Query 027416
Match_columns 223
No_of_seqs 233 out of 1546
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ilv_A Glutamine-dependent NAD 100.0 6.9E-32 2.4E-36 260.3 16.5 181 1-219 244-429 (634)
2 3sdb_A Glutamine-dependent NAD 99.9 2.3E-24 7.8E-29 209.4 14.0 178 1-210 257-444 (680)
3 4f4h_A Glutamine dependent NAD 99.9 2.2E-22 7.7E-27 191.8 16.1 104 73-212 277-380 (565)
4 3n05_A NH(3)-dependent NAD(+) 99.8 4.2E-18 1.4E-22 162.8 16.3 99 72-206 302-400 (590)
5 1wxi_A NH(3)-dependent NAD(+) 99.7 6.7E-17 2.3E-21 141.4 12.8 107 77-213 20-128 (275)
6 3q4g_A NH(3)-dependent NAD(+) 99.7 8.1E-17 2.8E-21 141.3 12.4 100 76-204 20-120 (279)
7 1kqp_A NAD+ synthase, NH(3)-de 99.7 1.8E-16 6.1E-21 138.3 13.3 108 76-214 18-126 (271)
8 3p52_A NH(3)-dependent NAD(+) 99.6 8.1E-16 2.8E-20 132.7 11.6 94 74-204 4-97 (249)
9 3dpi_A NAD+ synthetase; ssgcid 99.6 1.3E-15 4.3E-20 134.0 13.1 103 75-208 25-128 (285)
10 1xng_A NH(3)-dependent NAD(+) 99.6 3.5E-15 1.2E-19 129.4 13.2 95 75-206 4-98 (268)
11 3fiu_A NH(3)-dependent NAD(+) 99.6 2.4E-15 8.4E-20 129.7 12.1 100 74-211 7-106 (249)
12 2e18_A NH(3)-dependent NAD(+) 99.4 5.8E-13 2E-17 114.5 12.0 90 75-206 5-94 (257)
13 2vxo_A GMP synthase [glutamine 98.9 3E-09 1E-13 103.6 10.3 87 76-201 223-309 (697)
14 1gpm_A GMP synthetase, XMP ami 98.8 1.3E-08 4.3E-13 96.1 10.0 84 76-199 210-294 (525)
15 2dpl_A GMP synthetase, GMP syn 98.8 3.4E-08 1.2E-12 87.3 10.9 82 77-198 4-86 (308)
16 2hma_A Probable tRNA (5-methyl 98.7 3.1E-08 1.1E-12 89.9 9.2 72 90-199 3-82 (376)
17 2pg3_A Queuosine biosynthesis 98.7 5.9E-08 2E-12 81.6 8.8 65 95-197 1-66 (232)
18 1jgt_A Beta-lactam synthetase; 98.6 1E-07 3.6E-12 89.6 10.6 84 74-197 217-302 (513)
19 2ywb_A GMP synthase [glutamine 98.6 1.8E-07 6.1E-12 87.8 11.8 83 76-199 192-274 (503)
20 3bl5_A Queuosine biosynthesis 98.6 7E-08 2.4E-12 79.7 8.0 63 97-197 4-66 (219)
21 3uow_A GMP synthetase; structu 98.6 1.7E-07 5.8E-12 89.1 10.4 75 88-199 246-323 (556)
22 3tqi_A GMP synthase [glutamine 98.5 2.9E-07 9.8E-12 86.9 9.5 82 78-199 215-297 (527)
23 2der_A TRNA-specific 2-thiouri 98.5 3.8E-07 1.3E-11 82.8 9.5 66 96-199 17-90 (380)
24 1q15_A CARA; CMPR, (2S,5S)-5-c 98.4 6.9E-07 2.4E-11 83.8 10.1 84 74-197 214-299 (503)
25 1ct9_A Asparagine synthetase B 98.4 7.7E-07 2.6E-11 84.4 10.0 94 78-197 206-301 (553)
26 1vl2_A Argininosuccinate synth 98.4 4E-07 1.4E-11 83.8 7.5 64 96-199 14-78 (421)
27 3k32_A Uncharacterized protein 98.4 4.6E-07 1.6E-11 75.1 6.9 63 96-198 6-68 (203)
28 1sur_A PAPS reductase; assimil 98.3 3.6E-06 1.2E-10 69.8 9.7 63 97-197 45-107 (215)
29 1kor_A Argininosuccinate synth 98.3 1.7E-06 5.6E-11 79.2 7.6 64 97-199 1-65 (400)
30 2c5s_A THII, probable thiamine 98.2 3.5E-06 1.2E-10 77.1 9.2 67 97-201 188-260 (413)
31 1wy5_A TILS, hypothetical UPF0 98.2 3.9E-06 1.3E-10 73.9 7.9 68 96-197 24-94 (317)
32 1k92_A Argininosuccinate synth 98.1 2.3E-06 8E-11 79.4 6.2 65 97-199 11-76 (455)
33 2nz2_A Argininosuccinate synth 98.1 5.8E-06 2E-10 75.9 7.0 63 97-199 6-69 (413)
34 3rjz_A N-type ATP pyrophosphat 98.0 5.3E-06 1.8E-10 70.9 5.5 64 97-198 5-74 (237)
35 3a2k_A TRNA(Ile)-lysidine synt 98.0 2E-05 6.8E-10 73.1 9.3 67 96-196 18-87 (464)
36 2o8v_A Phosphoadenosine phosph 97.9 3.7E-05 1.3E-09 65.6 9.0 63 97-197 46-108 (252)
37 1ni5_A Putative cell cycle pro 97.8 6.8E-05 2.3E-09 68.9 9.3 78 85-197 4-83 (433)
38 1zun_A Sulfate adenylyltransfe 97.6 0.00039 1.3E-08 61.7 10.5 76 86-197 38-113 (325)
39 2wsi_A FAD synthetase; transfe 97.6 0.00022 7.5E-09 62.7 8.5 94 86-196 41-137 (306)
40 2oq2_A Phosphoadenosine phosph 97.5 0.00032 1.1E-08 60.1 8.6 65 97-196 42-110 (261)
41 1vbk_A Hypothetical protein PH 97.4 0.00026 8.9E-09 62.3 7.1 60 98-199 181-248 (307)
42 2goy_A Adenosine phosphosulfat 97.1 0.0032 1.1E-07 54.2 10.0 62 97-197 55-116 (275)
43 3fwk_A FMN adenylyltransferase 95.8 0.034 1.2E-06 48.9 8.7 92 86-194 46-140 (308)
44 1fs5_A Glucosamine-6-phosphate 55.4 14 0.00048 30.7 4.8 34 74-107 7-43 (266)
45 1t1v_A SH3BGRL3, SH3 domain-bi 53.6 49 0.0017 22.4 6.8 43 177-220 22-68 (93)
46 1y89_A DEVB protein; structura 49.2 14 0.00048 30.4 3.7 34 75-112 9-42 (238)
47 2bkx_A Glucosamine-6-phosphate 46.5 21 0.00073 29.0 4.4 31 74-106 7-37 (242)
48 1aba_A Glutaredoxin; electron 44.6 24 0.00082 23.6 3.8 23 174-196 15-37 (87)
49 3hn6_A Glucosamine-6-phosphate 44.5 24 0.00083 30.1 4.6 35 73-107 27-64 (289)
50 1ne7_A Glucosamine-6-phosphate 42.8 26 0.0009 29.6 4.5 37 74-112 7-46 (289)
51 3lwd_A 6-phosphogluconolactona 42.6 28 0.00095 28.5 4.5 31 76-106 10-42 (226)
52 3css_A 6-phosphogluconolactona 42.4 27 0.00091 29.3 4.5 34 73-106 11-46 (267)
53 3eb9_A 6-phosphogluconolactona 38.6 30 0.001 29.0 4.2 37 74-112 11-49 (266)
54 3lhi_A Putative 6-phosphogluco 38.2 23 0.00078 29.1 3.3 32 75-106 10-43 (232)
55 3nwp_A 6-phosphogluconolactona 36.6 25 0.00086 28.9 3.3 33 74-106 12-46 (233)
56 1u6t_A SH3 domain-binding glut 36.3 72 0.0025 23.7 5.6 34 163-196 3-39 (121)
57 2ri0_A Glucosamine-6-phosphate 35.7 34 0.0011 27.6 3.9 30 74-106 8-37 (234)
58 3oc6_A 6-phosphogluconolactona 35.0 42 0.0014 27.8 4.5 36 74-111 14-51 (248)
59 3rhb_A ATGRXC5, glutaredoxin-C 34.8 85 0.0029 21.7 5.6 48 174-221 30-82 (113)
60 3tx2_A Probable 6-phosphogluco 33.6 30 0.001 28.8 3.3 36 74-111 14-51 (251)
61 1vl1_A 6PGL, 6-phosphogluconol 33.4 24 0.00083 29.0 2.7 34 77-112 23-58 (232)
62 3o94_A Nicotinamidase; hydrola 33.3 59 0.002 26.2 5.0 29 171-199 181-210 (211)
63 3oa3_A Aldolase; structural ge 32.8 2.1E+02 0.0073 24.4 8.7 40 155-194 169-208 (288)
64 3ico_A 6PGL, 6-phosphogluconol 32.6 31 0.0011 29.0 3.3 37 73-111 29-67 (268)
65 3e15_A Glucose-6-phosphate 1-d 30.7 53 0.0018 28.5 4.5 37 74-112 33-73 (312)
66 2lqo_A Putative glutaredoxin R 29.7 56 0.0019 22.7 3.8 22 176-197 17-38 (92)
67 1wik_A Thioredoxin-like protei 28.1 1.5E+02 0.005 20.5 5.9 45 175-220 32-78 (109)
68 2dyu_A Formamidase; AMIF, CEK, 27.8 41 0.0014 28.8 3.4 30 2-34 243-272 (334)
69 2vhh_A CG3027-PA; hydrolase; 2 25.2 52 0.0018 29.2 3.6 23 12-34 335-357 (405)
70 3nze_A Putative transcriptiona 22.5 98 0.0034 25.7 4.6 32 76-107 35-66 (267)
71 3ic4_A Glutaredoxin (GRX-1); s 21.9 1.7E+02 0.0059 19.0 5.6 46 175-220 24-75 (92)
72 2klx_A Glutaredoxin; thioredox 21.8 1.7E+02 0.0059 19.0 5.2 41 177-220 20-63 (89)
73 2yan_A Glutaredoxin-3; oxidore 20.5 1.5E+02 0.0053 20.2 4.7 45 175-220 34-80 (105)
No 1
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.97 E-value=6.9e-32 Score=260.31 Aligned_cols=181 Identities=24% Similarity=0.359 Sum_probs=149.1
Q ss_pred CceecCCCCCCCceEEEEEEehhhHHHHHhhcCchhhhhhccCCccEEEEeeccCCCCCCCCCCCCCCcCCCCCCHHHHH
Q 027416 1 MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIA 80 (223)
Q Consensus 1 lla~~~rFs~~d~~v~~a~vDl~~~r~~R~~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~eEi~ 80 (223)
++++.++|++++.++++|+||+++++..|.+. + ..++.++||+.
