Query 027417
Match_columns 223
No_of_seqs 146 out of 1868
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 09:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2E-43 4.2E-48 255.5 20.7 175 8-182 3-178 (205)
2 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.3E-40 5E-45 241.9 21.8 222 1-222 1-222 (222)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 2.9E-40 6.4E-45 238.1 18.7 168 12-179 3-170 (200)
4 KOG0078 GTP-binding protein SE 100.0 6.8E-39 1.5E-43 235.2 22.8 173 10-182 8-180 (207)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.5E-39 1.2E-43 231.7 19.2 167 12-178 20-187 (221)
6 KOG0080 GTPase Rab18, small G 100.0 8.8E-39 1.9E-43 223.4 19.4 169 9-177 6-175 (209)
7 KOG0098 GTPase Rab2, small G p 100.0 1.6E-38 3.5E-43 227.5 20.1 174 11-184 3-176 (216)
8 PLN03110 Rab GTPase; Provision 100.0 1.8E-37 3.9E-42 238.6 25.8 207 11-222 9-215 (216)
9 KOG0394 Ras-related GTPase [Ge 100.0 7.8E-38 1.7E-42 223.6 18.1 172 10-181 5-183 (210)
10 cd04120 Rab12 Rab12 subfamily. 100.0 8.1E-37 1.8E-41 231.8 24.7 167 15-181 1-168 (202)
11 KOG0079 GTP-binding protein H- 100.0 1E-37 2.2E-42 215.2 15.9 170 9-179 3-172 (198)
12 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.1E-36 4.5E-41 230.5 24.1 164 15-178 1-170 (201)
13 cd04121 Rab40 Rab40 subfamily. 100.0 1.8E-36 3.9E-41 227.9 22.7 169 11-180 3-171 (189)
14 KOG0093 GTPase Rab3, small G p 100.0 1E-36 2.2E-41 210.1 17.4 173 10-182 17-189 (193)
15 KOG0095 GTPase Rab30, small G 100.0 3.4E-37 7.3E-42 213.1 15.2 182 9-190 2-183 (213)
16 cd04125 RabA_like RabA-like su 100.0 4.9E-35 1.1E-39 220.7 24.5 164 15-178 1-164 (188)
17 cd04110 Rab35 Rab35 subfamily. 100.0 6.7E-35 1.5E-39 221.8 24.9 196 12-221 4-199 (199)
18 cd04122 Rab14 Rab14 subfamily. 100.0 5.8E-35 1.3E-39 216.0 23.1 164 14-177 2-165 (166)
19 cd04126 Rab20 Rab20 subfamily. 100.0 8.2E-35 1.8E-39 223.2 23.6 187 15-221 1-220 (220)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.4E-35 1.4E-39 218.4 21.7 164 11-176 2-180 (182)
21 cd01867 Rab8_Rab10_Rab13_like 100.0 1.4E-34 3E-39 214.3 22.6 166 12-177 1-166 (167)
22 cd04109 Rab28 Rab28 subfamily. 100.0 1E-34 2.2E-39 223.3 22.2 164 15-178 1-168 (215)
23 PLN03108 Rab family protein; P 100.0 4.1E-34 8.9E-39 219.1 25.1 171 12-182 4-174 (210)
24 cd04111 Rab39 Rab39 subfamily. 100.0 3.2E-34 6.9E-39 219.7 24.4 170 14-183 2-173 (211)
25 PTZ00369 Ras-like protein; Pro 100.0 1.4E-34 3.1E-39 218.3 22.2 164 13-177 4-168 (189)
26 cd04133 Rop_like Rop subfamily 100.0 1.1E-34 2.3E-39 216.0 21.0 159 15-175 2-172 (176)
27 cd04112 Rab26 Rab26 subfamily. 100.0 3.1E-34 6.7E-39 216.8 23.6 162 15-176 1-163 (191)
28 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.8E-34 1E-38 220.2 24.5 171 10-182 9-194 (232)
29 cd04117 Rab15 Rab15 subfamily. 100.0 2.6E-34 5.6E-39 211.6 22.0 160 15-174 1-160 (161)
30 KOG0091 GTPase Rab39, small G 100.0 3E-35 6.5E-40 206.3 15.5 172 10-181 4-178 (213)
31 KOG0088 GTPase Rab21, small G 100.0 1.2E-35 2.5E-40 207.4 13.0 210 10-223 9-218 (218)
32 cd04144 Ras2 Ras2 subfamily. 100.0 3.2E-34 6.9E-39 216.6 21.8 162 16-178 1-165 (190)
33 PF00071 Ras: Ras family; Int 100.0 3.8E-34 8.2E-39 210.7 21.5 161 16-176 1-161 (162)
34 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.1E-34 9E-39 212.6 21.7 165 14-179 2-167 (172)
35 KOG0086 GTPase Rab4, small G p 100.0 1.4E-34 3E-39 200.9 17.6 177 7-183 2-178 (214)
36 cd01865 Rab3 Rab3 subfamily. 100.0 9.7E-34 2.1E-38 209.3 23.2 162 15-176 2-163 (165)
37 cd04127 Rab27A Rab27a subfamil 100.0 6.7E-34 1.5E-38 212.9 22.6 167 12-178 2-179 (180)
38 cd04131 Rnd Rnd subfamily. Th 100.0 4.3E-34 9.3E-39 213.4 21.3 160 15-176 2-176 (178)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.2E-33 2.7E-38 208.9 23.0 163 14-176 2-164 (166)
40 cd04119 RJL RJL (RabJ-Like) su 100.0 1.2E-33 2.6E-38 208.8 22.1 162 15-176 1-167 (168)
41 cd01875 RhoG RhoG subfamily. 100.0 1.4E-33 3.1E-38 213.1 22.3 160 14-175 3-176 (191)
42 cd01866 Rab2 Rab2 subfamily. 100.0 3.9E-33 8.4E-38 206.7 23.6 166 12-177 2-167 (168)
43 cd01868 Rab11_like Rab11-like. 100.0 2.8E-33 6E-38 206.7 22.4 163 13-175 2-164 (165)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.1E-33 4.6E-38 210.5 21.7 162 15-177 1-167 (182)
45 cd01864 Rab19 Rab19 subfamily. 100.0 5.2E-33 1.1E-37 205.4 22.3 162 13-174 2-164 (165)
46 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.2E-33 1.1E-37 213.4 22.8 163 15-179 2-179 (222)
47 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.2E-33 6.9E-38 208.4 20.9 160 14-175 1-174 (175)
48 cd04113 Rab4 Rab4 subfamily. 100.0 1E-32 2.2E-37 202.9 21.7 160 15-174 1-160 (161)
49 cd04136 Rap_like Rap-like subf 100.0 7.9E-33 1.7E-37 203.7 20.9 160 15-175 2-162 (163)
50 cd04118 Rab24 Rab24 subfamily. 100.0 2.9E-32 6.3E-37 206.4 24.5 164 15-179 1-169 (193)
51 cd04132 Rho4_like Rho4-like su 100.0 1.6E-32 3.4E-37 206.8 22.8 163 15-179 1-170 (187)
52 PLN03071 GTP-binding nuclear p 100.0 9.3E-33 2E-37 212.7 21.9 164 12-178 11-174 (219)
53 KOG0097 GTPase Rab14, small G 100.0 5.2E-33 1.1E-37 190.9 18.0 174 11-184 8-181 (215)
54 cd04106 Rab23_lke Rab23-like s 100.0 1.9E-32 4.2E-37 201.5 21.7 158 15-173 1-160 (162)
55 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.1E-32 6.7E-37 202.2 22.9 162 16-177 2-166 (170)
56 smart00175 RAB Rab subfamily o 100.0 2.7E-32 5.9E-37 201.0 22.4 163 15-177 1-163 (164)
57 cd00877 Ran Ran (Ras-related n 100.0 2.1E-32 4.5E-37 202.4 21.8 160 15-177 1-160 (166)
58 cd04175 Rap1 Rap1 subgroup. T 100.0 1.8E-32 3.9E-37 202.2 21.2 161 14-175 1-162 (164)
59 PLN03118 Rab family protein; P 100.0 1E-31 2.2E-36 206.1 26.2 170 8-178 8-179 (211)
60 cd04116 Rab9 Rab9 subfamily. 100.0 5.3E-32 1.2E-36 200.8 22.3 163 11-174 2-169 (170)
61 cd04176 Rap2 Rap2 subgroup. T 100.0 3.5E-32 7.5E-37 200.5 20.9 161 14-175 1-162 (163)
62 cd04124 RabL2 RabL2 subfamily. 100.0 5.6E-32 1.2E-36 199.1 21.8 160 15-178 1-160 (161)
63 cd01871 Rac1_like Rac1-like su 100.0 4.2E-32 9.2E-37 202.2 20.9 158 15-174 2-173 (174)
64 cd04134 Rho3 Rho3 subfamily. 100.0 6.8E-32 1.5E-36 203.7 21.8 160 15-176 1-174 (189)
65 KOG0081 GTPase Rab27, small G 100.0 3.8E-34 8.3E-39 199.9 8.6 175 9-183 4-188 (219)
66 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.1E-31 2.3E-36 199.3 21.9 162 14-175 2-168 (170)
67 smart00173 RAS Ras subfamily o 100.0 8E-32 1.7E-36 198.7 20.9 161 15-176 1-162 (164)
68 cd01861 Rab6 Rab6 subfamily. 100.0 1.3E-31 2.9E-36 196.8 21.9 160 15-174 1-160 (161)
69 cd04140 ARHI_like ARHI subfami 100.0 9.3E-32 2E-36 198.7 21.0 158 15-173 2-162 (165)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.5E-31 3.2E-36 196.5 21.6 160 14-175 1-161 (162)
71 cd01860 Rab5_related Rab5-rela 100.0 2.4E-31 5.3E-36 195.8 22.7 162 14-175 1-162 (163)
72 cd04142 RRP22 RRP22 subfamily. 100.0 1E-31 2.2E-36 203.8 20.5 166 15-180 1-178 (198)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.1E-31 4.6E-36 196.3 21.7 161 14-175 2-163 (164)
74 smart00176 RAN Ran (Ras-relate 100.0 2E-31 4.3E-36 202.0 21.2 156 20-178 1-156 (200)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 4.7E-31 1E-35 194.5 22.1 160 15-175 1-163 (164)
76 cd01873 RhoBTB RhoBTB subfamil 100.0 2E-31 4.4E-36 201.5 19.9 158 14-174 2-194 (195)
77 cd04123 Rab21 Rab21 subfamily. 100.0 1.2E-30 2.5E-35 191.7 22.5 161 15-175 1-161 (162)
78 smart00174 RHO Rho (Ras homolo 100.0 4.3E-31 9.2E-36 196.7 20.0 158 17-176 1-172 (174)
79 cd01862 Rab7 Rab7 subfamily. 100.0 1.4E-30 3E-35 193.4 22.4 164 15-178 1-169 (172)
80 cd04114 Rab30 Rab30 subfamily. 100.0 2.6E-30 5.6E-35 191.5 23.5 165 11-175 4-168 (169)
81 cd04143 Rhes_like Rhes_like su 100.0 8.7E-31 1.9E-35 204.6 21.5 160 15-175 1-170 (247)
82 cd04103 Centaurin_gamma Centau 100.0 8.2E-31 1.8E-35 192.2 19.7 153 15-174 1-157 (158)
83 cd01863 Rab18 Rab18 subfamily. 100.0 2.6E-30 5.7E-35 190.0 21.8 159 15-174 1-160 (161)
84 cd04177 RSR1 RSR1 subgroup. R 100.0 2.5E-30 5.3E-35 191.6 21.6 161 15-176 2-164 (168)
85 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.7E-30 3.6E-35 193.4 20.8 157 15-173 1-171 (173)
86 cd01892 Miro2 Miro2 subfamily. 100.0 1E-30 2.2E-35 193.8 19.5 163 12-176 2-166 (169)
87 cd04146 RERG_RasL11_like RERG/ 100.0 9.3E-31 2E-35 193.3 19.1 159 16-175 1-163 (165)
88 cd04135 Tc10 TC10 subfamily. 100.0 2.1E-30 4.6E-35 192.9 20.5 159 15-175 1-173 (174)
89 cd04148 RGK RGK subfamily. Th 100.0 2.7E-30 5.9E-35 199.3 21.5 165 15-181 1-168 (221)
90 cd00154 Rab Rab family. Rab G 100.0 5.5E-30 1.2E-34 187.0 21.3 158 15-172 1-158 (159)
91 KOG0083 GTPase Rab26/Rab37, sm 100.0 3.4E-32 7.3E-37 185.0 6.0 160 18-177 1-161 (192)
92 cd04139 RalA_RalB RalA/RalB su 100.0 3.4E-29 7.4E-34 184.3 21.7 161 15-176 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 3.4E-29 7.3E-34 183.5 20.1 158 16-174 1-159 (160)
94 cd01870 RhoA_like RhoA-like su 100.0 7.8E-29 1.7E-33 184.6 20.9 159 15-175 2-174 (175)
95 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.1E-28 2.5E-33 185.2 20.7 167 14-183 3-177 (183)
96 cd04129 Rho2 Rho2 subfamily. 100.0 1E-28 2.2E-33 186.1 20.3 161 15-177 2-174 (187)
97 cd04137 RheB Rheb (Ras Homolog 100.0 2.5E-28 5.4E-33 182.8 21.5 162 15-177 2-164 (180)
98 KOG4252 GTP-binding protein [S 100.0 4.5E-31 9.7E-36 188.1 6.1 192 5-197 11-202 (246)
99 KOG0395 Ras-related GTPase [Ge 100.0 6.6E-29 1.4E-33 186.9 18.1 163 13-176 2-165 (196)
100 cd04149 Arf6 Arf6 subfamily. 100.0 6.4E-29 1.4E-33 184.0 17.5 154 13-173 8-167 (168)
101 cd04147 Ras_dva Ras-dva subfam 100.0 2.3E-28 5.1E-33 185.7 20.8 160 16-176 1-163 (198)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.6E-29 3.4E-34 186.6 13.6 153 16-173 1-163 (164)
103 PLN00223 ADP-ribosylation fact 100.0 1.6E-28 3.5E-33 183.9 19.2 159 12-177 15-179 (181)
104 cd00157 Rho Rho (Ras homology) 100.0 3E-28 6.6E-33 180.6 20.4 157 15-173 1-170 (171)
105 cd04158 ARD1 ARD1 subfamily. 100.0 1.7E-28 3.6E-33 182.0 18.7 155 16-177 1-162 (169)
106 cd04102 RabL3 RabL3 (Rab-like3 100.0 5.4E-28 1.2E-32 183.2 21.0 147 15-161 1-175 (202)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.4E-29 1.2E-33 182.9 14.7 152 15-173 1-158 (159)
108 PTZ00132 GTP-binding nuclear p 100.0 1E-27 2.3E-32 184.4 22.5 167 9-178 4-170 (215)
109 smart00177 ARF ARF-like small 100.0 8.3E-29 1.8E-33 184.6 15.7 156 13-175 12-173 (175)
110 PTZ00133 ADP-ribosylation fact 100.0 4.9E-28 1.1E-32 181.5 19.5 160 12-178 15-180 (182)
111 KOG0393 Ras-related small GTPa 100.0 3.5E-29 7.5E-34 184.8 11.9 164 12-177 2-180 (198)
112 cd04154 Arl2 Arl2 subfamily. 100.0 7E-28 1.5E-32 179.3 18.3 158 9-173 9-172 (173)
113 cd01893 Miro1 Miro1 subfamily. 100.0 1.7E-27 3.8E-32 176.0 19.1 159 15-176 1-164 (166)
114 cd04157 Arl6 Arl6 subfamily. 100.0 2.5E-27 5.5E-32 174.1 17.0 152 16-173 1-161 (162)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.6E-27 1.2E-31 174.6 17.8 154 13-173 14-173 (174)
116 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.3E-27 7.1E-32 174.7 15.0 153 16-173 1-166 (167)
117 PTZ00099 rab6; Provisional 100.0 3.6E-26 7.8E-31 170.1 20.3 140 37-176 3-142 (176)
118 cd04156 ARLTS1 ARLTS1 subfamil 100.0 8.5E-27 1.9E-31 171.1 15.7 152 16-173 1-159 (160)
119 PLN00023 GTP-binding protein; 99.9 4.3E-26 9.3E-31 181.0 20.7 143 9-151 16-189 (334)
120 cd00879 Sar1 Sar1 subfamily. 99.9 2.4E-26 5.2E-31 173.5 18.1 157 11-174 16-189 (190)
121 cd04151 Arl1 Arl1 subfamily. 99.9 7.1E-27 1.5E-31 171.4 14.5 151 16-173 1-157 (158)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.3E-26 2.8E-31 169.8 15.9 151 16-173 1-157 (158)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.3E-26 4.9E-31 170.0 17.1 152 16-173 1-166 (167)
