RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027416
(223 letters)
>gnl|CDD|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing).
Length = 700
Score = 434 bits (1118), Expect = e-150
Identities = 174/225 (77%), Positives = 191/225 (84%), Gaps = 3/225 (1%)
Query: 1 MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNL 60
++AQGSQFSL+DVEVV A VDLDAV FRGSISSF+EQAS K ++ SVAV + LC PF+L
Sbjct: 253 VVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSL 312
Query: 61 KMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC 120
+ S PLKI YHSPEEEIA GP CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVG MC
Sbjct: 313 SLVPSSPLKIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMC 372
Query: 121 QLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAK 180
QLVVK I G+EQVKADA RIG YA+GE PT+S+EFAKRIFYTV+MGSENSS+ETR RAK
Sbjct: 373 QLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSENSSEETRSRAK 432
Query: 181 KLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKV---TMVE 222
+LADEIGS HLDV ID VVSA LSLFQTLTGKRPRYKV + E
Sbjct: 433 QLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAE 477
>gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which
catalyzes the final step in de novo nicotinamide adenine
dinucleotide (NAD+) biosynthesis, an amide transfer from
either ammonia or glutamine to nicotinic acid adenine
dinucleotide (NaAD). The conversion of NaAD to NAD+
occurs via an NAD-adenylate intermediate and requires
ATP and Mg2+. The intemediate is subsequently cleaved
into NAD+ and AMP. In many prokaryotes, such as E. coli
, NAD synthetase consists of a single domain and is
strictly ammonia dependent. In contrast, eukaryotes and
other prokaryotes have an additional N-terminal
amidohydrolase domain that prefer glutamine,
Interestingly, NAD+ synthases in these prokaryotes, can
also utilize ammonia as an amide source .
Length = 248
Score = 108 bits (272), Expect = 5e-29
Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 37/146 (25%)
Query: 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQ 133
EEI +L DYLR+SG G +L LSGG DS+ VAA+ G E
Sbjct: 1 EDLEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRAL---------GREN 51
Query: 134 VKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDV 193
V +FM S SS+ETR AK+LA+ +G H+++
Sbjct: 52 V---------------------------LALFMPSRYSSEETREDAKELAEALGIEHVNI 84
Query: 194 SIDTVVSAFLSLFQTLTGKRPRYKVT 219
ID V AFL+L G +
Sbjct: 85 DIDPAVEAFLALLGESGGS-ELEDLA 109
>gnl|CDD|217093 pfam02540, NAD_synthase, NAD synthase. NAD synthase (EC:6.3.5.1)
is involved in the de novo synthesis of NAD and is
induced by stress factors such as heat shock and glucose
limitation.
Length = 242
Score = 55.8 bits (135), Expect = 2e-09
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 36/122 (29%)
Query: 86 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYA 145
+L DY+++SGA G +L LSGG DS A+V + + G E V A
Sbjct: 8 FLRDYVQKSGAKGVVLGLSGGIDS----AVVAYLAVKAL-----GKENVLA--------- 49
Query: 146 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 205
+ M S NSS+E A LA+ +G + + I +V AF L
Sbjct: 50 ------------------LIMPSINSSEEDVQDALALAENLGINYKTIDIKPIVRAFSQL 91
Query: 206 FQ 207
FQ
Sbjct: 92 FQ 93
>gnl|CDD|223249 COG0171, NadE, NAD synthase [Coenzyme metabolism].
Length = 268
Score = 48.4 bits (116), Expect = 6e-07
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 32/134 (23%)
Query: 86 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYA 145
+L DYL+++G G +L LSGG DS A+V + A+
Sbjct: 15 FLRDYLKKAGFKGVVLGLSGGIDS----ALVLALAV---------------RAL------ 49
Query: 146 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 205
+ +K V + + Q A+ LA+ +G + +++I V AFL
Sbjct: 50 -------GKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKK 102
Query: 206 FQTLTGKRPRYKVT 219
L +
Sbjct: 103 LLKLFLGIYLEDLA 116
>gnl|CDD|233019 TIGR00552, nadE, NAD+ synthetase. NAD+ synthetase is a nearly
ubiquitous enzyme for the final step in the biosynthesis
of the essensial cofactor NAD. The member of this family
from Bacillus subtilis is a strictly NH(3)-dependent
NAD(+) synthetase of 272 amino acids. Proteins
consisting only of the domain modeled here may be named
as NH3-dependent NAD+ synthetase. Amidotransferase
activity may reside in a separate protein, or not be
present. Some other members of the family, such as from
Mycobacterium tuberculosis, are considerably longer,
contain an apparent amidotransferase domain, and show
glutamine-dependent as well as NH(3)-dependent activity
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 250
Score = 47.4 bits (113), Expect = 1e-06
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 36/129 (27%)
Query: 86 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYA 145
+L Y+++SGA G +L LSGG DS+ VAA+ V+A
Sbjct: 12 FLRGYVQKSGAKGVVLGLSGGIDSAVVAAL-----------------CVEA--------- 45
Query: 146 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 205
++ + S + ++ A LA+ +G + ++ I + ++F +
Sbjct: 46 ----------LGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASFQAQ 95
Query: 206 FQTLTGKRP 214
+T
Sbjct: 96 TETGDELSD 104
>gnl|CDD|234831 PRK00768, nadE, NAD synthetase; Reviewed.