T Consensus 244 vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~----------------------~--------------~~~~~~~~~~~ 287 (634)
T 3ilv_A 244 LIQRNDRLSFKNVNLIYADIATDSAETPETVL----------------------T--------------QDDLEKEFEFW 287 (634)
T ss_dssp EEEECCSSCSSSEEEEEEEEEC--------------------------------------------------CCHHHHHH
T ss_pred EEEECCCCCCCCceEEEEEEEhHHhHHHHhcC----------------------C--------------CCCCCcHHHHH
Confidence 57899999987779999999999998777431 0 01134589999
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHH-----HhhccCCCCCCCchHh
Q 027416 81 FGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAI-----RIGRYANGEFPTESRE 155 (223)
Q Consensus 81 ~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~-----~~~~~~~~~~p~~~~~ 155 (223)
.++++||||||+++|.++++||||||+|||++|+||+.||++|++++ |.++|+.++. ++......+.|.++++
T Consensus 288 ~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~al--G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (634)
T 3ilv_A 288 EATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKEL--GLTAFLQKSNMETLFDLPALQHLPFEEQAKK 365 (634)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHTCGGGCCSSCSSCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHh--CchhhhhhhhcccccccccccccccccchhH
Confidence 99999999999999999999999999999999999999999999997 5688887775 2222222345667899
Q ss_pred hhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhCCCCCceec
Q 027416 156 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVT 219 (223)
Q Consensus 156 l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g~~p~~~~~ 219 (223)
+|+..++|||||+.+|+..++++|+++|+.||++|++|+|+++++++.+.+...+|++|.|+.+
T Consensus 366 ~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~ 429 (634)
T 3ilv_A 366 ITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKD 429 (634)
T ss_dssp HHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTC
T ss_pred hhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999988754
No 2
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.91 E-value=2.3e-24 Score=209.36 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=126.9
Q ss_pred CceecCCCCCCCceEEEEEEehhhHHHHHhhcCchhhhhh----ccCCccEEEEeeccCCCCCCCC---CCCCCCcCCC-
Q 027416 1 MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQAS----CKTKISSVAVQYSLCQPFNLKM---SLSGPLKITY- 72 (223)
Q Consensus 1 lla~~~rFs~~d~~v~~a~vDl~~~r~~R~~~~s~~~~~~----~~~~~~~v~~~~~~~~~~~~~~---~~~~~v~~~~- 72 (223)
+++++++|+.++ ++++++||+++++..|.++.+|..... ....|++|.+++..+..+..+. .+.|++|...
T Consensus 257 vla~~~~f~~~e-~ll~adiDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 335 (680)
T 3sdb_A 257 LLAESERFPKGV-RRSVADVDTELLRSERLRMGTFDDNRRHHRELTESFRRIDFALDPPAGDIGLLREVERFPFVPADPQ 335 (680)
T ss_dssp EEEECCSSCSSC-EEEEEEEEHHHHHHHHHHCHHHHHHHHHTHHHHHTCEEEEECCCCCCSCCCCCSCCCSCTTSCSSHH
T ss_pred EEEECCCCCCCC-cEEEEEEcHHHHHHHHHhCCchhhhhhhhccccccceeeeeeccCccccccccccccCCCCCCcchh
Confidence 578999997654 899999999999999988877754321 1134777666554332222222 4455555422
Q ss_pred --CCCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCC
Q 027416 73 --HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFP 150 (223)
Q Consensus 73 --~~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p 150 (223)
...|+++...+..||+||++++|.++++||||||+|||++|++ |.+++++||. +.+
T Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l----~~~a~~~lg~------------~~~------ 393 (680)
T 3sdb_A 336 RLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIV----ATHAMDREGR------------PRS------ 393 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHH----HHHHHHHTTC------------CGG------
T ss_pred hcchhHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHH----HHHHHHHhCC------------CCc------
Confidence 2458899999999999999999999999999999999987655 4555666431 111
Q ss_pred CchHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhh
Q 027416 151 TESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 210 (223)
Q Consensus 151 ~~~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~ 210 (223)
.+++++||+.++++.|.++|+++|+.||++|++|||+++++++.+.+...+
T Consensus 394 ---------~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~ 444 (680)
T 3sdb_A 394 ---------DILAFALPGFATGEHTKNNAIKLARALGVTFSEIDIGDTARLMLHTIGHPY 444 (680)
T ss_dssp ---------GEEEEECCC--------CHHHHHHHHHTCEEEECCCHHHHHHHHHHC----
T ss_pred ---------eEEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHhchhh
Confidence 389999999989999999999999999999999999999999988876644
No 3
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=99.88 E-value=2.2e-22 Score=191.76 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=93.8
Q ss_pred CCCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCc
Q 027416 73 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTE 152 (223)
Q Consensus 73 ~~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~ 152 (223)
..+++|+.+++++||||||+|+|.+|+|||||||+|||++|+|+ +++| +.+
T Consensus 277 ~~~~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la-------~~al--------------g~~-------- 327 (565)
T 4f4h_A 277 LSVEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVA-------VDAL--------------GAE-------- 327 (565)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHHH--------------CGG--------
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHH-------HHHh--------------CCc--------
Confidence 45688999999999999999999999999999999999999887 6663 332
Q ss_pred hHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhCC
Q 027416 153 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 212 (223)
Q Consensus 153 ~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g~ 212 (223)
++++++||+++|++.|+++|+.||+.||++|++|+|+++++++...+...++.
T Consensus 328 -------~v~~v~mp~~~ts~~t~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~ 380 (565)
T 4f4h_A 328 -------RVRAVMMPSRYTAGISTTDAADMARRVGVRYDEIAIAPMFDAFRASLAAEFAG 380 (565)
T ss_dssp -------GEEEEECCCTTCCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHTTTTTT
T ss_pred -------cEEEEeccccccccchHHHHHHHHHHhCCceeeeecchHHHHHHHHhhhcccC
Confidence 49999999999999999999999999999999999999999999888776543
No 4
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.77 E-value=4.2e-18 Score=162.81 Aligned_cols=99 Identities=31% Similarity=0.385 Sum_probs=88.0
Q ss_pred CCCCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCC
Q 027416 72 YHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPT 151 (223)
Q Consensus 72 ~~~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~ 151 (223)
...+++++..++.+||+||++++|.++++||||||+|||++|+|+ .+++ +..
T Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la-------~~al--------------G~~------- 353 (590)
T 3n05_A 302 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIA-------CDAL--------------GAQ------- 353 (590)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHH-------HHHH--------------CGG-------
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHH-------HHHh--------------Ccc-------
Confidence 356799999999999999999999999999999999999999886 5553 212
Q ss_pred chHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHh
Q 027416 152 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF 206 (223)
Q Consensus 152 ~~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~ 206 (223)
.+++++|++.++++.+.++|+++|+.||++|++|+|++.++.+.+.+
T Consensus 354 --------~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l 400 (590)
T 3n05_A 354 --------NVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASL 400 (590)
T ss_dssp --------GEEEEECCCSSCCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHH
T ss_pred --------cEEEEEECCCCCCHHHHHHHHHHHHHcCCcEEEEEChHHHHHHHHHh
Confidence 38999999999999999999999999999999999999988877554
No 5
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.71 E-value=6.7e-17 Score=141.41 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=82.4
Q ss_pred HHHHhhHHHHHHHHHHHhC-CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHh
Q 027416 77 EEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESRE 155 (223)
Q Consensus 77 eEi~~~~~~~L~dylr~s~-~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (223)
++....+.+||+||++++| .++++||||||+|||++|+| |+++.++||. -..+.
T Consensus 20 ~~~i~~~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L----~~~a~~~lg~-----------~~~~~---------- 74 (275)
T 1wxi_A 20 EEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKL----CQMAINELRL-----------ETGNE---------- 74 (275)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHH----HHHHHHHHHH-----------HHCCT----------
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHH----HHHHHHHhcc-----------ccccc----------
Confidence 4444447899999999999 99999999999999998877 4555655431 00000
Q ss_pred hhcceEEEEEECCCCCCHHHHHHHHHHHHHhCC-cEEEEechHHHHHHHHHhhHhhCCC
Q 027416 156 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKR 213 (223)
Q Consensus 156 l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~-~~~~i~I~~~v~~~~~~~~~~~g~~ 213 (223)
+..+++++|+. .+..+.++|+++|+.||+ +|++|+|+++++.+.+.+.. .|.+
T Consensus 75 --~~~v~av~~~~--~~~~~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~-~g~~ 128 (275)
T 1wxi_A 75 --SLQFIAVRLPY--GVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALRE-AGIE 128 (275)
T ss_dssp --TCEEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH-HTCC
T ss_pred --cceEEEEEeCC--CCccCHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHh-cCCC
Confidence 01388999994 344579999999999999 99999999999999887776 4543
No 6
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.70 E-value=8.1e-17 Score=141.31 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=79.9
Q ss_pred HHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHh
Q 027416 76 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESRE 155 (223)
Q Consensus 76 ~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (223)
.++....+.+||+|||+++|.++++||||||+|||+++++ |++++++||. +. . |.
T Consensus 20 ~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l----~~~A~~~Lg~--------------~~-~--~~---- 74 (279)
T 3q4g_A 20 PQFEIERRVAFIKRKLTEARYKSLVLGISGGVDSTTCGRL----AQLAVEELNQ--------------QH-N--TT---- 74 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHH----HHHHHHHHHH--------------HT-T--CS----
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHH----HHHHHHHhCc--------------cc-c--cC----
Confidence 4455556679999999999999999999999999998877 5666777542 10 0 00
Q ss_pred hhcceEEEEEECCCCCCHHHHHHHHHHHHHhCC-cEEEEechHHHHHHHH
Q 027416 156 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLS 204 (223)
Q Consensus 156 l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~-~~~~i~I~~~v~~~~~ 204 (223)
+..+++++||. +++.+.++|+++|+.||+ +|++|+|+++++++..
T Consensus 75 --~~~v~av~~p~--~~~~~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~ 120 (279)
T 3q4g_A 75 --EYQFIAVRLPY--GEQKDEDEAQLALSFIRPTHSVSVNIKAGVDGLHA 120 (279)
T ss_dssp --CCEEEEEECCS--SSCSCHHHHHHHHHHHCCSEEEECCCHHHHHHHHH
T ss_pred --CceEEEEEecC--CChHHHHHHHHHHHHhCCCeEEEEECHHHHHHHHH
Confidence 02489999993 455678999999999999 9999999999999877
No 7
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.69 E-value=1.8e-16 Score=138.26 Aligned_cols=108 Identities=27% Similarity=0.356 Sum_probs=84.6
Q ss_pred HHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHh
Q 027416 76 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESRE 155 (223)
Q Consensus 76 ~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (223)
.++....+.+||+||+++++.++++||||||+|||++|+|+ +++.+++| .++..
T Consensus 18 ~~~~i~~~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La----~~a~~~lg--------------~~~~~-------- 71 (271)
T 1kqp_A 18 PKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLA----QLAVESIR--------------EEGGD-------- 71 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH----HHHHHHHH--------------HTTCC--------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHH----HHHHHHhc--------------ccCCC--------
Confidence 34455557899999999999999999999999999988774 44555543 11000
Q ss_pred hhcceEEEEEECCCCCCHHHHHHHHHHHHHhCC-cEEEEechHHHHHHHHHhhHhhCCCC
Q 027416 156 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRP 214 (223)
Q Consensus 156 l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~-~~~~i~I~~~v~~~~~~~~~~~g~~p 214 (223)
..+++++|+. .+..+.++|+++|+.||+ +|++++|+++++.+.+.+...+|.++
T Consensus 72 ---~~v~av~~~~--~~~~d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~ 126 (271)
T 1kqp_A 72 ---AQFIAVRLPH--GTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQL 126 (271)
T ss_dssp ---CEEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCC
T ss_pred ---ceEEEEEeCC--CCCCCHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCCC
Confidence 1388999984 334569999999999999 99999999999999988887766654
No 8
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.65 E-value=8.1e-16 Score=132.74 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=82.9
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCch
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTES 153 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~ 153 (223)
...+++...+..||+||++++|.++++|+||||+||+++++++ .++ ++ .