124 smart00178 SAR Sar1p-like memb 99.9 1.7E-25 3.7E-30 168.1 17.8 156 12-174 15-183 (184)
125 PF00025 Arf: ADP-ribosylation 99.9 1.6E-25 3.4E-30 166.8 16.5 158 11-175 11-175 (175)
126 cd04159 Arl10_like Arl10-like 99.9 4.8E-25 1E-29 160.9 17.0 151 17-173 2-158 (159)
127 cd01897 NOG NOG1 is a nucleola 99.9 3.9E-25 8.4E-30 163.5 16.4 156 15-175 1-167 (168)
128 KOG0073 GTP-binding ADP-ribosy 99.9 1.6E-24 3.5E-29 152.5 17.8 161 11-178 13-180 (185)
129 cd01890 LepA LepA subfamily. 99.9 6E-25 1.3E-29 164.2 16.8 154 16-175 2-176 (179)
130 cd01898 Obg Obg subfamily. Th 99.9 5E-25 1.1E-29 163.2 15.3 157 16-174 2-169 (170)
131 TIGR00231 small_GTP small GTP- 99.9 3.2E-24 7E-29 156.1 18.7 158 14-172 1-160 (161)
132 cd01878 HflX HflX subfamily. 99.9 8.8E-25 1.9E-29 166.8 16.0 157 11-174 38-203 (204)
133 cd04155 Arl3 Arl3 subfamily. 99.9 4.1E-24 9E-29 158.8 18.7 154 10-173 10-172 (173)
134 PRK12299 obgE GTPase CgtA; Rev 99.9 2.1E-24 4.5E-29 175.0 18.3 164 13-177 157-329 (335)
135 PRK03003 GTP-binding protein D 99.9 1.7E-24 3.7E-29 184.0 18.2 204 12-222 209-434 (472)
136 TIGR03594 GTPase_EngA ribosome 99.9 5E-24 1.1E-28 179.9 19.3 203 12-222 170-396 (429)
137 cd04171 SelB SelB subfamily. 99.9 4.9E-24 1.1E-28 156.8 16.9 152 15-173 1-163 (164)
138 KOG1673 Ras GTPases [General f 99.9 1.8E-24 3.9E-29 150.9 13.1 173 4-177 10-187 (205)
139 COG1100 GTPase SAR1 and relate 99.9 3.5E-23 7.6E-28 159.6 20.6 170 14-183 5-192 (219)
140 TIGR02528 EutP ethanolamine ut 99.9 2.3E-24 5.1E-29 155.2 12.9 134 16-172 2-141 (142)
141 cd00882 Ras_like_GTPase Ras-li 99.9 7.4E-23 1.6E-27 147.6 18.0 153 19-172 1-156 (157)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.4E-23 1.4E-27 151.5 16.5 153 16-175 2-165 (168)
143 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-23 2.8E-28 151.5 12.4 148 15-171 1-156 (156)
144 PRK04213 GTP-binding protein; 99.9 5.4E-24 1.2E-28 162.1 11.0 153 11-176 6-192 (201)
145 TIGR02729 Obg_CgtA Obg family 99.9 6.3E-23 1.4E-27 166.2 17.7 161 13-175 156-328 (329)
146 cd01879 FeoB Ferrous iron tran 99.9 1.1E-22 2.4E-27 148.7 16.1 147 19-174 1-155 (158)
147 PRK00093 GTP-binding protein D 99.9 7.2E-23 1.6E-27 173.1 17.4 204 12-222 171-396 (435)
148 TIGR03156 GTP_HflX GTP-binding 99.9 6.8E-23 1.5E-27 167.4 16.2 155 12-174 187-350 (351)
149 cd01891 TypA_BipA TypA (tyrosi 99.9 5.1E-23 1.1E-27 155.9 13.6 149 15-167 3-173 (194)
150 KOG3883 Ras family small GTPas 99.9 5.1E-22 1.1E-26 138.4 17.3 163 13-175 8-174 (198)
151 KOG0070 GTP-binding ADP-ribosy 99.9 3.9E-23 8.5E-28 149.1 11.7 159 11-176 14-178 (181)
152 TIGR00436 era GTP-binding prot 99.9 1.6E-22 3.5E-27 160.5 15.4 152 16-175 2-163 (270)
153 cd01881 Obg_like The Obg-like 99.9 1E-22 2.3E-27 151.5 13.2 155 19-174 1-175 (176)
154 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.7E-22 8E-27 145.6 14.8 146 15-175 2-156 (157)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 7.9E-22 1.7E-26 165.5 17.3 154 12-179 201-363 (442)
156 PRK09518 bifunctional cytidyla 99.9 2.7E-21 5.8E-26 171.7 20.9 202 13-222 449-673 (712)
157 PRK12297 obgE GTPase CgtA; Rev 99.9 3E-21 6.5E-26 160.4 19.5 159 15-178 159-329 (424)
158 PRK15494 era GTPase Era; Provi 99.9 8.7E-22 1.9E-26 160.6 16.1 154 12-175 50-215 (339)
159 PF08477 Miro: Miro-like prote 99.9 7.8E-22 1.7E-26 137.7 13.6 114 16-130 1-119 (119)
160 cd00881 GTP_translation_factor 99.9 1.3E-21 2.9E-26 147.1 15.0 156 16-175 1-186 (189)
161 TIGR01393 lepA GTP-binding pro 99.9 2.2E-21 4.8E-26 168.1 18.1 157 13-175 2-179 (595)
162 COG1160 Predicted GTPases [Gen 99.9 1.5E-21 3.2E-26 159.3 15.7 205 13-223 177-404 (444)
163 cd01889 SelB_euk SelB subfamil 99.9 1.3E-21 2.8E-26 148.0 14.0 157 15-175 1-185 (192)
164 PRK03003 GTP-binding protein D 99.9 1.5E-21 3.3E-26 166.0 16.0 154 13-177 37-200 (472)
165 PRK05291 trmE tRNA modificatio 99.9 2.1E-21 4.6E-26 163.7 16.3 149 13-177 214-371 (449)
166 PRK15467 ethanolamine utilizat 99.9 2.6E-21 5.6E-26 141.7 14.5 141 16-178 3-149 (158)
167 cd01894 EngA1 EngA1 subfamily. 99.9 1.4E-21 3E-26 142.6 12.9 146 18-174 1-156 (157)
168 PRK12296 obgE GTPase CgtA; Rev 99.9 4.9E-21 1.1E-25 161.1 17.4 165 12-179 157-343 (500)
169 PRK11058 GTPase HflX; Provisio 99.9 4.4E-21 9.6E-26 160.2 17.0 158 14-177 197-363 (426)
170 TIGR00487 IF-2 translation ini 99.9 1.2E-20 2.5E-25 163.0 19.2 154 11-172 84-246 (587)
171 cd01895 EngA2 EngA2 subfamily. 99.9 1.2E-20 2.6E-25 139.7 15.7 155 14-174 2-173 (174)
172 PRK00454 engB GTP-binding prot 99.9 2.3E-20 4.9E-25 141.5 17.0 156 11-175 21-193 (196)
173 KOG0075 GTP-binding ADP-ribosy 99.9 2.4E-21 5.2E-26 134.1 10.4 154 13-175 19-181 (186)
174 cd01888 eIF2_gamma eIF2-gamma 99.9 9.4E-21 2E-25 144.4 14.5 155 15-175 1-198 (203)
175 PRK12298 obgE GTPase CgtA; Rev 99.9 2.2E-20 4.8E-25 154.4 17.7 162 14-177 159-334 (390)
176 cd04163 Era Era subfamily. Er 99.9 1.7E-20 3.7E-25 137.8 15.4 156 14-174 3-167 (168)
177 TIGR00475 selB selenocysteine- 99.9 1.8E-20 3.9E-25 162.4 17.8 152 15-175 1-165 (581)
178 TIGR03598 GTPase_YsxC ribosome 99.9 1.8E-20 4E-25 140.1 14.7 149 10-165 14-179 (179)
179 CHL00189 infB translation init 99.9 3.9E-20 8.5E-25 162.1 17.8 154 11-174 241-408 (742)
180 PRK00089 era GTPase Era; Revie 99.9 3.1E-20 6.7E-25 149.3 15.4 157 14-175 5-170 (292)
181 PRK05306 infB translation init 99.8 5.4E-20 1.2E-24 162.5 18.0 155 10-173 286-449 (787)
182 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 5.6E-21 1.2E-25 137.8 9.0 164 12-178 8-171 (216)
183 PRK05433 GTP-binding protein L 99.8 1.4E-19 3E-24 157.2 17.9 158 12-175 5-183 (600)
184 PF00009 GTP_EFTU: Elongation 99.8 2.5E-20 5.5E-25 140.4 11.7 159 13-175 2-186 (188)
185 TIGR00437 feoB ferrous iron tr 99.8 7.1E-20 1.5E-24 158.8 15.8 146 21-175 1-154 (591)
186 PRK00093 GTP-binding protein D 99.8 1.7E-19 3.6E-24 152.6 17.5 146 15-173 2-159 (435)
187 TIGR03594 GTPase_EngA ribosome 99.8 9.5E-20 2.1E-24 153.9 15.3 147 16-175 1-159 (429)
188 COG1159 Era GTPase [General fu 99.8 1.1E-19 2.4E-24 141.0 13.8 158 13-175 5-171 (298)
189 cd00880 Era_like Era (E. coli 99.8 1.6E-19 3.5E-24 131.4 13.7 151 19-174 1-162 (163)
190 PRK09554 feoB ferrous iron tra 99.8 5.6E-19 1.2E-23 156.7 18.4 153 14-175 3-167 (772)
191 KOG0071 GTP-binding ADP-ribosy 99.8 7.5E-19 1.6E-23 120.9 14.7 156 13-175 16-177 (180)
192 cd01896 DRG The developmentall 99.8 1.5E-18 3.3E-23 134.7 18.4 151 16-175 2-225 (233)
193 TIGR00491 aIF-2 translation in 99.8 7.7E-19 1.7E-23 151.5 17.7 155 14-175 4-215 (590)
194 PRK09518 bifunctional cytidyla 99.8 6.4E-19 1.4E-23 156.6 17.6 156 11-176 272-436 (712)
195 TIGR00483 EF-1_alpha translati 99.8 2.4E-19 5.2E-24 151.0 13.3 159 10-169 3-200 (426)
196 KOG0076 GTP-binding ADP-ribosy 99.8 8.4E-20 1.8E-24 130.0 8.7 162 11-178 14-189 (197)
197 PRK12317 elongation factor 1-a 99.8 2.9E-19 6.3E-24 150.5 13.3 157 11-169 3-198 (425)
198 KOG4423 GTP-binding protein-li 99.8 6.5E-22 1.4E-26 142.2 -2.9 167 11-177 22-195 (229)
199 COG1160 Predicted GTPases [Gen 99.8 3.6E-19 7.8E-24 145.4 12.1 149 15-175 4-164 (444)
200 cd04105 SR_beta Signal recogni 99.8 9.1E-19 2E-23 133.3 13.6 117 16-133 2-123 (203)
201 COG0486 ThdF Predicted GTPase 99.8 9.5E-19 2.1E-23 143.3 14.4 155 12-178 215-378 (454)
202 cd04166 CysN_ATPS CysN_ATPS su 99.8 7.3E-19 1.6E-23 134.5 12.3 149 16-167 1-185 (208)
203 cd01876 YihA_EngB The YihA (En 99.8 2.1E-18 4.6E-23 126.9 14.4 150 16-174 1-169 (170)
204 PF10662 PduV-EutP: Ethanolami 99.8 2.3E-18 4.9E-23 121.6 13.2 134 16-172 3-142 (143)
205 PRK10218 GTP-binding protein; 99.8 4.9E-18 1.1E-22 147.1 17.7 159 13-175 4-194 (607)
206 COG2229 Predicted GTPase [Gene 99.8 1.3E-17 2.8E-22 120.4 16.9 158 11-174 7-176 (187)
207 TIGR01394 TypA_BipA GTP-bindin 99.8 2.1E-18 4.5E-23 149.5 15.0 157 15-175 2-190 (594)
208 cd01884 EF_Tu EF-Tu subfamily. 99.8 8.6E-18 1.9E-22 126.9 16.2 148 14-165 2-172 (195)
209 PRK04004 translation initiatio 99.8 1.1E-17 2.3E-22 145.0 18.6 157 12-175 4-217 (586)
210 TIGR03680 eif2g_arch translati 99.8 3.3E-18 7.1E-23 143.0 14.5 162 12-175 2-195 (406)
211 PRK10512 selenocysteinyl-tRNA- 99.8 1.1E-17 2.3E-22 145.7 17.8 152 16-175 2-165 (614)
212 KOG1423 Ras-like GTPase ERA [C 99.8 7E-18 1.5E-22 130.8 14.5 164 7-175 65-270 (379)
213 PRK04000 translation initiatio 99.8 4.4E-18 9.6E-23 142.2 14.5 161 9-175 4-200 (411)
214 cd04168 TetM_like Tet(M)-like 99.8 7.4E-18 1.6E-22 131.1 13.4 114 16-133 1-130 (237)
215 cd04167 Snu114p Snu114p subfam 99.8 1.2E-17 2.6E-22 128.3 12.8 113 16-132 2-136 (213)
216 PRK12736 elongation factor Tu; 99.8 3.2E-17 7E-22 136.6 15.7 150 9-162 7-179 (394)
217 COG2262 HflX GTPases [General 99.8 5.8E-17 1.3E-21 130.8 16.6 162 10-178 188-358 (411)
218 KOG0074 GTP-binding ADP-ribosy 99.8 1.3E-17 2.9E-22 114.9 10.5 159 9-173 12-176 (185)
219 TIGR00485 EF-Tu translation el 99.8 3.8E-17 8.2E-22 136.3 15.4 150 9-162 7-179 (394)
220 PRK12735 elongation factor Tu; 99.8 5.4E-17 1.2E-21 135.3 16.0 153 7-163 5-180 (396)
221 COG0370 FeoB Fe2+ transport sy 99.7 5.9E-17 1.3E-21 138.1 15.9 153 14-175 3-163 (653)
222 COG0218 Predicted GTPase [Gene 99.7 1.3E-16 2.9E-21 117.7 15.6 160 10-176 20-197 (200)
223 COG1084 Predicted GTPase [Gene 99.7 5.7E-17 1.2E-21 127.2 14.3 161 9-175 163-335 (346)
224 cd01883 EF1_alpha Eukaryotic e 99.7 1.1E-17 2.4E-22 128.9 10.1 147 16-165 1-194 (219)
225 KOG1707 Predicted Ras related/ 99.7 1.1E-17 2.3E-22 139.5 10.4 162 12-175 7-174 (625)
226 KOG0072 GTP-binding ADP-ribosy 99.7 4.6E-18 1E-22 117.5 6.6 157 12-175 16-178 (182)
227 KOG1489 Predicted GTP-binding 99.7 1.2E-16 2.6E-21 124.6 13.6 157 14-174 196-365 (366)
228 CHL00071 tufA elongation facto 99.7 3.1E-16 6.7E-21 131.3 16.4 154 7-164 5-181 (409)
229 cd04165 GTPBP1_like GTPBP1-lik 99.7 5.7E-16 1.2E-20 119.5 15.5 153 16-172 1-219 (224)
230 cd04104 p47_IIGP_like p47 (47- 99.7 9E-16 2E-20 116.4 16.2 160 14-181 1-189 (197)
231 COG0532 InfB Translation initi 99.7 9.1E-16 2E-20 127.6 17.4 153 13-175 4-169 (509)
232 COG1163 DRG Predicted GTPase [ 99.7 6E-16 1.3E-20 121.2 15.2 155 12-175 61-288 (365)
233 PLN00043 elongation factor 1-a 99.7 1.7E-16 3.6E-21 133.8 12.0 152 11-166 4-203 (447)
234 cd04169 RF3 RF3 subfamily. Pe 99.7 1.3E-15 2.9E-20 120.4 15.8 116 15-134 3-138 (267)
235 cd01885 EF2 EF2 (for archaea a 99.7 5.4E-16 1.2E-20 119.1 12.6 114 15-132 1-138 (222)
236 cd01850 CDC_Septin CDC/Septin. 99.7 1.1E-15 2.4E-20 121.4 14.8 143 13-160 3-186 (276)
237 PRK00049 elongation factor Tu; 99.7 1.9E-15 4.1E-20 126.0 16.7 153 7-163 5-180 (396)
238 PRK05124 cysN sulfate adenylyl 99.7 6E-16 1.3E-20 131.4 13.8 156 10-168 23-217 (474)
239 TIGR02034 CysN sulfate adenyly 99.7 8.5E-16 1.8E-20 128.5 13.4 150 15-167 1-188 (406)
240 PLN03126 Elongation factor Tu; 99.7 1.6E-15 3.4E-20 128.5 14.9 151 10-164 77-250 (478)
241 PTZ00141 elongation factor 1- 99.7 2.2E-15 4.7E-20 127.1 15.5 152 11-166 4-203 (446)
242 KOG0462 Elongation factor-type 99.7 1.1E-15 2.4E-20 126.7 13.3 161 11-175 57-234 (650)
243 cd01886 EF-G Elongation factor 99.7 1.2E-15 2.7E-20 120.6 12.2 140 16-159 1-158 (270)
244 cd04170 EF-G_bact Elongation f 99.7 6.3E-16 1.4E-20 122.7 10.2 144 16-165 1-162 (268)
245 PLN03127 Elongation factor Tu; 99.7 6.2E-15 1.3E-19 124.3 16.3 159 10-172 57-248 (447)
246 COG0536 Obg Predicted GTPase [ 99.7 3.1E-15 6.6E-20 118.1 13.4 165 14-179 159-336 (369)
247 KOG1145 Mitochondrial translat 99.6 1.1E-14 2.5E-19 120.8 16.5 150 11-173 150-313 (683)
248 PRK00741 prfC peptide chain re 99.6 6.3E-15 1.4E-19 126.3 15.4 118 12-133 8-145 (526)
249 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 2.9E-15 6.3E-20 115.2 11.8 160 16-178 1-178 (232)
250 cd01899 Ygr210 Ygr210 subfamil 99.6 9.1E-15 2E-19 117.9 15.0 81 17-97 1-110 (318)
