred --ceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHH
Confidence 2889999875444556677775 78999999999999864
No 22
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.58 E-value=2.2e-07 Score=77.76 Aligned_cols=63 Identities=27% Similarity=0.253 Sum_probs=49.6
Q ss_pred eEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHHH
Q 027416 99 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 178 (223)
Q Consensus 99 ~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~~ 178 (223)
++|++|||+||++++.++ .+. +.. .+.++++.....+..+.+.
T Consensus 1 vvva~SGG~DS~~ll~ll-------~~~---------------~~~---------------~v~~v~vd~g~~~~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAA-------VDA---------------LGD---------------RVLAVTATSPLFPRRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHH-------HHH---------------hCC---------------cEEEEEeCCCCCCHHHHHH
Confidence 589999999999988776 222 110 2677888765556789999
Q ss_pred HHHHHHHhCCcEEEEechHH
Q 027416 179 AKKLADEIGSWHLDVSIDTV 198 (223)
Q Consensus 179 A~~LA~~lG~~~~~i~I~~~ 198 (223)
|+++|+.+|++|+.+++++.
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~ 63 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDEL 63 (202)
T ss_pred HHHHHHHcCCcEEEEeCCcc
Confidence 99999999999999999843
No 23
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.57 E-value=4.7e-07 Score=83.79 Aligned_cols=92 Identities=26% Similarity=0.267 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhCCCCeEEe--ccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcce
Q 027416 83 PGCWLWDYLRRSGASGFLLP--LSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRI 160 (223)
Q Consensus 83 ~~~~L~dylr~s~~~g~vl~--LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 160 (223)
+-..|...++|.-+..+.+| ||||+|||++|.++.+--+++... .+ ..
T Consensus 210 ~r~~~~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~~--------------~~----------------~~ 259 (543)
T KOG0571|consen 210 LRHTLEKAVRKRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQAA--------------RG----------------SK 259 (543)
T ss_pred HHHHHHHHHHHHhhccCceeEEeeCCchHHHHHHHHHHHHHHhhhh--------------cC----------------CC
Confidence 55667777777777665554 999999999999982222111110 01 13
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEec--hHHHHHHHHHh
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI--DTVVSAFLSLF 206 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I--~~~v~~~~~~~ 206 (223)
++++..+.++| .++.+|+++|+.||+.|+++-+ ++-.+++.+.+
T Consensus 260 lhsFaIGle~S--PDL~aarkVAd~igt~Hhe~~ft~qegidal~eVI 305 (543)
T KOG0571|consen 260 LHSFAIGLEDS--PDLLAARKVADFIGTIHHEHTFTIQEGIDALDEVI 305 (543)
T ss_pred ceEEEecCCCC--hhHHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHh
Confidence 78899988877 6889999999999999977654 45555555443
No 24
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=98.56 E-value=1.1e-06 Score=84.76 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=67.4
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCe--EEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCc
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGF--LLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTE 152 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~--vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~ 152 (223)
+.++....+-..|.+-+++.-...+ .+-||||+|||++|+++.... .+... .......+-|
T Consensus 204 ~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~---~~~~~------------~~~~~~~~~~-- 266 (554)
T PRK09431 204 DNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYA---ARRIE------------DDERSEAWWP-- 266 (554)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHHhh---ccccc------------ccccccccCC--
Confidence 4556677777778888877655554 455999999999998872211 00000 0000000101
Q ss_pred hHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEech--HHHHHHHHHh
Q 027416 153 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAFLSLF 206 (223)
Q Consensus 153 ~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~--~~v~~~~~~~ 206 (223)
.++|++.+.+++ .+...|+++|+.+|..|+++.++ +..+.+.+.+
T Consensus 267 -------~l~tfsig~~~~--~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi 313 (554)
T PRK09431 267 -------QLHSFAVGLEGS--PDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVI 313 (554)
T ss_pred -------CceEEEEeCCCC--ChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHH
Confidence 277888887654 48899999999999999999885 4444444443
No 25
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.56 E-value=4.3e-07 Score=72.71 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=46.2
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
.++|++|||+||++++.++ .+. .+ . .+.++++.....+..+.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~-------~~~--------------~~-~---------------~v~~v~~~~g~~~~~~~~ 45 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLL-------KEK--------------YG-L---------------NPLAVTVDNGFNSEEAVK 45 (154)
T ss_pred CEEEECCCchhHHHHHHHH-------HHH--------------hC-C---------------ceEEEEeCCCCCCHHHHH
Confidence 6899999999999988776 222 11 0 156666665445677889
Q ss_pred HHHHHHHH-hCCcEEEEechHHHHHH
Q 027416 178 RAKKLADE-IGSWHLDVSIDTVVSAF 202 (223)
Q Consensus 178 ~A~~LA~~-lG~~~~~i~I~~~v~~~ 202 (223)
.++++|+. ++..+..+++++.....
T Consensus 46 ~~~~~a~~g~~~~~~~~~~~~~~~~~ 71 (154)
T cd01996 46 NIKNLIKKGLDLDHLVINPEEMKDLQ 71 (154)
T ss_pred HHHHHHHhCCCeEEEecCHHHHHHHH
Confidence 99999999 44445555555544433
No 26
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.56 E-value=2.6e-07 Score=79.25 Aligned_cols=66 Identities=27% Similarity=0.325 Sum_probs=50.8
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t 175 (223)
.++.+|-||||+||+++|+.+ .+. + . .++++++-.-.-...+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a-------~~~---------------~-~---------------ev~alsfdYGQrh~~E 43 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWA-------KKE---------------G-Y---------------EVHALTFDYGQRHRKE 43 (222)
T ss_pred CceEEEEccCChhHHHHHHHH-------Hhc---------------C-C---------------EEEEEEeeCCCCcHHH
Confidence 357899999999999998876 332 1 1 2666666544444899
Q ss_pred HHHHHHHHHHhCCcEEEEechHHH
Q 027416 176 RMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
.+.|+++|+.+|++|+.||++-.-
T Consensus 44 le~A~~iak~lgv~~~iid~~~~~ 67 (222)
T COG0603 44 LEAAKELAKKLGVPHHIIDVDLLG 67 (222)
T ss_pred HHHHHHHHHHcCCCeEEechhHHh
Confidence 999999999999999999998443
No 27
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.56 E-value=2.4e-07 Score=77.86 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=49.0
Q ss_pred eEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHHH
Q 027416 99 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 178 (223)
Q Consensus 99 ~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~~ 178 (223)
++|++|||+||++++.++ .+ .+. .+.++++........+.+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~-------~~---------------~g~----------------~v~~~~~~~~~~~~~e~~~ 42 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIA-------KD---------------EGY----------------EVHAITFDYGQRHSRELES 42 (201)
T ss_pred CEEEeccHHHHHHHHHHH-------HH---------------cCC----------------cEEEEEEECCCCCHHHHHH
Confidence 479999999999988765 21 111 2778888765556778899
Q ss_pred HHHHHHHhCCcEEEEechHH
Q 027416 179 AKKLADEIGSWHLDVSIDTV 198 (223)
Q Consensus 179 A~~LA~~lG~~~~~i~I~~~ 198 (223)
|+++|+.+|++|+.++++.+
T Consensus 43 a~~~a~~lgi~~~~~~~~~~ 62 (201)
T TIGR00364 43 ARKIAEALGIEHHVIDLSLL 62 (201)
T ss_pred HHHHHHHhCCCeEEEechhh
Confidence 99999999999999999853
No 28
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=98.56 E-value=6.4e-07 Score=87.40 Aligned_cols=88 Identities=20% Similarity=0.173 Sum_probs=64.0
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCCCeE--EeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCC
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGASGFL--LPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPT 151 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~g~v--l~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~ 151 (223)
.+.+|....+...|.+.+++.-...+. +.||||+||+++++++ .+. ...
T Consensus 234 ~~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~-------~~~---------------~~~------- 284 (628)
T TIGR03108 234 LSEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALM-------AGL---------------SDT------- 284 (628)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHH-------HHh---------------cCC-------
Confidence 456777777878888888775544444 4499999999988775 111 111
Q ss_pred chHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHH
Q 027416 152 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 198 (223)
Q Consensus 152 ~~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~ 198 (223)
.+.|++++...+...+...|+.+|+.+|.+|+++.+++.
T Consensus 285 --------~i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~ 323 (628)
T TIGR03108 285 --------PVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPD 323 (628)
T ss_pred --------CCcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHH
Confidence 156666666555567889999999999999999998843
No 29
>PRK00919 GMP synthase subunit B; Validated
Probab=98.55 E-value=5e-07 Score=81.26 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=62.7
Q ss_pred HHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhh
Q 027416 77 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREF 156 (223)
Q Consensus 77 eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l 156 (223)
+.+.......|.+.+.. ++++|++|||+||+++|.++ .++ ++ .
T Consensus 5 ~~~~~~~~~~l~~~~~~---~kVlVa~SGGVDSsvla~la-------~~~--------------lG-~------------ 47 (307)
T PRK00919 5 EKFIEEAIEEIREEIGD---GKAIIALSGGVDSSVAAVLA-------HRA--------------IG-D------------ 47 (307)
T ss_pred HHHHHHHHHHHHHHhCC---CCEEEEecCCHHHHHHHHHH-------HHH--------------hC-C------------
Confidence 44555566667776643 78999999999999999886 443 22 1
Q ss_pred hcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 157 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 157 ~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
.+++++.-+......+.+.|+++|+.+ ++|..+++++.+
T Consensus 48 ---~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~f 86 (307)
T PRK00919 48 ---RLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRF 86 (307)
T ss_pred ---eEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHH
Confidence 388888887655678999999999988 899999988633
No 30
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.55 E-value=2.5e-07 Score=80.10 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=50.5
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
++++|.+|||+||+++++++ .+. + + .++++++-+......+.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a-------~~~---------------~-~---------------~v~alt~dygq~~~~El 43 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQA-------LQQ---------------Y-D---------------EVHCVTFDYGQRHRAEI 43 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHH-------Hhc---------------C-C---------------eEEEEEEEeCCCCHHHH
Confidence 57899999999999988775 221 1 1 26777777655557899
Q ss_pred HHHHHHHHHhCCc-EEEEechHH
Q 027416 177 MRAKKLADEIGSW-HLDVSIDTV 198 (223)
Q Consensus 177 ~~A~~LA~~lG~~-~~~i~I~~~ 198 (223)
+.|+++|+.+|++ |+.|+++.+
T Consensus 44 ~~a~~ia~~~gi~~h~vid~~~l 66 (231)
T PRK11106 44 DVARELALKLGARAHKVLDVTLL 66 (231)
T ss_pred HHHHHHHHHcCCCeEEEEecccc
Confidence 9999999999996 999999954
No 31
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.54 E-value=5.5e-07 Score=82.02 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=52.2
Q ss_pred HHHHHhCC--CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEE
Q 027416 89 DYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM 166 (223)
Q Consensus 89 dylr~s~~--~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m 166 (223)
+.+|+.+. -+++||+|||+||+++|.++ .+.+ +. ..+++++
T Consensus 50 ~~~k~~~~~~yD~iV~lSGGkDSs~la~ll-------~~~~--------------gl----------------~~l~vt~ 92 (343)
T TIGR03573 50 DKIKKKGGGRYDCIIGVSGGKDSTYQAHVL-------KKKL--------------GL----------------NPLLVTV 92 (343)
T ss_pred HHHHhcCCCCCCEEEECCCCHHHHHHHHHH-------HHHh--------------CC----------------ceEEEEE
Confidence 44444433 46999999999999988665 3332 21 1455666
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 027416 167 GSENSSQETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 167 ~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
.....++...++++++++.+|++|+.+.++.
T Consensus 93 ~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~ 123 (343)
T TIGR03573 93 DPGWNTELGVKNLNNLIKKLGFDLHTITINP 123 (343)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeCCH
Confidence 5444567788899999999999999998873
No 32
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.52 E-value=7.2e-07 Score=81.64 Aligned_cols=64 Identities=27% Similarity=0.324 Sum_probs=49.5
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECC-------C-
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS-------E- 169 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~-------~- 169 (223)
+++|++|||+||+++|.++ .+ .+. .+++++|.. .
T Consensus 2 kVlValSGGvDSsv~a~lL-------~~---------------~G~----------------~V~~v~~~~~~~~~~~~~ 43 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLL-------KQ---------------QGY----------------EVVGVFMKNWEEDDKNDG 43 (352)
T ss_pred eEEEEEeCCHHHHHHHHHH-------HH---------------cCC----------------eEEEEEEEcccccccccc
Confidence 5899999999999998876 22 121 278888831 1
Q ss_pred --CCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 170 --NSSQETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 170 --~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
..+..+.+.|+++|+.+|++|+.+++++.+
T Consensus 44 ~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f 75 (352)
T TIGR00420 44 HGCTSAEDLRDAQAICEKLGIPLEKVNFQKEY 75 (352)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEEEECHHHH
Confidence 134678899999999999999999998655
No 33
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.49 E-value=8.2e-07 Score=81.57 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=49.2
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
++++|++|||+||+++|.++ . + .+. .+++++|... ..+.
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL-------~-~--------------~G~----------------eV~av~~~~~---~~e~ 44 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLML-------Q-E--------------QGY----------------EIVGVTMRVW---GDEP 44 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHH-------H-H--------------cCC----------------cEEEEEecCc---chhH
Confidence 68999999999999988764 1 1 121 2789999753 2445
Q ss_pred HHHHHHHHHhCCcEEEEechHHHH
Q 027416 177 MRAKKLADEIGSWHLDVSIDTVVS 200 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~~v~ 200 (223)
.+|+++|+.+|++|+.+|+++.+.
T Consensus 45 ~~a~~va~~LGI~~~vvd~~~~f~ 68 (362)
T PRK14664 45 QDARELAARMGIEHYVADERVPFK 68 (362)
T ss_pred HHHHHHHHHhCCCEEEEeChHHHH
Confidence 689999999999999999986554
No 34
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.47 E-value=6.3e-07 Score=83.13 Aligned_cols=70 Identities=27% Similarity=0.357 Sum_probs=54.7
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
++++|++|||+|||+++.++ .+ .+. .++++++-.......+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l-------~e---------------~G~----------------~Viavt~d~gq~~~~El 44 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYL-------QE---------------RGY----------------AVHTVFADTGGVDAEER 44 (400)
T ss_pred CcEEEEEcCChHHHHHHHHH-------HH---------------cCC----------------cEEEEEEEeCCCCHHHH
Confidence 57999999999999988775 22 121 27888887665557899
Q ss_pred HHHHHHHHHhCC-cEEEEechHHHH-HHHH
Q 027416 177 MRAKKLADEIGS-WHLDVSIDTVVS-AFLS 204 (223)
Q Consensus 177 ~~A~~LA~~lG~-~~~~i~I~~~v~-~~~~ 204 (223)
+.|+++|+.+|+ +|+.+|+++.+. .+..
