RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027416
(223 letters)
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 66.5 bits (161), Expect = 9e-14
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 74 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQ 133
P++EI +L Y++++GA GF+L +SGG DS + G + QL V+ I
Sbjct: 17 DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIREEGGD 71
Query: 134 VKADAIRI 141
+ A+R+
Sbjct: 72 AQFIAVRL 79
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 54.5 bits (130), Expect = 1e-09
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 75 PEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKE--IANGN 131
EEEI +L YL+ +L +SGG DS + G +CQ+ + E + GN
Sbjct: 18 AEEEIRRSVD-FLKSYLQTYPFIKSLVLGISGGQDS----TLAGKLCQMAINELRLETGN 72
Query: 132 EQVKADAIR 140
E ++ A+R
Sbjct: 73 ESLQFIAVR 81
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
{Helicobacter pylori [TaxId: 210]}
Length = 255
Score = 47.6 bits (112), Expect = 2e-07
Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 15/139 (10%)
Query: 86 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGN-----------EQV 134
+L +++ G + LSGG DS+ V + CQ V KE A+ +
Sbjct: 13 FLEKEVQKRGFKKVVYGLSGGLDSAVVGVL----CQKVFKENAHALLMPSSVSMPENKTD 68
Query: 135 KADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 194
+ E+ + + + + R+R L D V
Sbjct: 69 ALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVI 128
Query: 195 IDTVVSAFLSLFQTLTGKR 213
+ S + + TL G
Sbjct: 129 GTSNKSERMLGYGTLFGDL 147
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 324
Score = 31.1 bits (69), Expect = 0.086
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 103 LSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFY 162
LSGG DSS ++AI + + + + E+ +A ++ +A G + + A+ +
Sbjct: 41 LSGGLDSSIISAI---TKKYAARRVED-QERSEAWWPQLHSFAVGLPGSPDLKAAQEVAN 96
Query: 163 TVFM 166
+
Sbjct: 97 HLGT 100
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 28.1 bits (61), Expect = 0.63
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 93 RSGASGFLLPLSGGADSSSVAAIVGCMC 120
+ G +L LSGG DSS A ++
Sbjct: 17 QVGDDKVILGLSGGVDSSVTAMLLHRAI 44
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 296
Score = 28.0 bits (61), Expect = 0.79
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 103 LSGGADSSSVAAI 115
LSGG DSS V A+
Sbjct: 40 LSGGLDSSLVTAL 52
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 299
Score = 28.1 bits (61), Expect = 0.95
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 103 LSGGADSSSVAAIV 116
LSGG DSS VAA
Sbjct: 39 LSGGIDSSGVAACA 52
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 271
Score = 26.6 bits (57), Expect = 2.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 11 RDVEVVVAQVDLDAVAGFRGSISSFQ 36
V++ A++DL V R F
Sbjct: 244 ERVDMCFAEIDLSYVDTLREMQPVFS 269
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 346
Score = 26.3 bits (56), Expect = 3.8
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 98 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFA 157
+ +SG G + +K+I N +K D + Y + P ++ A
Sbjct: 6 AVVGAMSGPIAQWGDMEFNG--ARQAIKDI-NAKGGIKGDKLVGVEYDDACDPKQAVAVA 62
Query: 158 KRI 160
+I
Sbjct: 63 NKI 65
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 139
Score = 25.1 bits (54), Expect = 4.7
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 20/56 (35%)
Query: 152 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 207
+ REF + + VF DE SW+ D S +
Sbjct: 1 DMREFV--LLFMVF------------------DEKKSWYYDKKPTRSWRRASSEVK 36
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 24.5 bits (53), Expect = 6.2
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 91 LRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIG 142
L R + + + GG S + M + +K + + K ++ G
Sbjct: 7 LWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 58
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 25.3 bits (54), Expect = 6.6
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 100 LLPLSGGADSSSVAAI 115
++ SGG DS++
Sbjct: 5 VVVFSGGQDSTTCLIQ 20
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 301
Score = 25.2 bits (54), Expect = 7.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 83 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC 120
P L + G L ++ G D+ S+A++ G M
Sbjct: 228 PSAIATYLLTDNFKEGMLKCINAGGDTDSLASMYGAMA 265
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.387
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 797,128
Number of extensions: 34163
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 14
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)