251 PRK05506 bifunctional sulfate 99.6 4.8E-15 1E-19 130.5 14.5 154 10-166 20-211 (632)
252 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.2E-14 2.7E-19 110.1 14.8 158 15-175 1-183 (196)
253 PRK13351 elongation factor G; 99.6 5.2E-15 1.1E-19 131.5 14.3 118 12-133 6-139 (687)
254 TIGR00503 prfC peptide chain r 99.6 1.8E-14 3.9E-19 123.6 16.3 119 10-132 7-145 (527)
255 KOG1191 Mitochondrial GTPase [ 99.6 1.8E-15 4E-20 124.2 9.5 169 11-180 265-454 (531)
256 PF01926 MMR_HSR1: 50S ribosom 99.6 2.6E-14 5.7E-19 99.2 13.6 106 16-128 1-116 (116)
257 PTZ00327 eukaryotic translatio 99.6 1.2E-14 2.7E-19 122.4 13.4 161 11-174 31-231 (460)
258 COG5256 TEF1 Translation elong 99.6 1E-14 2.2E-19 117.9 11.5 190 11-206 4-236 (428)
259 COG3596 Predicted GTPase [Gene 99.6 7.7E-15 1.7E-19 112.8 10.2 163 11-176 36-222 (296)
260 PRK12739 elongation factor G; 99.6 6.6E-14 1.4E-18 124.4 15.9 119 11-133 5-139 (691)
261 KOG3905 Dynein light intermedi 99.6 9.3E-14 2E-18 108.9 14.6 163 13-178 51-292 (473)
262 COG0481 LepA Membrane GTPase L 99.6 7.3E-14 1.6E-18 114.4 14.2 160 10-175 5-185 (603)
263 TIGR00484 EF-G translation elo 99.6 3.9E-14 8.4E-19 125.9 13.3 120 11-134 7-142 (689)
264 PRK09866 hypothetical protein; 99.6 5.8E-13 1.3E-17 113.9 18.5 108 64-173 231-350 (741)
265 COG4917 EutP Ethanolamine util 99.6 5.4E-14 1.2E-18 95.3 9.7 135 16-173 3-143 (148)
266 PRK00007 elongation factor G; 99.5 2.8E-13 6.1E-18 120.4 16.7 119 11-133 7-141 (693)
267 PRK09602 translation-associate 99.5 3.5E-13 7.5E-18 111.9 15.6 83 15-97 2-113 (396)
268 KOG0077 Vesicle coat complex C 99.5 6.1E-14 1.3E-18 99.6 8.7 155 12-173 18-190 (193)
269 TIGR00490 aEF-2 translation el 99.5 4.9E-14 1.1E-18 125.6 9.5 126 4-133 9-152 (720)
270 PF09439 SRPRB: Signal recogni 99.5 4.2E-14 9E-19 104.4 7.4 117 14-134 3-127 (181)
271 KOG1490 GTP-binding protein CR 99.5 2.8E-13 6E-18 111.7 12.2 179 9-190 163-355 (620)
272 PRK14845 translation initiatio 99.5 1.5E-12 3.3E-17 118.2 16.7 143 26-175 473-672 (1049)
273 KOG1707 Predicted Ras related/ 99.5 9.7E-13 2.1E-17 110.2 14.2 163 7-175 418-582 (625)
274 PRK12740 elongation factor G; 99.5 9.7E-13 2.1E-17 116.9 15.1 110 20-133 1-126 (668)
275 PF05783 DLIC: Dynein light in 99.5 1E-12 2.3E-17 110.6 13.9 165 12-179 23-267 (472)
276 cd01853 Toc34_like Toc34-like 99.5 9.4E-13 2E-17 102.9 12.7 122 9-133 26-163 (249)
277 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.2E-12 2.5E-17 104.1 13.3 124 9-135 33-169 (313)
278 COG2895 CysN GTPases - Sulfate 99.5 1E-12 2.2E-17 104.3 12.3 153 11-166 3-193 (431)
279 smart00010 small_GTPase Small 99.5 4.1E-13 8.9E-18 93.9 9.2 114 15-165 1-115 (124)
280 KOG0090 Signal recognition par 99.5 6.9E-13 1.5E-17 98.2 10.2 155 14-174 38-237 (238)
281 KOG1144 Translation initiation 99.4 5.7E-13 1.2E-17 114.1 10.3 170 13-189 474-700 (1064)
282 PTZ00258 GTP-binding protein; 99.4 3.6E-12 7.7E-17 104.9 14.1 87 11-97 18-126 (390)
283 cd00066 G-alpha G protein alph 99.4 9.2E-12 2E-16 101.0 15.8 118 61-178 159-313 (317)
284 PF04548 AIG1: AIG1 family; I 99.4 2.6E-12 5.6E-17 98.5 11.9 160 15-178 1-188 (212)
285 PRK07560 elongation factor EF- 99.4 3.6E-12 7.7E-17 114.0 13.1 123 7-133 13-153 (731)
286 TIGR00101 ureG urease accessor 99.4 5.3E-12 1.1E-16 95.7 12.0 102 63-175 92-195 (199)
287 TIGR00157 ribosome small subun 99.4 1.6E-12 3.6E-17 101.6 9.2 96 74-173 24-120 (245)
288 PLN00116 translation elongatio 99.4 1.4E-12 3.1E-17 118.0 9.5 122 7-132 12-163 (843)
289 smart00275 G_alpha G protein a 99.4 3.2E-11 7E-16 98.6 14.8 118 62-179 183-337 (342)
290 PTZ00416 elongation factor 2; 99.4 3.1E-12 6.7E-17 115.6 9.6 120 9-132 14-157 (836)
291 KOG0458 Elongation factor 1 al 99.4 8.3E-12 1.8E-16 104.8 11.3 203 11-216 174-420 (603)
292 PRK13768 GTPase; Provisional 99.4 7.4E-12 1.6E-16 98.4 10.5 109 64-175 98-246 (253)
293 PRK09601 GTP-binding protein Y 99.3 4.9E-11 1.1E-15 97.2 14.7 83 15-97 3-107 (364)
294 TIGR00073 hypB hydrogenase acc 99.3 2.5E-11 5.5E-16 92.7 11.9 153 11-174 19-205 (207)
295 PRK09435 membrane ATPase/prote 99.3 4.6E-11 1E-15 96.7 13.3 104 62-176 148-260 (332)
296 KOG1486 GTP-binding protein DR 99.3 1.7E-10 3.6E-15 87.9 14.6 106 14-121 62-175 (364)
297 TIGR02836 spore_IV_A stage IV 99.3 8E-11 1.7E-15 96.3 13.5 163 4-171 7-232 (492)
298 COG1217 TypA Predicted membran 99.3 1E-10 2.3E-15 96.0 13.7 159 13-175 4-194 (603)
299 KOG0461 Selenocysteine-specifi 99.3 9.7E-11 2.1E-15 92.9 13.1 160 12-175 5-192 (522)
300 PF00350 Dynamin_N: Dynamin fa 99.3 7.4E-11 1.6E-15 87.0 11.9 62 65-129 103-168 (168)
301 PF05049 IIGP: Interferon-indu 99.3 2.7E-11 5.8E-16 98.9 10.2 162 11-180 32-222 (376)
302 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.7E-10 3.8E-15 89.2 13.4 140 12-163 37-183 (225)
303 KOG1532 GTPase XAB1, interacts 99.3 3.9E-10 8.5E-15 87.0 14.8 169 10-180 15-268 (366)
304 cd01900 YchF YchF subfamily. 99.3 1.1E-10 2.3E-15 92.3 11.8 81 17-97 1-103 (274)
305 PF03029 ATP_bind_1: Conserved 99.2 7.7E-12 1.7E-16 97.2 4.2 111 64-174 92-235 (238)
306 COG0012 Predicted GTPase, prob 99.2 9.9E-10 2.1E-14 88.6 15.3 84 14-97 2-108 (372)
307 PF00735 Septin: Septin; Inte 99.2 2.2E-10 4.8E-15 91.2 11.4 139 13-155 3-180 (281)
308 COG5257 GCD11 Translation init 99.2 1.1E-10 2.4E-15 91.7 8.7 162 12-175 8-201 (415)
309 TIGR00993 3a0901s04IAP86 chlor 99.2 6.2E-10 1.3E-14 96.0 13.1 120 12-133 116-250 (763)
310 COG3276 SelB Selenocysteine-sp 99.2 6.4E-10 1.4E-14 91.1 12.4 157 16-176 2-162 (447)
311 KOG0410 Predicted GTP binding 99.2 7E-11 1.5E-15 92.9 6.2 160 12-183 176-348 (410)
312 KOG0468 U5 snRNP-specific prot 99.2 2.2E-10 4.8E-15 97.6 9.6 126 2-131 116-261 (971)
313 TIGR00750 lao LAO/AO transport 99.1 1.2E-09 2.6E-14 88.1 13.5 104 62-176 126-238 (300)
314 KOG3886 GTP-binding protein [S 99.1 4.7E-10 1E-14 84.4 9.7 145 14-160 4-163 (295)
315 smart00053 DYNc Dynamin, GTPas 99.1 1.1E-09 2.4E-14 85.0 12.2 68 63-133 125-206 (240)
316 KOG0082 G-protein alpha subuni 99.1 1.8E-09 4E-14 87.1 13.8 119 62-180 194-348 (354)
317 COG0480 FusA Translation elong 99.1 7.6E-10 1.7E-14 97.4 11.0 120 11-134 7-143 (697)
318 PF03308 ArgK: ArgK protein; 99.1 2.4E-10 5.2E-15 88.1 6.5 153 12-176 27-230 (266)
319 COG0378 HypB Ni2+-binding GTPa 99.0 1.7E-09 3.7E-14 79.7 9.2 79 89-175 120-200 (202)
320 COG1703 ArgK Putative periplas 99.0 4.1E-09 9E-14 82.5 11.8 154 12-176 49-254 (323)
321 KOG0705 GTPase-activating prot 99.0 1.3E-09 2.8E-14 91.1 9.0 167 11-184 27-197 (749)
322 COG0050 TufB GTPases - transla 99.0 1.1E-08 2.4E-13 79.8 12.4 146 7-159 5-176 (394)
323 COG5019 CDC3 Septin family pro 99.0 1E-08 2.2E-13 82.5 12.0 117 12-133 21-176 (373)
324 cd01859 MJ1464 MJ1464. This f 98.9 4.1E-09 8.9E-14 76.9 7.7 95 76-176 2-96 (156)
325 PRK10463 hydrogenase nickel in 98.9 3.8E-09 8.3E-14 83.6 7.8 56 119-174 230-287 (290)
326 cd01855 YqeH YqeH. YqeH is an 98.9 7.5E-09 1.6E-13 78.0 9.1 93 76-175 24-124 (190)
327 KOG1487 GTP-binding protein DR 98.9 9.9E-09 2.1E-13 78.7 9.4 96 15-112 60-163 (358)
328 COG4108 PrfC Peptide chain rel 98.9 8.7E-09 1.9E-13 84.3 9.6 133 13-151 11-163 (528)
329 TIGR03348 VI_IcmF type VI secr 98.9 1.6E-08 3.6E-13 94.8 12.2 113 17-134 114-258 (1169)
330 PRK12289 GTPase RsgA; Reviewed 98.9 1.7E-08 3.6E-13 82.8 10.6 91 79-174 82-173 (352)
331 KOG1547 Septin CDC10 and relat 98.9 4.3E-08 9.3E-13 74.4 11.5 151 14-169 46-236 (336)
332 KOG2655 Septin family protein 98.9 3.8E-08 8.3E-13 79.7 12.0 145 12-161 19-202 (366)
333 KOG3887 Predicted small GTPase 98.9 3.5E-08 7.5E-13 75.0 10.9 171 14-187 27-213 (347)
334 KOG1954 Endocytosis/signaling 98.9 3.2E-08 7E-13 79.5 10.9 127 7-136 51-228 (532)
335 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 7.5E-09 1.6E-13 74.2 6.4 54 16-73 85-138 (141)
336 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.7E-08 3.6E-13 80.9 8.7 88 81-173 73-161 (287)
337 PF00503 G-alpha: G-protein al 98.8 6E-08 1.3E-12 81.2 12.0 112 63-174 236-388 (389)
338 cd04178 Nucleostemin_like Nucl 98.8 1.4E-08 3.1E-13 75.1 6.9 58 12-73 115-172 (172)
339 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.8E-08 3.9E-13 73.6 7.2 57 13-73 101-157 (157)
340 PRK00098 GTPase RsgA; Reviewed 98.8 2.6E-08 5.7E-13 80.2 8.3 87 83-173 77-164 (298)
341 COG5258 GTPBP1 GTPase [General 98.8 1.6E-07 3.5E-12 75.9 12.2 158 11-172 114-335 (527)
342 KOG1143 Predicted translation 98.8 1.6E-08 3.4E-13 81.4 6.4 161 7-171 160-383 (591)
343 PRK12288 GTPase RsgA; Reviewed 98.8 6.3E-08 1.4E-12 79.4 10.0 88 84-174 118-206 (347)
344 COG1618 Predicted nucleotide k 98.7 1.6E-06 3.6E-11 62.1 14.6 147 12-175 3-175 (179)
345 TIGR00092 GTP-binding protein 98.7 7.2E-08 1.6E-12 78.9 8.5 83 15-97 3-108 (368)
346 TIGR03597 GTPase_YqeH ribosome 98.7 9.9E-08 2.1E-12 78.9 8.9 94 73-173 50-150 (360)
347 KOG1491 Predicted GTP-binding 98.7 3.8E-08 8.3E-13 78.2 6.0 88 10-97 16-125 (391)
348 KOG0448 Mitofusin 1 GTPase, in 98.7 6.5E-07 1.4E-11 77.2 13.7 119 12-134 107-276 (749)
349 COG3523 IcmF Type VI protein s 98.7 1.3E-07 2.8E-12 87.1 10.1 164 18-189 129-331 (1188)
350 COG5192 BMS1 GTP-binding prote 98.7 2.7E-07 5.8E-12 78.1 10.9 140 10-161 65-211 (1077)
351 KOG0467 Translation elongation 98.7 5.7E-08 1.2E-12 84.3 7.0 118 10-131 5-136 (887)
352 cd01856 YlqF YlqF. Proteins o 98.7 8E-08 1.7E-12 71.2 6.9 58 12-73 113-170 (171)
353 KOG2486 Predicted GTPase [Gene 98.6 7.2E-08 1.6E-12 74.8 6.4 154 11-173 133-313 (320)
354 TIGR03596 GTPase_YlqF ribosome 98.6 1E-07 2.2E-12 76.0 7.4 58 12-73 116-173 (276)
355 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.4E-07 3.1E-12 75.6 8.1 58 12-73 119-176 (287)
356 cd01855 YqeH YqeH. YqeH is an 98.6 7.2E-08 1.6E-12 72.7 5.9 57 14-73 127-190 (190)
357 cd01859 MJ1464 MJ1464. This f 98.6 1.8E-07 3.8E-12 68.2 7.2 56 13-72 100-155 (156)
358 PF03193 DUF258: Protein of un 98.6 4.7E-08 1E-12 70.9 3.9 59 15-76 36-100 (161)
359 KOG0085 G protein subunit Galp 98.6 3.4E-08 7.4E-13 74.6 3.0 121 61-181 197-354 (359)
360 COG1161 Predicted GTPases [Gen 98.6 1.7E-07 3.7E-12 76.2 6.6 57 13-73 131-187 (322)
361 KOG0447 Dynamin-like GTP bindi 98.5 3.4E-06 7.4E-11 71.3 13.5 140 5-147 299-507 (980)
362 cd01849 YlqF_related_GTPase Yl 98.5 3.4E-07 7.3E-12 66.7 6.8 57 12-73 98-155 (155)
363 cd01858 NGP_1 NGP-1. Autoanti 98.5 5.9E-07 1.3E-11 65.6 8.0 87 83-174 5-93 (157)
364 cd01849 YlqF_related_GTPase Yl 98.5 9.2E-07 2E-11 64.4 8.0 84 88-175 1-84 (155)
365 PRK12288 GTPase RsgA; Reviewed 98.5 3.3E-07 7.1E-12 75.2 6.0 58 17-77 208-271 (347)
366 cd01851 GBP Guanylate-binding 98.4 7.1E-06 1.5E-10 63.4 12.4 88 11-99 4-104 (224)
367 KOG0460 Mitochondrial translat 98.4 1.8E-06 3.9E-11 69.0 8.9 148 9-159 49-218 (449)
368 PRK10416 signal recognition pa 98.4 4.1E-06 8.8E-11 68.0 11.1 145 14-170 114-304 (318)
369 PRK12289 GTPase RsgA; Reviewed 98.4 4.6E-07 1E-11 74.4 5.7 55 17-75 175-236 (352)
370 KOG0464 Elongation factor G [T 98.4 3.8E-07 8.3E-12 74.5 5.0 135 12-152 35-185 (753)
371 KOG0463 GTP-binding protein GP 98.4 3.5E-06 7.5E-11 68.3 10.2 155 10-169 129-351 (641)
372 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.7E-06 3.7E-11 62.0 7.4 77 81-163 6-84 (141)
373 TIGR00064 ftsY signal recognit 98.4 4.2E-06 9.2E-11 66.5 9.9 96 62-170 154-262 (272)
374 COG1162 Predicted GTPases [Gen 98.3 8.1E-07 1.8E-11 70.4 5.4 59 16-77 166-230 (301)
375 COG1126 GlnQ ABC-type polar am 98.3 5.4E-07 1.2E-11 67.8 4.0 137 16-178 30-186 (240)
376 cd01856 YlqF YlqF. Proteins o 98.3 2.4E-06 5.2E-11 63.3 7.3 91 77-175 10-100 (171)
377 KOG4273 Uncharacterized conser 98.3 9.7E-06 2.1E-10 62.3 10.4 155 15-176 5-222 (418)
378 TIGR03596 GTPase_YlqF ribosome 98.3 4.5E-06 9.8E-11 66.6 9.0 99 71-177 5-104 (276)