T Consensus 4 ~~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~--------------~g-~--------- 52 (249)
T 3p52_A 4 MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------KRA--------------LK-E--------- 52 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHH-------HHH--------------HT-T---------
T ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHH-------HHH--------------cC-C---------
Confidence 4678999999999999999999999999999999999998886 333 22 1
Q ss_pred HhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHH
Q 027416 154 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLS 204 (223)
Q Consensus 154 ~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~ 204 (223)
.+++++|+...++..+.+.|+++|+.+|++|+.++|+++++.+..
T Consensus 53 ------~v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~ 97 (249)
T 3p52_A 53 ------NVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIK 97 (249)
T ss_dssp ------SEEEEECCSCCSSCHHHHHHHHHHHHHTCEEEECCCHHHHHHHHT
T ss_pred ------cEEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHH
Confidence 389999999888889999999999999999999999998887765
No 9
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.65 E-value=1.3e-15 Score=134.05 Aligned_cols=103 Identities=22% Similarity=0.318 Sum_probs=80.7
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchH
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESR 154 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~ 154 (223)
..++.......||+||++++|.++++||||||+||+++++| |.+|+++||. ++ .+
T Consensus 25 ~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~L----a~~A~daLG~--------------~~---~~---- 79 (285)
T 3dpi_A 25 DARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRL----AQLAVERLRA--------------SG---YD---- 79 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHH----HHHHHHHHHH--------------TT---CC----
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHH----HHHHHHHhcc--------------cC---cc----
Confidence 34556666779999999999999999999999999999877 4566777542 10 00
Q ss_pred hhhcceEEEEEECCCCCCHHHHHHHHHHHHHhC-CcEEEEechHHHHHHHHHhhH
Q 027416 155 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIG-SWHLDVSIDTVVSAFLSLFQT 208 (223)
Q Consensus 155 ~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG-~~~~~i~I~~~v~~~~~~~~~ 208 (223)
..+++++||. +++.+.+.|+++|+.+| ++|++|+|+++++++.+.+..
T Consensus 80 ----~~viav~~p~--~~~~~~~dA~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~ 128 (285)
T 3dpi_A 80 ----ARFVAMRLPY--GAQHDEADARRALAFVRADETLTVDVKPAADAMLAALAA 128 (285)
T ss_dssp ----CEEEEEECCS--CC---CHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH
T ss_pred ----cEEEEEEcCC--CCHHHHHHHHHHHHHcCCCcEEEEEChHHHHHHHHHHHh
Confidence 1378888884 56778899999999999 699999999999999887764
No 10
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.62 E-value=3.5e-15 Score=129.44 Aligned_cols=95 Identities=22% Similarity=0.187 Sum_probs=82.6
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchH
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESR 154 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~ 154 (223)
.++++...+..||++|+++++.++++|+||||+||+++++++ .++ .+ .
T Consensus 4 ~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~-------~~~--------------~~-~---------- 51 (268)
T 1xng_A 4 DYQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------QKV--------------FK-E---------- 51 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHH--------------HG-G----------
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHH-------HHh--------------CC-C----------
Confidence 478999999999999999999999999999999999998886 333 11 1
Q ss_pred hhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHh
Q 027416 155 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF 206 (223)
Q Consensus 155 ~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~ 206 (223)
.+++++|++..++..+.++|+++|+.+|++|+.++|++.++.+.+.+
T Consensus 52 -----~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~ 98 (268)
T 1xng_A 52 -----NAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHF 98 (268)
T ss_dssp -----GEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHHHHHHHHHHC
T ss_pred -----CEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHh
Confidence 28999999988889999999999999999999999999887766543
No 11
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.62 E-value=2.4e-15 Score=129.68 Aligned_cols=100 Identities=29% Similarity=0.369 Sum_probs=85.2
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCch
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTES 153 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~ 153 (223)
...+++...+..||+||+++++.++++|+||||+||+++++++ .++ +.+
T Consensus 7 ~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~-------~~~---------------~~~--------- 55 (249)
T 3fiu_A 7 FSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLA-------VKT---------------GLP--------- 55 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHH-------HHT---------------TSC---------
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH-------HHh---------------CCC---------
Confidence 3567889999999999999999999999999999999998886 322 111
Q ss_pred HhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhC
Q 027416 154 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 211 (223)
Q Consensus 154 ~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g 211 (223)
.+ +++|++..++..+.+.|+++|+.+|++|+.++|++.++.+.+.+...++
T Consensus 56 ------~~-av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~ 106 (249)
T 3fiu_A 56 ------TT-ALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLASTQSFTN 106 (249)
T ss_dssp ------EE-EEECCCTTSCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC-
T ss_pred ------CE-EEEecCCCCCHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHHHhhcc
Confidence 25 9999987788999999999999999999999999999998877765543
No 12
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.45 E-value=5.8e-13 Score=114.54 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=74.2
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchH
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESR 154 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~ 154 (223)
..+++...+..||++| +.++++|+||||+||+++++++ .+++ +..
T Consensus 5 ~~~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~-------~~~~--------------g~~---------- 49 (257)
T 2e18_A 5 DYDKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLA-------TKAL--------------GKE---------- 49 (257)
T ss_dssp CHHHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHH-------HHHH--------------CGG----------
T ss_pred CHHHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHH-------HHhc--------------CCC----------
Confidence 3577888999999999 7789999999999999998886 3331 111
Q ss_pred hhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHh
Q 027416 155 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF 206 (223)
Q Consensus 155 ~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~ 206 (223)
.+++++|+... + .+.+.|+++|+.+|++|++++|++.++.+.+.+
T Consensus 50 -----~v~av~~~~~~-~-~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l 94 (257)
T 2e18_A 50 -----KVLGLIMPYFE-N-KDVEDAKLVAEKLGIGYKVINIKPIVDSFVENL 94 (257)
T ss_dssp -----GEEEEECCSSC-S-THHHHHHHHHHHHTCEEEECCCHHHHHHHHHHH
T ss_pred -----cEEEEEeCCCC-c-hHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHh
Confidence 38999999864 4 889999999999999999999999877766554
No 13
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.93 E-value=3e-09 Score=103.58 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=70.5
Q ss_pred HHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHh
Q 027416 76 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESRE 155 (223)
Q Consensus 76 ~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (223)
.+++...+..+|.+|+. .++++++||||+||+++|+|+ .++ ++..
T Consensus 223 ~~~~~~~~i~~Ir~~v~---~~~vvv~lSGGvDSsVla~Ll-------~~a--------------lG~~----------- 267 (697)
T 2vxo_A 223 VQNRELECIREIKERVG---TSKVLVLLSGGVDSTVCTALL-------NRA--------------LNQE----------- 267 (697)
T ss_dssp HHHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHH-------HHH--------------SCGG-----------
T ss_pred hhHHHHHHHHHHHHHhc---ccceEEEccCchHHHHHHHHH-------HHh--------------cCCc-----------
Confidence 45677778888888874 378999999999999999886 444 2212
Q ss_pred hhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHH
Q 027416 156 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSA 201 (223)
Q Consensus 156 l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~ 201 (223)
.+++++|+...++..+.+.|+++|+.+|++|+.+++++.+..
T Consensus 268 ----~V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~vvdi~~~f~~ 309 (697)
T 2vxo_A 268 ----QVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYN 309 (697)
T ss_dssp ----GEEEEEEECSCCCSSTTHHHHHHHHHTTCCEEEEECHHHHHT
T ss_pred ----eEEEEEeccccCCcchHHHHHHHHHHhCCcEEEecchHHHHh
Confidence 289999998776677889999999999999999999986643
No 14
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.81 E-value=1.3e-08 Score=96.09 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=65.4
Q ss_pred HHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHh
Q 027416 76 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESRE 155 (223)
Q Consensus 76 ~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (223)
.+++......+|++++.. ++++++||||+||+++|+++ .+++ + .
T Consensus 210 ~~~~~~~~~~~ir~~v~~---~~vvvalSGGvDSsv~a~ll-------~~a~--------------G-~----------- 253 (525)
T 1gpm_A 210 PAKIIDDAVARIREQVGD---DKVILGLSGGVDSSVTAMLL-------HRAI--------------G-K----------- 253 (525)
T ss_dssp HHHHHHHHHHHHHHHHTT---CEEEEECCSSHHHHHHHHHH-------HHHH--------------G-G-----------
T ss_pred HHHHHHhhhhhhhhhhcc---cceEEEecCCCCHHHHHHHH-------HHHh--------------C-C-----------
Confidence 456666777788877743 68999999999999998886 3442 2 1
Q ss_pred hhcceEEEEEECCCCCCHHHHHHHHH-HHHHhCCcEEEEechHHH
Q 027416 156 FAKRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 156 l~~~~~~t~~m~~~~ss~~t~~~A~~-LA~~lG~~~~~i~I~~~v 199 (223)
.+++++++....+..+.+.|.+ +|+.+|++|+.+++++.+
T Consensus 254 ----~v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~f 294 (525)
T 1gpm_A 254 ----NLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRF 294 (525)
T ss_dssp ----GEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHHH
T ss_pred ----CEEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHHH
Confidence 2889999976655667778866 899999999999999754
No 15
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.78 E-value=3.4e-08 Score=87.26 Aligned_cols=82 Identities=23% Similarity=0.203 Sum_probs=62.4
Q ss_pred HHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhh
Q 027416 77 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREF 156 (223)
Q Consensus 77 eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l 156 (223)
+.+......+|.+++. .++++|++|||+||+++|.++ .+.+ +.
T Consensus 4 ~~~~~~~~~~ir~~v~---~~kvlvalSGGvDSsvla~ll-------~~~~--------------g~------------- 46 (308)
T 2dpl_A 4 GRFVEEKVREIRETVG---DSKAIIALSGGVDSSTAAVLA-------HKAI--------------GD------------- 46 (308)
T ss_dssp HHHHHHHHHHHHHHHT---TSCEEEECCSSHHHHHHHHHH-------HHHH--------------GG-------------
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEEeChHHHHHHHHHH-------HHhh--------------CC-------------
Confidence 4567778889999885 368999999999999998886 3332 21
Q ss_pred hcceEEEEEECCCCCCHHHHHHHHH-HHHHhCCcEEEEechHH
Q 027416 157 AKRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTV 198 (223)
Q Consensus 157 ~~~~~~t~~m~~~~ss~~t~~~A~~-LA~~lG~~~~~i~I~~~ 198 (223)
.++++++........+...+++ +++.+|++|+.+++++.
T Consensus 47 ---~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~ 86 (308)
T 2dpl_A 47 ---RLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYVDAQDR 86 (308)
T ss_dssp ---GEEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEEECHHH
T ss_pred ---CEEEEEEcCCCCChHHHHHHHHHHHHHcCCcEEEEECCHH
Confidence 2788888765444456667777 66799999999999864
No 16
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.73 E-value=3.1e-08 Score=89.87 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=54.7
Q ss_pred HHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCC
Q 027416 90 YLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE 169 (223)
Q Consensus 90 ylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~ 169 (223)
+|++....+++|++|||+||+++|.++ .+ .+. .+++++|...