T Consensus 45 ~~a~~~A~~lG~~~~~viD~~eef~e~vi~ 74 (400)
T PRK04527 45 DFIEKRAAELGAASHVTVDGGPAIWEGFVK 74 (400)
T ss_pred HHHHHHHHHcCCCeEEEecCHHHHHHHHHH
Confidence 999999999999 599999997665 3443
No 35
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.46 E-value=7.3e-07 Score=79.81 Aligned_cols=63 Identities=25% Similarity=0.321 Sum_probs=50.6
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
+++|++|||+||+++|.++ .+++ + . .++++++-+......+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll-------~~~l--------------G-~---------------~v~aV~vd~g~~~~~E~~ 43 (295)
T cd01997 1 KVILALSGGVDSTVAAVLL-------HKAI--------------G-D---------------RLTCVFVDNGLLRKNEAE 43 (295)
T ss_pred CEEEEEcCChHHHHHHHHH-------HHHh--------------C-C---------------cEEEEEecCCCCChHHHH
Confidence 4789999999999999886 3332 2 1 278899887655577889
Q ss_pred HHHHHHHHhCC-cEEEEechH
Q 027416 178 RAKKLADEIGS-WHLDVSIDT 197 (223)
Q Consensus 178 ~A~~LA~~lG~-~~~~i~I~~ 197 (223)
.++++|+.+|. +|+.+++++
T Consensus 44 ~~~~~~~~~g~i~~~vvd~~e 64 (295)
T cd01997 44 RVEELFSKLLGINLIVVDASE 64 (295)
T ss_pred HHHHHHHHhCCCcEEEEcCcH
Confidence 99999999997 999999985
No 36
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.45 E-value=7e-07 Score=77.33 Aligned_cols=64 Identities=28% Similarity=0.293 Sum_probs=45.1
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
..+.+.||||+||+++++++ .+. +.. .+.+++.........+.
T Consensus 16 ~~v~~~LSGGlDSs~va~~~-------~~~---------------~~~---------------~~~~~~~~~~~~~~~e~ 58 (269)
T cd01991 16 VPVGVLLSGGLDSSLVAALA-------ARL---------------LPE---------------PVKTFSIGFGFEGSDER 58 (269)
T ss_pred CceEEeecccHHHHHHHHHH-------HHh---------------hCC---------------CCceEEEeeCCCCCChH
Confidence 46788899999999998876 221 111 03334443333344568
Q ss_pred HHHHHHHHHhCCcEEEEechH
Q 027416 177 MRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~ 197 (223)
..|+.+|+.+|++|+.++++.
T Consensus 59 ~~a~~~a~~l~~~~~~~~~~~ 79 (269)
T cd01991 59 EYARRVAEHLGTEHHEVEFTP 79 (269)
T ss_pred HHHHHHHHHhCCcceEEEcCH
Confidence 999999999999999999874
No 37
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.45 E-value=6.7e-07 Score=76.22 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=46.4
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
+.+|.+|||+||+++++++ .+. + ..+++++.-.......+.+
T Consensus 1 Kavvl~SGG~DSt~~l~~~-------~~~---------------~----------------~~v~al~~~YGq~~~~El~ 42 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWA-------KKE---------------G----------------YEVYALTFDYGQRHRRELE 42 (209)
T ss_dssp EEEEE--SSHHHHHHHHHH-------HHH--------------------------------SEEEEEEEESSSTTCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHc---------------C----------------CeEEEEEEECCCCCHHHHH
Confidence 3689999999999998775 222 1 1266666665445778999
Q ss_pred HHHHHHHHhCC-cEEEEechHHHH
Q 027416 178 RAKKLADEIGS-WHLDVSIDTVVS 200 (223)
Q Consensus 178 ~A~~LA~~lG~-~~~~i~I~~~v~ 200 (223)
.|+++|+.+|+ +|+.|+++.+-+
T Consensus 43 ~a~~i~~~l~v~~~~~i~l~~~~~ 66 (209)
T PF06508_consen 43 AAKKIAKKLGVKEHEVIDLSFLKE 66 (209)
T ss_dssp HHHHHHHHCT-SEEEEEE-CHHHH
T ss_pred HHHHHHHHhCCCCCEEeeHHHHHh
Confidence 99999999999 999999995443
No 38
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.44 E-value=1.9e-06 Score=81.26 Aligned_cols=88 Identities=31% Similarity=0.306 Sum_probs=61.0
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCC--CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCC
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPT 151 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~--g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~ 151 (223)
...+|....+...|.+.+++.-.. .+.+.||||+||+++++++ .+. ...
T Consensus 229 ~~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a-------~~~---------------~~~------- 279 (467)
T TIGR01536 229 DSEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIA-------RRE---------------APR------- 279 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHH-------HHh---------------cCC-------
Confidence 346677777777787877766444 4566699999999998876 211 100
Q ss_pred chHhhhcceEEEEEECCCC-CCHHHHHHHHHHHHHhCCcEEEEechH
Q 027416 152 ESREFAKRIFYTVFMGSEN-SSQETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 152 ~~~~l~~~~~~t~~m~~~~-ss~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
..+.+++....+ ....+...|+++|+.+|++|+++++++
T Consensus 280 -------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~ 319 (467)
T TIGR01536 280 -------GPVHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSV 319 (467)
T ss_pred -------CCceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCH
Confidence 015556655542 334567799999999999999999963
No 39
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=98.44 E-value=1.5e-06 Score=84.40 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=61.5
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCC--CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCC
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPT 151 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~--g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~ 151 (223)
...+|....+..-|.+-+++.-.. .+.+.||||+||+++++++ .+ .+..
T Consensus 236 ~~~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~-------~~---------------~~~~------- 286 (589)
T TIGR03104 236 RTEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLL-------AE---------------AGVD------- 286 (589)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHH-------HH---------------hcCC-------
Confidence 345666666666777777665444 4556699999999998775 11 1111
Q ss_pred chHhhhcceEEEEEECCCCCC---HHHHHHHHHHHHHhCCcEEEEechH
Q 027416 152 ESREFAKRIFYTVFMGSENSS---QETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 152 ~~~~l~~~~~~t~~m~~~~ss---~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
.+.|++++...+. .++...|+++|+.+|..|+++.+++
T Consensus 287 --------~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~ 327 (589)
T TIGR03104 287 --------GLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPN 327 (589)
T ss_pred --------CceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCH
Confidence 2677777765442 4688999999999999999999863
No 40
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=1.5e-06 Score=77.67 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=59.3
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECC-------
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS------- 168 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~------- 168 (223)
...++|++|||+|||++|.|. ..+ +. .++++||--
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll-------~~~---------------g~----------------~v~gv~M~nWd~~de~ 46 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLL-------AAR---------------GY----------------NVTGVFMKNWDSLDEF 46 (377)
T ss_pred cceEEEEecCCchHHHHHHHH-------Hhc---------------CC----------------CeeEEeeecccccccc
Confidence 467999999999999998886 221 21 378999962
Q ss_pred --CCCCHHHHHHHHHHHHHhCCcEEEEechHHH-HHHHHH-hhH-hhCCCCCcee
Q 027416 169 --ENSSQETRMRAKKLADEIGSWHLDVSIDTVV-SAFLSL-FQT-LTGKRPRYKV 218 (223)
Q Consensus 169 --~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v-~~~~~~-~~~-~~g~~p~~~~ 218 (223)
...-+.+..+|+.+|+.|+++++.++....+ ...++. ++. .-|++|+=++
T Consensus 47 ~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~L~~Y~~G~TPNPDI 101 (377)
T KOG2805|consen 47 GSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPFLEEYENGRTPNPDI 101 (377)
T ss_pred ccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 2234788999999999999999999986332 122222 111 2488887543
No 41
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=98.43 E-value=2.1e-06 Score=83.25 Aligned_cols=98 Identities=22% Similarity=0.187 Sum_probs=60.2
Q ss_pred HHhhHHHHHHHHHHHhCCC--CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhh
Q 027416 79 IAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREF 156 (223)
Q Consensus 79 i~~~~~~~L~dylr~s~~~--g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l 156 (223)
....+-.-|.+-+++.-.. .+.+.||||+|||++|+++ .+.++. -. ....+.
T Consensus 206 ~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSlIaala-------~~~~~~-----------~~-~~~~~~------- 259 (578)
T PLN02549 206 DPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASIA-------ARHLAE-----------TK-AARQWG------- 259 (578)
T ss_pred HHHHHHHHHHHHHHHHhccCCceeEeecCCccHHHHHHHH-------HHhhhh-----------cc-cccccC-------
Confidence 3444555566666665444 3566699999999999887 222110 00 000000
Q ss_pred hcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEech--HHHHHHHHHh
Q 027416 157 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAFLSLF 206 (223)
Q Consensus 157 ~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~--~~v~~~~~~~ 206 (223)
..+.|++.+..++ .+...|+++|+.+|..|+++.++ +..+.+.+.+
T Consensus 260 --~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i 307 (578)
T PLN02549 260 --QQLHSFCVGLEGS--PDLKAAREVADYLGTVHHEFHFTVQEGIDAIEDVI 307 (578)
T ss_pred --CCceEEecCCCCC--CHHHHHHHHHHHhCCCCeEEEEChHHHHHHHHHHH
Confidence 1277888877654 57889999999999999998775 3344443333
No 42
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.43 E-value=1e-06 Score=80.46 Aligned_cols=64 Identities=33% Similarity=0.441 Sum_probs=49.0
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCC-------
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN------- 170 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~------- 170 (223)
.++|++|||+||+++|.++ . + .+. .+++++|....
T Consensus 1 kVlValSGGvDSsvla~lL-------~-~--------------~g~----------------~v~~v~i~~~~~~~~~~~ 42 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALL-------K-E--------------QGY----------------EVIGVFMKNWDEDDGKGG 42 (349)
T ss_pred CEEEEecCCHHHHHHHHHH-------H-H--------------cCC----------------cEEEEEEecccccccccC
Confidence 3789999999999988775 2 1 121 27778875431
Q ss_pred -CCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 171 -SSQETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 171 -ss~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
.+..+.+.|+++|+.+|++|+.+++++.+
T Consensus 43 ~~s~~d~~~a~~va~~lgI~~~vvd~~~~f 72 (349)
T cd01998 43 CCSEEDLKDARRVADQLGIPHYVVNFEKEY 72 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEECcHHH
Confidence 35678899999999999999999998644
No 43
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.40 E-value=1.3e-06 Score=79.82 Aligned_cols=65 Identities=31% Similarity=0.391 Sum_probs=49.7
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCC-------
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN------- 170 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~------- 170 (223)
+++|++|||+||+++|.++ . + .+. .+.+++|....
T Consensus 2 kVlValSGGvDSsvla~lL-------~-~--------------~G~----------------~V~~v~~~~~~~~~~~~~ 43 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALL-------K-E--------------QGY----------------EVIGVFMKLWDDDDETGK 43 (346)
T ss_pred eEEEEecCCHHHHHHHHHH-------H-H--------------cCC----------------cEEEEEEeCCCccccccc
Confidence 6899999999999988775 2 1 121 26777776421
Q ss_pred ---CCHHHHHHHHHHHHHhCCcEEEEechHHHH
Q 027416 171 ---SSQETRMRAKKLADEIGSWHLDVSIDTVVS 200 (223)
Q Consensus 171 ---ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~ 200 (223)
.+..+.+.|+++|+.+|++|+.+++.+.+.
T Consensus 44 ~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~ 76 (346)
T PRK00143 44 GGCCAEEDIADARRVADKLGIPHYVVDFEKEFW 76 (346)
T ss_pred CCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHH
Confidence 246788999999999999999999976543
No 44
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=98.37 E-value=2.8e-06 Score=82.59 Aligned_cols=103 Identities=28% Similarity=0.245 Sum_probs=63.8
Q ss_pred HHHHHhhHHHHHHHHHHHhCCC--CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCch
Q 027416 76 EEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTES 153 (223)
Q Consensus 76 ~eEi~~~~~~~L~dylr~s~~~--g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~ 153 (223)
.++....+-..|.+.+++.-.. .+.+.||||+|||++|+++.... +.+. .... ..+.
T Consensus 215 ~~~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~-------~~~~---------~~~~-~~~~---- 273 (586)
T PTZ00077 215 GEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLI-------KNGE---------IDLS-KRGM---- 273 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHHHhh-------cccc---------cccc-cccC----
Confidence 3444555556666666665444 45666999999999998872221 1000 0000 0000
Q ss_pred HhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEech--HHHHHHHHHh
Q 027416 154 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAFLSLF 206 (223)
Q Consensus 154 ~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~--~~v~~~~~~~ 206 (223)
..++|++.+.+++ .+...|+++|+.+|..|+++.++ +..+.+.+.+
T Consensus 274 -----~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~i 321 (586)
T PTZ00077 274 -----PKLHSFCIGLEGS--PDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDVI 321 (586)
T ss_pred -----CCceEEEcCCCCC--chHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHHH
Confidence 1278888887654 57899999999999999888764 4445444443
No 45
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.32 E-value=3.9e-06 Score=78.00 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=50.0
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t 175 (223)
..+++|++|||+||++++.++ .+. ++. .++++++-.... .+
T Consensus 2 ~~kVvva~SGGlDSsvla~~l-------~e~--------------lG~----------------eViavt~d~Gq~--~d 42 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWL-------KET--------------YGC----------------EVIAFTADVGQG--EE 42 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHH-------HHh--------------hCC----------------eEEEEEEecCCH--HH
Confidence 357999999999999988775 332 221 278888876433 68
Q ss_pred HHHHHHHHHHhCC-cEEEEechHHH
Q 027416 176 RMRAKKLADEIGS-WHLDVSIDTVV 199 (223)
Q Consensus 176 ~~~A~~LA~~lG~-~~~~i~I~~~v 199 (223)
.+.|+++|+.+|+ .|+.+|+.+.+
T Consensus 43 le~a~~~A~~lGi~~~~viD~~~ef 67 (399)
T PRK00509 43 LEPIREKALKSGASEIYVEDLREEF 67 (399)
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHH
Confidence 9999999999998 57777998555
No 46
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.31 E-value=2.5e-06 Score=79.16 Aligned_cols=67 Identities=24% Similarity=0.240 Sum_probs=50.2
Q ss_pred eEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECC-CCCCHHHHH
Q 027416 99 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS-ENSSQETRM 177 (223)
Q Consensus 99 ~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~-~~ss~~t~~ 177 (223)
+++++|||+||+++|.++ .+. + ..+.++++.+ .+.++.+..
T Consensus 179 vvvllSGGiDS~vaa~l~-------~k~---------------G----------------~~v~av~~~~~~~~~~~~~~ 220 (394)
T PRK01565 179 ALLLLSGGIDSPVAGYLA-------MKR---------------G----------------VEIEAVHFHSPPYTSERAKE 220 (394)
T ss_pred EEEEECCChhHHHHHHHH-------HHC---------------C----------------CEEEEEEEeCCCCCcHHHHH
Confidence 555699999999998775 221 1 1267777754 356678889
Q ss_pred HHHHHHHHhC-----CcEEEEechHHHHHHH
Q 027416 178 RAKKLADEIG-----SWHLDVSIDTVVSAFL 203 (223)
Q Consensus 178 ~A~~LA~~lG-----~~~~~i~I~~~v~~~~ 203 (223)
.++++|+.++ ++|+.+++++..+.+.