379 KOG0465 Mitochondrial elongati 98.3 3.4E-06 7.3E-11 72.0 8.4 117 12-132 37-169 (721)
380 PRK14974 cell division protein 98.3 1.5E-06 3.2E-11 70.9 6.1 96 63-171 223-325 (336)
381 PF09547 Spore_IV_A: Stage IV 98.3 2.1E-05 4.5E-10 65.0 12.4 161 6-171 9-232 (492)
382 PRK13796 GTPase YqeH; Provisio 98.3 6.6E-06 1.4E-10 68.2 9.5 94 74-174 57-157 (365)
383 cd03112 CobW_like The function 98.3 6.2E-06 1.3E-10 60.3 8.4 64 62-131 86-158 (158)
384 PRK13796 GTPase YqeH; Provisio 98.3 1.4E-06 3E-11 72.3 5.5 57 15-74 161-221 (365)
385 TIGR00157 ribosome small subun 98.3 1.4E-06 3.1E-11 68.2 5.3 58 15-76 121-184 (245)
386 TIGR03597 GTPase_YqeH ribosome 98.2 3.1E-06 6.7E-11 70.1 6.5 58 15-75 155-216 (360)
387 PRK09563 rbgA GTPase YlqF; Rev 98.2 7.6E-06 1.7E-10 65.7 8.3 100 70-177 7-107 (287)
388 PRK01889 GTPase RsgA; Reviewed 98.2 1E-05 2.2E-10 66.9 8.7 83 84-172 110-193 (356)
389 cd01854 YjeQ_engC YjeQ/EngC. 98.2 3.9E-06 8.5E-11 67.3 5.9 59 15-76 162-226 (287)
390 PRK00098 GTPase RsgA; Reviewed 98.1 5E-06 1.1E-10 67.1 6.0 58 15-75 165-228 (298)
391 KOG0099 G protein subunit Galp 98.1 2.4E-05 5.2E-10 60.5 9.3 72 61-132 200-282 (379)
392 KOG0466 Translation initiation 98.1 3.3E-06 7.1E-11 66.6 4.5 159 11-175 35-240 (466)
393 KOG3859 Septins (P-loop GTPase 98.1 1.1E-05 2.3E-10 63.0 7.0 61 12-72 40-104 (406)
394 TIGR01425 SRP54_euk signal rec 98.1 4E-05 8.6E-10 64.4 10.1 84 62-155 182-271 (429)
395 PRK14722 flhF flagellar biosyn 98.0 6.5E-05 1.4E-09 62.1 10.3 140 14-157 137-315 (374)
396 PF03266 NTPase_1: NTPase; In 98.0 2.3E-05 5.1E-10 57.7 7.0 135 16-164 1-163 (168)
397 PRK13695 putative NTPase; Prov 98.0 0.00017 3.8E-09 53.4 11.8 77 83-175 93-172 (174)
398 KOG0469 Elongation factor 2 [T 98.0 5.6E-05 1.2E-09 63.6 9.7 197 9-211 14-266 (842)
399 PF00448 SRP54: SRP54-type pro 98.0 7.6E-05 1.7E-09 56.5 9.5 85 63-158 84-175 (196)
400 COG4598 HisP ABC-type histidin 98.0 2.3E-05 5E-10 57.5 6.3 145 16-179 34-203 (256)
401 KOG1424 Predicted GTP-binding 98.0 1.1E-05 2.4E-10 67.7 5.1 58 12-73 312-369 (562)
402 cd03115 SRP The signal recogni 98.0 6.2E-05 1.3E-09 55.7 8.7 83 62-154 82-170 (173)
403 KOG0459 Polypeptide release fa 97.9 2.3E-05 5.1E-10 64.0 6.2 156 11-169 76-279 (501)
404 PRK14721 flhF flagellar biosyn 97.8 0.00041 8.9E-09 58.3 11.9 133 14-157 191-360 (420)
405 PRK00771 signal recognition pa 97.8 3.6E-05 7.8E-10 65.0 5.5 85 63-157 176-266 (437)
406 PRK11889 flhF flagellar biosyn 97.8 0.00042 9.1E-09 57.5 11.1 134 14-157 241-411 (436)
407 PRK12727 flagellar biosynthesi 97.8 0.00093 2E-08 57.5 13.3 135 14-158 350-519 (559)
408 COG1162 Predicted GTPases [Gen 97.8 0.00032 6.8E-09 55.9 9.7 88 84-174 77-165 (301)
409 TIGR00959 ffh signal recogniti 97.8 0.00025 5.5E-09 59.8 9.7 86 62-157 182-273 (428)
410 COG3640 CooC CO dehydrogenase 97.7 0.00039 8.5E-09 53.2 9.7 62 65-132 136-198 (255)
411 cd03114 ArgK-like The function 97.7 0.00018 3.9E-09 51.9 7.2 58 62-130 91-148 (148)
412 COG0523 Putative GTPases (G3E 97.7 0.0011 2.3E-08 54.0 12.3 98 63-169 85-194 (323)
413 KOG2484 GTPase [General functi 97.7 3.9E-05 8.5E-10 62.6 3.6 57 12-72 250-306 (435)
414 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00017 3.8E-09 42.5 5.3 45 85-130 12-58 (58)
415 COG1419 FlhF Flagellar GTP-bin 97.7 0.0011 2.3E-08 55.0 11.8 133 14-156 203-371 (407)
416 cd02042 ParA ParA and ParB of 97.7 0.00046 1E-08 46.4 8.2 82 17-110 2-84 (104)
417 PF11111 CENP-M: Centromere pr 97.7 0.004 8.6E-08 45.5 13.2 142 10-175 11-152 (176)
418 PRK11537 putative GTP-binding 97.6 0.0012 2.7E-08 53.7 11.9 85 63-157 91-186 (318)
419 PRK10867 signal recognition pa 97.6 0.00048 1E-08 58.2 9.4 86 62-157 183-274 (433)
420 cd00009 AAA The AAA+ (ATPases 97.6 0.0006 1.3E-08 48.2 8.7 25 14-38 19-43 (151)
421 PF02492 cobW: CobW/HypB/UreG, 97.6 0.00033 7.2E-09 52.2 7.4 80 63-149 85-170 (178)
422 KOG2485 Conserved ATP/GTP bind 97.6 0.00013 2.7E-09 58.0 5.2 62 11-73 140-206 (335)
423 cd02038 FleN-like FleN is a me 97.6 0.00042 9E-09 49.4 7.5 107 18-132 4-110 (139)
424 PRK05703 flhF flagellar biosyn 97.6 0.00088 1.9E-08 56.7 10.3 86 63-158 300-392 (424)
425 PRK12726 flagellar biosynthesi 97.5 0.0015 3.3E-08 54.0 10.6 86 63-158 286-377 (407)
426 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.0021 4.6E-08 46.1 10.2 23 16-38 28-50 (144)
427 PRK14723 flhF flagellar biosyn 97.5 0.0024 5.3E-08 57.4 12.4 135 15-157 186-357 (767)
428 PF13207 AAA_17: AAA domain; P 97.5 0.00011 2.3E-09 51.0 3.1 22 16-37 1-22 (121)
429 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.0014 3.1E-08 42.9 8.5 69 17-99 2-71 (99)
430 PF13555 AAA_29: P-loop contai 97.5 0.00013 2.9E-09 44.1 3.0 21 16-36 25-45 (62)
431 COG0563 Adk Adenylate kinase a 97.5 0.0001 2.2E-09 54.9 3.1 23 15-37 1-23 (178)
432 PRK08118 topology modulation p 97.4 0.00012 2.7E-09 53.9 3.2 23 15-37 2-24 (167)
433 PF05621 TniB: Bacterial TniB 97.4 0.0011 2.3E-08 53.0 8.5 105 10-128 57-189 (302)
434 PRK12724 flagellar biosynthesi 97.4 0.0032 6.9E-08 52.9 11.5 141 15-166 224-404 (432)
435 PRK07261 topology modulation p 97.4 0.00015 3.2E-09 53.7 3.2 22 16-37 2-23 (171)
436 PF13671 AAA_33: AAA domain; P 97.4 0.00015 3.3E-09 51.6 3.0 20 17-36 2-21 (143)
437 PRK06995 flhF flagellar biosyn 97.3 0.004 8.6E-08 53.4 11.6 138 15-164 257-430 (484)
438 PRK12723 flagellar biosynthesi 97.3 0.0039 8.4E-08 52.1 11.0 134 14-157 174-346 (388)
439 KOG1534 Putative transcription 97.3 0.00042 9.1E-09 52.2 4.6 22 15-36 4-25 (273)
440 PRK06731 flhF flagellar biosyn 97.3 0.005 1.1E-07 48.9 11.0 134 14-157 75-245 (270)
441 PRK01889 GTPase RsgA; Reviewed 97.3 0.00029 6.2E-09 58.3 4.1 25 15-39 196-220 (356)
442 cd02019 NK Nucleoside/nucleoti 97.2 0.00031 6.7E-09 43.7 3.0 21 17-37 2-22 (69)
443 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0033 7.2E-08 46.7 9.0 24 15-38 26-49 (177)
444 COG1116 TauB ABC-type nitrate/ 97.2 0.00034 7.4E-09 54.1 3.6 22 17-38 32-53 (248)
445 PF13521 AAA_28: AAA domain; P 97.2 0.00022 4.7E-09 52.3 2.2 22 16-37 1-22 (163)
446 COG1136 SalX ABC-type antimicr 97.2 0.0004 8.6E-09 53.3 3.7 22 16-37 33-54 (226)
447 KOG0780 Signal recognition par 97.2 0.0012 2.5E-08 54.2 6.4 97 15-111 102-239 (483)
448 KOG2423 Nucleolar GTPase [Gene 97.2 0.00015 3.3E-09 59.3 1.2 84 11-101 304-389 (572)
449 COG0194 Gmk Guanylate kinase [ 97.2 0.00023 5.1E-09 52.5 2.0 24 15-38 5-28 (191)
450 PF00005 ABC_tran: ABC transpo 97.2 0.00038 8.3E-09 49.3 3.1 22 16-37 13-34 (137)
451 COG3845 ABC-type uncharacteriz 97.1 0.0036 7.8E-08 52.9 9.1 53 76-130 148-201 (501)
452 cd03111 CpaE_like This protein 97.1 0.004 8.7E-08 42.2 7.8 100 20-128 6-106 (106)
453 PRK04195 replication factor C 97.1 0.011 2.3E-07 51.2 12.3 24 14-37 39-62 (482)
454 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0024 5.1E-08 45.1 6.7 23 15-37 23-45 (133)
455 cd03110 Fer4_NifH_child This p 97.1 0.0071 1.5E-07 44.9 9.6 86 61-155 91-176 (179)
456 PRK06217 hypothetical protein; 97.1 0.00049 1.1E-08 51.5 3.1 23 15-37 2-24 (183)
457 PRK14737 gmk guanylate kinase; 97.1 0.00046 1E-08 51.8 3.0 23 15-37 5-27 (186)
458 PF00004 AAA: ATPase family as 97.1 0.00054 1.2E-08 47.9 3.1 21 17-37 1-21 (132)
459 PF13238 AAA_18: AAA domain; P 97.1 0.00048 1.1E-08 47.9 2.8 21 17-37 1-21 (129)
460 TIGR02475 CobW cobalamin biosy 97.0 0.011 2.5E-07 48.6 11.1 99 63-170 93-224 (341)
461 TIGR00235 udk uridine kinase. 97.0 0.00069 1.5E-08 51.7 3.8 27 11-37 3-29 (207)
462 smart00382 AAA ATPases associa 97.0 0.00061 1.3E-08 47.7 3.2 25 15-39 3-27 (148)
463 PRK03839 putative kinase; Prov 97.0 0.00062 1.3E-08 50.7 3.2 22 16-37 2-23 (180)
464 PRK10078 ribose 1,5-bisphospho 97.0 0.00064 1.4E-08 51.0 3.3 22 16-37 4-25 (186)
465 PRK14738 gmk guanylate kinase; 97.0 0.00071 1.5E-08 51.7 3.5 26 12-37 11-36 (206)
466 cd00071 GMPK Guanosine monopho 97.0 0.00063 1.4E-08 48.4 3.0 21 17-37 2-22 (137)
467 COG3638 ABC-type phosphate/pho 97.0 0.00059 1.3E-08 52.3 2.9 21 16-36 32-52 (258)
468 PRK14530 adenylate kinase; Pro 97.0 0.00067 1.5E-08 52.1 3.2 22 15-36 4-25 (215)
469 KOG3929 Uncharacterized conser 97.0 0.00039 8.5E-09 53.9 1.8 147 11-160 42-236 (363)
470 TIGR02322 phosphon_PhnN phosph 97.0 0.00066 1.4E-08 50.5 3.0 22 16-37 3-24 (179)
471 cd02036 MinD Bacterial cell di 97.0 0.025 5.4E-07 41.7 11.4 84 64-154 64-147 (179)
472 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00075 1.6E-08 45.7 2.8 20 16-35 17-36 (107)
473 cd01131 PilT Pilus retraction 97.0 0.009 1.9E-07 45.3 9.1 21 17-37 4-24 (198)
474 PRK10646 ADP-binding protein; 96.9 0.0073 1.6E-07 43.6 7.9 22 16-37 30-51 (153)
475 cd01130 VirB11-like_ATPase Typ 96.9 0.00084 1.8E-08 50.3 3.2 24 14-37 25-48 (186)
476 COG3840 ThiQ ABC-type thiamine 96.9 0.00084 1.8E-08 49.6 3.0 22 15-36 26-47 (231)
477 PF04665 Pox_A32: Poxvirus A32 96.9 0.00086 1.9E-08 52.1 3.2 26 12-37 11-36 (241)
478 PF03205 MobB: Molybdopterin g 96.9 0.0009 1.9E-08 47.8 3.1 22 16-37 2-23 (140)
479 TIGR01360 aden_kin_iso1 adenyl 96.9 0.0008 1.7E-08 50.3 3.0 22 15-36 4-25 (188)
480 KOG3347 Predicted nucleotide k 96.9 0.00075 1.6E-08 48.0 2.6 25 12-36 5-29 (176)
481 PRK13949 shikimate kinase; Pro 96.9 0.00091 2E-08 49.4 3.2 21 16-36 3-23 (169)
482 PF07728 AAA_5: AAA domain (dy 96.9 0.00089 1.9E-08 47.5 3.1 22 16-37 1-22 (139)
483 KOG1533 Predicted GTPase [Gene 96.9 0.00068 1.5E-08 51.9 2.4 67 65-133 99-177 (290)
484 COG3839 MalK ABC-type sugar tr 96.9 0.001 2.3E-08 54.2 3.6 22 17-38 32-53 (338)
485 KOG0066 eIF2-interacting prote 96.9 0.012 2.6E-07 49.5 9.7 24 14-37 613-636 (807)
486 PRK14532 adenylate kinase; Pro 96.9 0.00096 2.1E-08 50.0 3.2 21 16-36 2-22 (188)
487 COG1120 FepC ABC-type cobalami 96.9 0.00087 1.9E-08 52.5 3.0 21 17-37 31-51 (258)
488 cd02023 UMPK Uridine monophosp 96.9 0.00087 1.9E-08 50.7 3.0 21 17-37 2-22 (198)
489 TIGR03263 guanyl_kin guanylate 96.9 0.00092 2E-08 49.7 3.0 22 16-37 3-24 (180)
490 PF14331 ImcF-related_N: ImcF- 96.9 0.006 1.3E-07 48.5 7.7 99 85-186 24-141 (266)
491 PRK05480 uridine/cytidine kina 96.8 0.0011 2.5E-08 50.5 3.5 25 13-37 5-29 (209)
492 PF03215 Rad17: Rad17 cell cyc 96.8 0.0086 1.9E-07 52.0 9.0 55 121-175 167-229 (519)
493 PRK05416 glmZ(sRNA)-inactivati 96.8 0.015 3.2E-07 46.7 9.7 74 16-115 8-83 (288)
494 cd03238 ABC_UvrA The excision 96.8 0.0012 2.5E-08 49.1 3.2 21 15-35 22-42 (176)
495 COG0802 Predicted ATPase or ki 96.8 0.0063 1.4E-07 43.5 6.7 24 14-37 25-48 (149)
496 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0012 2.5E-08 50.8 3.2 22 16-37 32-53 (218)
497 PLN03025 replication factor C 96.8 0.019 4.1E-07 46.9 10.4 23 15-37 35-57 (319)
498 COG1117 PstB ABC-type phosphat 96.8 0.0011 2.3E-08 50.3 2.8 21 17-37 36-56 (253)
499 PRK13851 type IV secretion sys 96.8 0.01 2.2E-07 48.8 8.8 25 13-37 161-185 (344)
500 PRK00625 shikimate kinase; Pro 96.8 0.0012 2.6E-08 48.9 3.1 21 16-36 2-22 (173)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-43 Score=255.49 Aligned_cols=175 Identities=48% Similarity=0.823 Sum_probs=166.9
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
....++.+||+|+|+.|||||+|+.++..+.+...+..|+|+++..+.+.+++..+.+++|||+|+++++++..++++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTA 166 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 166 (223)
|++|+|||+++.+||+.+..|+.++.++...+.|.++||||+|+.+.+.++.++++.|+..++++ |+++||+++.|+++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 027417 167 AFQTVVTEIYNILSRK 182 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~~ 182 (223)
+|..|+..+..++...
T Consensus 163 ~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999998876655443
No 2