T Consensus 3 ~~~~~~~~kVlVa~SGGvDSsv~a~lL-------~~---------------~G~----------------~V~~v~~~~~ 44 (376)
T 2hma_A 3 AMSDNSKTRVVVGMSGGVDSSVTALLL-------KE---------------QGY----------------DVIGIFMKNW 44 (376)
T ss_dssp --CCGGGSEEEEECCSSHHHHHHHHHH-------HH---------------TTC----------------EEEEEEEECC
T ss_pred hhhhCCCCeEEEEEeCHHHHHHHHHHH-------HH---------------cCC----------------cEEEEEEECC
Confidence 455555678999999999999998875 22 221 3788888753
Q ss_pred C--------CCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 170 N--------SSQETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 170 ~--------ss~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
. ++..+.+.|+++|+.+|++|+.+++++.+
T Consensus 45 ~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~ 82 (376)
T 2hma_A 45 DDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEY 82 (376)
T ss_dssp CCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHH
T ss_pred CcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHH
Confidence 1 24578899999999999999999998755
No 17
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.68 E-value=5.9e-08 Score=81.57 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=50.9
Q ss_pred CCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHH
Q 027416 95 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 174 (223)
Q Consensus 95 ~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~ 174 (223)
|+++++|++|||+||++++.++ .+. + . .++++++........
T Consensus 1 ~~~kvvv~lSGG~DS~~~l~ll-------~~~---------------~-~---------------~v~av~~~~g~~~~~ 42 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQA-------LQD---------------Y-D---------------DVHCITFDYGQRHRA 42 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHH-------HHH---------------C-S---------------EEEEEEEESSSSCHH
T ss_pred CCCCEEEEecCcHHHHHHHHHH-------HHc---------------C-C---------------CEEEEEEECCCCCHH
Confidence 3568999999999999988775 222 1 1 277888776544567
Q ss_pred HHHHHHHHHHHhCCc-EEEEechH
Q 027416 175 TRMRAKKLADEIGSW-HLDVSIDT 197 (223)
Q Consensus 175 t~~~A~~LA~~lG~~-~~~i~I~~ 197 (223)
+.+.|+++|+.+|++ |+.++++.
T Consensus 43 e~~~a~~~a~~lgi~~~~vi~~~~ 66 (232)
T 2pg3_A 43 EIEVAQELSQKLGAAAHKVLDVGL 66 (232)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTH
T ss_pred HHHHHHHHHHHhCCCceEEEeChh
Confidence 889999999999999 99999984
No 18
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.65 E-value=1e-07 Score=89.60 Aligned_cols=84 Identities=29% Similarity=0.301 Sum_probs=66.1
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCC--CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCC
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPT 151 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~--~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~ 151 (223)
...+|....+...|.+.+++... ..+.+.||||+|||++++++ .+. . .
T Consensus 217 ~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala-------~~~---------------~-~------- 266 (513)
T 1jgt_A 217 LPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACA-------HRA---------------A-G------- 266 (513)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHH-------HHH---------------H-S-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHH-------HHh---------------C-C-------
Confidence 45778888899999999988643 36889999999999998886 222 1 1
Q ss_pred chHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 027416 152 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 152 ~~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
.+.+++++.++ ..+...|+++|+.+|++|+++++++
T Consensus 267 --------~v~tfti~~~~--~~E~~~A~~vA~~lg~~h~~i~i~~ 302 (513)
T 1jgt_A 267 --------ELDTVSMGTDT--SNEFREARAVVDHLRTRHREITIPT 302 (513)
T ss_dssp --------SCEEEEEECSS--CCCHHHHHHHHHHHTCEEEEEECCH
T ss_pred --------CceEEEcCCCC--CCHHHHHHHHHHHhCCCcEEEECCH
Confidence 15666666554 3678899999999999999999986
No 19
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.64 E-value=1.8e-07 Score=87.77 Aligned_cols=83 Identities=22% Similarity=0.177 Sum_probs=65.1
Q ss_pred HHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHh
Q 027416 76 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESRE 155 (223)
Q Consensus 76 ~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (223)
.+.+......+|.+++. ..+++|++|||+||+++|.++ .++ +
T Consensus 192 ~~~~~~~~i~~ir~~~~---~~kvvvalSGGvDSsvla~ll-------~~~---------------g------------- 233 (503)
T 2ywb_A 192 PEHVLEELLREVRERAG---KDRVLLAVSGGVDSSTLALLL-------AKA---------------G------------- 233 (503)
T ss_dssp HHHHHHHHHHHHHHHHT---TSEEEEEECSSHHHHHHHHHH-------HHH---------------T-------------
T ss_pred chhhhHHHHHhhhhhcc---CccEEEEecCCcchHHHHHHH-------HHc---------------C-------------
Confidence 44566666677777763 368999999999999998886 222 1
Q ss_pred hhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 156 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 156 l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
..++++++.+......+.+.++++|+.+|++|+.+++++.+
T Consensus 234 ---~~v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~~~~~f 274 (503)
T 2ywb_A 234 ---VDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERF 274 (503)
T ss_dssp ---CEEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHHHH
T ss_pred ---CeEEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEECcHHH
Confidence 13889999876556778999999999999999999998743
No 20
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=98.63 E-value=7e-08 Score=79.68 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=50.1
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
++++|++|||+||++++.++ .+. + . .++++++........+.
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll-------~~~---------------~-~---------------~v~~~~~~~~~~~~~e~ 45 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWA-------LKE---------------F-E---------------EVETVTFHYNQRHSQEV 45 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH---------------C-S---------------EEEEEEEESSCTTCHHH
T ss_pred CCEEEEccCcHHHHHHHHHH-------HHc---------------C-C---------------ceEEEEEeCCCCCHHHH
Confidence 57999999999999988775 221 1 1 27788887654445788
Q ss_pred HHHHHHHHHhCCcEEEEechH
Q 027416 177 MRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~ 197 (223)
+.|+++|+.+|++|+.++++.
T Consensus 46 ~~a~~~a~~lgi~~~~~~~~~ 66 (219)
T 3bl5_A 46 EVAKSIAEKLGVKNHLLDMSL 66 (219)
T ss_dssp HHHHHHHHTTCCCEEEEECGG
T ss_pred HHHHHHHHHhCCCeEEEeChH
Confidence 999999999999999999986
No 21
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.59 E-value=1.7e-07 Score=89.07 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHhC-CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEE
Q 027416 88 WDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM 166 (223)
Q Consensus 88 ~dylr~s~-~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m 166 (223)
.+++|+.+ .++++++||||+||+++|+|+ .+++ + . .++++++
T Consensus 246 i~~ir~~g~~~~vvvalSGGvDSsv~a~ll-------~~~~--------------G-~---------------~v~~v~v 288 (556)
T 3uow_A 246 LKNIEKYKHDHYVIAAMSGGIDSTVAAAYT-------HKIF--------------K-E---------------RFFGIFI 288 (556)
T ss_dssp HHHHGGGTTTCEEEEECCSSHHHHHHHHHH-------HHHH--------------G-G---------------GEEEEEE
T ss_pred eeeeeecCCCceEEEEcccCCCHHHHHHHH-------HHHh--------------C-C---------------eEEEEEE
Confidence 34455555 678999999999999999887 4442 3 1 2899999
Q ss_pred CCCCCCHHHHHHH-HHHHHHh-CCcEEEEechHHH
Q 027416 167 GSENSSQETRMRA-KKLADEI-GSWHLDVSIDTVV 199 (223)
Q Consensus 167 ~~~~ss~~t~~~A-~~LA~~l-G~~~~~i~I~~~v 199 (223)
.+......+.+.| +.+|+.+ |++|+.+|+++.+
T Consensus 289 d~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f 323 (556)
T 3uow_A 289 DNGLLRKNEAENVYTFLKSTFPDMNITKIDASENF 323 (556)
T ss_dssp ECSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHH
T ss_pred ecCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHH
Confidence 8755555555666 6799999 9999999998764
No 22
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.51 E-value=2.9e-07 Score=86.90 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=58.6
Q ss_pred HHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhh
Q 027416 78 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFA 157 (223)
Q Consensus 78 Ei~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~ 157 (223)
.+.......|.+++ +.++++|++|||+||+++|.++ .+.+ +.
T Consensus 215 ~~~~~~i~~i~~~v---~~~kvlvalSGGvDSsvla~ll-------~~~~--------------G~-------------- 256 (527)
T 3tqi_A 215 HIIEDSIRDIQEKV---GKEQVIVGLSGGVDSAVTATLV-------HKAI--------------GD-------------- 256 (527)
T ss_dssp HHHHHHHHHHHHHH---TTSCEEEECTTTHHHHHHHHHH-------HHHH--------------GG--------------
T ss_pred HHHHHHHHHHHHhc---CCCeEEEEEecCcCHHHHHHHH-------HHHh--------------CC--------------
Confidence 34444445555555 3478999999999999998886 3332 21
Q ss_pred cceEEEEEECCCCCCHHHHHHHHH-HHHHhCCcEEEEechHHH
Q 027416 158 KRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 158 ~~~~~t~~m~~~~ss~~t~~~A~~-LA~~lG~~~~~i~I~~~v 199 (223)
.++++++.....+..+.+.+.+ +|+.+|++|+.+++++.+
T Consensus 257 --~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~~ 297 (527)
T 3tqi_A 257 --QLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRF 297 (527)
T ss_dssp --GEEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHHH
T ss_pred --eEEEEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHHH
Confidence 2888998765444556666655 999999999999998663
No 23
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.50 E-value=3.8e-07 Score=82.84 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=51.6
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCC-----
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN----- 170 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~----- 170 (223)
..+++|++|||+||+++|.++ .+ .+. .+++++|..-.