T Consensus 221 ~~~~~a~~l~~~~~~i~~~vv~~~~~~~~i~ 251 (394)
T PRK01565 221 KVIDLARILAKYGGRIKLHVVPFTEIQEEIK 251 (394)
T ss_pred HHHHHHHHHHHhcCCCcEEEEECHHHHHHHh
Confidence 9999999995 9999999998765444
No 47
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.31 E-value=2.6e-06 Score=79.03 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=52.7
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t 175 (223)
.++++|++|||+||++++.++ .+. ++.+ .++++++... ....+
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL-------~e~--------------~g~~---------------~Viav~vd~g-~~~~e 44 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLL-------KEK--------------YGYD---------------EVITVTVDVG-QPEEE 44 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHH-------HHh--------------cCCC---------------EEEEEEEECC-CChHH
Confidence 368999999999999988775 222 2211 2788888763 33568
Q ss_pred HHHHHHHHHHhCCcEEEEechH-HHHHH
Q 027416 176 RMRAKKLADEIGSWHLDVSIDT-VVSAF 202 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~-~v~~~ 202 (223)
.+.|+++|+.+|++|+.+|+++ ..+.+
T Consensus 45 ~~~a~~~a~~lGi~~~vvd~~eef~~~~ 72 (394)
T PRK13820 45 IKEAEEKAKKLGDKHYTIDAKEEFAKDY 72 (394)
T ss_pred HHHHHHHHHHcCCCEEEEeCHHHHHHHH
Confidence 8899999999999999999995 44333
No 48
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.29 E-value=3.5e-06 Score=68.81 Aligned_cols=70 Identities=21% Similarity=0.146 Sum_probs=49.7
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCC--CCCHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE--NSSQET 175 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~--~ss~~t 175 (223)
+++|++|||.||++++.++ .+..+. .+.+ -.++++++... ..+..+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l-------~~~~~~-----------~~~~--------------~~~~~~~~d~~~~~~~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVL-------KKLQRR-----------YPYG--------------FELEALTVDEGIPGYRDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHhh-----------cCCC--------------eEEEEEEEECCCCCCcHHH
Confidence 4789999999999988776 221000 1000 12677777643 245788
Q ss_pred HHHHHHHHHHhCCcEEEEechHHH
Q 027416 176 RMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
...++++|+.+|+.+..+++++.+
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhc
Confidence 899999999999999999997543
No 49
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.28 E-value=7.2e-06 Score=79.07 Aligned_cols=86 Identities=29% Similarity=0.317 Sum_probs=64.5
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeEEe--ccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCc
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFLLP--LSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTE 152 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~--LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~ 152 (223)
..++....+...|.+.+++.....+.+| ||||+|||++|+++ .+. .. .
T Consensus 207 ~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a-------~~~--------------~~-~-------- 256 (542)
T COG0367 207 SADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIA-------AEE--------------LG-K-------- 256 (542)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHH-------HHh--------------cc-c--------
Confidence 4667788888888888888775555555 89999999999887 222 11 0
Q ss_pred hHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEech
Q 027416 153 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 153 ~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
...++++.+.+++...+...|+++|+.||.+|+.+.+.
T Consensus 257 ------~~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~ 294 (542)
T COG0367 257 ------EGKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILT 294 (542)
T ss_pred ------cceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeec
Confidence 01235777776776679999999999999999888776
No 50
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.28 E-value=2.6e-06 Score=71.82 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=42.0
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCC------
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS------ 171 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~s------ 171 (223)
++++++|||.||++++.++ .+. |. .+.++++-....
T Consensus 1 kv~v~~SGGkDS~~al~~a-------~~~---G~----------------------------~v~~l~~~~~~~~~~~~~ 42 (194)
T cd01994 1 KVVALISGGKDSCYALYRA-------LEE---GH----------------------------EVVALLNLTPEEGSSMMY 42 (194)
T ss_pred CEEEEecCCHHHHHHHHHH-------HHc---CC----------------------------EEEEEEEEecCCCCcccc
Confidence 4789999999999988775 221 11 133333332211
Q ss_pred CHHHHHHHHHHHHHhCCcEEEEechH
Q 027416 172 SQETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 172 s~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
.....+.++++|+.+|++|+.++++.
T Consensus 43 h~~~~e~~~~~A~~lgipl~~i~~~~ 68 (194)
T cd01994 43 HTVNHELLELQAEAMGIPLIRIEISG 68 (194)
T ss_pred cccCHHHHHHHHHHcCCcEEEEeCCC
Confidence 12367899999999999999998753
No 51
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.22 E-value=6.5e-06 Score=68.02 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=47.6
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCC--CCHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQET 175 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~--ss~~t 175 (223)
.++|++|||.||++++.++ .+..+. .+. .+.++++.... .+..+
T Consensus 1 ~v~va~SGG~DS~~ll~ll-------~~~~~~-----------~~~----------------~v~~v~vd~g~~~~~~~~ 46 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLL-------LKLQPK-----------LKI----------------RLIAAHVDHGLRPESDEE 46 (189)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHHH-----------cCC----------------CEEEEEeCCCCChhHHHH
Confidence 4789999999999988776 221100 110 26777776433 34668
Q ss_pred HHHHHHHHHHhCCcEEEEechH
Q 027416 176 RMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
.+.++.+|+.+|++++.++++.
T Consensus 47 ~~~~~~~~~~~gi~~~~~~~~~ 68 (189)
T TIGR02432 47 AEFVQQFCKKLNIPLEIKKVDV 68 (189)
T ss_pred HHHHHHHHHHcCCCEEEEEecc
Confidence 8999999999999999998864
No 52
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.16 E-value=9.7e-06 Score=64.52 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=51.9
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
.++|++|||.||++++.++ .+. ... . ..+..+++.+....+++.+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~-------~~~---------------~~~--~-----------~~~~~v~~dtg~~~~~~~~ 45 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLA-------LKA---------------LPE--L-----------KPVPVIFLDTGYEFPETYE 45 (173)
T ss_pred CeEEEecCChHHHHHHHHH-------HHh---------------ccc--c-----------cCceEEEeCCCCCCHHHHH
Confidence 3789999999999998886 222 100 0 0267788887666789999
Q ss_pred HHHHHHHHhCCcEEEEechHHHH
Q 027416 178 RAKKLADEIGSWHLDVSIDTVVS 200 (223)
Q Consensus 178 ~A~~LA~~lG~~~~~i~I~~~v~ 200 (223)
.++++++.+|.++..+..+....
T Consensus 46 ~~~~~~~~~g~~~~~~~~~~~~~ 68 (173)
T cd01713 46 FVDRVAERYGLPLVVVRPPDSPA 68 (173)
T ss_pred HHHHHHHHhCCCeEEECCCccHH
Confidence 99999999999999998876544
No 53
>PRK14561 hypothetical protein; Provisional
Probab=98.12 E-value=8.4e-06 Score=68.59 Aligned_cols=60 Identities=25% Similarity=0.248 Sum_probs=43.3
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
+++|++|||+||++++.++ .. . .+ -...++..+. ..+.+
T Consensus 2 kV~ValSGG~DSslll~~l--------~~--------------~-~~--------------v~a~t~~~g~----~~e~~ 40 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILL--------ER--------------F-YD--------------VELVTVNFGV----LDSWK 40 (194)
T ss_pred EEEEEEechHHHHHHHHHH--------Hh--------------c-CC--------------eEEEEEecCc----hhHHH
Confidence 3789999999999987654 11 1 00 0134454443 34688
Q ss_pred HHHHHHHHhCCcEEEEechHH
Q 027416 178 RAKKLADEIGSWHLDVSIDTV 198 (223)
Q Consensus 178 ~A~~LA~~lG~~~~~i~I~~~ 198 (223)
.|+.+|+.+|++|+.+++++.
T Consensus 41 ~a~~~a~~lGi~~~~v~~~~~ 61 (194)
T PRK14561 41 HAREAAKALGFPHRVLELDRE 61 (194)
T ss_pred HHHHHHHHhCCCEEEEECCHH
Confidence 999999999999999999863
No 54
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.09 E-value=1.4e-05 Score=74.52 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=48.7
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
++++|++|||+||++++.++ .+. ++. .++++++-... ...+.
T Consensus 6 ~kVvva~SGGlDSsvla~~L-------~e~--------------~G~----------------eViav~id~Gq-~~~el 47 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWL-------REN--------------YGC----------------EVVCFTADVGQ-GIEEL 47 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHH-------HHh--------------hCC----------------eEEEEEEECCC-ChHHH
Confidence 58999999999999988775 222 121 27888887643 45689
Q ss_pred HHHHHHHHHhCCcE-EEEechHHH
Q 027416 177 MRAKKLADEIGSWH-LDVSIDTVV 199 (223)
Q Consensus 177 ~~A~~LA~~lG~~~-~~i~I~~~v 199 (223)
+.|+++|+.+|++| +.+|..+.+
T Consensus 48 ~~a~~~A~~lGi~~~~v~dl~~ef 71 (404)
T PLN00200 48 EGLEAKAKASGAKQLVVKDLREEF 71 (404)
T ss_pred HHHHHHHHHcCCCEEEEEeCHHHH
Confidence 99999999999985 777766543
No 55
>PRK08576 hypothetical protein; Provisional
Probab=98.07 E-value=2.7e-05 Score=73.25 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=58.1
Q ss_pred HHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhh
Q 027416 77 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREF 156 (223)
Q Consensus 77 eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l 156 (223)
.++......-..+.+++.+..+++|++|||.||++++.++ .+. .+
T Consensus 215 ~~~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La-------~k~--------------~~-------------- 259 (438)
T PRK08576 215 REVLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLA-------KKA--------------FG-------------- 259 (438)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHH-------HHh--------------CC--------------
Confidence 3445555555556667766568999999999999988765 222 11
Q ss_pred hcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEE
Q 027416 157 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLD 192 (223)
Q Consensus 157 ~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~ 192 (223)
.+.++++-+....+.|.+.++++++.+|++++.
T Consensus 260 ---~V~aV~iDTG~e~pet~e~~~~lae~LGI~lii 292 (438)
T PRK08576 260 ---DVTAVYVDTGYEMPLTDEYVEKVAEKLGVDLIR 292 (438)
T ss_pred ---CCEEEEeCCCCCChHHHHHHHHHHHHcCCCEEE
Confidence 166778877666688999999999999999987
No 56
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.06 E-value=1.5e-05 Score=74.06 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=49.0
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
+++|++|||+||++++.++ .+. + ..++++++-.. ....+.+
T Consensus 1 kVvla~SGGlDSsvll~~l-------~e~---------------g----------------~~V~av~id~G-q~~~e~~ 41 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWL-------REK---------------G----------------YEVIAYTADVG-QPEEDID 41 (394)
T ss_pred CEEEEEcCCHHHHHHHHHH-------HHc---------------C----------------CEEEEEEEecC-CChHHHH
Confidence 4789999999999988765 221 1 12778887653 3367899
Q ss_pred HHHHHHHHhCC-cEEEEechH-HHHH
Q 027416 178 RAKKLADEIGS-WHLDVSIDT-VVSA 201 (223)
Q Consensus 178 ~A~~LA~~lG~-~~~~i~I~~-~v~~ 201 (223)
.++++|+.+|+ +|+.+|+++ .++.
T Consensus 42 ~a~~~a~~lGi~~~~viD~~~ef~~~ 67 (394)
T TIGR00032 42 AIPEKALEYGAENHYTIDAREEFVKD 67 (394)
T ss_pred HHHHHHHHhCCCeEEEEeCHHHHHHh
Confidence 99999999998 799999974 4343
No 57
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.02 E-value=1.8e-05 Score=73.36 Aligned_cols=64 Identities=22% Similarity=0.271 Sum_probs=47.1
Q ss_pred eEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHHH
Q 027416 99 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 178 (223)
Q Consensus 99 ~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~~ 178 (223)
++|++|||+||++++.++ .+. .+ . .++++++-.... ....+.
T Consensus 1 Vvva~SGGlDSsvll~~l-------~e~--------------~~-~---------------eV~av~~d~Gq~-~~~~e~ 42 (385)
T cd01999 1 VVLAYSGGLDTSVILKWL-------KEK--------------GG-Y---------------EVIAVTADVGQP-EEEIEA 42 (385)
T ss_pred CEEEecCCHHHHHHHHHH-------HHh--------------CC-C---------------eEEEEEEECCCc-chhHHH
Confidence 589999999999988775 222 11 1 277887776433 334589
Q ss_pred HHHHHHHhCCc-EEEEechHHHH
Q 027416 179 AKKLADEIGSW-HLDVSIDTVVS 200 (223)
Q Consensus 179 A~~LA~~lG~~-~~~i~I~~~v~ 200 (223)
|+++|+.+|+. |+.+|+++.+.
T Consensus 43 a~~~a~~lG~~~~~viD~~~ef~ 65 (385)
T cd01999 43 IEEKALKLGAKKHVVVDLREEFV 65 (385)
T ss_pred HHHHHHHcCCCEEEEeccHHHHH
Confidence 99999999996 99999987444
No 58
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.01 E-value=3.1e-05 Score=63.46 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=45.3
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCC--CHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS--SQET 175 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~s--s~~t 175 (223)
.++|++|||.||++++.++ .+... ..+ -.+.++++..... +..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~-------~~~~~-----------~~~----------------~~v~~v~id~~~~~~~~~~ 46 (185)
T cd01992 1 KILVAVSGGPDSMALLHLL-------SELKP-----------RLG----------------LRLVAVHVDHGLRPESDEE 46 (185)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHH-----------HcC----------------CcEEEEEecCCCCchHHHH
Confidence 4789999999999988776 22100 011 1277888876433 3588
Q ss_pred HHHHHHHHHHhCCcEEEE
Q 027416 176 RMRAKKLADEIGSWHLDV 193 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i 193 (223)
.+.++++|+.+|++++.+
T Consensus 47 ~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 47 AAFVADLCAKLGIPLYIL 64 (185)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 999999999999999887
No 59
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.91 E-value=4e-05 Score=63.33 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=40.6
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEE--ECCCCCCHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF--MGSENSSQET 175 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~--m~~~~ss~~t 175 (223)
+++||+|||.||++.+.++ .+.... .+ ..+.+++ .+....+...
T Consensus 1 ki~va~SGG~DS~~Ll~~l-------~~~~~~-----------~~----------------~~~~~~~vdh~~~~~s~~~ 46 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLL-------KELRRR-----------NG----------------IKLIAVHVDHGLREESDEE 46 (182)
T ss_dssp EEEEE--SSHHHHHHHHHH-------HHHHTT-----------TT----------------TEEEEEEEE-STSCCHHHH
T ss_pred CEEEEEcCCHHHHHHHHHH-------HHHHHh-----------cC----------------CCeEEEEEecCCCcccchh
Confidence 4789999999999877665 211000 11 0244444 4444556777
Q ss_pred HHHHHHHHHHhCCcEEEEechH
Q 027416 176 RMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
....+++|+.+|++++..+++.