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-40 Score=241.89 Aligned_cols=222 Identities=59% Similarity=0.946 Sum_probs=196.7
Q ss_pred CCccccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417 1 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT 80 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 80 (223)
|.+.....+..++.+||+++|++++|||-|+.++..+.+......|+|+++....+.+++..+..+||||+|+++|+.+.
T Consensus 1 ~~~~~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit 80 (222)
T KOG0087|consen 1 MARRRDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT 80 (222)
T ss_pred CCCccCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc
Confidence 55667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
.++++.+.+.++|||++.+.+|+.+..|+.+++.+.+.++++++||||+||...+.+..++++.+++..+..|+++||.+
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~ 160 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALD 160 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccc
Confidence 99999999999999999999999999999999999988999999999999999899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417 161 SSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 222 (223)
+.|++.+|+.++..+++...++...........+...+++...+.........+.++.+||.
T Consensus 161 ~tNVe~aF~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~ 222 (222)
T KOG0087|consen 161 ATNVEKAFERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS 222 (222)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence 99999999999999999999988766544333223334555555545454445555677774
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-40 Score=238.13 Aligned_cols=168 Identities=45% Similarity=0.749 Sum_probs=159.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...+||+|+|+.+||||||+-++..+.|.+...+|+|..+....+.+.+..+.+.||||+|+++|..+..+|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45699999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||+++.+||..++.|+.++.+....++-+.+||||+|+.+.+++..+++..+++..++.||++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999998877677788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027417 172 VTEIYNIL 179 (223)
Q Consensus 172 ~~~~~~~~ 179 (223)
++++....
T Consensus 163 a~~lp~~~ 170 (200)
T KOG0092|consen 163 AEKLPCSD 170 (200)
T ss_pred HHhccCcc
Confidence 98875443
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-39 Score=235.15 Aligned_cols=173 Identities=49% Similarity=0.860 Sum_probs=167.1
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
++++.+||+++|++|||||+|+.++..+.+...+..|+|+++..+.+..++..+.+++|||+|++++..+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+++|||+++..||+.+..|+..+..+....+|.++||||+|+...++++.+.++.+|.++|++|+|+||++|.||.+.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 027417 170 TVVTEIYNILSRK 182 (223)
Q Consensus 170 ~l~~~~~~~~~~~ 182 (223)
.|++.+.+.+...
T Consensus 168 ~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 168 SLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHhhcchh
Confidence 9999998755554
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-39 Score=231.67 Aligned_cols=167 Identities=37% Similarity=0.692 Sum_probs=157.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
-..+||+++|+.+|||||||.++..+.+...|.+|+|+++...++.+.+..+.+++|||+|+++|+.+...|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
+|||+++..||+...+|++.+...... .+.+++||||.||.+.++++.+++...++++++.|.++||+.|.||..+|..
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 999999999999999999999887665 4778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027417 171 VVTEIYNI 178 (223)
Q Consensus 171 l~~~~~~~ 178 (223)
|+..+...
T Consensus 180 Iaa~l~~~ 187 (221)
T KOG0094|consen 180 IAAALPGM 187 (221)
T ss_pred HHHhccCc
Confidence 88776444
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.8e-39 Score=223.43 Aligned_cols=169 Identities=44% Similarity=0.754 Sum_probs=159.0
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
....+.+||+|+|.+|+|||||+.+++...+++..+.|+|+++..+.+.+++..+++.||||+|+++|+.+...+++.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 45677899999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
++|+|||++.+++|..+..|++++..++ +.++..++|+||+|...++.++.+|..+|++++++-|+++||++.+|+...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999999998775 445677899999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 168 FQTVVTEIYN 177 (223)
Q Consensus 168 ~~~l~~~~~~ 177 (223)
|+.++.++++
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999987743
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-38 Score=227.47 Aligned_cols=174 Identities=53% Similarity=0.884 Sum_probs=166.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
+.+.+|++++|+.|||||+|+.+++...|.+..+.|+|+++....+.+++..+++++|||+|++.+.++...+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|||+++++||+.+..|+..+..+...+..++++|||+|+...++++.+|++.|++++++.++++||++++|++++|-.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q 027417 171 VVTEIYNILSRKVM 184 (223)
Q Consensus 171 l~~~~~~~~~~~~~ 184 (223)
....++.....-..
T Consensus 163 ta~~Iy~~~q~g~~ 176 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVF 176 (216)
T ss_pred HHHHHHHHHHhccc
Confidence 99999887776553
No 8
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.8e-37 Score=238.57 Aligned_cols=207 Identities=59% Similarity=0.965 Sum_probs=173.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 55779999999999999999999999988878888889888888888888899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|+.
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776668999999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417 171 VVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 171 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 222 (223)
|+..+.+....+...........+++.++++... .+. .+.+++||||
T Consensus 169 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~c~ 215 (216)
T PLN03110 169 ILLEIYHIISKKALAAQEAAANSGLPGQGTTINV---ADT--SGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHhhccccccccCcccccCcCcCCcccc---cCc--cCCCCCCCcC
Confidence 9999988765544333221121222333333333 112 3557788997
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=7.8e-38 Score=223.57 Aligned_cols=172 Identities=33% Similarity=0.659 Sum_probs=159.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
.+...+||+|+|++|+|||||++++++..+...+..|+|.++..+.+.+++..+++++|||+|+++|.++.-.+++.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHcC-CeEEEEccCCCC
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDLKDA--REVTTAEGKALAEAQG-LFFMETSALDSS 162 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 162 (223)
.+++||++++.||+++..|..++..+.. ...|+||+|||+|+... ++++...++.++...+ +|||++|||+..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999866543 46899999999998763 7899999999998775 789999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 027417 163 NVTAAFQTVVTEIYNILSR 181 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~~~~ 181 (223)
||.+.|+.+++.++.....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999999877665
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=8.1e-37 Score=231.82 Aligned_cols=167 Identities=40% Similarity=0.761 Sum_probs=153.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
++|+++|+.|||||||++++..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899888888888888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++.||+.+..|+..+......+.|+++||||+|+.+.+++..+++..+++.. ++.|++|||++|.||+++|++|+.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766667999999999999877889999999999885 789999999999999999999998
Q ss_pred HHHHHHhh
Q 027417 174 EIYNILSR 181 (223)
Q Consensus 174 ~~~~~~~~ 181 (223)
.+.+.+..
T Consensus 161 ~~~~~~~~ 168 (202)
T cd04120 161 DILKKMPL 168 (202)
T ss_pred HHHHhCcc
Confidence 88665433
No 11
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1e-37 Score=215.22 Aligned_cols=170 Identities=47% Similarity=0.805 Sum_probs=161.5
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
+.....++.+|+|++|+|||+|+.++..+.+..+|..|+|+++..+++.++|..+.++|||++|++.|+.+...+++..+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++++|||+++.+||.++..|++++...++ ..|-|+||||.|..+.+.+..++++.++...++.+|++|+++++|++..|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 99999999999999999999999998877 79999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 169 QTVVTEIYNIL 179 (223)
Q Consensus 169 ~~l~~~~~~~~ 179 (223)
.-|.+.++...
T Consensus 162 ~cit~qvl~~k 172 (198)
T KOG0079|consen 162 HCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 99998877665
No 12
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.1e-36 Score=230.49 Aligned_cols=164 Identities=35% Similarity=0.641 Sum_probs=147.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
+||+|+|++|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888998888877777777 7889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAF 168 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 168 (223)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876432 3468999999999998667788899999999998 689999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 169 QTVVTEIYNI 178 (223)
Q Consensus 169 ~~l~~~~~~~ 178 (223)
++|++.+.+.
T Consensus 161 ~~l~~~l~~~ 170 (201)
T cd04107 161 RFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHh
Confidence 9999888654
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.8e-36 Score=227.87 Aligned_cols=169 Identities=38% Similarity=0.668 Sum_probs=153.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.+..+||+|+|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999888777777878888777888899999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|||++++.+|+.+..|+..+..... +.|+||||||.|+.+.+.++.++++.+++..+++|++|||++|.||+++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 999999999999999999999977654 7999999999999887888999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027417 171 VVTEIYNILS 180 (223)
Q Consensus 171 l~~~~~~~~~ 180 (223)
|++.+..+..
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9987754433
No 14
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-36 Score=210.11 Aligned_cols=173 Identities=42% Similarity=0.754 Sum_probs=163.7
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
--++-+|++|+|+..+|||||+.++.+..+.+....|.|+++..+++.-....+.+++|||+|+++++.+...+++++++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 34677899999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+|+|||++|.+||..++.|...+..++-.+.|+|+|+||||+.+++.++.+.++.++..+|..||++||+.+.|++++|+
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE 176 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence 99999999999999999999999988877999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 027417 170 TVVTEIYNILSRK 182 (223)
Q Consensus 170 ~l~~~~~~~~~~~ 182 (223)
.++..+.+.+..+
T Consensus 177 ~lv~~Ic~kmses 189 (193)
T KOG0093|consen 177 RLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHhhhh
Confidence 9998887766554
No 15
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-37 Score=213.14 Aligned_cols=182 Identities=41% Similarity=0.740 Sum_probs=170.6
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
++++..+||+++|+.|+|||+|+++++.+.+++....|+|+++..+++.++++.+++++|||+|+++++++...+++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++|++||++...+|+-+..|+.++..+.+.++--|+|+||.|+.+.++++.+.+++|++.....|+++||++..|++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999988888899999999999989999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHhhh
Q 027417 169 QTVVTEIYNILSRKVMISQELK 190 (223)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~~~~ 190 (223)
..++-++...+.++-.+.....