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL-------~~---------------~G~----------------~V~~v~~~~~~~~~~~ 58 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLL-------QQ---------------QGY----------------QVEGLFMKNWEEDDGE 58 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHH-------HT---------------TCC----------------EEEEEEEECCCCCSHH
T ss_pred CCEEEEEEEChHHHHHHHHHH-------HH---------------cCC----------------eEEEEEEEcCcccccc
Confidence 357999999999999998875 21 121 38889996422
Q ss_pred ---CCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 027416 171 ---SSQETRMRAKKLADEIGSWHLDVSIDTVV 199 (223)
Q Consensus 171 ---ss~~t~~~A~~LA~~lG~~~~~i~I~~~v 199 (223)
++..+.+.|+++|+.+|++|+.+++++.+
T Consensus 59 ~~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f 90 (380)
T 2der_A 59 EYCTAAADLADAQAVCDKLGIELHTVNFAAEY 90 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 24577899999999999999999998654
No 24
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.45 E-value=6.9e-07 Score=83.77 Aligned_cols=84 Identities=25% Similarity=0.271 Sum_probs=64.6
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCC--CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCC
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPT 151 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~--~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~ 151 (223)
...+|....+...|.+.+++.-. ..+.+.||||+||+++++++ .+. +
T Consensus 214 ~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala-------~~~---------------~--------- 262 (503)
T 1q15_A 214 LPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALA-------SRH---------------F--------- 262 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHH-------TTT---------------C---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHH-------HHh---------------C---------
Confidence 45778888888889998887543 35778899999999998876 111 1
Q ss_pred chHhhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 027416 152 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 152 ~~~~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
..+.+++++..+ ..+...|+++|+.+|++|+++++++
T Consensus 263 -------~~~~~~t~~~~~--~~E~~~A~~vA~~lg~~h~~i~~~~ 299 (503)
T 1q15_A 263 -------KKLNTYSIGTEL--SNEFEFSQQVADALGTHHQMKILSE 299 (503)
T ss_dssp -------SEEEEEEEEETT--BCCHHHHHHHHHHHTCEEEEEEECH
T ss_pred -------CCcEEEEEeCCC--ccHHHHHHHHHHHhCCceEEEECCH
Confidence 026666666543 3678899999999999999999986
No 25
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.42 E-value=7.7e-07 Score=84.40 Aligned_cols=94 Identities=23% Similarity=0.237 Sum_probs=58.6
Q ss_pred HHHhhHHHHHHHHHHHhCCC--CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHh
Q 027416 78 EIAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESRE 155 (223)
Q Consensus 78 Ei~~~~~~~L~dylr~s~~~--g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (223)
+....+...|.+.+++.-.. .+.+.||||+|||++|+++ .+... +....+. +. ..+.|
T Consensus 206 ~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala-------~~~~~---~~~~~~~--~~---~a~~~----- 265 (553)
T 1ct9_A 206 TDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAIT-------KKYAA---RRVEDQE--RS---EAWWP----- 265 (553)
T ss_dssp CCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHH-------HHHC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHHHHHHHH-------HHhhc---ccccccc--cc---ccccC-----
Confidence 34455556666666665433 5778899999999999886 22210 0000000 00 00001
Q ss_pred hhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 027416 156 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 156 l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
.+.+++++.+++ .+...|+++|+.+|+.|+++++++
T Consensus 266 ----~l~tfsig~~~~--~E~~~A~~vA~~lg~~h~~i~~~~ 301 (553)
T 1ct9_A 266 ----QLHSFAVGLPGS--PDLKAAQEVANHLGTVHHEIHFTV 301 (553)
T ss_dssp -----CEEEEEESTTC--HHHHHHHHHHHHHTCEEEEEECCH
T ss_pred ----ceeEEEecCCCC--cHHHHHHHHHHHhCCCCEEEECCH
Confidence 167788776544 688999999999999999999974
No 26
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.42 E-value=4e-07 Score=83.75 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=50.2
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t 175 (223)
..+++|++|||+|||+++.++ .+. +. .++++++-... ..+
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~L-------ke~---------------G~----------------eViavt~d~Gq--~~E 53 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWL-------CEK---------------GF----------------DVIAYVANVGQ--KDD 53 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHH-------HHT---------------TC----------------EEEEEEEESSC--CCC
T ss_pred cCCEEEEeCCcHHHHHHHHHH-------HHC---------------CC----------------eEEEEEEEcCC--HHH
Confidence 356999999999999998775 221 21 37888887532 267
Q ss_pred HHHHHHHHHHhCC-cEEEEechHHH
Q 027416 176 RMRAKKLADEIGS-WHLDVSIDTVV 199 (223)
Q Consensus 176 ~~~A~~LA~~lG~-~~~~i~I~~~v 199 (223)
.+.|+++|+.+|+ +|+.+|+.+.+
T Consensus 54 le~A~~vA~~lGi~~~~VvDl~eef 78 (421)
T 1vl2_A 54 FVAIKEKALKTGASKVYVEDLRREF 78 (421)
T ss_dssp HHHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHHcCCceEEEEecHHHH
Confidence 8999999999999 99999998643
No 27
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.40 E-value=4.6e-07 Score=75.10 Aligned_cols=63 Identities=22% Similarity=0.183 Sum_probs=48.4
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHH
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t 175 (223)
.++++|++|||+||++++.++ . . .+. .+.++++...... +
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll-------~-~--------------~g~----------------~v~~~~v~~~~~~--~ 45 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVIL-------K-K--------------LGY----------------NPHLITINFGVIP--S 45 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHH-------H-H--------------TTE----------------EEEEEEEECSSSC--T
T ss_pred CCeEEEEEECcHHHHHHHHHH-------H-H--------------cCC----------------CeEEEEEeCCCch--H
Confidence 457999999999999988764 1 1 221 2677777654333 7
Q ss_pred HHHHHHHHHHhCCcEEEEechHH
Q 027416 176 RMRAKKLADEIGSWHLDVSIDTV 198 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~~ 198 (223)
...|+++|+.+|++|+.++++..
T Consensus 46 ~~~~~~~a~~lgi~~~~~~~~~~ 68 (203)
T 3k32_A 46 YKLAEETAKILGFKHKVITLDRK 68 (203)
T ss_dssp THHHHHHHHHHTCEEEEEECCTH
T ss_pred HHHHHHHHHHhCCCEEEEECCHH
Confidence 78999999999999999999864
No 28
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.28 E-value=3.6e-06 Score=69.80 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=49.8
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
..++|++|||.||++++.++ .+. .. .+.++++-+....+++.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll-------~~~---------------~~----------------~v~~v~vd~g~~~~e~~ 86 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLV-------NQI---------------RP----------------DIPVILTDTGYLFPETY 86 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHH-------HHH---------------ST----------------TCEEEEEECSCBCHHHH
T ss_pred CCEEEEecCCHHHHHHHHHH-------HHh---------------CC----------------CCeEEEeeCCCCCHHHH
Confidence 57999999999999988776 221 11 15677776655568999
Q ss_pred HHHHHHHHHhCCcEEEEechH
Q 027416 177 MRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~ 197 (223)
+.++++|+.+|++++.+..+.
T Consensus 87 ~~v~~~~~~~gi~~~v~~~~~ 107 (215)
T 1sur_A 87 RFIDELTDKLKLNLKVYRATE 107 (215)
T ss_dssp HHHHHHHHHTTCEEEEEECSS
T ss_pred HHHHHHHHHhCCcEEEEeCCC
Confidence 999999999999999998764
No 29
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.25 E-value=1.7e-06 Score=79.20 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
++++|++|||+||++++.++ .+. ++. .++++++.... ..+.
T Consensus 1 ~kVvva~SGG~DSsvll~ll-------~~~--------------~g~----------------~V~av~vd~g~--~~e~ 41 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWL-------KET--------------YRA----------------EVIAFTADIGQ--GEEV 41 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH--------------HTC----------------EEEEEEEESSC--SSCH
T ss_pred CcEEEEEeChHHHHHHHHHH-------HHh--------------hCC----------------cEEEEEEeCCC--HHHH
Confidence 36899999999999988775 332 121 27788887644 4678
Q ss_pred HHHHHHHHHhCC-cEEEEechHHH
Q 027416 177 MRAKKLADEIGS-WHLDVSIDTVV 199 (223)
Q Consensus 177 ~~A~~LA~~lG~-~~~~i~I~~~v 199 (223)
+.++++|+.+|+ +++.+++++.+
T Consensus 42 e~a~~~A~~lGi~~~~vvd~~~ef 65 (400)
T 1kor_A 42 EEAREKALRTGASKAIALDLKEEF 65 (400)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeCcHHH
Confidence 999999999999 79999998544
No 30
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.23 E-value=3.5e-06 Score=77.12 Aligned_cols=67 Identities=25% Similarity=0.260 Sum_probs=52.3
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCC-CCCHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-NSSQET 175 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~-~ss~~t 175 (223)
.+++|++|||+||++++.++ .+ .+. .+.++++... ..++.+
T Consensus 188 ~kvlvalSGGvDS~vll~ll-------~~---------------~G~----------------~v~av~v~~~~~~~~~~ 229 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLT-------MK---------------RGV----------------SVEAVHFHSPPFTSERA 229 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHH-------HH---------------BTE----------------EEEEEEEECTTTSCHHH
T ss_pred CeEEEEeCCCChHHHHHHHH-------HH---------------cCC----------------cEEEEEEeCCCCCCHHH
Confidence 35899999999999988775 21 121 2778888753 456788
Q ss_pred HHHHHHHHHHh-----CCcEEEEechHHHHH
Q 027416 176 RMRAKKLADEI-----GSWHLDVSIDTVVSA 201 (223)
Q Consensus 176 ~~~A~~LA~~l-----G~~~~~i~I~~~v~~ 201 (223)
.+.++++|+.+ |++++.+++++....
T Consensus 230 ~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~~ 260 (413)
T 2c5s_A 230 KQKVIDLAQELTKYCKRVTLHLVPFTEVQKT 260 (413)
T ss_dssp HHHHHHHHHHHGGGSSCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcHHHHH
Confidence 88999999999 999999999987643
No 31
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.17 E-value=3.9e-06 Score=73.94 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=48.9
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcce-EEEEEECCCC--CC
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRI-FYTVFMGSEN--SS 172 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~-~~t~~m~~~~--ss 172 (223)
.++++|++|||+||++++.++ .+. . + .++ .. +.++++.... .+
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll-------~~~-~---~-------~~g----------------~~~v~av~vd~g~r~~s 69 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVL-------LKL-K---N-------YFS----------------LKEVALAHFNHMLRESA 69 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHH-------HHS-T---T-------TTT----------------CSEEEEEEEECCSSTHH
T ss_pred CCEEEEEecchHHHHHHHHHH-------HHH-H---H-------HcC----------------CCEEEEEEEECCCCccc
Confidence 357999999999999988775 211 0 0 011 12 6677776432 24
Q ss_pred HHHHHHHHHHHHHhCCcEEEEechH
Q 027416 173 QETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 173 ~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
..+...++++|+.+|++|+.++++.
T Consensus 70 ~~~~~~v~~~a~~lgi~~~v~~~~~ 94 (317)
T 1wy5_A 70 ERDEEFCKEFAKERNMKIFVGKEDV 94 (317)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEec
Confidence 6788899999999999999999873
No 32
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.14 E-value=2.3e-06 Score=79.40 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
++++|++|||+||++++.++ .+ .+. .++++++-.......+.
T Consensus 11 ~KVvVA~SGGlDSSvll~~L-------~e---------------~G~----------------eViavtvd~Gq~~~~el 52 (455)
T 1k92_A 11 QRIGIAFSGGLDTSAALLWM-------RQ---------------KGA----------------VPYAYTANLGQPDEEDY 52 (455)
T ss_dssp SEEEEECCSSHHHHHHHHHH-------HH---------------TTC----------------EEEEEEEECCCTTCSCT
T ss_pred CeEEEEEcChHHHHHHHHHH-------HH---------------cCC----------------EEEEEEEEcCCCCHHHH
Confidence 57999999999999988775 22 111 27777776433234578
Q ss_pred HHHHHHHHHhCC-cEEEEechHHH
Q 027416 177 MRAKKLADEIGS-WHLDVSIDTVV 199 (223)
Q Consensus 177 ~~A~~LA~~lG~-~~~~i~I~~~v 199 (223)
+.|+++|+.+|+ +|+.+|+++.+
T Consensus 53 e~a~~~A~~lGi~~~~vvD~~eef 76 (455)
T 1k92_A 53 DAIPRRAMEYGAENARLIDCRKQL 76 (455)
T ss_dssp THHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeChHHH
Confidence 899999999999 89999997544
No 33
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.06 E-value=5.8e-06 Score=75.91 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=48.3
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
++++|++|||+||++++.++ .+ .+ ..++++++..... .+.
T Consensus 6 ~kVvvalSGGlDSsvll~lL-------~e---------------~G----------------~eV~av~vd~g~~--~e~ 45 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWL-------KE---------------QG----------------YDVIAYLANIGQK--EDF 45 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHH-------HH---------------TT----------------EEEEEEEEESSCC--CCH
T ss_pred CeEEEEEcChHHHHHHHHHH-------HH---------------cC----------------CEEEEEEEECCcH--HHH
Confidence 57999999999999988775 22 11 1277888875432 568
Q ss_pred HHHHHHHHHhCCc-EEEEechHHH
Q 027416 177 MRAKKLADEIGSW-HLDVSIDTVV 199 (223)
Q Consensus 177 ~~A~~LA~~lG~~-~~~i~I~~~v 199 (223)
+.|+++|+.+|++ |+.+++++.+
T Consensus 46 e~a~~~A~~lGi~~~~vvd~~~ef 69 (413)
T 2nz2_A 46 EEARKKALKLGAKKVFIEDVSREF 69 (413)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCEEEEEeChHHH
Confidence 9999999999998 8889987543
No 34
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.02 E-value=5.3e-06 Score=70.89 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=40.4
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEE--ECCC-CC--
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF--MGSE-NS-- 171 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~--m~~~-~s-- 171 (223)
-++++++|||.||+++++++ .+ +|.+ +.+++ .+.. .+
T Consensus 5 MKvvvl~SGGkDSs~al~~l-------~~---~G~e----------------------------V~~L~~~~~~~~~s~~ 46 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWA-------IK---NRFS----------------------------VKFLVTMVSENEESYM 46 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHH-------HH---TTCE----------------------------EEEEEEEECC------
T ss_pred CEEEEEecCcHHHHHHHHHH-------HH---cCCe----------------------------EEEEEEEcCCCCCccc
Confidence 46899999999999988775 22 1211 33332 2211 01
Q ss_pred -CHHHHHHHHHHHHHhCCcEEEEechHH
Q 027416 172 -SQETRMRAKKLADEIGSWHLDVSIDTV 198 (223)
Q Consensus 172 -s~~t~~~A~~LA~~lG~~~~~i~I~~~ 198 (223)
.....+.|+..|+.+|++|+.+++...