Length = 268
Score = 44.0 bits (105), Expect = 2e-05
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 75 PEEEI----AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--A 128
PEEEI F L DYL++SG +L +SGG DS+ + G + QL V+E+
Sbjct: 18 PEEEIRRRVDF-----LKDYLKKSGLKSLVLGISGGQDST----LAGRLAQLAVEELRAE 68
Query: 129 NGNEQVKADAIR 140
G++ + A+R
Sbjct: 69 TGDDDYQFIAVR 80
>gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional.
Length = 265
Score = 42.5 bits (101), Expect = 6e-05
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 36/125 (28%)
Query: 89 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGE 148
+ + ++GA G +L LSGG DS+ VA L VK A G E V A
Sbjct: 23 EEVEKAGAKGVVLGLSGGIDSAVVAY-------LAVK--ALGKENVLA------------ 61
Query: 149 FPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 208
+ M S S E A+ +A+++G + + I +V AF S
Sbjct: 62 ---------------LLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPD 106
Query: 209 LTGKR 213
R
Sbjct: 107 ADRLR 111
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional.
Length = 540
Score = 43.2 bits (103), Expect = 6e-05
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 36/116 (31%)
Query: 89 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGE 148
DY+R++G G +L LSGG DS+ VAAI V A G E+V+A
Sbjct: 273 DYVRKNGFPGVVLGLSGGIDSALVAAI-------AVD--ALGAERVRA------------ 311
Query: 149 FPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLS 204
V M S +S+E+ A LA +G + + I+ AF +
Sbjct: 312 ---------------VMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEA 352
>gnl|CDD|185554 PTZ00323, PTZ00323, NAD+ synthase; Provisional.
Length = 294
Score = 35.5 bits (82), Expect = 0.016
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 80 AFGPGCW-------LWDYLRRSGASGFLLPLSGGADSSSVAAI 115
AF P W L +Y+RR G G + +SGG DS+ V A+
Sbjct: 23 AFNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLAL 65
>gnl|CDD|236038 PRK07521, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 483
Score = 34.5 bits (80), Expect = 0.031
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 1 MIAQGS---QFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQ 38
+A GS LRD Q LD +A RG I+ F E
Sbjct: 267 PLAGGSLAALLQLRDEIAPTYQAQLDEIA--RGLITRFAES 305
>gnl|CDD|107331 cd06336, PBP1_ABC_ligand_binding_like_3, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in transport of amino acids,
peptides, or inorganic ions. This group includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. Members of this group are
sequence-similar to members of the family of ABC-type
hydrophobic amino acid transporters (HAAT), such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been determined
experimentally.
Length = 347
Score = 34.6 bits (80), Expect = 0.034
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEI-ANGNEQVKADA--IRIGRYANGEFPTESR 154
GF PLSG A + + + G QL +EI A G +V + I Y + P E+
Sbjct: 3 GFSGPLSGPAAAWGLPGLRG--VQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAA 60
Query: 155 EFAKRI 160
A+R+
Sbjct: 61 ANARRL 66
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis, Aspartate
family].
Length = 466
Score = 33.1 bits (76), Expect = 0.10
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 37/102 (36%)
Query: 103 LSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFY 162
LSGG DSS VAAI + + +
Sbjct: 259 LSGGLDSSLVAAIAR--------------REAPRGPVHT--------------------F 284
Query: 163 TVFMGSENSSQETRMRAKKLADEIGSWH--LDVSIDTVVSAF 202
++ E+ A+K+AD +G+ H + S++ + A
Sbjct: 285 SIGFEGSPDFDESPY-ARKVADHLGTEHHEVLFSVEEGLDAL 325
>gnl|CDD|217642 pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of
regulatory proteins has ADP-dependent kinase and
inorganic phosphate-dependent pyrophosphorylase
activity.
Length = 255
Score = 31.6 bits (73), Expect = 0.25
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 160 IFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKV 218
+FYT+ E R ++ A+ +G +D+ + L ++ G +P +
Sbjct: 56 VFYTLV------DPELREILEEFAEALGIPCVDL-----LGPLLEPLESELGIKPSPEP 103
>gnl|CDD|235419 PRK05339, PRK05339, PEP synthetase regulatory protein; Provisional.
Length = 269
Score = 31.2 bits (72), Expect = 0.30
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 11/59 (18%)
Query: 160 IFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKV 218
+FYT+ E R ++ E G +D+ + ++ + G +P +
Sbjct: 62 VFYTLV------DPELREILEERCAEFGIPCIDI-----LGPLIAPLEQELGLKPTPEP 109
>gnl|CDD|238949 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine
Synthase B. This domain is always found associated
n-terminal amidotransferase domain. Family members that
contain this domain catalyse the conversion of aspartate
to asparagine. Asparagine synthetase B catalyzes the
assembly of asparagine from aspartate, Mg(2+)ATP, and
glutamine. The three-dimensional architecture of the
N-terminal domain of asparagine synthetase B is similar
to that observed for glutamine
phosphoribosylpyrophosphate amidotransferase while the
molecular motif of the C-domain is reminiscent to that
observed for GMP synthetase .