T Consensus 162 ~~~a~rli~~ar~~d~v~~~~a 183 (213)
T KOG0095|consen 162 LDLACRLISEARQNDLVNNVSA 183 (213)
T ss_pred HHHHHHHHHHHHhccchhhccc
Confidence 9999999888877765444333
No 16
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.9e-35 Score=220.73 Aligned_cols=164 Identities=46% Similarity=0.765 Sum_probs=149.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887778888888887778888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+|+.+..|+..+........|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987665568999999999998777788888899998889999999999999999999999988
Q ss_pred HHHH
Q 027417 175 IYNI 178 (223)
Q Consensus 175 ~~~~ 178 (223)
+.++
T Consensus 161 ~~~~ 164 (188)
T cd04125 161 IIKR 164 (188)
T ss_pred HHHH
Confidence 7543
No 17
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=6.7e-35 Score=221.80 Aligned_cols=196 Identities=40% Similarity=0.697 Sum_probs=163.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
++.++|+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.|||+||++.+..++..+++++|++|
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999998887778888888887777778888889999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++++|+.+..|+..+..... ..|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999999999876543 68999999999998767778888999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCC
Q 027417 172 VTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221 (223)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 221 (223)
...++.....+.. ..+.....-....+++.+++..||
T Consensus 163 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 163 TELVLRAKKDNLA-------------KQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHhhhccCc-------------ccccCCccccCccchhccccccCC
Confidence 9988654333211 111112222334455667778888
No 18
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.8e-35 Score=216.05 Aligned_cols=164 Identities=49% Similarity=0.869 Sum_probs=150.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999988888888888888777788888889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|..+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987766567899999999999887788889999999999999999999999999999999998
Q ss_pred HHHH
Q 027417 174 EIYN 177 (223)
Q Consensus 174 ~~~~ 177 (223)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 19
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=8.2e-35 Score=223.22 Aligned_cols=187 Identities=31% Similarity=0.519 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+|+|.+|||||||+++|..+.+.. +.++.+.++....+ ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988864 56776766544433 4578999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHcC-----
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-------------------AREVTTAEGKALAEAQG----- 150 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 150 (223)
|++++.+|+.+..|+..+......+.|+|+|+||+|+.+ .+.+..+++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888877665555799999999999875 57788999999999876
Q ss_pred ---------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCC
Q 027417 151 ---------LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221 (223)
Q Consensus 151 ---------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 221 (223)
++|++|||++|.||+++|..+++.++....+.......+ -..+.+.+-+.+|.+||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT---------------QGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh---------------hccccCCCcccCCCCCC
Confidence 689999999999999999999998876655554422211 12233444566788898
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=6.4e-35 Score=218.39 Aligned_cols=164 Identities=32% Similarity=0.552 Sum_probs=146.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.+..+||+++|++|||||||++++..+.+...+.||.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 35678999999999999999999999999888888887655 45677888999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEE
Q 027417 91 LLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMET 156 (223)
Q Consensus 91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 156 (223)
|+|||++++.||+.+ ..|+..+..... ..|++|||||+|+.+ .+.++.+++..+++..++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 899999987654 699999999999864 246899999999999996 89999
Q ss_pred ccCCCCC-HHHHHHHHHHHHH
Q 027417 157 SALDSSN-VTAAFQTVVTEIY 176 (223)
Q Consensus 157 Sa~~~~~-i~~~~~~l~~~~~ 176 (223)
||++|.| |+++|+.+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999987543
No 21
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.4e-34 Score=214.27 Aligned_cols=166 Identities=51% Similarity=0.903 Sum_probs=152.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
++.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+++||++|++.+...+..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35699999999999999999999999998888888888887777888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987666679999999999998777778888899999999999999999999999999999
Q ss_pred HHHHHH
Q 027417 172 VTEIYN 177 (223)
Q Consensus 172 ~~~~~~ 177 (223)
++++..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 988754
No 22
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1e-34 Score=223.29 Aligned_cols=164 Identities=33% Similarity=0.583 Sum_probs=148.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
+||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999998888889989888887777754 578999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHSD---MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
||++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999876542 35689999999999877788889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027417 171 VVTEIYNI 178 (223)
Q Consensus 171 l~~~~~~~ 178 (223)
|+..+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99888764
No 23
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=219.08 Aligned_cols=171 Identities=49% Similarity=0.854 Sum_probs=155.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
++.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999998888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+|+.+..|+..+........|+++|+||+|+.+.+.++.+++..+++.++++++++||+++.|++++|+++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988876655679999999999998777788899999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 027417 172 VTEIYNILSRK 182 (223)
Q Consensus 172 ~~~~~~~~~~~ 182 (223)
++.+++.....
T Consensus 164 ~~~~~~~~~~~ 174 (210)
T PLN03108 164 AAKIYKKIQDG 174 (210)
T ss_pred HHHHHHHhhhc
Confidence 99988765433
No 24
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.2e-34 Score=219.73 Aligned_cols=170 Identities=45% Similarity=0.789 Sum_probs=152.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888888888888887777766 4667899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+|+.+..|+..+.... ....|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999987653 3357789999999998777888899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 027417 172 VTEIYNILSRKV 183 (223)
Q Consensus 172 ~~~~~~~~~~~~ 183 (223)
++.+++.+....
T Consensus 162 ~~~~~~~~~~~~ 173 (211)
T cd04111 162 TQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHhhcCC
Confidence 999888865554
No 25
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=218.33 Aligned_cols=164 Identities=37% Similarity=0.560 Sum_probs=145.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..+||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999888777778766555 5566788888999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|+.++|++|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999999886653 3478999999999997767778888888988889999999999999999999999
Q ss_pred HHHHHH
Q 027417 172 VTEIYN 177 (223)
Q Consensus 172 ~~~~~~ 177 (223)
++.+.+
T Consensus 163 ~~~l~~ 168 (189)
T PTZ00369 163 VREIRK 168 (189)
T ss_pred HHHHHH
Confidence 987754
No 26
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.1e-34 Score=215.99 Aligned_cols=159 Identities=32% Similarity=0.602 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888889987665 445677888999999999999999999999999999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCc----------ccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417 95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAR----------EVTTAEGKALAEAQGL-FFMETSALDSS 162 (223)
Q Consensus 95 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (223)
|++++.||+.+ ..|+..+..... +.|++|||||+|+.+.+ .++.+++..+++..++ +|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689999976654 79999999999996532 4789999999999998 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEI 175 (223)
Q Consensus 163 ~i~~~~~~l~~~~ 175 (223)
||+++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999765
No 27
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.1e-34 Score=216.83 Aligned_cols=162 Identities=48% Similarity=0.795 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
+||+|+|++|||||||++++.++.+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 5667777777776778888889999999999999998899999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++|+++||++|.|++++|++|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998776667999999999999766777888889999999999999999999999999999998
Q ss_pred HHH
Q 027417 174 EIY 176 (223)
Q Consensus 174 ~~~ 176 (223)
.+.
T Consensus 161 ~~~ 163 (191)
T cd04112 161 ELK 163 (191)
T ss_pred HHH
Confidence 774
No 28
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.8e-34 Score=220.21 Aligned_cols=171 Identities=27% Similarity=0.458 Sum_probs=150.8
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+....+||+++|++|||||+|+.++..+.+...+.+|.+..+. ..+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 4456789999999999999999999999998888899876654 457788999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEE
Q 027417 90 ALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFME 155 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 155 (223)
+|+|||++++.||+.+ ..|+..+..... +.|+|+||||+|+.+ .+.++.++++.+++.+++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999985 899999987654 689999999999864 256889999999999999 6999
Q ss_pred EccCCCC-CHHHHHHHHHHHHHHHHhhh
Q 027417 156 TSALDSS-NVTAAFQTVVTEIYNILSRK 182 (223)
Q Consensus 156 ~Sa~~~~-~i~~~~~~l~~~~~~~~~~~ 182 (223)
|||++|. ||+++|..++..+++....+
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~~~~ 194 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKLSPP 194 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhcccc
Confidence 9999997 89999999998887654443
No 29
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.6e-34 Score=211.57 Aligned_cols=160 Identities=43% Similarity=0.772 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
++|+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888887778888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||++|.|++++|++|+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999877665579999999999998878888999999999999999999999999999999999864
No 30
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3e-35 Score=206.29 Aligned_cols=172 Identities=44% Similarity=0.788 Sum_probs=158.2
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
...+.++++++|++-+|||+|++.++.+.+..-.+||.|+++....+.+ ++..+++++|||+|+++++++...+++++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 3457899999999999999999999999999999999999998877766 678899999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCC-CC-CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSD-MN-VVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~-~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
++++|||++|++||+.+..|+.+...+.. .. +-+.+||+|+|+...++++.+|++++++.++..|+++||++|.|+++
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 99999999999999999999999876654 33 34457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027417 167 AFQTVVTEIYNILSR 181 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~ 181 (223)
.|..|.+.++..+.+
T Consensus 164 AF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 164 AFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988877
No 31
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=207.39 Aligned_cols=210 Identities=36% Similarity=0.628 Sum_probs=179.1
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
.+...+||+++|..=+|||||+-+++...|......|+-..+..+.+.+.+....+.||||+|+++|-.+-.-+++.+|+
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 45667999999999999999999999998877766776777777888888899999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+++|||+++++||+.+..|..+++.-....+-+++|+||+|+.+++.++.+++..+++..|+.|+++||+++.||.++|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 99999999999999999999999887777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCCC
Q 027417 170 TVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223 (223)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~ 223 (223)
.|..++++...++....-++ +..+....-.+.......+..+..++||.+
T Consensus 169 ~Lt~~MiE~~s~~qr~~~~~----s~qpp~t~r~~~~iD~e~~a~~sg~~CC~~ 218 (218)
T KOG0088|consen 169 SLTAKMIEHSSQRQRTRSPL----STQPPSTNRSIRLIDNEAEAERSGKRCCRI 218 (218)
T ss_pred HHHHHHHHHhhhcccccCCc----CCCCCCcccchhccCCCcccccccCCccCC
Confidence 99999988877665533322 333333333444444444567777789975
No 32
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3.2e-34 Score=216.60 Aligned_cols=162 Identities=34% Similarity=0.545 Sum_probs=142.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
||+|+|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777777766444 3455678888899999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 96 ISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999998886543 24689999999999987777888888889998999999999999999999999999
Q ss_pred HHHHHH
Q 027417 173 TEIYNI 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
+.+.++
T Consensus 160 ~~l~~~ 165 (190)
T cd04144 160 RALRQQ 165 (190)
T ss_pred HHHHHh
Confidence 876433
No 33
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.8e-34 Score=210.69 Aligned_cols=161 Identities=37% Similarity=0.721 Sum_probs=153.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
||+++|++|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998899998899999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 96 ISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++++.||+.+..|+..+........|+++|+||.|+.+.+.++.++++.+++.++++|+++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988776799999999999998789999999999999999999999999999999999999887
Q ss_pred H
Q 027417 176 Y 176 (223)
Q Consensus 176 ~ 176 (223)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 34
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.1e-34 Score=212.62 Aligned_cols=165 Identities=32% Similarity=0.477 Sum_probs=146.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|.+.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999988877788876444 44567788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+.++++.++++.+++..+++|++|||++|.||+++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999998887654 335799999999999987778899999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027417 173 TEIYNIL 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
+.+.+..
T Consensus 161 ~~~~~~~ 167 (172)
T cd04141 161 REIRRKE 167 (172)
T ss_pred HHHHHhc
Confidence 8876543
No 35
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=200.91 Aligned_cols=177 Identities=48% Similarity=0.779 Sum_probs=167.0
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
|.+.+++.+|++++|+.|+|||+|++++...++......|+|+++..+.+.+.+..+++++|||+|++++++....+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
+.+.++|||++++++|+.+..|+..++......+-+|+++||.|+..+++++..++..|+.+..+.+.++||++|+|+++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999888877888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027417 167 AFQTVVTEIYNILSRKV 183 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~~~ 183 (223)
.|-...+.++..+..-+
T Consensus 162 aFl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 162 AFLKCARTILNKIESGE 178 (214)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99998888877665433
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=9.7e-34 Score=209.32 Aligned_cols=162 Identities=44% Similarity=0.772 Sum_probs=147.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777777777888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+........|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++++..
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999977665578999999999998777777888888999999999999999999999999999876
Q ss_pred HH
Q 027417 175 IY 176 (223)
Q Consensus 175 ~~ 176 (223)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 53
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=6.7e-34 Score=212.95 Aligned_cols=167 Identities=39% Similarity=0.750 Sum_probs=149.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC----------CEEEEEEEEeCCCchhhhchhH
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN----------GKEVKAQIWDTAGQERFRAVTS 81 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~G~~~~~~~~~ 81 (223)
++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+. +..+.+.+||++|++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999888888888877766655553 4568899999999999999999
Q ss_pred hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
.+++++|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999986653 34689999999999987778888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~~ 178 (223)
|.|++++|++|++.++++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999888654
No 38
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.3e-34 Score=213.43 Aligned_cols=160 Identities=30% Similarity=0.551 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6999999999999999999999999888888877655 356778889999999999999999999999999999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417 95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++.||+.+ ..|+..+..... ..|+++||||+|+.+ .+.++.+++.++++..++ +|++|||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 799999987654 799999999999864 245889999999999997 799999999
Q ss_pred CCC-HHHHHHHHHHHHH
Q 027417 161 SSN-VTAAFQTVVTEIY 176 (223)
Q Consensus 161 ~~~-i~~~~~~l~~~~~ 176 (223)
|.+ |+++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999987543
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.2e-33 Score=208.86 Aligned_cols=163 Identities=50% Similarity=0.850 Sum_probs=149.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999888877788888888777888888889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+.|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999997766557999999999999877778889999999999999999999999999999999998
Q ss_pred HHH
Q 027417 174 EIY 176 (223)
Q Consensus 174 ~~~ 176 (223)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 764
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.2e-33 Score=208.83 Aligned_cols=162 Identities=34% Similarity=0.672 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888899888888888888889999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCC-----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSD-----MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+......++.+.++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999876643 4699999999999976567788888888888899999999999999999999
Q ss_pred HHHHHHH
Q 027417 170 TVVTEIY 176 (223)
Q Consensus 170 ~l~~~~~ 176 (223)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 41
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.4e-33 Score=213.13 Aligned_cols=160 Identities=29% Similarity=0.547 Sum_probs=141.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+++|+.|||||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888877554 34456788899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEEccC
Q 027417 94 YDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LFFMETSAL 159 (223)
Q Consensus 94 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 159 (223)
||++++.||+.+. .|+..+..... +.|+++||||.|+.+. +.+..++++.+++..+ ++|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 69888866543 7999999999999653 2367788999999998 589999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027417 160 DSSNVTAAFQTVVTEI 175 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~ 175 (223)
+|.|++++|++|++.+
T Consensus 161 ~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 161 NQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998766
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=3.9e-33 Score=206.69 Aligned_cols=166 Identities=54% Similarity=0.914 Sum_probs=151.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
.+.+||+|+|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..+...+++.+|++|
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+++.+..|+..+......+.|+++|+||.|+.+.+.+..++++.++...+++++++||+++.|++++|+++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999977665679999999999998767788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 027417 172 VTEIYN 177 (223)
Q Consensus 172 ~~~~~~ 177 (223)
++.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 987753
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.8e-33 Score=206.72 Aligned_cols=163 Identities=67% Similarity=1.075 Sum_probs=149.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
+.+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999998888888888888888888888888899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999877665799999999999987777888888999988899999999999999999999998
Q ss_pred HHH
Q 027417 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.1e-33 Score=210.47 Aligned_cols=162 Identities=30% Similarity=0.541 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|+.|||||||++++.++.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999998888888888988999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-----CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-----AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
|++++.+|+.+..|+..+........| |+|+||+|+.. ......++++.+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998776554566 68899999852 112234677888889999999999999999999999
Q ss_pred HHHHHHHH
Q 027417 170 TVVTEIYN 177 (223)
Q Consensus 170 ~l~~~~~~ 177 (223)
++++.+++
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99987764
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.2e-33 Score=205.37 Aligned_cols=162 Identities=49% Similarity=0.842 Sum_probs=146.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
+.+||+|+|++|||||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56999999999999999999999988887777887777777778888888899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..+++..+++..+. .++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999776666799999999999987777888888999998886 58999999999999999999
Q ss_pred HHH
Q 027417 172 VTE 174 (223)
Q Consensus 172 ~~~ 174 (223)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 864
No 46
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=5.2e-33 Score=213.42 Aligned_cols=163 Identities=28% Similarity=0.498 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+|+|++|||||||+.+|..+.+...+.||.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998888898876654 56678889999999999999999999999999999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417 95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++++|+.+ ..|...+.... .+.|+||||||+|+.+. ..++.+++..+++..++ +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999999 56887776554 47999999999998642 13778899999999996 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHH
Q 027417 161 SSN-VTAAFQTVVTEIYNIL 179 (223)
Q Consensus 161 ~~~-i~~~~~~l~~~~~~~~ 179 (223)
+.+ |+++|+.++...+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 985 9999999988765433
No 47
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.2e-33 Score=208.39 Aligned_cols=160 Identities=26% Similarity=0.474 Sum_probs=140.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+|+|++|||||||+.++.++.+...+.|+.+..+. ..+.+.+..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999988888888776553 3556788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEEccC
Q 027417 94 YDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LFFMETSAL 159 (223)
Q Consensus 94 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 159 (223)
||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+. +.+..++++.+++..+ +.|++|||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 59888876543 6999999999998643 4677888999998887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027417 160 DSSNVTAAFQTVVTEI 175 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~ 175 (223)
+|.|++++|+.++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 48
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1e-32 Score=202.94 Aligned_cols=160 Identities=53% Similarity=0.872 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888887778888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998876666689999999999998777788999999999999999999999999999999999864
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=7.9e-33 Score=203.71 Aligned_cols=160 Identities=36% Similarity=0.575 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777765 444566777888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|+.++|++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887653 347999999999999776677778888888888899999999999999999999986
Q ss_pred HH
Q 027417 174 EI 175 (223)
Q Consensus 174 ~~ 175 (223)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 50
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=2.9e-32 Score=206.38 Aligned_cols=164 Identities=33% Similarity=0.588 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
+||+|+|++|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+||++|.+++..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 5677878777777888899999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA----REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
||++++.+++.+..|+..+..... +.|+++|+||+|+.+. +.+..+++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876533 6899999999998642 34566778888888899999999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 170 TVVTEIYNIL 179 (223)
Q Consensus 170 ~l~~~~~~~~ 179 (223)
+|++.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9998886543
No 51
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.6e-32 Score=206.83 Aligned_cols=163 Identities=29% Similarity=0.502 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
+||+|+|++|||||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998887777776665543 34454 6788999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 027417 94 YDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA----REVTTAEGKALAEAQGL-FFMETSALDSSNVTAA 167 (223)
Q Consensus 94 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 167 (223)
||++++.+|+.+. .|+..+.... .+.|+++|+||.|+... +.+..+++..++...++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999995 5888876543 37899999999998653 35678889999999998 8999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 168 FQTVVTEIYNIL 179 (223)
Q Consensus 168 ~~~l~~~~~~~~ 179 (223)
|+.+++.+....