T Consensus 47 ~h~~~~e~a~~~A~~LGIpl~~v~~~g~ 74 (237)
T 3rjz_A 47 YHTINANLTDLQARALGIPLVKGFTQGE 74 (237)
T ss_dssp --CCSSSHHHHHHHHHTCCEEEEEC---
T ss_pred cCCccHHHHHHHHHHcCCCEEEEECCCC
Confidence 113356789999999999999999854
No 35
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=97.99 E-value=2e-05 Score=73.07 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=48.3
Q ss_pred CCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCC---C
Q 027416 96 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS---S 172 (223)
Q Consensus 96 ~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~s---s 172 (223)
..+++|++|||+||++++.++..+. +. .+. .+.++++..... +
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~----~~--------------~~~----------------~v~avhvdhglrg~~s 63 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLR----DE--------------WKL----------------QVIAAHVDHMFRGRES 63 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHH----HT--------------TTC----------------BCEEEEEECTTCTHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHH----HH--------------cCC----------------eEEEEEEECCCCcccc
Confidence 3579999999999999887762211 11 111 266777764333 3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEech
Q 027416 173 QETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 173 ~~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
..+...++++|+.+|++|+.++++
T Consensus 64 ~~~~~~v~~~~~~lgi~~~v~~~~ 87 (464)
T 3a2k_A 64 EEEMEFVKRFCVERRILCETAQID 87 (464)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCcEEEEEec
Confidence 567888999999999999999886
No 36
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.92 E-value=3.7e-05 Score=65.62 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=50.1
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
..++|++|||.||++++.++ .+. .. .+..+++-+....++|.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll-------~~~---------------~~----------------~v~vv~idtg~~~~et~ 87 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLV-------NQI---------------RP----------------DIPVILTDTGYLFPETY 87 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHH-------HHH---------------ST----------------TCEEEECCCSCBCHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHH-------HHh---------------CC----------------CCeEEEecCCCCCHHHH
Confidence 47999999999999988775 221 11 16678887766678999
Q ss_pred HHHHHHHHHhCCcEEEEechH
Q 027416 177 MRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~ 197 (223)
+.++++++.+|++++.+..+.
T Consensus 88 ~~~~~~~~~~gi~~~v~~~~~ 108 (252)
T 2o8v_A 88 RFIDELTDKLKLNLKVYRATE 108 (252)
T ss_dssp HHHHHHHHHTTCEEEECCCSS
T ss_pred HHHHHHHHHhCCceEEEcCCC
Confidence 999999999999999887664
No 37
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=97.81 E-value=6.8e-05 Score=68.90 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEE
Q 027416 85 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 164 (223)
Q Consensus 85 ~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~ 164 (223)
.-|.+++.. ..+++|++|||+||++++.++ .+.... ..+ -.+.++
T Consensus 4 ~~l~~~l~~--~~~vlVa~SGG~DS~~Ll~ll-------~~~~~~----------~~g----------------~~v~av 48 (433)
T 1ni5_A 4 LTLNRQLLT--SRQILVAFSGGLDSTVLLHQL-------VQWRTE----------NPG----------------VALRAI 48 (433)
T ss_dssp HHHHHHHTT--CSEEEEECCSBHHHHHHHHHH-------HHHHTT----------STT----------------CEEEEE
T ss_pred hhHHHhcCC--CCEEEEEEcchHHHHHHHHHH-------HHHHHh----------cCC----------------CeEEEE
Confidence 345666554 357999999999999988776 211000 001 137778
Q ss_pred EECCC--CCCHHHHHHHHHHHHHhCCcEEEEechH
Q 027416 165 FMGSE--NSSQETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 165 ~m~~~--~ss~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
++... ..+..+...++++|+.+|++|+.++++.
T Consensus 49 hvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~ 83 (433)
T 1ni5_A 49 HVHHGLSANADAWVTHCENVCQQWQVPLVVERVQL 83 (433)
T ss_dssp EECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred EEECCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 87643 2345678899999999999999988763
No 38
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.59 E-value=0.00039 Score=61.69 Aligned_cols=76 Identities=13% Similarity=0.028 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEE
Q 027416 86 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 165 (223)
Q Consensus 86 ~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~ 165 (223)
-|...+... .+++|++|||.||++++.|+ .+.+.. .. ..+..++
T Consensus 38 ilr~~~~~~--~~ivVa~SGGkDS~vLL~Ll-------~~~~~~-----------~~----------------~~i~vv~ 81 (325)
T 1zun_A 38 IIREVAAEF--DNPVMLYSIGKDSAVMLHLA-------RKAFFP-----------GK----------------LPFPVMH 81 (325)
T ss_dssp HHHHHHHHC--SSEEEECCSSHHHHHHHHHH-------HHHHTT-----------SC----------------CSSCEEE
T ss_pred HHHHHHHhC--CCEEEEEcChHHHHHHHHHH-------HHhccc-----------cC----------------CCEEEEE
Confidence 344444442 58999999999999988776 322110 00 0256777
Q ss_pred ECCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 027416 166 MGSENSSQETRMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 166 m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
.-+....++|.+.++++|+.+|+++..+..+.
T Consensus 82 vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~ 113 (325)
T 1zun_A 82 VDTRWKFQEMYRFRDQMVEEMGLDLITHINPD 113 (325)
T ss_dssp ECCSCCCHHHHHHHHHHHHTTTCCEEEECC--
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 77766678999999999999999999988654
No 39
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00022 Score=62.72 Aligned_cols=94 Identities=13% Similarity=0.036 Sum_probs=56.2
Q ss_pred HHHHHHHHhCC--CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccC-CCCCCCchHhhhcceEE
Q 027416 86 WLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYA-NGEFPTESREFAKRIFY 162 (223)
Q Consensus 86 ~L~dylr~s~~--~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~-~~~~p~~~~~l~~~~~~ 162 (223)
.|...+++.+. ..++|++|||.||++++.|+....... ++.++..-..+. ....+. ..+.
T Consensus 41 il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~----------~~~~~~~~~~~~~~~~~~~-------~~i~ 103 (306)
T 2wsi_A 41 LLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEY----------FFIKAQNSQFDFEFQSFPM-------QRLP 103 (306)
T ss_dssp HHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHH----------HHHHHHHC--------CCC-------CCEE
T ss_pred HHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhh----------cccccccccccccccccCC-------CCee
Confidence 33334444442 579999999999999988862221100 000000000000 000000 1378
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCcEEEEech
Q 027416 163 TVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 163 t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
.+|.-+....++|.+.++++++.+|++++.+..+
T Consensus 104 vv~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~ 137 (306)
T 2wsi_A 104 TVFIDQEETFPTLENFVLETSERYCLSLYESQRQ 137 (306)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8898887778999999999999999999888654
No 40
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00032 Score=60.09 Aligned_cols=65 Identities=8% Similarity=-0.047 Sum_probs=50.2
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
.+++|++|||.||++++.|+ .+. ... +..+..+++-+....++|.
T Consensus 42 ~~v~va~SGGkDS~vLL~ll-------~~~---------------~~~-------------~~~i~vv~iDtg~~~~et~ 86 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDML-------SKL---------------SEK-------------YYMPELLFIDTLHHFPQTL 86 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHH-------HHH---------------TTT-------------SCCCEEEEECCSCBCHHHH
T ss_pred CCEEEEecCCHHHHHHHHHH-------HHh---------------Ccc-------------CCCeeEEEecCCCCCHHHH
Confidence 37999999999999988776 222 110 0126678887766678999
Q ss_pred HHHHHHHHHhCC----cEEEEech
Q 027416 177 MRAKKLADEIGS----WHLDVSID 196 (223)
Q Consensus 177 ~~A~~LA~~lG~----~~~~i~I~ 196 (223)
+.++++++.+|+ +++.+..+
T Consensus 87 ~~v~~~~~~~gl~~~~~l~v~~~~ 110 (261)
T 2oq2_A 87 TLKNEIEKKYYQPKNQTIHVYKPD 110 (261)
T ss_dssp HHHHHHHHHHTGGGTCCCEEECST
T ss_pred HHHHHHHHHhCCCCCCCeEEEecC
Confidence 999999999999 88888765
No 41
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.42 E-value=0.00026 Score=62.28 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=47.9
Q ss_pred CeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHHH
Q 027416 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177 (223)
Q Consensus 98 g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~~ 177 (223)
+++++||| +||++++.++ .+ .|. .+++++|. .++...+
T Consensus 181 kvlvllSG-vDS~vaa~ll-------~~---------------~G~----------------~v~~v~~~---~~~~~~~ 218 (307)
T 1vbk_A 181 RMIGILHD-ELSALAIFLM-------MK---------------RGV----------------EVIPVYIG---KDDKNLE 218 (307)
T ss_dssp EEEEECSS-HHHHHHHHHH-------HH---------------BTC----------------EEEEEEES---CSSHHHH
T ss_pred cEEEEEeC-CcHHHHHHHH-------Hh---------------CCC----------------eEEEEEEE---ECHHHHH
Confidence 57889999 9999988775 22 221 38889987 3556788
Q ss_pred HHHHHHHHh-------CCcEEEEe-chHHH
Q 027416 178 RAKKLADEI-------GSWHLDVS-IDTVV 199 (223)
Q Consensus 178 ~A~~LA~~l-------G~~~~~i~-I~~~v 199 (223)
.|+++|+.| |++++.++ ..+.+
T Consensus 219 ~a~~~a~~l~~~~~~~~i~~~vv~~~~~~~ 248 (307)
T 1vbk_A 219 KVRSLWNLLKRYSYGSKGFLVVAESFDRVL 248 (307)
T ss_dssp HHHHHHHHHHTTCTTSCCCCEEESSHHHHH
T ss_pred HHHHHHHHHhhhccCCCCcEEEeCCCHHHH
Confidence 999999999 89999999 88776
No 42
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=97.06 E-value=0.0032 Score=54.18 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=49.4
Q ss_pred CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcceEEEEEECCCCCCHHHH
Q 027416 97 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 176 (223)
Q Consensus 97 ~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~t~~m~~~~ss~~t~ 176 (223)
..++|++| |.||++++.|+ .+ ++. .+..+++-+....++|.
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll-------~~---------------~~~----------------~i~vv~iDtg~~~~et~ 95 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMA-------WK---------------LNR----------------NVKVFSLDTGRLHPETY 95 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHH-------HH---------------HCT----------------TCCEEEECCSCCCHHHH
T ss_pred CCEEEEee-cHHHHHHHHHH-------HH---------------hCC----------------CceEEEEeCCCCCHHHH
Confidence 68999999 99999988775 22 111 15677777766778999
Q ss_pred HHHHHHHHHhCCcEEEEechH
Q 027416 177 MRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~ 197 (223)
+.++++++.+|++++.+..+.