T Consensus 47 ~~~v~~~~~~~~i~~~~~~~~~ 68 (182)
T PF01171_consen 47 AEFVEEICEQLGIPLYIVRIDE 68 (182)
T ss_dssp HHHHHHHHHHTT-EEEEEE--C
T ss_pred HHHHHHHHHhcCCceEEEEeee
Confidence 8889999999999999988884
No 60
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=97.89 E-value=0.00011 Score=59.68 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=41.6
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
+++|++|||+||++++.++ .+ .+. .+.++++.....+..+.+
T Consensus 1 kvlv~~SGG~DS~~~~~~~-------~~---------------~~~----------------~v~~~~~~~~~~~~~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWA-------KK---------------EGY----------------EVHALSFDYGQRHAKEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHH-------HH---------------cCC----------------cEEEEEEECCCCChhHHH
Confidence 4789999999999988775 21 111 156666664333445668
Q ss_pred HHHHHHHHhCCcEEEEechHH
Q 027416 178 RAKKLADEIGSWHLDVSIDTV 198 (223)
Q Consensus 178 ~A~~LA~~lG~~~~~i~I~~~ 198 (223)
.++++++.+| ++..++....
T Consensus 43 ~~~~~~~~~g-~~~~~~~~~~ 62 (169)
T cd01995 43 AAKLIAEKLG-PSTYVPARNL 62 (169)
T ss_pred HHHHHHHHHC-CCEEEeCcCH
Confidence 8999999999 5555555543
No 61
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=97.89 E-value=7.3e-05 Score=68.89 Aligned_cols=67 Identities=25% Similarity=0.315 Sum_probs=49.2
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCC-CCCHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-NSSQETR 176 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~-~ss~~t~ 176 (223)
++++++|||+||++++.++ .+. +. .++++++.+. ..+..+.
T Consensus 174 kvlvllSGGiDS~vaa~ll-------~kr---------------G~----------------~V~av~~~~~~~~~~~~~ 215 (371)
T TIGR00342 174 KVLALLSGGIDSPVAAFMM-------MKR---------------GC----------------RVVAVHFFNEPAASEKAR 215 (371)
T ss_pred eEEEEecCCchHHHHHHHH-------HHc---------------CC----------------eEEEEEEeCCCCccHHHH
Confidence 4778899999999988775 221 21 2777777754 3456888
Q ss_pred HHHHHHHHHhC-----CcEEEEechHHHHHH
Q 027416 177 MRAKKLADEIG-----SWHLDVSIDTVVSAF 202 (223)
Q Consensus 177 ~~A~~LA~~lG-----~~~~~i~I~~~v~~~ 202 (223)
..|+.+|+.++ +.++.+|+.+....+
T Consensus 216 ~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i 246 (371)
T TIGR00342 216 EKVERLANSLNETGGSVKLYVFDFTDVQEEI 246 (371)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeCHHHHHHH
Confidence 89999999883 478888888876544
No 62
>PRK13795 hypothetical protein; Provisional
Probab=97.84 E-value=0.00014 Score=71.40 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=59.5
Q ss_pred HHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhc
Q 027416 79 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAK 158 (223)
Q Consensus 79 i~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 158 (223)
+......+|..++.+. -..++|++|||.||++++.|+ .++ ..
T Consensus 227 ~~~~ai~~Ir~~~~~~-~~~v~Va~SGGKDS~vll~L~-------~~a--------------~~---------------- 268 (636)
T PRK13795 227 KEKEAVNFIRGVAEKY-NLPVSVSFSGGKDSLVVLDLA-------REA--------------LK---------------- 268 (636)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEEecCcHHHHHHHHHH-------HHh--------------CC----------------
Confidence 3344445555555444 357999999999999998886 322 11
Q ss_pred ceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 159 RIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 159 ~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
.+..++.-+....++|.+.++++++.+|+++..++.++.+
T Consensus 269 -~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~~f 308 (636)
T PRK13795 269 -DFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGDAF 308 (636)
T ss_pred -CcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccHhH
Confidence 1566777776667899999999999999999998876443
No 63
>PRK08349 hypothetical protein; Validated
Probab=97.78 E-value=0.00017 Score=60.54 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.8
Q ss_pred CeEEeccCCchHHHHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIV 116 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv 116 (223)
++++++|||.||+++|.++
T Consensus 2 ~~vvllSGG~DS~v~~~~l 20 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLM 20 (198)
T ss_pred cEEEEccCChhHHHHHHHH
Confidence 5789999999999988775
No 64
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.77 E-value=0.00013 Score=62.45 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEech
Q 027416 174 ETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 174 ~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
...+.|+.+|+.+|++|+.++++
T Consensus 43 ~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 43 PNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CCHHHHHHHHHHhCCCEEEEECC
Confidence 46789999999999999999997
No 65
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=97.75 E-value=0.00012 Score=63.99 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=43.3
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t 175 (223)
-..++|++|||.||++++.++..+. +. .+.. -.+.+++.-....+ .+
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~----~~--------------~~~~--------------~~l~av~vd~g~~~-~~ 75 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQ----KR--------------APIN--------------FELVAVNLDQKQPG-FP 75 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHH----Hh--------------CCCC--------------eEEEEEEecCCCCC-CC
Confidence 3479999999999999877752211 11 0000 02666665432222 23
Q ss_pred HHHHHHHHHHhCCcEEEEech
Q 027416 176 RMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~ 196 (223)
.+.++++|+.+|++|+.++++
T Consensus 76 ~~~~~~~~~~lgI~~~v~~~~ 96 (258)
T PRK10696 76 EHVLPEYLESLGVPYHIEEQD 96 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEec
Confidence 346789999999999988875
No 66
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=97.73 E-value=0.00011 Score=60.35 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=16.8
Q ss_pred CeEEeccCCchHHHHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIV 116 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv 116 (223)
.++|++|||+||++++.++
T Consensus 1 ~vlv~~SGG~DS~~la~ll 19 (177)
T cd01712 1 KALALLSGGIDSPVAAWLL 19 (177)
T ss_pred CEEEEecCChhHHHHHHHH
Confidence 4789999999999998776
No 67
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.62 E-value=0.00024 Score=65.83 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=37.9
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
.+++++|||+||++++.++ .+. |. .+.++++- .++...+
T Consensus 182 kvlvllSGGiDSpVAa~ll-------~kr---------------G~----------------~V~~v~f~---~g~~~~e 220 (381)
T PRK08384 182 KVVALLSGGIDSPVAAFLM-------MKR---------------GV----------------EVIPVHIY---MGEKTLE 220 (381)
T ss_pred cEEEEEeCChHHHHHHHHH-------HHc---------------CC----------------eEEEEEEE---eCHHHHH
Confidence 4777799999999998886 221 21 26677773 3467899
Q ss_pred HHHHHHHHhCCc
Q 027416 178 RAKKLADEIGSW 189 (223)
Q Consensus 178 ~A~~LA~~lG~~ 189 (223)
.++++|+.||.+
T Consensus 221 ~v~~la~~L~~~ 232 (381)
T PRK08384 221 KVRKIWNQLKKY 232 (381)
T ss_pred HHHHHHHHhccc
Confidence 999999999944
No 68
>PRK13794 hypothetical protein; Provisional
Probab=97.58 E-value=0.00095 Score=63.61 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEE
Q 027416 85 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 164 (223)
Q Consensus 85 ~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~ 164 (223)
..|...+.+.+ ..++|++|||.||++++.|+ .++ ++. .+..+
T Consensus 237 ~~i~~~~~~~~-~~v~vs~SGGKDS~v~L~L~-------~~~--------------~~~----------------~~~vv 278 (479)
T PRK13794 237 GFIRNTAEKIN-KPVTVAYSGGKDSLATLLLA-------LKA--------------LGI----------------NFPVL 278 (479)
T ss_pred HHHHHHHHhcC-CCEEEEecchHHHHHHHHHH-------HHH--------------hCC----------------CeEEE
Confidence 33444333332 57999999999999988776 333 111 26778
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCcEEEEech
Q 027416 165 FMGSENSSQETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 165 ~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
|+-+....++|.+.++++++.+|+++..+..+
T Consensus 279 fiDTG~efpet~e~i~~~~~~~gl~i~~~~~~ 310 (479)
T PRK13794 279 FNDTGLEFPETLENVEDVEKHYGLEIIRTKSE 310 (479)
T ss_pred EEECCCCChHHHHHHHHHHHhcCCcEEEEchH
Confidence 88776667899999999999999999888665
No 69
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.55 E-value=0.00093 Score=60.10 Aligned_cols=67 Identities=18% Similarity=0.020 Sum_probs=49.6
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
.+++|++|||.||++++.|+ .+++. ..+ ..+..++.-+...-++|.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La-------~ka~~--------------~~~-------------~~~~vl~iDTG~~FpEt~ 73 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLA-------RKAFY--------------PGK-------------LPFPLLHVDTGWKFPEMI 73 (301)
T ss_pred CCEEEEecCCHHHHHHHHHH-------HHhhc--------------ccC-------------CCeeEEEEeCCCCCHHHH
Confidence 68999999999999998886 33311 000 015566666655568999
Q ss_pred HHHHHHHHHhCCcEEEEechH
Q 027416 177 MRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~ 197 (223)
+.+.++|+.+|+++..+..++
T Consensus 74 ef~d~~a~~~gl~l~v~~~~~ 94 (301)
T PRK05253 74 EFRDRRAKELGLELIVHSNPE 94 (301)
T ss_pred HHHHHHHHHhCCCEEEEeChH
Confidence 999999999999998886654
No 70
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.00042 Score=61.41 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=46.1
Q ss_pred hCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCH
Q 027416 94 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQ 173 (223)
Q Consensus 94 s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~ 173 (223)
-|...++++||||+|||++|+|+ .+++| + .++|++.-.---..
T Consensus 19 vg~~kvi~alSGGVDSsv~a~L~-------~~AiG---------------d---------------~l~cvfVD~GLlR~ 61 (315)
T COG0519 19 VGDGKVILALSGGVDSSVAAVLA-------HRAIG---------------D---------------QLTCVFVDHGLLRK 61 (315)
T ss_pred hCCceEEEEecCCCcHHHHHHHH-------HHHhh---------------c---------------ceEEEEecCCcccC
Confidence 45678999999999999999997 66633 1 38888887533333
Q ss_pred HHHHHH-HHHHHHhCCcEEEEechH
Q 027416 174 ETRMRA-KKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 174 ~t~~~A-~~LA~~lG~~~~~i~I~~ 197 (223)
.+.+.. ..+.+.+|++...+|-.+
T Consensus 62 ~E~e~V~~~f~~~~~~nl~~VdA~~ 86 (315)
T COG0519 62 GEAEQVVEMFREHLGLNLIVVDAKD 86 (315)
T ss_pred CcHHHHHHHHHhhcCCceEEEchHH
Confidence 333333 345666888888777553
No 71
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=97.50 E-value=0.00085 Score=53.94 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=46.5
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
.++|++|||-||++++.|+ .+. ... +..++.-+....++|.+
T Consensus 1 ~i~vs~SGGKDS~v~l~l~-------~~~---------------~~~----------------~~vv~~dtg~e~p~t~~ 42 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLA-------REA---------------GRK----------------VPVVFIDTGYEFPETYE 42 (174)
T ss_dssp SEEEE--SSHHHHHHHHHH-------HHH---------------HTT----------------CEEEEEE-STB-HHHHH
T ss_pred CeEEEecCCHHHHHHHHHH-------HHh---------------cCC----------------CcEEEEecCccCHHHHH
Confidence 4789999999999998886 332 110 24556666567789999
Q ss_pred HHHHHHHHhCCcEEEEechHHHHHH
Q 027416 178 RAKKLADEIGSWHLDVSIDTVVSAF 202 (223)
Q Consensus 178 ~A~~LA~~lG~~~~~i~I~~~v~~~ 202 (223)
.++.+++.+|++...+.........
T Consensus 43 ~~~~~~~~~~~~i~~~~~~~~~~~~ 67 (174)
T PF01507_consen 43 FVDELAKRYGIPIIVYRPPETFEQR 67 (174)
T ss_dssp HHHHHHHHTTCEEEEEETTSHHHHH
T ss_pred HHHHHHhhhhhhhhhcccccchhhc
Confidence 9999999999997777776554433
No 72
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.49 E-value=0.00046 Score=64.94 Aligned_cols=76 Identities=12% Similarity=0.109 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEE
Q 027416 86 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 165 (223)
Q Consensus 86 ~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~ 165 (223)
.|...++. -..++||+|||.||++.+.++..+ .... .+ -.+.+++
T Consensus 7 ~l~~~l~~--~~~ilvavSGG~DS~~Ll~~l~~~---~~~~--------------~~----------------~~l~a~h 51 (436)
T PRK10660 7 TLNRQLLT--SRQILVAFSGGLDSTVLLHLLVQW---RTEN--------------PG----------------VTLRAIH 51 (436)
T ss_pred HHHHhcCC--CCeEEEEecCCHHHHHHHHHHHHH---HHhc--------------CC----------------CeEEEEE
Confidence 34444443 267999999999999877665111 0000 01 1266666
Q ss_pred ECC--CCCCHHHHHHHHHHHHHhCCcEEEEech
Q 027416 166 MGS--ENSSQETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 166 m~~--~~ss~~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
.-. ...+....+.++.+|+.+|++|+.++++
T Consensus 52 vnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 52 VHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred EeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 653 2335566678999999999999988776
No 73
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00031 Score=61.87 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=46.7
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEE--CCCCCCHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM--GSENSSQE 174 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m--~~~~ss~~ 174 (223)
.+++||+|||-||++++.++ . . +... . .+.+++. +....+..
T Consensus 22 ~~ilVavSGGkDS~~ll~~L-------~-~--------------l~~~------------~--~~~a~~Vd~~~~~~~~~ 65 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLL-------K-E--------------LGRR------------I--EVEAVHVDHGLRGYSDQ 65 (298)
T ss_pred CeEEEEeCCChHHHHHHHHH-------H-H--------------hccC------------c--eEEEEEecCCCCCccch
Confidence 68999999999999988776 2 2 1100 0 1444444 33333478
Q ss_pred HHHHHHHHHHHhCCcEEEEechHHH
Q 027416 175 TRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 175 t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
....++.+|+.+|+++...+++...
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~~~~~~ 90 (298)
T COG0037 66 EAELVEKLCEKLGIPLIVERVTDDL 90 (298)
T ss_pred HHHHHHHHHHHhCCceEEEEEEeec
Confidence 8889999999999988888776433
No 74
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.40 E-value=0.00021 Score=60.54 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=46.1
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEEC-CCCCCHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG-SENSSQETR 176 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~-~~~ss~~t~ 176 (223)
++++-||||+||.+++.++ .+ .| ..+.++++- .+.++....
T Consensus 5 k~l~LlSGGiDSpVAa~lm-------~k---------------rG----------------~~V~~l~f~~~~~~~~~~~ 46 (197)
T PF02568_consen 5 KALALLSGGIDSPVAAWLM-------MK---------------RG----------------CEVIALHFDSPPFTGEKAR 46 (197)
T ss_dssp EEEEE-SSCCHHHHHHHHH-------HC---------------BT-----------------EEEEEEEE-TTTSSCCCH
T ss_pred eEEEEecCCccHHHHHHHH-------HH---------------CC----------------CEEEEEEEECCCCCCHHHH
Confidence 4667799999999988776 22 12 126777775 344555666
Q ss_pred HHHHHHHHHh-------CCcEEEEechHHHHHHHHHh
Q 027416 177 MRAKKLADEI-------GSWHLDVSIDTVVSAFLSLF 206 (223)
Q Consensus 177 ~~A~~LA~~l-------G~~~~~i~I~~~v~~~~~~~ 206 (223)
+.++++++.+ ..+++.+|+.+....+....