T Consensus 159 f~~l~~~~~~~~ 170 (187)
T cd04132 159 FDTAIEEALKKE 170 (187)
T ss_pred HHHHHHHHHhhh
Confidence 999998886443
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=9.3e-33 Score=212.71 Aligned_cols=164 Identities=29% Similarity=0.511 Sum_probs=146.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 66799999999999999999999999988888999998888877777888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+|+.+..|+..+..... +.|+++||||+|+.. +.+..++. .++...+++|+++||++|.|++++|++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 99999999999999999999986653 799999999999864 34445555 6777788999999999999999999999
Q ss_pred HHHHHHH
Q 027417 172 VTEIYNI 178 (223)
Q Consensus 172 ~~~~~~~ 178 (223)
+..+++.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9888654
No 53
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-33 Score=190.88 Aligned_cols=174 Identities=47% Similarity=0.831 Sum_probs=164.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
+.+.+|-+|+|+-|+|||+|++.+....+....+.++|+++....+.+.+..+.+++|||+|+++++.....+++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
++|||++.+.+++.+..|+...+...+.+..+++++||.|+...+++..++++.|+++.+..|+++||++|.++++.|-.
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence 99999999999999999999998888878889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q 027417 171 VVTEIYNILSRKVM 184 (223)
Q Consensus 171 l~~~~~~~~~~~~~ 184 (223)
.+.+++..+..-..
T Consensus 168 ~akkiyqniqdgsl 181 (215)
T KOG0097|consen 168 TAKKIYQNIQDGSL 181 (215)
T ss_pred HHHHHHHhhhcCcc
Confidence 99999888765543
No 54
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.9e-32 Score=201.52 Aligned_cols=158 Identities=37% Similarity=0.658 Sum_probs=143.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC--CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN--GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+. +..+.+++|||||++.+..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988888888888888766666666 778899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|||++++++++.+..|+..+..... +.|+++|+||+|+.....+..+++..+++..+++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999876543 799999999999987777888899999999999999999999999999999987
Q ss_pred H
Q 027417 173 T 173 (223)
Q Consensus 173 ~ 173 (223)
.
T Consensus 160 ~ 160 (162)
T cd04106 160 E 160 (162)
T ss_pred H
Confidence 5
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.1e-32 Score=202.18 Aligned_cols=162 Identities=35% Similarity=0.643 Sum_probs=144.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988889998888887888888888999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
++++.+++.+..|+..+... .....|+++|+||+|+.+.+. ...+++..+++..+.+++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999987554 344578999999999865433 345667788888899999999999999999999999
Q ss_pred HHHHH
Q 027417 173 TEIYN 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 87754
No 56
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.7e-32 Score=200.97 Aligned_cols=163 Identities=58% Similarity=0.953 Sum_probs=148.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788888877778888888889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+..+...+.|+++|+||+|+...+++..+.+..++...+++++++|++++.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999877765589999999999988766778888999999999999999999999999999999988
Q ss_pred HHH
Q 027417 175 IYN 177 (223)
Q Consensus 175 ~~~ 177 (223)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.1e-32 Score=202.39 Aligned_cols=160 Identities=31% Similarity=0.593 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887788888888887777777888899999999999999988999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+..... +.|+++|+||+|+.+ +... .+...+++..+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987765 799999999999874 3333 34456777778899999999999999999999987
Q ss_pred HHH
Q 027417 175 IYN 177 (223)
Q Consensus 175 ~~~ 177 (223)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 753
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.8e-32 Score=202.24 Aligned_cols=161 Identities=34% Similarity=0.560 Sum_probs=142.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
++||+++|.+|||||||++++..+.+...+.++++..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998888777777766544 45667788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+|+.+..|+..+... ...+.|+++|+||+|+.....+..+++..+++..+++++++||++|.|++++|.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999988654 345799999999999987667777888888888999999999999999999999998
Q ss_pred HHH
Q 027417 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 755
No 59
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1e-31 Score=206.15 Aligned_cols=170 Identities=44% Similarity=0.769 Sum_probs=146.8
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
....+..+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 44556789999999999999999999998776 45667778777777777888888999999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHH-HHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417 88 VGALLVYDISRRQTFDSIGR-WLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
|++|+|||++++.+|+.+.. |...+.... ..+.|+++|+||+|+...+.+..++...++...+++|+++||+++.|++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999965 766665432 3468999999999998767778888888999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYNI 178 (223)
Q Consensus 166 ~~~~~l~~~~~~~ 178 (223)
++|++|+..+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888543
No 60
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=5.3e-32 Score=200.84 Aligned_cols=163 Identities=39% Similarity=0.688 Sum_probs=145.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.+..+||+++|++|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999988887788888887777888889999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVT 165 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 165 (223)
|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+.+..++++++++.++. +++++||++|.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999998876543 2468999999999987 356778889999988884 79999999999999
Q ss_pred HHHHHHHHH
Q 027417 166 AAFQTVVTE 174 (223)
Q Consensus 166 ~~~~~l~~~ 174 (223)
++|+.+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999864
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.5e-32 Score=200.48 Aligned_cols=161 Identities=36% Similarity=0.569 Sum_probs=141.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+++|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988877777754 45556777788888999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.....+..+++..++...+++++++||+++.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998886653 35799999999999976666777778888888889999999999999999999998
Q ss_pred HHH
Q 027417 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 653
No 62
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=5.6e-32 Score=199.13 Aligned_cols=160 Identities=35% Similarity=0.609 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||++++.++.+.+.+.++.+.+.......+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777777777776667777888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+..... +.|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999876543 6899999999998532 2345566777788999999999999999999999988
Q ss_pred HHHH
Q 027417 175 IYNI 178 (223)
Q Consensus 175 ~~~~ 178 (223)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 7664
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.2e-32 Score=202.16 Aligned_cols=158 Identities=30% Similarity=0.522 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+|+|++|||||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999998888888888653 33445667888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++++|+.+. .|+..+..... +.|+++|+||+|+.+. +.+..+++..+++..+. ++++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999995 69888766543 7999999999998642 35788999999999985 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTE 174 (223)
Q Consensus 161 ~~~i~~~~~~l~~~ 174 (223)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998753
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.8e-32 Score=203.68 Aligned_cols=160 Identities=31% Similarity=0.518 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
.||+|+|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 48999999999999999999999888777788665543 45566788899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcC-CeEEEEccCC
Q 027417 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQG-LFFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 160 (223)
|++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.+ .+..+++..++...+ ++|++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 69988876543 79999999999987543 356677888888877 6899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEIY 176 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~ 176 (223)
|.|++++|++|++.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998774
No 65
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-34 Score=199.93 Aligned_cols=175 Identities=38% Similarity=0.688 Sum_probs=159.3
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC---------CEEEEEEEEeCCCchhhhch
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN---------GKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~G~~~~~~~ 79 (223)
.++++.||.+.+|++|+|||||+.+++.+.+......|.|+++..+.+.++ +..+.+++|||+|+++++++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 356788999999999999999999999999999889999999888777652 35678899999999999999
Q ss_pred hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..++++.+=+++++||+++..||-+++.|+..+..+. ..++-+|+++||+|+.+.+.++.+++..++.++++|||++||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 9999999999999999999999999999999997663 346778899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhh
Q 027417 159 LDSSNVTAAFQTVVTEIYNILSRKV 183 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~~~~~~~~~~ 183 (223)
-+|.|+++..+.|+..+++++.+-.
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887654
No 66
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.1e-31 Score=199.32 Aligned_cols=162 Identities=41% Similarity=0.740 Sum_probs=145.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-chhHhhhcCCCEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGALL 92 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~~i~ 92 (223)
.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999988887788888888877888888888999999999998876 578888999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC---CCCHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD---SSNVTAAF 168 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~ 168 (223)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..+++..+++..+++|+++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887653 35799999999999988788888899999999999999999999 89999999
Q ss_pred HHHHHHH
Q 027417 169 QTVVTEI 175 (223)
Q Consensus 169 ~~l~~~~ 175 (223)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998755
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=8e-32 Score=198.66 Aligned_cols=161 Identities=40% Similarity=0.610 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+|+|++|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888777777655 334456667888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++++++.+..|+..+... ...+.|+++|+||+|+...+.+..+++..+++..+++++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 999999999999998887654 3346899999999999876677788888899989999999999999999999999987
Q ss_pred HHH
Q 027417 174 EIY 176 (223)
Q Consensus 174 ~~~ 176 (223)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 653
No 68
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.3e-31 Score=196.84 Aligned_cols=160 Identities=40% Similarity=0.753 Sum_probs=145.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||++++++..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+|+.+..|+..+......+.|+++++||+|+.+.+....++...+++..+++++++||+++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999876655579999999999997666778888888988889999999999999999999999864
No 69
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=9.3e-32 Score=198.69 Aligned_cols=158 Identities=30% Similarity=0.433 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988777777755443 445556778889999999999999988888999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999988776542 2479999999999998767778888888888889999999999999999999998
Q ss_pred HH
Q 027417 172 VT 173 (223)
Q Consensus 172 ~~ 173 (223)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 74
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.5e-31 Score=196.49 Aligned_cols=160 Identities=34% Similarity=0.567 Sum_probs=139.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999888777777766443 45566788888899999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +....+++..+++..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 34789999999999876 45667888888888899999999999999999999998
Q ss_pred HHH
Q 027417 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 653
No 71
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=2.4e-31 Score=195.84 Aligned_cols=162 Identities=45% Similarity=0.818 Sum_probs=147.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+++|++|||||||+++|.++.+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999988777778878777778888888899999999999999988999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
+|++++++++.+..|+..+........|+++++||+|+...+....++...++...+++++++||++|.|+.++|++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776567999999999998866677888888899998999999999999999999999987
Q ss_pred HH
Q 027417 174 EI 175 (223)
Q Consensus 174 ~~ 175 (223)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 64
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1e-31 Score=203.82 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhHhhhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYRG 86 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~ 86 (223)
+||+|+|.+|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998888888877666666677788889999999999654321 12345689
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSS 162 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 162 (223)
+|++|+|||+++++||+.+..|+..+.... ..++|+++|+||+|+...+.+..++...++. ..+++|++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998886653 4579999999999997766666777777654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 027417 163 NVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~~~ 180 (223)
|++++|+.++..++.+-.
T Consensus 161 ~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 161 HILLLFKELLISATTRGR 178 (198)
T ss_pred CHHHHHHHHHHHhhccCC
Confidence 999999999987764433
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.1e-31 Score=196.26 Aligned_cols=161 Identities=35% Similarity=0.556 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+++|++|+|||||++++.++.+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988776667775533 344556788888999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+++.+..|+..+... ...+.|+++|+||+|+.....+..+++..+++..+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999888654 334789999999999987666777888889988899999999999999999999998
Q ss_pred HHH
Q 027417 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 654
No 74
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2e-31 Score=202.02 Aligned_cols=156 Identities=28% Similarity=0.528 Sum_probs=139.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH
Q 027417 20 IGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR 99 (223)
Q Consensus 20 ~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 99 (223)
+|++|||||||+++++.+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888878889989888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417 100 QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 100 ~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
.+|+.+..|+..+..... +.|+++|+||+|+.. +.+..++ ..++...++.|++|||++|.||.++|++|+..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999987653 799999999999864 3444444 467788899999999999999999999999888654
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=4.7e-31 Score=194.54 Aligned_cols=160 Identities=34% Similarity=0.591 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD--EFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+||+++|++|||||||++++.+. .+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5667778888888776666664 56789999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+....++...+++.+....+++++++||+++.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999987664 468999999999997766777777777888888999999999999999999999
Q ss_pred HHHH
Q 027417 172 VTEI 175 (223)
Q Consensus 172 ~~~~ 175 (223)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 76
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2e-31 Score=201.49 Aligned_cols=158 Identities=26% Similarity=0.414 Sum_probs=129.6
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCcccee-EeEEEE--------EEECCEEEEEEEEeCCCchhhhc
Q 027417 14 LFKVVLIGDSAVGKSNLLA-RFARDE-----FYPNSKSTIGV-EFQTQK--------MDINGKEVKAQIWDTAGQERFRA 78 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~G~~~~~~ 78 (223)
.+||+++|++|||||||+. ++.++. +...+.||.+. +.+... ..+++..+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 565443 34556677652 222222 246788999999999998753
Q ss_pred hhHhhhcCCCEEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------CcccC
Q 027417 79 VTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD-------------------AREVT 138 (223)
Q Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~ 138 (223)
....+++++|++|+|||++++.||+.+. .|+..+..... +.|+++|+||+|+.+ .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999996 69998876653 689999999999864 36788
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 139 TAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
.++++.+++.++++|++|||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
No 77
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.2e-30 Score=191.73 Aligned_cols=161 Identities=37% Similarity=0.684 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|+|||||+++++++.+...+.++.+.......+.+.+..+.+.+||++|++.+..++..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887766666666666666777778889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+......+.|+++++||+|+.....+..++...+++..+++++++|++++.|+++++++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999877765579999999999998767777888888888889999999999999999999999876
Q ss_pred H
Q 027417 175 I 175 (223)
Q Consensus 175 ~ 175 (223)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=4.3e-31 Score=196.67 Aligned_cols=158 Identities=30% Similarity=0.560 Sum_probs=137.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEEC
Q 027417 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI 96 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 96 (223)
|+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999988777777755443 44566788889999999999999999999999999999999999
Q ss_pred CCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417 97 SRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALDSS 162 (223)
Q Consensus 97 ~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (223)
+++.+|+.+. .|+..+..... +.|+++|+||+|+... +.+..+++..+++..+. ++++|||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999995 69998876544 7999999999998652 23778888999999987 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEIY 176 (223)
Q Consensus 163 ~i~~~~~~l~~~~~ 176 (223)
|++++|+.+++.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.4e-30 Score=193.35 Aligned_cols=164 Identities=37% Similarity=0.699 Sum_probs=144.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998887777778787777777888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~ 169 (223)
|++++.+++.+..|...+.... ..+.|+++|+||+|+...+....++...++...+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 9999999999988988764432 2369999999999998656677788888888887 7899999999999999999
Q ss_pred HHHHHHHHH
Q 027417 170 TVVTEIYNI 178 (223)
Q Consensus 170 ~l~~~~~~~ 178 (223)
+|++.+++.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999888765
No 80
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.6e-30 Score=191.50 Aligned_cols=165 Identities=44% Similarity=0.805 Sum_probs=146.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
....++|+++|++|||||||++++.++.+...+.++.+.+.....+.+.+..+.+.+||++|+..+...+..++..+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998887777777777777777788888888999999999999998889999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..+..+.+.+....+++++||++|.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999999887766667999999999999877777777778888888889999999999999999999
Q ss_pred HHHHH
Q 027417 171 VVTEI 175 (223)
Q Consensus 171 l~~~~ 175 (223)
|...+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98754
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=8.7e-31 Score=204.60 Aligned_cols=160 Identities=25% Similarity=0.441 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+|+|++|||||||+++++++.+...+.+|++ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988877777765 555667778888999999999999999888888899999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc---------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 027417 95 DISRRQTFDSIGRWLNELHTH---------SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNV 164 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 164 (223)
|++++++|+.+..|+..+... ...+.|+|+|+||+|+.+.+++..+++..++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999888643 224689999999999987667788888777654 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 165 TAAFQTVVTEI 175 (223)
Q Consensus 165 ~~~~~~l~~~~ 175 (223)
+++|++|+..+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 82
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=8.2e-31 Score=192.16 Aligned_cols=153 Identities=20% Similarity=0.362 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||+.++..+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988776655544 3333 45677888889999999999864 34568899999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKD--AREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|++++.||+.+..|+..+..... .+.|+++|+||.|+.. .+++..++++.+++.. +++|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999876643 4689999999999853 4678888999998876 589999999999999999999
Q ss_pred HHHH
Q 027417 171 VVTE 174 (223)
Q Consensus 171 l~~~ 174 (223)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 83
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=2.6e-30 Score=189.98 Aligned_cols=159 Identities=52% Similarity=0.898 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788788777777778888899999999999999988999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++...++...+++++++||++|.|++++++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999887663 45799999999999974 456678888899999999999999999999999999886
Q ss_pred H
Q 027417 174 E 174 (223)
Q Consensus 174 ~ 174 (223)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=2.5e-30 Score=191.63 Aligned_cols=161 Identities=34% Similarity=0.585 Sum_probs=142.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
++|+++|++|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+..++..+++.++++|+||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999988877777776644 3566677888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|++++.+++.+..|...+... ...+.|+++++||.|+.+.+.+..+++..+++..+ ++++++||+++.|++++|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999888654 33479999999999998777778888888888887 7899999999999999999998
Q ss_pred HHHH
Q 027417 173 TEIY 176 (223)
Q Consensus 173 ~~~~ 176 (223)
..++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7664
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=1.7e-30 Score=193.44 Aligned_cols=157 Identities=31% Similarity=0.552 Sum_probs=136.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|+|||||++++.++.+...+.++ +.+.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 58999999999999999999988887777777 45555566778888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++..+++..+. .|+++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999984 6988887543 3689999999999863 356778889999999988 799999999
Q ss_pred CCCHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVT 173 (223)
Q Consensus 161 ~~~i~~~~~~l~~ 173 (223)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998863
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1e-30 Score=193.84 Aligned_cols=163 Identities=19% Similarity=0.242 Sum_probs=140.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
...+||+++|++|||||||+++++++.+. ..+.+|.+..+....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999887 77888888777767777888888999999999999988899999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~ 169 (223)
|+|||++++.+++.+..|+..+... .+.|+++|+||+|+.+.......+..++++.+++. ++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999999998876432 26999999999999755544445567778888874 79999999999999999
Q ss_pred HHHHHHH
Q 027417 170 TVVTEIY 176 (223)
Q Consensus 170 ~l~~~~~ 176 (223)
.|++.++
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9988764
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=9.3e-31 Score=193.30 Aligned_cols=159 Identities=35% Similarity=0.551 Sum_probs=135.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhchhHhhhcCCCEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 94 (223)
||+|+|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998877666666654333 45566788888999999999875 3445677889999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC-CCHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS-SNVTAAFQTV 171 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l 171 (223)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||+++ .|++++|+.|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887653 347999999999999776778888899999999999999999999 5999999999
Q ss_pred HHHH
Q 027417 172 VTEI 175 (223)
Q Consensus 172 ~~~~ 175 (223)
++.+
T Consensus 160 ~~~~ 163 (165)
T cd04146 160 CREV 163 (165)
T ss_pred HHHH
Confidence 8765
No 88
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=2.1e-30 Score=192.89 Aligned_cols=159 Identities=30% Similarity=0.514 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|+|||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999888777777654 333445667888889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+. +.++.+++..+++..++ ++++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999985 688888665 457999999999998643 35777888999999986 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEI 175 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~ 175 (223)
|.|++++|+.++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=2.7e-30 Score=199.27 Aligned_cols=165 Identities=27% Similarity=0.363 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc-CCCEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR-GAVGALL 92 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~~i~ 92 (223)
+||+++|++|||||||++++..+.+. ..+.++.+.+.....+.+++..+.+.+||++|++. .....++. .+|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888776 55666655466677778888889999999999872 23445666 8999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999886653 3479999999999998777788888888998889999999999999999999999
Q ss_pred HHHHHHHHhh
Q 027417 172 VTEIYNILSR 181 (223)
Q Consensus 172 ~~~~~~~~~~ 181 (223)
+..+......