T Consensus 96 ~~v~~~~~~~gi~l~v~~~~~ 116 (275)
T 2goy_A 96 RFIDQVREHYGIAIDVLSPDP 116 (275)
T ss_dssp HHHHHHHHHHTCCCEEECCCH
T ss_pred HHHHHHHHHHCCeEEEEeCCc
Confidence 999999999999999887764
No 43
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=95.80 E-value=0.034 Score=48.94 Aligned_cols=92 Identities=10% Similarity=0.075 Sum_probs=53.2
Q ss_pred HHHHHHHHhCC--CCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccC-CCCCCCchHhhhcceEE
Q 027416 86 WLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYA-NGEFPTESREFAKRIFY 162 (223)
Q Consensus 86 ~L~dylr~s~~--~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~-~~~~p~~~~~l~~~~~~ 162 (223)
.|...+.+-+. ..++++.|||.||++++.|+ .+++. +.++.+...-..++ ....|. ..+-
T Consensus 46 iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~-------~kal~---~~~~~~~~~~~~~~~~~~~p~-------~~ip 108 (308)
T 3fwk_A 46 LINETFPKWSPLNGEISFSYNGGKDCQVLLLLY-------LSCLW---EYYIVKLSQSQFDGKFHRFPL-------TKLP 108 (308)
T ss_dssp HHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHH-------HHHHH---HHHTCCE------------------------E
T ss_pred HHHHHHHHcccccCCEEEEecCChhHHHHHHHH-------HHHhh---hhcccccccccccccccccCC-------CCcc
Confidence 44444444443 56999999999999998886 22210 00000000000000 000010 1277
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 027416 163 TVFMGSENSSQETRMRAKKLADEIGSWHLDVS 194 (223)
Q Consensus 163 t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~ 194 (223)
.++.-|...-++|.+...++++.+|.+...+.
T Consensus 109 vifiDTG~~FpET~ef~d~~~~~ygL~L~v~~ 140 (308)
T 3fwk_A 109 TVFIDHDDTFKTLENFIEETSLRYSLSLYESD 140 (308)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHTTEEEEECC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCcEEEeC
Confidence 88888888889999999999999999876654
No 44
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=55.39 E-value=14 Score=30.68 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.9
Q ss_pred CCHHHHHhhHHHHHHHHHHHh---CCCCeEEeccCCc
Q 027416 74 SPEEEIAFGPGCWLWDYLRRS---GASGFLLPLSGGA 107 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s---~~~g~vl~LSGG~ 107 (223)
...+++....+..|.+.++.. ...+++|+||||-
T Consensus 7 ~~~~~l~~~aA~~l~~~l~~~~~~~~~~~~i~lsgGs 43 (266)
T 1fs5_A 7 TTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGG 43 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhcccCceEEEEcCCC
Confidence 346788888999999999873 3347999999993
No 45
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=53.60 E-value=49 Score=22.38 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhC----CCCCceecc
Q 027416 177 MRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG----KRPRYKVTM 220 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g----~~p~~~~~~ 220 (223)
..|+++-+..|+++.++||+.- ......+...+| .-|+--.+|
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~-~~~~~~l~~~~g~~~~~vP~ifi~g 68 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQD-NALRDEMRTLAGNPKATPPQIVNGN 68 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSC-HHHHHHHHHHTTCTTCCSCEEEETT
T ss_pred HHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCCCCCEEEECC
Confidence 7889999999999999999732 233334444556 456665555
No 46
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=49.22 E-value=14 Score=30.36 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=25.4
Q ss_pred CHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHH
Q 027416 75 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSV 112 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~ 112 (223)
..+++.+..+..|.+.++. ...++|+|||| ||-.
T Consensus 9 ~~~~l~~~aA~~i~~~i~~--~~~~~l~lsgG--stp~ 42 (238)
T 1y89_A 9 TADAVVKSLADDMLAYSQQ--GQPVHISLSGG--STPK 42 (238)
T ss_dssp SHHHHHHHHHHHHHHHHTT--SSCEEEEECCS--HHHH
T ss_pred CHHHHHHHHHHHHHHHHHh--CCCEEEEECCC--ccHH
Confidence 4567888888888887776 34799999999 5443
No 47
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=46.48 E-value=21 Score=28.95 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=24.9
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCC
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 106 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG 106 (223)
...+++....+..|.+.++. ..+++|+||||
T Consensus 7 ~~~~~l~~~aA~~l~~~i~~--~~~~~i~lsgG 37 (242)
T 2bkx_A 7 QTYEELSQIAARITADTIKE--KPDAVLGLATG 37 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--CTTCEEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHH--CCCeEEEECCC
Confidence 34577888888888888886 24689999999
No 48
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=44.55 E-value=24 Score=23.61 Aligned_cols=23 Identities=17% Similarity=-0.096 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEech
Q 027416 174 ETRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 174 ~t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
..-..|+++-+..|+++..+||+
T Consensus 15 p~C~~ak~~L~~~gi~y~~idI~ 37 (87)
T 1aba_A 15 GPCDNAKRLLTVKKQPFEFINIM 37 (87)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESC
T ss_pred ccHHHHHHHHHHcCCCEEEEEee
Confidence 35678999999999999999998
No 49
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=44.49 E-value=24 Score=30.12 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=28.1
Q ss_pred CCCHHHHHhhHHHHHHHHHHHhCC---CCeEEeccCCc
Q 027416 73 HSPEEEIAFGPGCWLWDYLRRSGA---SGFLLPLSGGA 107 (223)
Q Consensus 73 ~~~~eEi~~~~~~~L~dylr~s~~---~g~vl~LSGG~ 107 (223)
....+++....+..+.+.++.... +.++|+||||-
T Consensus 27 ~~~~~~la~~aA~~i~~~i~~a~~~~~~~~~l~LsgGs 64 (289)
T 3hn6_A 27 RPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGS 64 (289)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSS
T ss_pred ECCHHHHHHHHHHHHHHHHHHHhhccCCcEEEEECCCc
Confidence 455788999999999999987542 23899999993
No 50
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=42.78 E-value=26 Score=29.59 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=28.0
Q ss_pred CCHHHHHhhHHHHHHHHHHHhC--CCC-eEEeccCCchHHHH
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSG--ASG-FLLPLSGGADSSSV 112 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~--~~g-~vl~LSGG~DSs~~ 112 (223)
...+++....+..|.+.++... .++ ++|||||| ||..
T Consensus 7 ~~~~~la~~aA~~i~~~i~~~~~~~~~~~~lglsgG--sTp~ 46 (289)
T 1ne7_A 7 EHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTG--STPL 46 (289)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCS--HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEcCC--ccHH
Confidence 3457889999999999998743 235 89999999 4543
No 51
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=42.57 E-value=28 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=22.4
Q ss_pred HHHHHhhHHHHHHHHHHHh--CCCCeEEeccCC
Q 027416 76 EEEIAFGPGCWLWDYLRRS--GASGFLLPLSGG 106 (223)
Q Consensus 76 ~eEi~~~~~~~L~dylr~s--~~~g~vl~LSGG 106 (223)
.+|.....+..+.+.+++. ....++|+||||
T Consensus 10 ~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgG 42 (226)
T 3lwd_A 10 RQRLAERLADTVAQALEADLAKRERALLVVSGG 42 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4667777777777666553 234699999999
No 52
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=42.43 E-value=27 Score=29.27 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCCHHHHHhhHHHHHHHHHHHhCC--CCeEEeccCC
Q 027416 73 HSPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGG 106 (223)
Q Consensus 73 ~~~~eEi~~~~~~~L~dylr~s~~--~g~vl~LSGG 106 (223)
....+++....+..+.+.++..-. ..++|+||||
T Consensus 11 ~~~~~~l~~~aA~~i~~~i~~a~~~~~~~~l~LsgG 46 (267)
T 3css_A 11 CENLSQMSFAAREVILAAIDARVDKSVPVVLALSGG 46 (267)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCS
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 445678899999899888887433 3699999999
No 53
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=38.58 E-value=30 Score=29.02 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCHHHHHhhHHHHHHHHHHHhC--CCCeEEeccCCchHHHH
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSV 112 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~--~~g~vl~LSGG~DSs~~ 112 (223)
...+++....+..+.+.++..- ...++|+|||| ||-.
T Consensus 11 ~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgG--stP~ 49 (266)
T 3eb9_A 11 ATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGG--STPK 49 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCGGGCSEEEEECCS--HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCC--CCHH
Confidence 4567888888888888776643 34699999999 4443
No 54
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=38.22 E-value=23 Score=29.09 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=21.1
Q ss_pred CHHHHHhhHHHHHHHHHHHh--CCCCeEEeccCC
Q 027416 75 PEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGG 106 (223)
Q Consensus 75 ~~eEi~~~~~~~L~dylr~s--~~~g~vl~LSGG 106 (223)
..+++....+..+.+.+++. ....++|+||||
T Consensus 10 ~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsgG 43 (232)
T 3lhi_A 10 NAAEAAQSLADAVADALQGALDEKGGAVLAVSGG 43 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45677777776665555432 124699999999
No 55
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=36.62 E-value=25 Score=28.93 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=22.0
Q ss_pred CCHHHHHhhHHHHHHHHHHHhC--CCCeEEeccCC
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGG 106 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~--~~g~vl~LSGG 106 (223)
...+++....+..+.+.+++.- ...++|+||||
T Consensus 12 ~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsgG 46 (233)
T 3nwp_A 12 DTPSALEQQLASKIASQLQEAVDARGKASLVVSGG 46 (233)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4456777777666655554421 24699999999
No 56
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=36.34 E-value=72 Score=23.66 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=24.4
Q ss_pred EEEECCCCCCHH---HHHHHHHHHHHhCCcEEEEech
Q 027416 163 TVFMGSENSSQE---TRMRAKKLADEIGSWHLDVSID 196 (223)
Q Consensus 163 t~~m~~~~ss~~---t~~~A~~LA~~lG~~~~~i~I~ 196 (223)
.+|..+....-. .-.+|+.+-+..|+.|.++||+
T Consensus 3 ~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~ 39 (121)
T 1u6t_A 3 RVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIA 39 (121)
T ss_dssp EEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECT
T ss_pred EEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECC
Confidence 455544333333 3368999999999999999997
No 57
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=35.68 E-value=34 Score=27.61 Aligned_cols=30 Identities=17% Similarity=-0.062 Sum_probs=23.3
Q ss_pred CCHHHHHhhHHHHHHHHHHHhCCCCeEEeccCC
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 106 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG 106 (223)
...+++....+..|.+.++. ++.+|+||||
T Consensus 8 ~~~~~l~~~aA~~l~~~i~~---~~~~i~ls~G 37 (234)
T 2ri0_A 8 KNKTEGSKVAFRMLEEEITF---GAKTLGLATG 37 (234)
T ss_dssp SSHHHHHHHHHHHHHHHHHT---TCCEEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHh---CCCEEEEcCC
Confidence 34567888888888888876 3349999999
No 58
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=34.99 E-value=42 Score=27.80 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=24.9
Q ss_pred CCHHHHHhhHHHHHHHHHHHhC--CCCeEEeccCCchHHH
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSS 111 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~--~~g~vl~LSGG~DSs~ 111 (223)
...+++....+..+.+.+++.- ...++|+|||| ||-
T Consensus 14 ~~~~~l~~~~A~~i~~~i~~~~~~~~~~~l~LsgG--stP 51 (248)
T 3oc6_A 14 ADTAALVAAAGDRLVDAISSAIGERGQATIVLTGG--GTG 51 (248)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCS--HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC--ccH
Confidence 3456777777777777766521 24799999999 544
No 59
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=34.78 E-value=85 Score=21.74 Aligned_cols=48 Identities=23% Similarity=0.249 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEechHH---HHHHHHHhhHhhC--CCCCceeccc
Q 027416 174 ETRMRAKKLADEIGSWHLDVSIDTV---VSAFLSLFQTLTG--KRPRYKVTMV 221 (223)
Q Consensus 174 ~t~~~A~~LA~~lG~~~~~i~I~~~---v~~~~~~~~~~~g--~~p~~~~~~~ 221 (223)
..-..|+.+-+.+|+++..++|+.. -......+...+| .-|++-.+|.