T Consensus 47 ~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 47 EKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp HHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 6666666665 35778888888777665443
No 75
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=97.36 E-value=0.0013 Score=57.02 Aligned_cols=73 Identities=18% Similarity=0.075 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEE
Q 027416 86 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 165 (223)
Q Consensus 86 ~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~ 165 (223)
.|...+.+.+ ..++|++|||-||++++.|+ .+ .+. .+..++
T Consensus 31 ~i~~a~~~~~-~~i~vs~SGGKDS~vlL~L~-------~~---------------~~~----------------~i~vvf 71 (241)
T PRK02090 31 RLAWALENFG-GRLALVSSFGAEDAVLLHLV-------AQ---------------VDP----------------DIPVIF 71 (241)
T ss_pred HHHHHHHHcC-CCEEEEecCCHHHHHHHHHH-------Hh---------------cCC----------------CCcEEE
Confidence 3444445434 45999999999999998876 21 110 266788
Q ss_pred ECCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 027416 166 MGSENSSQETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 166 m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
+-+....++|.+.++++++.+|.+++.+..+.
T Consensus 72 iDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~ 103 (241)
T PRK02090 72 LDTGYLFPETYRFIDELTERLLLNLKVYRPDA 103 (241)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 87766779999999999999999999887764
No 76
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.26 E-value=0.00078 Score=62.50 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=43.0
Q ss_pred EEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHHHH
Q 027416 100 LLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRA 179 (223)
Q Consensus 100 vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~~A 179 (223)
||++|||+|||+++... .++ +. ..++|++.-.- .+.++.+.+
T Consensus 1 VLAySGGLDTS~~l~~L-------~e~---------------~~---------------~~Via~~aDlG-q~~~d~~~i 42 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWL-------KEE---------------GG---------------YEVIAVTADLG-QPDEDLEAI 42 (388)
T ss_dssp EEE--SSHHHHHHHHHH-------HHT---------------TT---------------EEEEEEEEESS-ST-S-HHHH
T ss_pred CeeeCCChHHHHHHHHH-------Hhh---------------cC---------------ceEEEEEEECC-CcHHHHHHH
Confidence 78999999999987654 221 10 13788877653 345789999
Q ss_pred HHHHHHhCC-cEEEEechHHHH-HH
Q 027416 180 KKLADEIGS-WHLDVSIDTVVS-AF 202 (223)
Q Consensus 180 ~~LA~~lG~-~~~~i~I~~~v~-~~ 202 (223)
++-|..+|+ +|+.+|..+.+- .+
T Consensus 43 ~~kA~~~Ga~~~~vvD~r~ef~~~~ 67 (388)
T PF00764_consen 43 EEKALKLGASKHIVVDARDEFAEDY 67 (388)
T ss_dssp HHHHHHHT-SEEEEEE-HHHHHHHT
T ss_pred HHHHHhcCCceeeecchHHHHHHHH
Confidence 999999998 999999985443 44
No 77
>PRK08557 hypothetical protein; Provisional
Probab=97.24 E-value=0.004 Score=58.42 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=55.1
Q ss_pred HHhhHHHHHHHHHHHhCCC--CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhh
Q 027416 79 IAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREF 156 (223)
Q Consensus 79 i~~~~~~~L~dylr~s~~~--g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l 156 (223)
+.......|...+++.+.+ .+++++|||.||++++.|+ .+. ..
T Consensus 162 ~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~-------~~~---------------~~------------- 206 (417)
T PRK08557 162 LEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLA-------KEV---------------IP------------- 206 (417)
T ss_pred HHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHH-------HHh---------------CC-------------
Confidence 3333444555555555443 4678999999999987765 221 11
Q ss_pred hcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEech
Q 027416 157 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 157 ~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
.+..++.-+....++|.+..+++++.+|.++..+.-+
T Consensus 207 ---~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 207 ---DLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred ---CCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 1455666665556899999999999999999888754
No 78
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0019 Score=59.61 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=51.8
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t 175 (223)
.+++||+.|||+|+|++.... .+. .+. .++|++.-- +.+.++
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL-------~e~--------------~~~----------------eVia~tadv-GQ~eed 45 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWL-------KEK--------------GGA----------------EVIAVTADV-GQPEED 45 (403)
T ss_pred CcEEEEEecCCccHHHHHHHH-------HHh--------------cCc----------------eEEEEEEeC-CCChHH
Confidence 478999999999999987664 222 111 277777764 233799
Q ss_pred HHHHHHHHHHhCCc-EEEEechHHH-HHHH
Q 027416 176 RMRAKKLADEIGSW-HLDVSIDTVV-SAFL 203 (223)
Q Consensus 176 ~~~A~~LA~~lG~~-~~~i~I~~~v-~~~~ 203 (223)
.+.+++=|..+|+. |+.+|..+.+ +.|.
T Consensus 46 ~~~i~eKA~~~Ga~~~~viD~reeF~~~yi 75 (403)
T COG0137 46 LDAIREKALELGAEEAYVIDAREEFVEDYI 75 (403)
T ss_pred hHHHHHHHHHhCCceEEEeecHHHHHHHHH
Confidence 99999999999998 9999988543 3443
No 79
>PRK05370 argininosuccinate synthase; Validated
Probab=97.10 E-value=0.0024 Score=60.04 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=51.4
Q ss_pred CCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHH
Q 027416 95 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 174 (223)
Q Consensus 95 ~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~ 174 (223)
+-++++|+.|||+|||+++... .++ + ..++|++.-.-....+
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL-------~e~---------------~----------------~eVia~~aDvGQ~~~e 51 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWM-------RQK---------------G----------------AVPYAYTANLGQPDED 51 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHH-------Hhc---------------C----------------CeEEEEEEECCCCCcc
Confidence 3468999999999999987553 111 1 1267776654222246
Q ss_pred HHHHHHHHHHHhCC-cEEEEech-HHHHHHHHHh
Q 027416 175 TRMRAKKLADEIGS-WHLDVSID-TVVSAFLSLF 206 (223)
Q Consensus 175 t~~~A~~LA~~lG~-~~~~i~I~-~~v~~~~~~~ 206 (223)
+.+.+++-|..+|+ .|+.+|.. +.++.+...+
T Consensus 52 d~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI 85 (447)
T PRK05370 52 DYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAI 85 (447)
T ss_pred chHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHH
Confidence 78899999999999 69999998 4455565433
No 80
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.08 E-value=0.0016 Score=48.75 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=15.7
Q ss_pred eEEeccCCchHHHHHHHH
Q 027416 99 FLLPLSGGADSSSVAAIV 116 (223)
Q Consensus 99 ~vl~LSGG~DSs~~a~lv 116 (223)
++|++|||+||++++.++
T Consensus 1 v~v~~SGG~DS~~ll~~l 18 (103)
T cd01986 1 VLVAFSGGKDSSVAAALL 18 (103)
T ss_pred CEEEEeCcHHHHHHHHHH
Confidence 579999999999988775
No 81
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0032 Score=51.92 Aligned_cols=58 Identities=29% Similarity=0.324 Sum_probs=45.2
Q ss_pred eEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHHH
Q 027416 99 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 178 (223)
Q Consensus 99 ~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~~ 178 (223)
+-+-+|||-|||++|.+. +. +|.+ | .+.||..+-- .+...
T Consensus 3 v~vLfSGGKDSSLaA~iL--------~k--------------lgye-----v---------~LVTvnFGv~----d~~k~ 42 (198)
T COG2117 3 VYVLFSGGKDSSLAALIL--------DK--------------LGYE-----V---------ELVTVNFGVL----DSWKY 42 (198)
T ss_pred eEEEecCCCchhHHHHHH--------HH--------------hCCC-----c---------EEEEEEeccc----cchhh
Confidence 456799999999988774 33 4433 2 3788888753 55788
Q ss_pred HHHHHHHhCCcEEEEech
Q 027416 179 AKKLADEIGSWHLDVSID 196 (223)
Q Consensus 179 A~~LA~~lG~~~~~i~I~ 196 (223)
|++-|+.+|-+|..+.++
T Consensus 43 A~~tA~~lgF~h~vl~Ld 60 (198)
T COG2117 43 ARETAAILGFPHEVLQLD 60 (198)
T ss_pred HHHHHHHhCCCcceeccC
Confidence 999999999999999998
No 82
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=96.96 E-value=0.0018 Score=61.62 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=40.7
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECC--CCCCHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS--ENSSQET 175 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~--~~ss~~t 175 (223)
.+++.||||+||++++.++ .+. +. .+.++++-. ..+....
T Consensus 179 k~lvllSGGiDS~va~~~~-------~kr---------------G~----------------~v~~l~f~~g~~~~~~~~ 220 (482)
T PRK01269 179 DVLSLISGGFDSGVASYML-------MRR---------------GS----------------RVHYCFFNLGGAAHEIGV 220 (482)
T ss_pred eEEEEEcCCchHHHHHHHH-------HHc---------------CC----------------EEEEEEEecCCchhHHHH
Confidence 3566699999999988775 221 11 255555542 2222236
Q ss_pred HHHHHHHHHHhC----CcEEEEechHHHH
Q 027416 176 RMRAKKLADEIG----SWHLDVSIDTVVS 200 (223)
Q Consensus 176 ~~~A~~LA~~lG----~~~~~i~I~~~v~ 200 (223)
++.|+.+++.++ ++++.+++.+...
T Consensus 221 ~~~a~~l~~~~~~~~~~~l~~v~~~~~~~ 249 (482)
T PRK01269 221 KQVAHYLWNRYGSSHRVRFISVDFEPVVG 249 (482)
T ss_pred HHHHHHHHHHhCccCCceEEEEecHHHHH
Confidence 778888888776 3466777666554
No 83
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=96.95 E-value=0.0036 Score=54.02 Aligned_cols=35 Identities=6% Similarity=-0.054 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhH
Q 027416 174 ETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 208 (223)
Q Consensus 174 ~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~ 208 (223)
...+.++..|+++|++++.+.+....+.....+..
T Consensus 45 ~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~ 79 (222)
T TIGR00289 45 PNLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAG 79 (222)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHH
Confidence 45678899999999999988876544444444433
No 84
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.0093 Score=56.13 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=19.9
Q ss_pred CCCCeEEeccCCchHHHHHHHH
Q 027416 95 GASGFLLPLSGGADSSSVAAIV 116 (223)
Q Consensus 95 ~~~g~vl~LSGG~DSs~~a~lv 116 (223)
|..++++.+|||+|||+|++|+
T Consensus 229 G~~~Vl~~vSGgvdStV~a~Ll 250 (552)
T KOG1622|consen 229 GDYKVLVAVSGGVDSTVCAALL 250 (552)
T ss_pred cccceEEEecCCchHHHHHHHH
Confidence 4579999999999999999997
No 85
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=96.52 E-value=0.023 Score=47.97 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=47.9
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
.+++++.|||.||++++-|+ .+. .. .+..+|+-+...-++|.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~-------~~~---------------~~----------------~~~v~f~DTg~efpeT~ 55 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLV-------SKI---------------SP----------------DIPVIFLDTGYHFPETY 55 (212)
T ss_pred CCEEEEecCCHHHHHHHHHH-------Hhc---------------CC----------------CCcEEEecCCCCCHHHH
Confidence 47999999999999988776 221 11 14567888877889999
Q ss_pred HHHHHHHHHhCCcEEEEech
Q 027416 177 MRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~ 196 (223)
+...++++.+|.+...+.-+
T Consensus 56 efv~~~~~~~~l~i~~~~~~ 75 (212)
T TIGR00434 56 ELIDELTERYPLNIKVYKPD 75 (212)
T ss_pred HHHHHHHHHhCCceEEECCc
Confidence 99999999999876666544
No 86
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=96.38 E-value=0.052 Score=48.77 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=49.1
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
.+.++++|||-||++++.|+ .+++.. +. ..+..++.-+...-.+|.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa-------~kaf~~------------~~---------------~p~~vl~IDTG~~F~Et~ 65 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLA-------RKAFYP------------GP---------------LPFPLLHVDTGWKFREMI 65 (294)
T ss_pred CCcEEEEecChHHHHHHHHH-------HHHhcc------------cC---------------CCeEEEEEecCCCCHHHH
Confidence 34678899999999998886 333110 00 016677777765567899
Q ss_pred HHHHHHHHHhCCcEEEEechH
Q 027416 177 MRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~ 197 (223)
+...++|+.+|.++......+
T Consensus 66 efrd~~a~~~gl~l~v~~~~~ 86 (294)
T TIGR02039 66 AFRDHMVAKYGLRLIVHSNEE 86 (294)
T ss_pred HHHHHHHHHhCCCEEEEechh
Confidence 999999999999998876654
No 87
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=96.31 E-value=0.041 Score=47.39 Aligned_cols=57 Identities=9% Similarity=0.055 Sum_probs=44.0
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t 175 (223)
...++++.|||.||++++-|+ .+. ... .+-.+|.-|...-++|
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~-------~~~--------------~~~----------------~i~vv~vDTg~~fpET 67 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLL-------SSI--------------SEP----------------MIPVIFIDTLYHFPQT 67 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHH-------HHh--------------hCC----------------CCCEEEEeCCCCCHHH
Confidence 457999999999999988886 222 100 1556778777778999
Q ss_pred HHHHHHHHHHhCCc
Q 027416 176 RMRAKKLADEIGSW 189 (223)
Q Consensus 176 ~~~A~~LA~~lG~~ 189 (223)
++.+.++++.+|..
T Consensus 68 ~e~~d~~~~~~~~~ 81 (226)
T TIGR02057 68 LTLKDELTKKYYQT 81 (226)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999999943
No 88
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=96.29 E-value=0.0039 Score=53.50 Aligned_cols=77 Identities=25% Similarity=0.184 Sum_probs=46.9
Q ss_pred HHHhhHHHHHHHHHH------HhCCC--CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCC
Q 027416 78 EIAFGPGCWLWDYLR------RSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEF 149 (223)
Q Consensus 78 Ei~~~~~~~L~dylr------~s~~~--g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~ 149 (223)
|....+-..|..+|. +.+.. .++|++|||.|||+++.++ +. ++.. ..
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iil--------R~--------------~g~~---v~ 88 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIIL--------RW--------------AGFT---VD 88 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHH--------Hh--------------hcee---ec
Confidence 445555555554442 22333 6899999999999988775 21 1100 00
Q ss_pred CCchHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEec
Q 027416 150 PTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI 195 (223)
Q Consensus 150 p~~~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I 195 (223)
| .+..| ++.-+.++..++.-+|..+.-+.+
T Consensus 89 p-----------~t~~L-----p~~ir~n~~~l~~~lg~~p~yvee 118 (255)
T COG1365 89 P-----------GTAIL-----PDHIRRNKEELETLLGEVPEYVEE 118 (255)
T ss_pred c-----------ccccC-----CHHHhHHHHHHHHHHccCHHHHHH
Confidence 0 12333 357888999999999988754443
No 89
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.22 E-value=0.079 Score=47.99 Aligned_cols=66 Identities=18% Similarity=0.083 Sum_probs=49.4
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
...+++.|||.||++++.|+ .+++.. .. + .+-.++.-|...-++|.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa-------~kaf~~-----------~~-------~---------~~pvl~VDTG~~FpEt~ 83 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLA-------MKAFRP-----------TR-------P---------PFPLLHVDTTWKFREMI 83 (312)
T ss_pred CCcEEEecCChHHHHHHHHH-------HHhhcc-----------cC-------C---------CeeEEEeCCCCCCHHHH
Confidence 56789999999999998886 332110 00 0 16678888877778999
Q ss_pred HHHHHHHHHhCCcEEEEech
Q 027416 177 MRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~ 196 (223)
+...++++.+|+++....-.