Length = 269
Score = 30.5 bits (69), Expect = 0.59
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 101 LPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRI 160
+ LSGG DSS VAA+ E VK +I G + E +R A+ +
Sbjct: 20 VLLSGGLDSSLVAALAA----------RLLPEPVKTFSIGFGFEGSDEREY-ARRVAEHL 68
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 30.1 bits (68), Expect = 0.89
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 99 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVK 135
F L LSGG DSS VAAI V K I NG +
Sbjct: 240 FGLFLSGGLDSSIVAAI-------VAKLIKNGEIDLS 269
>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Sorbitol dehydrogenase is tetrameric and has a single
catalytic zinc per subunit. Aldose reductase catalyzes
the NADP(H)-dependent conversion of glucose to sorbital,
and SDH uses NAD(H) in the conversion of sorbitol to
fructose. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 343
Score = 30.2 bits (69), Expect = 0.93
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 116 VGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 175
+G + V K A G +V I R EFAK + T + +++T
Sbjct: 174 IGLLTAAVAK--AFGATKVVVTDIDPSR----------LEFAKELGATHTVNV--RTEDT 219
Query: 176 RMRAKKLADEIGSWHLDVSIDT 197
A+K+A+ +G DV I+
Sbjct: 220 PESAEKIAELLGGKGPDVVIEC 241
>gnl|CDD|224315 COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 314
Score = 30.0 bits (68), Expect = 0.95
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 106 GADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIF 161
G D+ ++AAI G + G E + + + + + E A +
Sbjct: 266 GGDTDTIAAITGAIAG-----AYYGEEAIPQQLL---AELDEDLIGDLAELAYALA 313
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 29.3 bits (66), Expect = 1.6
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 38/89 (42%)
Query: 103 LSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFY 162
LSGG DSS +AAI E +
Sbjct: 237 LSGGLDSSLIAAIA-------------------------------------AEELGKEGK 259
Query: 163 TVF-MGSENSSQETRMRAKKLADEIGSWH 190
T F +G E+S A+ +A +G+ H
Sbjct: 260 TTFTVGFEDSDSPDAKYARAVAKFLGTPH 288
>gnl|CDD|216090 pfam00733, Asn_synthase, Asparagine synthase. This family is
always found associated with pfam00310. Members of this
family catalyze the conversion of aspartate to
asparagine.
Length = 195
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 103 LSGGADSSSVAAI 115
LSGG DSS +AA+
Sbjct: 24 LSGGLDSSLIAAL 36
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 28.7 bits (65), Expect = 3.0
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 98 GFLLPLSGGADSSSVAAI 115
G LL SGG DSS ++AI
Sbjct: 231 GVLL--SGGLDSSLISAI 246
>gnl|CDD|179150 PRK00876, nadE, NAD synthetase; Reviewed.
Length = 326
Score = 28.0 bits (63), Expect = 3.7
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 39/112 (34%)
Query: 91 LRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFP 150
LRR G +L LSGG DSS AA L V+ + G E+V
Sbjct: 31 LRRRGV---VLGLSGGIDSSVTAA-------LCVRAL--GKERV---------------- 62
Query: 151 TESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAF 202
Y + M +SS E+ +++A+ +G ++ I + A
Sbjct: 63 -----------YGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEAL 103
>gnl|CDD|183745 PRK12787, fliX, flagellar assembly regulator FliX; Reviewed.
Length = 138
Score = 27.3 bits (61), Expect = 3.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 92 RRSGASGFLLPLSGGADSSSVAAIVG 117
RR+G+SGF LP + + A+
Sbjct: 19 RRTGSSGFSLPDESASGAGEARAVSA 44
>gnl|CDD|184975 PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.
Length = 477
Score = 28.1 bits (62), Expect = 3.9
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 23 DAVAGFRGSISSFQEQAS-CKTKISSVAVQYSLCQ 56
DA++GF GS+ + +AS +I V ++Y+LC+
Sbjct: 328 DAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCE 362
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 27.9 bits (62), Expect = 4.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 136 ADAIRIGRYANGEFPTESREFAKRIFYTVFMG 167
A A IG Y FP A +FY VF+G
Sbjct: 103 AIACFIGAYCESLFPVGPGWLAALVFYIVFIG 134
>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed.
Length = 511
Score = 27.3 bits (62), Expect = 7.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 100 LLPLSGGADSSSVAAIV 116
+L LSGG DSS A ++
Sbjct: 219 ILGLSGGVDSSVAAVLL 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.387
Gapped
Lambda K H
0.267 0.0872 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,052,804
Number of extensions: 1003164
Number of successful extensions: 901
Number of sequences better than 10.0: 1
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 37
Length of query: 223
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 130
Effective length of database: 6,812,680
Effective search space: 885648400
Effective search space used: 885648400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)