T Consensus 30 p~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 82 (113)
T 3rhb_A 30 SYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGK 82 (113)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred hhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCE
Confidence 4566888999999999999999852 3444455555544 4577766663
No 60
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=33.58 E-value=30 Score=28.78 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=25.1
Q ss_pred CCHHHHHhhHHHHHHHHHHHhC--CCCeEEeccCCchHHH
Q 027416 74 SPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSS 111 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s~--~~g~vl~LSGG~DSs~ 111 (223)
...+++....+..+.+.+++.- ...++|+|||| ||-
T Consensus 14 ~~~~~l~~~~A~~i~~~i~~a~~~~~~~~l~LsgG--stP 51 (251)
T 3tx2_A 14 ADTDALVTAAGDRLASAITGALAERGKAMIVLTGG--GTG 51 (251)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCS--HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC--chH
Confidence 4467777777777777776521 24699999999 544
No 61
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=33.38 E-value=24 Score=29.00 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=21.2
Q ss_pred HHHHhhHHHHHHHHHHHh--CCCCeEEeccCCchHHHH
Q 027416 77 EEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSV 112 (223)
Q Consensus 77 eEi~~~~~~~L~dylr~s--~~~g~vl~LSGG~DSs~~ 112 (223)
+++....+..|.+.++.. ....++|+|||| ||-.
T Consensus 23 ~~l~~~aA~~i~~~i~~~~~~~~~~~l~LsgG--sTp~ 58 (232)
T 1vl1_A 23 DGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGG--RTPL 58 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCSCEEEEECCS--TTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC--ccHH
Confidence 345666666666655541 124699999999 4443
No 62
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=33.26 E-value=59 Score=26.23 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHH-hCCcEEEEechHHH
Q 027416 171 SSQETRMRAKKLADE-IGSWHLDVSIDTVV 199 (223)
Q Consensus 171 ss~~t~~~A~~LA~~-lG~~~~~i~I~~~v 199 (223)
.+....+.|.+..+. .|+....-++.+++
T Consensus 181 ~~~~~h~~aL~~m~~~~G~~i~ts~~~~~~ 210 (211)
T 3o94_A 181 IWPENHQFALGHFKNTLGAKLVDENLNELF 210 (211)
T ss_dssp SCHHHHHHHHHHHHHTSCCEEECTTSCBC-
T ss_pred CCHHHHHHHHHHHHHHCCcEEechhhHhhc
Confidence 346677778777777 89988776665543
No 63
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=32.77 E-value=2.1e+02 Score=24.41 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=29.8
Q ss_pred hhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 027416 155 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 194 (223)
Q Consensus 155 ~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~ 194 (223)
+.|...+.-+.+.+..-+++....|.++|...|+.|.--+
T Consensus 169 ~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTS 208 (288)
T 3oa3_A 169 LAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTS 208 (288)
T ss_dssp HHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECC
T ss_pred HHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcC
Confidence 3444445666666655667888899999999999997665
No 64
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=32.61 E-value=31 Score=29.04 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCCHHHHHhhHHHHHHHHHHHhC--CCCeEEeccCCchHHH
Q 027416 73 HSPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSS 111 (223)
Q Consensus 73 ~~~~eEi~~~~~~~L~dylr~s~--~~g~vl~LSGG~DSs~ 111 (223)
....+++....+..+.+.+++.- ...++|+|||| ||-
T Consensus 29 ~~~~~~l~~~~A~~i~~~i~~ai~~~~~~~l~LsgG--stP 67 (268)
T 3ico_A 29 FPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGG--GNG 67 (268)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCS--HHH
T ss_pred cCCcchhhhhhcchhhhHhHHHHHhcCceEEEEecC--Cch
Confidence 45577888888888877776621 24799999999 544
No 65
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=30.73 E-value=53 Score=28.48 Aligned_cols=37 Identities=11% Similarity=0.267 Sum_probs=27.4
Q ss_pred CCHHHHHhhHHHHHHHHHHHh---CC-CCeEEeccCCchHHHH
Q 027416 74 SPEEEIAFGPGCWLWDYLRRS---GA-SGFLLPLSGGADSSSV 112 (223)
Q Consensus 74 ~~~eEi~~~~~~~L~dylr~s---~~-~g~vl~LSGG~DSs~~ 112 (223)
...+++....+..+.+.++.. .. ..++|+|||| ||-.
T Consensus 33 ~d~~~ls~~aA~~i~~~I~~~~~~~~~~~~~l~LsgG--sTP~ 73 (312)
T 3e15_A 33 KDLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSGG--KTPI 73 (312)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEECCS--HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhCCCEEEEEeCC--CCHH
Confidence 446788888888888888752 22 4699999999 5543
No 66
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=29.68 E-value=56 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCcEEEEechH
Q 027416 176 RMRAKKLADEIGSWHLDVSIDT 197 (223)
Q Consensus 176 ~~~A~~LA~~lG~~~~~i~I~~ 197 (223)
-..|+++-+..|++|.++||+.
T Consensus 17 C~~aK~~L~~~gi~y~~idi~~ 38 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDEVDIEH 38 (92)
T ss_dssp HHHHHHHHHHTTCCCEEEETTT
T ss_pred HHHHHHHHHhcCCceEEEEcCC
Confidence 4678899999999999999984
No 67
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=28.08 E-value=1.5e+02 Score=20.54 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhC--CCCCceecc
Q 027416 175 TRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG--KRPRYKVTM 220 (223)
Q Consensus 175 t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g--~~p~~~~~~ 220 (223)
.-..|+.+-+.+|+.+..+||+.- ......+...+| .-|+.-.+|
T Consensus 32 ~C~~ak~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~ifi~g 78 (109)
T 1wik_A 32 FSKQILEILNSTGVEYETFDILED-EEVRQGLKTFSNWPTYPQLYVRG 78 (109)
T ss_dssp THHHHHHHHHHTCSCEEEEESSSC-HHHHHHHHHHHSCCSSCEEECSS
T ss_pred hHHHHHHHHHHcCCCeEEEECCCC-HHHHHHHHHHhCCCCCCEEEECC
Confidence 456788888999999999999842 223333333344 235554444
No 68
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=27.84 E-value=41 Score=28.82 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=22.6
Q ss_pred ceecCCCCCCCceEEEEEEehhhHHHHHhhcCc
Q 027416 2 IAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISS 34 (223)
Q Consensus 2 la~~~rFs~~d~~v~~a~vDl~~~r~~R~~~~s 34 (223)
+++.+.| +.++++++||++.++..|.+...
T Consensus 243 la~~~~~---~e~il~a~idl~~~~~~R~~~~~ 272 (334)
T 2dyu_A 243 LVQGHRN---PWEIVTGEIYPKMADNARLSWGL 272 (334)
T ss_dssp EEECCCC---TTCEEEEEECHHHHHHHHHHCST
T ss_pred eeecCCC---CCeEEEEEEcHHHHHHHHhhCch
Confidence 4555544 34799999999999999976533
No 69
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=25.20 E-value=52 Score=29.21 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=19.0
Q ss_pred CceEEEEEEehhhHHHHHhhcCc
Q 027416 12 DVEVVVAQVDLDAVAGFRGSISS 34 (223)
Q Consensus 12 d~~v~~a~vDl~~~r~~R~~~~s 34 (223)
+.++++++||++.++..|.+...
T Consensus 335 ~e~il~aeiDl~~~~~~R~~~p~ 357 (405)
T 2vhh_A 335 KDGLLVVELDLNLCRQVKDFWGF 357 (405)
T ss_dssp SCEEEEEEEETTHHHHHHHHHCT
T ss_pred CCeEEEEEECHHHHHHHHHhCCc
Confidence 34899999999999999976533
No 70
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=22.49 E-value=98 Score=25.70 Aligned_cols=32 Identities=16% Similarity=-0.045 Sum_probs=25.1
Q ss_pred HHHHHhhHHHHHHHHHHHhCCCCeEEeccCCc
Q 027416 76 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGA 107 (223)
Q Consensus 76 ~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~ 107 (223)
.++....++..-.+||.+.-..+-+||+++|-
T Consensus 35 ~~~~~~~lg~~aA~~L~~~l~~~~viGv~wG~ 66 (267)
T 3nze_A 35 EAETLDRVAMQAARTIGPLVDSNAIIGVAWGA 66 (267)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSSCEEEECCSH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCEEEECCCH
Confidence 44566777777788888777788999999994
No 71
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=21.93 E-value=1.7e+02 Score=19.00 Aligned_cols=46 Identities=11% Similarity=-0.014 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCCcEEEEechH----HHHHHHHHhhHh--hCCCCCceecc
Q 027416 175 TRMRAKKLADEIGSWHLDVSIDT----VVSAFLSLFQTL--TGKRPRYKVTM 220 (223)
Q Consensus 175 t~~~A~~LA~~lG~~~~~i~I~~----~v~~~~~~~~~~--~g~~p~~~~~~ 220 (223)
.-..|+.+.+.+|+++..++|+. .-......+... ....|....+|
T Consensus 24 ~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g 75 (92)
T 3ic4_A 24 HCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGD 75 (92)
T ss_dssp HHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETT
T ss_pred HHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECC
Confidence 44567888889999999999983 122222333333 34677776665
No 72
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=21.81 E-value=1.7e+02 Score=18.96 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCcEEEEechHHHHHHHHHhhHh---hCCCCCceecc
Q 027416 177 MRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL---TGKRPRYKVTM 220 (223)
Q Consensus 177 ~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~---~g~~p~~~~~~ 220 (223)
..++.+.+..|+.+..+||+ ......+... ...-|.+-.+|
T Consensus 20 ~~~~~~L~~~~i~~~~vdv~---~~~~~~l~~~~~~~~~vP~l~~~g 63 (89)
T 2klx_A 20 KRARDLLDKKGVKYTDIDAS---TSLRQEMVQRANGRNTFPQIFIGD 63 (89)
T ss_dssp HHHHHHHHHHTCCEEEECSC---HHHHHHHHHHHHSSCCSCEEEETT
T ss_pred HHHHHHHHHcCCCcEEEECC---HHHHHHHHHHhCCCCCcCEEEECC
Confidence 45677778889999999998 2222223222 34567765555
No 73
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=20.55 E-value=1.5e+02 Score=20.15 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhC--CCCCceecc
Q 027416 175 TRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG--KRPRYKVTM 220 (223)
Q Consensus 175 t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g--~~p~~~~~~ 220 (223)
.-..|+.+-+.+|+.+..+||+.- ......+...+| .-|+.-.+|
T Consensus 34 ~C~~~~~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~v~i~g 80 (105)
T 2yan_A 34 FSKQILEILNSTGVEYETFDILED-EEVRQGLKAYSNWPTYPQLYVKG 80 (105)
T ss_dssp HHHHHHHHHHHHTCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETT
T ss_pred cHHHHHHHHHHCCCCeEEEECCCC-HHHHHHHHHHHCCCCCCeEEECC
Confidence 456788888999999999999852 223333333344 346655555
Done!