T Consensus 84 efrD~~a~~~gl~Liv~~~~ 103 (312)
T PRK12563 84 DFRDRRAKELGLDLVVHHNP 103 (312)
T ss_pred HHHHHHHHHhCCcEEEecCh
Confidence 99999999999998776433
No 90
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=95.82 E-value=0.046 Score=50.76 Aligned_cols=94 Identities=24% Similarity=0.285 Sum_probs=63.5
Q ss_pred CHHHHHhhHHHHHHHHH----------------------------HHhCCCCeEEe--------ccCCchHHHHHHHHHH
Q 027416 75 PEEEIAFGPGCWLWDYL----------------------------RRSGASGFLLP--------LSGGADSSSVAAIVGC 118 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dyl----------------------------r~s~~~g~vl~--------LSGG~DSs~~a~lv~~ 118 (223)
..-|+-+.+...||++. +.-|..|+.|| ||||+||-+++.++
T Consensus 118 ~S~ev~~~vG~~i~~~~~~~~Vdl~~Pdv~i~iEIr~~~ayi~~~~~~G~GGLPvGt~Gk~l~LlSGGIDSPVA~~l~-- 195 (383)
T COG0301 118 TSLEVNRYVGEAILENIESAGVDLKNPDVEIHIEIREDKAYIYTERIKGPGGLPVGTQGKVLLLLSGGIDSPVAAWLM-- 195 (383)
T ss_pred CHHHHHHHHHHHHHhhcccceeecCCCCeEEEEEEecCeEEEEEeeeccCCCCccccCCcEEEEEeCCCChHHHHHHH--
Confidence 35567777777777773 22344454444 89999999998887
Q ss_pred HHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEEC-CCCCCHHHHHHHHHHH-HHhC-----CcEE
Q 027416 119 MCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG-SENSSQETRMRAKKLA-DEIG-----SWHL 191 (223)
Q Consensus 119 m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~-~~~ss~~t~~~A~~LA-~~lG-----~~~~ 191 (223)
++. | ..+..+|+. .+++++..+..+..|+ ..++ ..++
T Consensus 196 -----mkR---------------G----------------~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~ 239 (383)
T COG0301 196 -----MKR---------------G----------------VEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLY 239 (383)
T ss_pred -----Hhc---------------C----------------CEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEE
Confidence 322 1 126777774 4567788888888888 5555 3457
Q ss_pred EEechHHHHHHHHHh
Q 027416 192 DVSIDTVVSAFLSLF 206 (223)
Q Consensus 192 ~i~I~~~v~~~~~~~ 206 (223)
.++..++.+.+....
T Consensus 240 ~v~f~~v~~~i~~~~ 254 (383)
T COG0301 240 VVPFTEVQEEILEKV 254 (383)
T ss_pred EEchHHHHHHHHhhc
Confidence 788888887776554
No 91
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.57 E-value=0.11 Score=45.70 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=51.4
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t 175 (223)
...++++.|||.||++++.|+ .+++. .+..++.-|..--++|
T Consensus 39 ~~~~~~~~S~Gkds~V~l~L~-------~k~~~-------------------------------~~~vif~DTg~~f~Et 80 (261)
T COG0175 39 SNPVVVSFSGGKDSTVLLHLA-------AKAFP-------------------------------DFPVIFLDTGYHFPET 80 (261)
T ss_pred CCCeEEEecCchhHHHHHHHH-------HHhcC-------------------------------CCcEEEEeCCCcCHHH
Confidence 344799999999999998886 44310 1455667766667899
Q ss_pred HHHHHHHHHHhCCcEEEEechHHHHHH
Q 027416 176 RMRAKKLADEIGSWHLDVSIDTVVSAF 202 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~~v~~~ 202 (223)
.+.+.++++.+|++..+..-++.+..-
T Consensus 81 ~~~~d~~~~~~~~~l~~~~~~~~~~~~ 107 (261)
T COG0175 81 YEFRDRLAEEYGLDLKVYRPDDEVAEG 107 (261)
T ss_pred HHHHHHHHHHcCCeEEEecCccchhhh
Confidence 999999999999887777666554443
No 92
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=95.41 E-value=0.098 Score=37.34 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=15.9
Q ss_pred eEEeccCCchHHHHHHHH
Q 027416 99 FLLPLSGGADSSSVAAIV 116 (223)
Q Consensus 99 ~vl~LSGG~DSs~~a~lv 116 (223)
+++++|||.||+.++.++
T Consensus 1 ilv~~sgg~dS~~~l~~~ 18 (86)
T cd01984 1 ILVALSGGLDSSVLLHLA 18 (86)
T ss_pred CEEEeeCCHHHHHHHHHH
Confidence 579999999999988776
No 93
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=95.05 E-value=0.061 Score=46.42 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhH
Q 027416 175 TRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 208 (223)
Q Consensus 175 t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~ 208 (223)
..+..+..|+.||+++..+......+.+...+..
T Consensus 46 ~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~ 79 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKG 79 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHH
Confidence 4467788999999998877655333344444433
No 94
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=94.41 E-value=0.13 Score=46.63 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=45.8
Q ss_pred CCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHH
Q 027416 95 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 174 (223)
Q Consensus 95 ~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~ 174 (223)
..+.+||+.|||+|++.+++-. ++ .|.+ ..+||..-+. .+
T Consensus 4 ~~~~vVLAySGgLDTscil~WL--------ke--------------qGye-----------------Viay~AnvGQ-~e 43 (412)
T KOG1706|consen 4 SKKSVVLAYSGGLDTSCILAWL--------KE--------------QGYE-----------------VIAYLANVGQ-KE 43 (412)
T ss_pred CCceEEEEecCCcCchhhhHHH--------Hh--------------cCce-----------------EEEeeccccc-hh
Confidence 3467889999999999876553 22 2322 3467775444 78
Q ss_pred HHHHHHHHHHHhCCcEEEEechHHHHHHHH
Q 027416 175 TRMRAKKLADEIGSWHLDVSIDTVVSAFLS 204 (223)
Q Consensus 175 t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~ 204 (223)
+.+.|++=|..+|+.-.. +.++-+.+.+
T Consensus 44 dfe~ar~kAlk~Gakk~~--~ed~~~eFve 71 (412)
T KOG1706|consen 44 DFEEARKKALKSGAKKVV--VEDVREEFVE 71 (412)
T ss_pred hHHHHHHhhhhcCceEEE--ehhhhHHHHh
Confidence 999999999999997533 3444444443
No 95
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=93.97 E-value=0.26 Score=46.81 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.7
Q ss_pred CCCeEEeccCCchHHHHHHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIV 116 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv 116 (223)
...++||+|||=||++++.|+
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv 33 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLI 33 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHH
Confidence 356899999999999999887
No 96
>PRK06850 hypothetical protein; Provisional
Probab=93.87 E-value=0.39 Score=46.31 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=18.8
Q ss_pred CCCeEEeccCCchHHHHHHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIV 116 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv 116 (223)
-..++||+|||=||++++.|+
T Consensus 34 ~~P~vV~fSGGKDStavL~Lv 54 (507)
T PRK06850 34 NRPWVIGYSGGKDSTAVLQLV 54 (507)
T ss_pred CCCeEEeCCCCchHHHHHHHH
Confidence 356899999999999999887
No 97
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=93.79 E-value=0.059 Score=46.36 Aligned_cols=35 Identities=6% Similarity=0.045 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhh
Q 027416 176 RMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 210 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~ 210 (223)
.+..+..|+++|+++..+.+...-+.+.+.+..++
T Consensus 47 ~~~~~~qA~algipl~~~~~~g~~~~~~~~l~~~l 81 (218)
T PF01902_consen 47 IELIEAQAEALGIPLIEIPTSGDEEDYVEDLKEAL 81 (218)
T ss_dssp GTCHHHHHHHHT--EEEEEE---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEccCccchhhHHHHHHH
Confidence 45678889999999998888744444555554444
No 98
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=91.46 E-value=0.56 Score=40.50 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEechH
Q 027416 174 ETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 174 ~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
.-.+.+..+|+.+|+++.....+.
T Consensus 46 ~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 46 PNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cchHHHHHHHHhcCCceEEEecCc
Confidence 345678999999999999998887
No 99
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=89.42 E-value=0.27 Score=46.50 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.1
Q ss_pred CCeEEeccCCchHHHHHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIV 116 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv 116 (223)
..+.|-+|||+||+++|.++
T Consensus 251 s~VcVlfSGGvDs~vvA~l~ 270 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLA 270 (520)
T ss_pred CcEEEEecCCchHHHHHHHH
Confidence 57889999999999999887
No 100
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=87.97 E-value=1.5 Score=40.46 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.4
Q ss_pred CCCCeEEeccCCchHHHHHHHHHH
Q 027416 95 GASGFLLPLSGGADSSSVAAIVGC 118 (223)
Q Consensus 95 ~~~g~vl~LSGG~DSs~~a~lv~~ 118 (223)
....+.|++|||-||++.+-|+..
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~ 49 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAE 49 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHH
Confidence 457899999999999999888733
No 101
>PLN02309 5'-adenylylsulfate reductase
Probab=79.14 E-value=14 Score=35.21 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=27.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDV 193 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i 193 (223)
+--+++-|-.--++|++.+.++++.+|.+.+.+
T Consensus 136 ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 136 FRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 445677777778999999999999999887766
No 102
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=78.06 E-value=16 Score=34.96 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=27.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDV 193 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i 193 (223)
+--++.-|..--++|++.+.++++.+|.+.+.+
T Consensus 141 ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 141 FRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 456777777778999999999999999887765
No 103
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=77.98 E-value=29 Score=35.65 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=54.5
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCC---C-
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS---S- 172 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~s---s- 172 (223)
..++|++||+..|.- ++...+++|.+ +.. .++++|..+++. +
T Consensus 249 e~ilvcI~~~~~~e~---liR~a~RlA~~---------------~~a----------------~~~av~v~~~~~~~~~~ 294 (890)
T COG2205 249 ERILVCISGSPGSEK---LIRRAARLASR---------------LHA----------------KWTAVYVETPELHRLSE 294 (890)
T ss_pred ceEEEEECCCCchHH---HHHHHHHHHHH---------------hCC----------------CeEEEEEeccccccccH
Confidence 468999999999976 44444555433 121 278888887653 2
Q ss_pred --HHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhh
Q 027416 173 --QETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 207 (223)
Q Consensus 173 --~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~ 207 (223)
......+.+||+++|+....+.-+++.+++...-.
T Consensus 295 ~~~~~l~~~~~Lae~lGae~~~l~~~dv~~~i~~ya~ 331 (890)
T COG2205 295 KEARRLHENLRLAEELGAEIVTLYGGDVAKAIARYAR 331 (890)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHH
Confidence 34556788999999999999987877777766433
No 104
>PRK10490 sensor protein KdpD; Provisional
Probab=75.69 E-value=47 Score=34.23 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=33.6
Q ss_pred EEEEEECCCCC---CHH---HHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhH
Q 027416 161 FYTVFMGSENS---SQE---TRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 208 (223)
Q Consensus 161 ~~t~~m~~~~s---s~~---t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~ 208 (223)
++++|.-+.+. +.. ......+||+++|++...+.-+++.+++.+....
T Consensus 281 ~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~~i~~~A~~ 334 (895)
T PRK10490 281 WHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVLRYARE 334 (895)
T ss_pred EEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHH
Confidence 78888876532 222 2334567999999999888888888877765444
No 105
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=73.80 E-value=9.6 Score=31.71 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=29.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEec
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI 195 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I 195 (223)
+..+|+-|...-++|.+.+.++++.+|.+...+.-
T Consensus 19 ~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 19 VKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 56788888777899999999999999998877754
No 106
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=68.87 E-value=21 Score=30.15 Aligned_cols=54 Identities=15% Similarity=0.027 Sum_probs=38.0
Q ss_pred ceEEEEEECCCCCCHHHHHH-HHHHHHHhCCcEEEEechHHHHHHHHHhhHhhCC
Q 027416 159 RIFYTVFMGSENSSQETRMR-AKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 212 (223)
Q Consensus 159 ~~~~t~~m~~~~ss~~t~~~-A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g~ 212 (223)
+.++-++=+-.+++..+... |.++|+..|+..+.|-|...-+.....+...+|+
T Consensus 113 kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~d~~~l~~iA~~tgG 167 (191)
T cd01455 113 AIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSLSDEADQLQRELPAG 167 (191)
T ss_pred cEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCCCHHHHHHHHhCCCC
Confidence 45666666554556656666 6899999999999999975445556666666654
No 107
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=64.81 E-value=20 Score=32.88 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=48.2
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
.+.+|-|||-||++.|..+ ++|.. + ..++. . -.+..++-+...--+....
T Consensus 53 ~v~igasGgkdstvlA~v~--------~~Ln~---r-------~~~g~--~----------l~Lls~degi~gyrd~sl~ 102 (347)
T KOG2840|consen 53 RVAIGASGGKDSTVLAYVL--------DALNE---R-------HDYGL--R----------LFLLSIDEGIRGYRDDSLE 102 (347)
T ss_pred ccccccccchhHHHHHHHH--------HHhhh---h-------cCCCc--e----------eeeeeccccccceeccHHH
Confidence 4778899999999977664 44321 0 00110 0 1245566555444455666
Q ss_pred HHHHHHHHhCCcEEEEechHHHH
Q 027416 178 RAKKLADEIGSWHLDVSIDTVVS 200 (223)
Q Consensus 178 ~A~~LA~~lG~~~~~i~I~~~v~ 200 (223)
.-+....+.|.+..++...++++
T Consensus 103 avkrn~~~~~lPL~ivs~~dl~~ 125 (347)
T KOG2840|consen 103 AVKRNGVQYGLPLCIVSYKDLYG 125 (347)
T ss_pred HHHHhhhhcCCceEEecHHHHhc
Confidence 67788889999999999999888
No 108
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=61.57 E-value=12 Score=32.16 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=29.5
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHH
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSS 111 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~ 111 (223)
...+|+....+..+.+++.+. ..+.|+||||-.-..
T Consensus 7 ~~~~e~~~~~a~~i~~~i~~~--~~~~l~lsgG~tp~~ 42 (239)
T PRK12358 7 KDYEEMSRVAAHHLLGYMSKT--KRVNLAITAGSTPKG 42 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCeEEEECCCCCHHH
Confidence 457889999999999999885 479999999965544
No 109
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=60.58 E-value=13 Score=32.25 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=28.2
Q ss_pred CCCHHHHHhhHHHHHHHHHHHhCCC--CeEEeccCC
Q 027416 73 HSPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGG 106 (223)
Q Consensus 73 ~~~~eEi~~~~~~~L~dylr~s~~~--g~vl~LSGG 106 (223)
....+++....+.++.+++.+.... .++|+||||
T Consensus 6 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgG 41 (238)
T COG0363 6 FEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGG 41 (238)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCC
Confidence 3456788999999999999886544 699999999
No 110
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=56.54 E-value=19 Score=30.86 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=23.5
Q ss_pred CHHHHHhhHHHHHHHHHHHh--CCCCeEEeccCC
Q 027416 75 PEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGG 106 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s--~~~g~vl~LSGG 106 (223)
..+|+....+..+.+.+++. ....+.|+||||
T Consensus 4 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGG 37 (233)
T TIGR01198 4 NSAELAEALAERIATKLQTALAERGQFSLALSGG 37 (233)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCC
Confidence 45677777777777777662 234689999999
No 111
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=53.61 E-value=20 Score=30.73 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCC
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 106 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG 106 (223)
...+++....+..|.+.+++.+ .+.|+||||
T Consensus 7 ~~~~~~~~~~a~~i~~~i~~~~--~~~l~lsgG 37 (232)
T PRK09762 7 ENYTALSERASEYLLAVIRSKP--DAVICLATG 37 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC--CeEEEECCC
Confidence 3567888999999999988853 789999999
No 112
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=50.60 E-value=23 Score=31.14 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=24.7
Q ss_pred CCCHHHHHhhHHHHHHHHHHHhCCCC--eEEeccCC
Q 027416 73 HSPEEEIAFGPGCWLWDYLRRSGASG--FLLPLSGG 106 (223)
Q Consensus 73 ~~~~eEi~~~~~~~L~dylr~s~~~g--~vl~LSGG 106 (223)
....+|+...++..+.+-..+.-.++ |-|+||||
T Consensus 14 ~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGG 49 (252)
T KOG3147|consen 14 FSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGG 49 (252)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 44567777777777777666655454 89999999
No 113
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=47.45 E-value=21 Score=29.94 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHhhHHHHHHHHHHHhCCCCeEEeccCCch
Q 027416 78 EIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 108 (223)
Q Consensus 78 Ei~~~~~~~L~dylr~s~~~g~vl~LSGG~D 108 (223)
++....+..|.++++.. .+++|+||||--
T Consensus 2 ~~~~~~a~~l~~~i~~~--~~~~i~lsgG~T 30 (232)
T cd01399 2 EMSEAAAELIAELIREK--PPAVLGLATGST 30 (232)
T ss_pred hHHHHHHHHHHHHHHhC--CCcEEEEcCCCC
Confidence 56667777788888775 478999999943
No 114
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=46.65 E-value=28 Score=29.89 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=26.6
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCC---CCeEEeccCCch
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGA---SGFLLPLSGGAD 108 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~---~g~vl~LSGG~D 108 (223)
...+++....+..|.+.++.... .+.+||||||--
T Consensus 7 ~~~~~l~~~aa~~l~~~l~~~~~~~~~~~~iglsgG~T 44 (261)
T PRK00443 7 KTAEEVGKWAARHIANRINAFLPTKERPFVLGLATGSS 44 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCCC
Confidence 45678888888888888875432 467899999954
No 115
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=46.41 E-value=33 Score=29.74 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=28.3
Q ss_pred CCHHHHHhhHHHHHHHHHHH-h--CCCCeEEeccCCchH
Q 027416 74 SPEEEIAFGPGCWLWDYLRR-S--GASGFLLPLSGGADS 109 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~-s--~~~g~vl~LSGG~DS 109 (223)
...+|+....+..+.+.+++ . .-..+.|+||||-.=
T Consensus 7 ~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgG~tP 45 (253)
T PTZ00285 7 EDADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTP 45 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEcCCCCH
Confidence 45678889999999999987 3 334699999999654
No 116
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=45.46 E-value=33 Score=29.81 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=29.7
Q ss_pred CCHHHHHhhHHHHHHHHHHH-hC--CCCeEEeccCCchHHH
Q 027416 74 SPEEEIAFGPGCWLWDYLRR-SG--ASGFLLPLSGGADSSS 111 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~-s~--~~g~vl~LSGG~DSs~ 111 (223)
...+|+....+..+.+.+++ .. ...|.|+||||---..
T Consensus 7 ~~~~~l~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstP~~ 47 (259)
T TIGR00502 7 QTYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPIG 47 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCccccCceEEEEcCCCChHH
Confidence 45678899999999999988 33 3468999999965444
No 117
>PLN02360 probable 6-phosphogluconolactonase
Probab=44.35 E-value=38 Score=29.68 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=25.8
Q ss_pred CCCHHHHHhhHHHHHHHHHHHh--CCCCeEEeccCC
Q 027416 73 HSPEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGG 106 (223)
Q Consensus 73 ~~~~eEi~~~~~~~L~dylr~s--~~~g~vl~LSGG 106 (223)
....+|+....+..+.+.++.. ....+.|+||||
T Consensus 16 ~~~~~el~~~~a~~i~~~~~~a~~~~~~~~lalsGG 51 (268)
T PLN02360 16 HENLDELSTDLAEYIAELSEASVKERGVFAIALSGG 51 (268)
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 3456788888888888887763 334688999999
No 118
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=44.15 E-value=50 Score=30.10 Aligned_cols=103 Identities=23% Similarity=0.197 Sum_probs=58.5
Q ss_pred HHHHHHHHhCCCCeEEeccCCchHHHH-----HHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcce
Q 027416 86 WLWDYLRRSGASGFLLPLSGGADSSSV-----AAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRI 160 (223)
Q Consensus 86 ~L~dylr~s~~~g~vl~LSGG~DSs~~-----a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 160 (223)
-|+.++++. .-+.||++|++|-..= ..+++.|-....++|..|.+.++ +.+.+.--|- -+-|-.--
T Consensus 198 ~lk~fi~ey--~pvlIgVdGaAD~l~~~GykP~lIvGdp~~i~~~aLR~ga~vvl------pad~dGhApG-leRiQdLG 268 (395)
T COG4825 198 SLKPFIKEY--QPVLIGVDGAADVLRKAGYKPQLIVGDPDQISTEALRCGAKVVL------PADADGHAPG-LERIQDLG 268 (395)
T ss_pred HHHHHHHhh--CCEEEEccchHHHHHHcCCCcceeecCcchhhHHHHhcccceee------ccCCCCCCch-HHHHHhcC
Confidence 345555554 5789999999998653 34566666555666655544321 1000000000 01122223
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEE-----EechHHHH
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLD-----VSIDTVVS 200 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~-----i~I~~~v~ 200 (223)
+.+.+.|+-+|| .+-|-.||..-|+.|.. ++|+..++
T Consensus 269 vgAmTFP~~gss---tDlAllLAd~hga~~lv~vG~~~~~~~ffe 310 (395)
T COG4825 269 VGAMTFPAAGSS---TDLALLLADHHGAALLVTVGHRANIETFFE 310 (395)
T ss_pred cceeeccCCCch---hhHHHHHhhccCcceeEecCCcccHHHHHh
Confidence 678888877775 35688999999998843 45555444
No 119
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=42.94 E-value=34 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=20.1
Q ss_pred HHHHhhHHHHHHHHHHHhCCCCeEEeccCCchH
Q 027416 77 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADS 109 (223)
Q Consensus 77 eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DS 109 (223)
+++++.++..|.+.+.+. ..++|+||||---
T Consensus 3 ~~~a~~i~~~i~~~i~~~--~~~~i~LsgGstp 33 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAER--GRAVIALSGGSTP 33 (199)
T ss_dssp HHHHHHHHHHHHHHHHHC--SSEEEEE--SCTH
T ss_pred HHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHH
Confidence 455666677777777665 5699999999433
No 120
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=41.74 E-value=37 Score=28.70 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=17.8
Q ss_pred HHHhhHHHHHHHHHHHhCCCCeEEeccCCc
Q 027416 78 EIAFGPGCWLWDYLRRSGASGFLLPLSGGA 107 (223)
Q Consensus 78 Ei~~~~~~~L~dylr~s~~~g~vl~LSGG~ 107 (223)
.+++.++..+.+.+++. ..+.|+||||-
T Consensus 6 ~~a~~i~~~i~~~i~~~--~~~~l~lsGGs 33 (219)
T cd01400 6 ALADRIAEALAAAIAKR--GRFSLALSGGS 33 (219)
T ss_pred HHHHHHHHHHHHHHHhc--CeEEEEECCCc
Confidence 34444555555555544 47999999994
No 121
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=40.81 E-value=41 Score=27.25 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=17.5
Q ss_pred HHhhHHHHHHHHHHHhCCCCeEEeccCC
Q 027416 79 IAFGPGCWLWDYLRRSGASGFLLPLSGG 106 (223)
Q Consensus 79 i~~~~~~~L~dylr~s~~~g~vl~LSGG 106 (223)
.+..++..+.+.+++. +.++|+||||
T Consensus 4 ~a~~i~~~i~~~~~~~--~~~~i~lsgG 29 (169)
T cd00458 4 ALKFIEDKXEKLLEEK--DDMVIGLGTG 29 (169)
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEECCC
Confidence 3445555566655554 4799999999
No 122
>PRK13287 amiF formamidase; Provisional
Probab=38.08 E-value=32 Score=31.16 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=22.9
Q ss_pred CceecCCCCCCCceEEEEEEehhhHHHHHhhc
Q 027416 1 MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSI 32 (223)
Q Consensus 1 lla~~~rFs~~d~~v~~a~vDl~~~r~~R~~~ 32 (223)
++++.+.+ +.++++++||++.+|..|...
T Consensus 241 vl~~~~~~---~~~ii~aeid~~~~~~~R~~~ 269 (333)
T PRK13287 241 TLVQGHRN---PWEIVTAEVRPDLADEARLGW 269 (333)
T ss_pred EEEeCCCC---CCeEEEEEEeHHHHHHHHHhc
Confidence 35677665 347999999999999999664
No 123
>PLN02590 probable tyrosine decarboxylase
Probab=35.66 E-value=1.7e+02 Score=28.60 Aligned_cols=121 Identities=13% Similarity=0.235 Sum_probs=63.8
Q ss_pred HHHHHhhHHHHHHHHHHHhC-------CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhc-C------------chhhH
Q 027416 76 EEEIAFGPGCWLWDYLRRSG-------ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIAN-G------------NEQVK 135 (223)
Q Consensus 76 ~eEi~~~~~~~L~dylr~s~-------~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~-g------------~~~~~ 135 (223)
.-++-..+..||.+-+.-.. ..|++ .|||-.|.++++++++-.. .+..+. + +-.+.
T Consensus 168 ~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~--~sGgSeAnl~al~aAR~~~--~~~~g~~~~~~~vvy~S~~aH~Sv~ 243 (539)
T PLN02590 168 ATELEIIVLDWLAKLLQLPDHFLSTGNGGGVI--QGTGCEAVLVVVLAARDRI--LKKVGKTLLPQLVVYGSDQTHSSFR 243 (539)
T ss_pred hHHHHHHHHHHHHHHhCCCcccccCCCCceEE--cCchHHHHHHHHHHHHHHH--HhhhcccCCCCEEEEecCCchHHHH
Confidence 45677777888888774221 23444 6999999999887743311 111111 0 11222
Q ss_pred HHHHHhhcc--C------C--CCCCCchHhhhc-----------ceEEEEEECCCCCC-HHHHHHHHHHHHHhCCcEEEE
Q 027416 136 ADAIRIGRY--A------N--GEFPTESREFAK-----------RIFYTVFMGSENSS-QETRMRAKKLADEIGSWHLDV 193 (223)
Q Consensus 136 ~~~~~~~~~--~------~--~~~p~~~~~l~~-----------~~~~t~~m~~~~ss-~~t~~~A~~LA~~lG~~~~~i 193 (223)
+-++.++-. + + ....-+++.|-+ ..++..+.++-++. -+....-.++|++.|+.+|
T Consensus 244 KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlH-- 321 (539)
T PLN02590 244 KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLH-- 321 (539)
T ss_pred HHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEE--
Confidence 222222211 0 0 001122333321 14577888876554 4567777889999998653
Q ss_pred echHHHHHHH
Q 027416 194 SIDTVVSAFL 203 (223)
Q Consensus 194 ~I~~~v~~~~ 203 (223)
+|.++....
T Consensus 322 -VDaA~GG~a 330 (539)
T PLN02590 322 -VDAAYAGNA 330 (539)
T ss_pred -Eecchhhhh
Confidence 455555443
No 124
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=35.45 E-value=91 Score=20.78 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhC---CCCCceecc
Q 027416 174 ETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG---KRPRYKVTM 220 (223)
Q Consensus 174 ~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g---~~p~~~~~~ 220 (223)
..-..|+.+.+..|+++.+++|+.- ......+....| ..|.--.+|
T Consensus 11 p~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 11 PYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred hHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECC
Confidence 3456788888999999999999854 223333333344 346555554
No 125
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=34.90 E-value=41 Score=30.71 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=23.5
Q ss_pred ceecCCCCCCCceEEEEEEehhhHHHHHhhcCch
Q 027416 2 IAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF 35 (223)
Q Consensus 2 la~~~rFs~~d~~v~~a~vDl~~~r~~R~~~~s~ 35 (223)
+++...+ +.++++|+||++.++..|....++
T Consensus 243 la~~~~~---~e~ii~adld~~~i~~~R~~~~~~ 273 (345)
T PRK13286 243 LGECGEE---EMGIQYAQLSVSQIRDARRNDQSQ 273 (345)
T ss_pred EEecCCC---CCeEEEEEEeHHHHHHHHHhCCcc
Confidence 5666554 347999999999999999776443
No 126
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=33.50 E-value=1.7e+02 Score=21.42 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=25.1
Q ss_pred EEEECCCCCCHHHHHH---HHHHHHHhCCcEEEEechH
Q 027416 163 TVFMGSENSSQETRMR---AKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 163 t~~m~~~~ss~~t~~~---A~~LA~~lG~~~~~i~I~~ 197 (223)
-+|+.|-..+..++++ .+.|-+..|+.|.++||+.
T Consensus 3 ~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~ 40 (92)
T cd03030 3 KVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM 40 (92)
T ss_pred EEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC
Confidence 4566665556666664 5567788899999999973
No 127
>PRK06934 flavodoxin; Provisional
Probab=32.38 E-value=88 Score=26.95 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 173 QETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 173 ~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
..|+.-|+.+|+.+|++..+|...+.+
T Consensus 71 GnTk~vAe~Ia~~~gaDl~eI~~~~~Y 97 (221)
T PRK06934 71 GSTQYVAQIIQEETGGDLFRIETVKPY 97 (221)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEcccc
Confidence 589999999999999999999876544
No 128
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=30.71 E-value=99 Score=22.71 Aligned_cols=36 Identities=17% Similarity=0.032 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCcEEEEechH--HHHHHHHHhhHhhC
Q 027416 176 RMRAKKLADEIGSWHLDVSIDT--VVSAFLSLFQTLTG 211 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~--~v~~~~~~~~~~~g 211 (223)
-.+|+++-+.+|+++.++||+. ....+...+...+|
T Consensus 21 C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg 58 (99)
T TIGR02189 21 CHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC 58 (99)
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcC
Confidence 4578889999999999999973 23344445554443
No 129
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=30.10 E-value=2e+02 Score=20.39 Aligned_cols=35 Identities=6% Similarity=0.019 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhC
Q 027416 176 RMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 211 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g 211 (223)
-..|+++-+..|+++.++||+.- ..+...+...+|
T Consensus 26 C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g 60 (90)
T cd03028 26 SRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSN 60 (90)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhC
Confidence 45788888999999999999643 334444444444
No 130
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=29.89 E-value=49 Score=29.14 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=21.8
Q ss_pred ceecCCCCCCCceEEEEEEehhhHHHHHhhc
Q 027416 2 IAQGSQFSLRDVEVVVAQVDLDAVAGFRGSI 32 (223)
Q Consensus 2 la~~~rFs~~d~~v~~a~vDl~~~r~~R~~~ 32 (223)
+++.+++ +..+++++||++.++..|...
T Consensus 230 la~~~~~---~e~i~~adid~~~~~~~R~~~ 257 (291)
T cd07565 230 LGEGGRE---PDEIVTAELSPSLVRDARKNW 257 (291)
T ss_pred EEeCCCC---CCcEEEEEEcHHHHHHHHhcC
Confidence 5666654 236999999999999998665
No 131
>TIGR02728 spore_gerQ spore coat protein GerQ. Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=29.82 E-value=74 Score=23.09 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=26.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 194 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~ 194 (223)
+-|+||-.+|+++.-..--+-..++-|-+|..|.
T Consensus 19 ~~T~y~Tfenn~ew~akvf~G~iE~AGRDhiiis 52 (82)
T TIGR02728 19 TATVYMTFENSPEWAARVFRGQIENAGRDHIVIS 52 (82)
T ss_pred eEEEEEEEcCChHhhhhheeeehhhcCcceEEEc
Confidence 8899999999877655555567777888887663
No 132
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=29.30 E-value=1e+02 Score=26.14 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=31.8
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeE-EeccCCchHHHH
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFL-LPLSGGADSSSV 112 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~v-l~LSGG~DSs~~ 112 (223)
..+++...++.-+..|.++-+.+.|+ ||.|=|+|=.-.
T Consensus 46 tP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~ 84 (192)
T PF06057_consen 46 TPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPF 84 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHH
Confidence 35688999999999999998888865 779999997553
No 133
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=29.06 E-value=2.8e+02 Score=26.78 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=36.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHH-HHHHHhhHhh
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVS-AFLSLFQTLT 210 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~-~~~~~~~~~~ 210 (223)
|+-+-=...-.+.+|.+-|.+|.+..|++-..+|...+-+ .+...+++++
T Consensus 183 FvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 183 FVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 4433333334578999999999999999999999987665 3444555544
No 134
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=28.85 E-value=1.1e+02 Score=20.71 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEechH
Q 027416 174 ETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 174 ~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
..-..|+++-++.|+++..+||+.
T Consensus 10 p~C~~ak~~L~~~~i~~~~~di~~ 33 (72)
T TIGR02194 10 VQCKMTKKALEEHGIAFEEINIDE 33 (72)
T ss_pred HHHHHHHHHHHHCCCceEEEECCC
Confidence 345678888889999999999984
No 135
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=28.50 E-value=1.1e+02 Score=22.40 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhC
Q 027416 177 MRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 211 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g 211 (223)
..|+++-+.+|+++.++||+.- .+....+...+|
T Consensus 31 ~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg 64 (97)
T TIGR00365 31 ARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSN 64 (97)
T ss_pred HHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhC
Confidence 5788999999999999999532 233444444444
No 136
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=27.80 E-value=1.3e+02 Score=24.56 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCcEEEEe------chHHHHHHHHHhhHhhCCCCC
Q 027416 173 QETRMRAKKLADEIGSWHLDVS------IDTVVSAFLSLFQTLTGKRPR 215 (223)
Q Consensus 173 ~~t~~~A~~LA~~lG~~~~~i~------I~~~v~~~~~~~~~~~g~~p~ 215 (223)
..+.+.++.+|+..|..+.+++ |+++++.+.+.+..--|++|.
T Consensus 127 ~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~~~~ 175 (189)
T cd04121 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRPPQ 175 (189)
T ss_pred CCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 3467789999999999999887 888888888777766677664
No 137
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=27.38 E-value=58 Score=32.56 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=30.6
Q ss_pred CCCCCHHHHHhhHHHHHHHHHHHhCC--CCeEEeccCCchHHH
Q 027416 71 TYHSPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSS 111 (223)
Q Consensus 71 ~~~~~~eEi~~~~~~~L~dylr~s~~--~g~vl~LSGG~DSs~ 111 (223)
......+|+...++..+.+.+++... +.++|+||||-.=..
T Consensus 31 ~if~~~ee~a~~vA~~I~~~I~~~~~~~~~~~laLsGGsTP~~ 73 (652)
T PRK02122 31 DIFESSEEASRAVAQEIATLIRERQAEGKPCVLGLATGSSPIG 73 (652)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcCHHH
Confidence 33556788899999999998887543 459999999954443
No 138
>PRK08118 topology modulation protein; Reviewed
Probab=27.07 E-value=1.5e+02 Score=23.85 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=32.1
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCcEEEEe-ch------HHH-HHHHHHhhHhhCCCCCceeccc
Q 027416 165 FMGSENSSQETRMRAKKLADEIGSWHLDVS-ID------TVV-SAFLSLFQTLTGKRPRYKVTMV 221 (223)
Q Consensus 165 ~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~-I~------~~v-~~~~~~~~~~~g~~p~~~~~~~ 221 (223)
.++..+|++.| -|+.|++.+|.++..+| +- ..- +.....+...+. .+.|-.+|.
T Consensus 6 I~G~~GsGKST--lak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~-~~~wVidG~ 67 (167)
T PRK08118 6 LIGSGGSGKST--LARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVK-EDEWIIDGN 67 (167)
T ss_pred EECCCCCCHHH--HHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhc-CCCEEEeCC
Confidence 34555677665 78999999999987666 21 000 123333434343 367887774
No 139
>PF15591 Imm17: Immunity protein 17
Probab=26.76 E-value=38 Score=24.24 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.3
Q ss_pred HHhCCCCeEEeccCCc
Q 027416 92 RRSGASGFLLPLSGGA 107 (223)
Q Consensus 92 r~s~~~g~vl~LSGG~ 107 (223)
+..|.+|+|||+|++=
T Consensus 22 ei~Gk~GVVlG~SeeD 37 (74)
T PF15591_consen 22 EIWGKRGVVLGISEED 37 (74)
T ss_pred hhcCceeEEEEEecCC
Confidence 5568899999999873
No 140
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=26.72 E-value=1.5e+02 Score=22.51 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEech------HHHHHHHHHhhH
Q 027416 161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID------TVVSAFLSLFQT 208 (223)
Q Consensus 161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~------~~v~~~~~~~~~ 208 (223)
+++.-...+...+.+...-++.|+++|..+..+.|. +.++++...+..
T Consensus 31 VInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~ 84 (110)
T PF04273_consen 31 VINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES 84 (110)
T ss_dssp EEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 444433333333444455578899999999999887 344455555544
No 141
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=26.37 E-value=2.7e+02 Score=20.74 Aligned_cols=26 Identities=38% Similarity=0.424 Sum_probs=18.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 027416 167 GSENSSQETRMRAKKLADEIGSWHLDVS 194 (223)
Q Consensus 167 ~~~~ss~~t~~~A~~LA~~lG~~~~~i~ 194 (223)
+..+|+..| .|+.||+.+|.+|...+
T Consensus 6 G~~GsGKst--~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 6 GPAGSGKST--VAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CCCCCCHHH--HHHHHHHHhCCceeccc
Confidence 334565555 48899999999987655
No 142
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=25.90 E-value=4.7e+02 Score=24.76 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCC-CeEEeccCCchHHHHH
Q 027416 86 WLWDYLRRSGAS-GFLLPLSGGADSSSVA 113 (223)
Q Consensus 86 ~L~dylr~s~~~-g~vl~LSGG~DSs~~a 113 (223)
.+..|-+.++.. |.=|+++||++.++--
T Consensus 121 ~~~~~~~~~~~~iGaHvSiaGG~~~a~~~ 149 (413)
T PTZ00372 121 KIAELAEKSNVYIGAHVSASGGVDNSPIN 149 (413)
T ss_pred HHHHHhhccCceEEEEEeccccHHHHHHH
Confidence 344444445443 6667799999986643
No 143
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.56 E-value=75 Score=30.07 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=26.8
Q ss_pred HHhhHHHHHHHHHHHhCCCCeEEeccCCch
Q 027416 79 IAFGPGCWLWDYLRRSGASGFLLPLSGGAD 108 (223)
Q Consensus 79 i~~~~~~~L~dylr~s~~~g~vl~LSGG~D 108 (223)
|.+.+.+.|.+|..+.|.+.|..++||.+-
T Consensus 527 itnelilrlqeyfekqgvkdfacsfsgsip 556 (802)
T KOG3679|consen 527 ITNELILRLQEYFEKQGVKDFACSFSGSIP 556 (802)
T ss_pred hHHHHHHHHHHHHHHcCcceeeeeccCCcc
Confidence 567788899999999999999999999863
No 144
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=25.00 E-value=91 Score=25.78 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 167 GSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 167 ~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
|+..++++|.+.|-+-|+++|+.|..+--..-+
T Consensus 7 pG~eNT~~tle~a~erA~elgik~~vVAS~tG~ 39 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGIKHIVVASSTGY 39 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCcceEEEEecccH
Confidence 455677999999999999999999888665433
No 145
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=24.55 E-value=3.4e+02 Score=22.34 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHHhhHHHHHHHHHHHhC-CCCeEEeccCCchHHHHHHHHHHHHHHHHHH
Q 027416 77 EEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKE 126 (223)
Q Consensus 77 eEi~~~~~~~L~dylr~s~-~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~ 126 (223)
+|-...+-.|+..+..... .++|+|| ||-=.++.+-++...|++|-..
T Consensus 79 ~~~v~~LE~~id~~~~~l~~l~~FiLP--ggs~~~A~lh~aRtv~RRAER~ 127 (171)
T TIGR00636 79 EEDVKWLEERIDQYRKELPPLKLFVLP--GGTPAAAFLHVARTVARRAERR 127 (171)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCceeeC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777766555 6788866 8877888888888889887655
No 146
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=23.52 E-value=96 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHhCCcEEEEech
Q 027416 172 SQETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 172 s~~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
+..|+.-|+.+|+.+|++..+|.-.
T Consensus 10 tGnT~~vA~~Ia~~~gadi~eI~~~ 34 (156)
T PF12682_consen 10 TGNTKKVAEKIAEKTGADIFEIEPV 34 (156)
T ss_dssp SSHHHHHHHHHHHCCT-EEEE-BBS
T ss_pred CchHHHHHHHHHHHHCCCEEEEEeC
Confidence 3689999999999999999888643
No 147
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=22.97 E-value=2.3e+02 Score=22.73 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHhCCcEEEEech
Q 027416 171 SSQETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 171 ss~~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
.+-..-..|+.+-+.+|+.+.++||+
T Consensus 14 ~t~~~C~~ak~iL~~~~V~~~e~DVs 39 (147)
T cd03031 14 KTFEDCNNVRAILESFRVKFDERDVS 39 (147)
T ss_pred CcChhHHHHHHHHHHCCCcEEEEECC
Confidence 34566788999999999999999996
No 148
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.73 E-value=2e+02 Score=25.75 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=58.7
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCch----------HHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhcc
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD----------SSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRY 144 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~D----------Ss~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~ 144 (223)
++.++.-+-.-.|..||+..+...+| |+||+- +...++++ -+.+.++..|++.++.-+-.+-..
T Consensus 48 e~~~~~iG~vg~lik~l~~~~v~~vV--l~G~v~~Rp~~~~L~~d~~~l~~l----p~Iv~~~~~gDDaLLk~vi~~~E~ 121 (279)
T COG3494 48 EYKEVSIGEVGKLIKLLKTEGVDRVV--LAGGVERRPNFRDLRPDKIGLAVL----PKIVEALIRGDDALLKAVIDFIES 121 (279)
T ss_pred CCeEEeHHHHHHHHHHHHHcCCcEEE--EecccccCcchhhcccccchhhHH----HHHHHHhccCcHHHHHHHHHHHHh
Confidence 34556666778889999999998887 788876 22222222 222455666777665544222111
Q ss_pred CCCCCCCchHhhhcceE-----EEEEECCCCCCHHHHHHHHHHHHHhCC
Q 027416 145 ANGEFPTESREFAKRIF-----YTVFMGSENSSQETRMRAKKLADEIGS 188 (223)
Q Consensus 145 ~~~~~p~~~~~l~~~~~-----~t~~m~~~~ss~~t~~~A~~LA~~lG~ 188 (223)
. ..---.++++++..+ +|=.-|. ++...+.+.|-+.|+.||.
T Consensus 122 ~-GfKvigahei~~~ll~~~g~lt~~~P~-~~d~~dI~~g~~aA~~lg~ 168 (279)
T COG3494 122 R-GFKVIGAHEIVPGLLAETGPLTKKEPD-NEDLRDIELGIEAANALGA 168 (279)
T ss_pred c-CcEEecHhhhhhhhccCCCcccCCCCC-hhhHHHHHHHHHHHHHhcc
Confidence 1 011112344443332 2222222 3446677788899999984
No 149
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.44 E-value=1.5e+02 Score=25.49 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHhCCcEEE------EechHHHHHHHHHhhHhhCCC
Q 027416 172 SQETRMRAKKLADEIGSWHLD------VSIDTVVSAFLSLFQTLTGKR 213 (223)
Q Consensus 172 s~~t~~~A~~LA~~lG~~~~~------i~I~~~v~~~~~~~~~~~g~~ 213 (223)
-....+.+++||.++|+.|.+ +||++++..+...+...++..
T Consensus 133 R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 133 RQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDA 180 (207)
T ss_pred ccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchh
Confidence 357889999999999999976 467777777776666544443
No 150
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=20.35 E-value=1.1e+02 Score=27.34 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=17.4
Q ss_pred HHhhHHHHHHHHHHHhCCCCeEEeccCCc
Q 027416 79 IAFGPGCWLWDYLRRSGASGFLLPLSGGA 107 (223)
Q Consensus 79 i~~~~~~~L~dylr~s~~~g~vl~LSGG~ 107 (223)
+...++.++..++++++.+. |.||||+
T Consensus 243 l~~~l~~~~~~~~~~~~~~~--v~lsGGV 269 (314)
T TIGR03723 243 VVDVLVEKTKRALKKTGLKT--LVVAGGV 269 (314)
T ss_pred HHHHHHHHHHHHHHHhCCCe--EEEeccH
Confidence 34555556666666666654 6799995
No 151
>PRK03839 putative kinase; Provisional
Probab=20.26 E-value=1.5e+02 Score=23.60 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=20.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 027416 165 FMGSENSSQETRMRAKKLADEIGSWHLDVS 194 (223)
Q Consensus 165 ~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~ 194 (223)
.++.+++++.|. |+.||+.+|..|..++
T Consensus 5 l~G~pGsGKsT~--~~~La~~~~~~~id~d 32 (180)
T PRK03839 5 ITGTPGVGKTTV--SKLLAEKLGYEYVDLT 32 (180)
T ss_pred EECCCCCCHHHH--HHHHHHHhCCcEEehh
Confidence 345557777774 7889999999987654
Done!