T Consensus 159 ~~~~~~~~~~ 168 (221)
T cd04148 159 VRQIRLRRDS 168 (221)
T ss_pred HHHHHhhhcc
Confidence 9877644443
No 90
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=5.5e-30 Score=187.04 Aligned_cols=158 Identities=54% Similarity=0.926 Sum_probs=144.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|++++.+++.+..|+..+........|+++++||+|+........++...++...+.+++++|++++.|+.++|++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999998877656799999999999975567788899999998899999999999999999999986
No 91
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=3.4e-32 Score=184.96 Aligned_cols=160 Identities=48% Similarity=0.775 Sum_probs=147.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEEC
Q 027417 18 VLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI 96 (223)
Q Consensus 18 ~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 96 (223)
+++|++++|||+|+-++..+.+.. +...|.|+++..+.+..++..+.+++|||+|++++++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 478999999999988888776653 4557889999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 97 SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 97 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
.|..||++++.|+.++.++....+.+.+++||+|+..++.+..++.+.+++.+++||.++||++|.|++..|-.|++.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998878899999999999888889999999999999999999999999999999999987764
Q ss_pred H
Q 027417 177 N 177 (223)
Q Consensus 177 ~ 177 (223)
+
T Consensus 161 k 161 (192)
T KOG0083|consen 161 K 161 (192)
T ss_pred H
Confidence 3
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=3.4e-29 Score=184.32 Aligned_cols=161 Identities=37% Similarity=0.576 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||+++++...+...+.++.+.. .......++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999988877666665433 3455667888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+...+....++...++..++++++++||+++.|++++|+.+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887653 347999999999999765556777788888888999999999999999999999987
Q ss_pred HHH
Q 027417 174 EIY 176 (223)
Q Consensus 174 ~~~ 176 (223)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 663
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.4e-29 Score=183.54 Aligned_cols=158 Identities=37% Similarity=0.605 Sum_probs=139.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
||+|+|++|||||||++++++..+...+.++.+ +.....+...+..+.+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777755 5555666677778899999999999998999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 96 ISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
++++++++.+..|+..+..... ...|+++|+||+|+...+....+++..++...+++++++|++++.|++++|++|+..
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888876543 579999999999998767778889999999889999999999999999999999864
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=7.8e-29 Score=184.61 Aligned_cols=159 Identities=31% Similarity=0.549 Sum_probs=134.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
.||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+...+..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999888777777766444 345667888889999999999999888888889999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+.+. ..+...+++.++...+. ++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 6888876543 37899999999998642 23456778888888775 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEI 175 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~ 175 (223)
|.|++++|++|++.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 95
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.1e-28 Score=185.19 Aligned_cols=167 Identities=21% Similarity=0.349 Sum_probs=132.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
.++|+++|++|||||||++++..+.+.. ..++.+.+.....+.. ++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 5899999999999999999999877754 3566666665554444 3466889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH--H----cCCeEEEEccCCCCCHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE--A----QGLFFMETSALDSSNVT 165 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~i~ 165 (223)
|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ...++...+.. . .+++++++||+++.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 99999999999998888877554 2347999999999998642 33444444332 1 13468999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 027417 166 AAFQTVVTEIYNILSRKV 183 (223)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~ 183 (223)
++|++|++.+.+.++...
T Consensus 160 ~l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 160 EGLEKLYEMILKRRKMLR 177 (183)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999988866555443
No 96
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1e-28 Score=186.09 Aligned_cols=161 Identities=31% Similarity=0.532 Sum_probs=135.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
.||+|+|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+.......+..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998877766666654433 345566778888999999999888777777889999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD----------AREVTTAEGKALAEAQGL-FFMETSALDSS 162 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (223)
|+++.++|+.+. .|+..+..... ..|+++|+||+|+.. .+.+..+++..+++..++ +||+|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999996 69998876554 599999999999854 244567788889999985 79999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEIYN 177 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~ 177 (223)
|++++|+.+++.++.
T Consensus 160 ~v~~~f~~l~~~~~~ 174 (187)
T cd04129 160 GVDDVFEAATRAALL 174 (187)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999977643
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=2.5e-28 Score=182.80 Aligned_cols=162 Identities=35% Similarity=0.569 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
.||+|+|++|+|||||++++.+..+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887666666654333 445566777888999999999999989999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|+++..+++.+..|+..+.+. ...+.|+++|+||+|+...+.+..++...++...+++++++||+++.|+.++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999988887654 3456899999999999766666777778888888999999999999999999999988
Q ss_pred HHHH
Q 027417 174 EIYN 177 (223)
Q Consensus 174 ~~~~ 177 (223)
.+.+
T Consensus 161 ~~~~ 164 (180)
T cd04137 161 EIEK 164 (180)
T ss_pred HHHH
Confidence 7643
No 98
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-31 Score=188.12 Aligned_cols=192 Identities=28% Similarity=0.513 Sum_probs=176.5
Q ss_pred ccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhh
Q 027417 5 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYY 84 (223)
Q Consensus 5 ~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~ 84 (223)
...+.+.+..||++|+|..++||||+|++++-+-+...+..++|+++-...+.+.++.+.+.+||++|++++..+..+++
T Consensus 11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence 34556678899999999999999999999999999999999999999888888888889999999999999999999999
Q ss_pred cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417 85 RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
+++.+.++||+-++..||+....|++.+..... .+|.|+|-||+|+.+...+...+++.+++.+++.++-+|+++..|+
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 999999999999999999999999999987765 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCC
Q 027417 165 TAAFQTVVTEIYNILSRKVMISQELKQKDSSSF 197 (223)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
..+|..|++++..++.+.....+..++.++.++
T Consensus 170 ~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~~ 202 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQKKQSLNANERKQSSSSNST 202 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhccccCCCC
Confidence 999999999999999988876666666555444
No 99
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=6.6e-29 Score=186.93 Aligned_cols=163 Identities=38% Similarity=0.550 Sum_probs=150.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
...+|+++|.+|+|||+|..++.++.+...++||++ +.+...+.+++..+.+.|+||+|++.+..+...+++.+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 357999999999999999999999999999999977 6667778889999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
||+++++.||+.+..++..+.+. ....+|+++||||+|+...+.+..++++.++..++++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999999999998443 44568999999999999889999999999999999999999999999999999999
Q ss_pred HHHHH
Q 027417 172 VTEIY 176 (223)
Q Consensus 172 ~~~~~ 176 (223)
++.+-
T Consensus 161 ~r~~~ 165 (196)
T KOG0395|consen 161 VREIR 165 (196)
T ss_pred HHHHH
Confidence 87663
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=6.4e-29 Score=184.01 Aligned_cols=154 Identities=21% Similarity=0.395 Sum_probs=123.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..++|+++|++|||||||+++|..+.+. .+.+|.+.+... +.. ..+.+++|||+|++.+..++..+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999877664 456676665532 222 45789999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEEccCCCCCHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-----QGLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~ 166 (223)
|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+ .+..+++..+... ..++++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 99999999999998877766443 234689999999999874 3456666665421 234689999999999999
Q ss_pred HHHHHHH
Q 027417 167 AFQTVVT 173 (223)
Q Consensus 167 ~~~~l~~ 173 (223)
+|++|..
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.3e-28 Score=185.71 Aligned_cols=160 Identities=28% Similarity=0.464 Sum_probs=133.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
||+++|++|||||||+++++++.+...+.++.+ ......+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666643 4455567778888899999999999998888899999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 96 ISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKD-AREVTTAEGKALAE-AQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..++...... ..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988876543 4799999999999865 34555555554443 4567899999999999999999998
Q ss_pred HHHH
Q 027417 173 TEIY 176 (223)
Q Consensus 173 ~~~~ 176 (223)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 7663
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.6e-29 Score=186.62 Aligned_cols=153 Identities=20% Similarity=0.338 Sum_probs=126.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
.|+++|++|||||||++++.+..+...+.++.+... ..++...+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999998877777778877543 2334456889999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHcCCeEEEEccCC------CCCHH
Q 027417 96 ISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT----AEGKALAEAQGLFFMETSALD------SSNVT 165 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~ 165 (223)
.+++.+++.++.|+..+.... .++|+++|+||+|+...+.+.. .++..+++..++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999999988886543 4799999999999876543322 224455666788899998888 99999
Q ss_pred HHHHHHHH
Q 027417 166 AAFQTVVT 173 (223)
Q Consensus 166 ~~~~~l~~ 173 (223)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998863
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.6e-28 Score=183.95 Aligned_cols=159 Identities=21% Similarity=0.382 Sum_probs=123.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+..+||+++|.+|||||||++++..+.+. .+.+|.+.+... +.. ..+.+++||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 44689999999999999999999877664 456777765432 323 4578999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-----CeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-----LFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 165 (223)
+|||++++++++.+..|+..+... ...+.|++|++||+|+... ...++..+...... +.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999999988877776432 2246899999999998753 33334333221111 246689999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYN 177 (223)
Q Consensus 166 ~~~~~l~~~~~~ 177 (223)
++|++|++.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=3e-28 Score=180.60 Aligned_cols=157 Identities=32% Similarity=0.579 Sum_probs=132.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|++|||||||+++|+++.+...+.++.. +.........+..+.+++||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999888666666643 444555667788899999999999988888888889999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027417 95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAR-----------EVTTAEGKALAEAQGL-FFMETSALDS 161 (223)
Q Consensus 95 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (223)
|++++.++... ..|+..+..... +.|+++|+||+|+.+.. .+..+++..++...++ +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 99999999887 458877766544 79999999999987544 3457788888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVT 173 (223)
Q Consensus 162 ~~i~~~~~~l~~ 173 (223)
.|+.++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999874
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.7e-28 Score=182.01 Aligned_cols=155 Identities=22% Similarity=0.391 Sum_probs=125.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
||+++|.+|||||||++++.+..+. .+.+|.+.... .+.. ..+.+.+||+||+..+...+..+++.+|++|+|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999987654 45666665553 2323 45788999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHH
Q 027417 96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG------LFFMETSALDSSNVTAAF 168 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 168 (223)
++++.+++.+..|+..+... ...+.|+++|+||+|+.+ .+..++++.++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999999998887643 233589999999999864 356676666654322 258899999999999999
Q ss_pred HHHHHHHHH
Q 027417 169 QTVVTEIYN 177 (223)
Q Consensus 169 ~~l~~~~~~ 177 (223)
++|++.+.+
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999877654
No 106
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=5.4e-28 Score=183.18 Aligned_cols=147 Identities=21% Similarity=0.406 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-----CEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-----GKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+||+++|++|||||||++++.++.+...+.+|++.++....+.+. +..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888998887777776663 467899999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhc-------------------CCCCCcEEEEEeCCCCCCCcccCHH----HHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTH-------------------SDMNVVTILVGNKSDLKDAREVTTA----EGKALA 146 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-------------------~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~ 146 (223)
+|+|||++++.||+.+..|+..+... ...+.|++|||||+|+.+.+.++.+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999998653 1246899999999999765555444 355678
Q ss_pred HHcCCeEEEEccCCC
Q 027417 147 EAQGLFFMETSALDS 161 (223)
Q Consensus 147 ~~~~~~~~~~Sa~~~ 161 (223)
++.+++.++.++.++
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 899999888777644
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=5.4e-29 Score=182.86 Aligned_cols=152 Identities=22% Similarity=0.438 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+++|.+|||||||++++..+.+. .+.++.+.+... +.. ..+.+.+||+||++.+..++..+++++|++|+|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 466777765432 223 3578899999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHH-HHHHH----HHcCCeEEEEccCCCCCHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAE-GKALA----EAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
|++++.+++.+..|+..+... ...+.|+++++||+|+... ...++ ...+. ....+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999998877776432 2236899999999998642 22223 22221 1123457899999999999999
Q ss_pred HHHHH
Q 027417 169 QTVVT 173 (223)
Q Consensus 169 ~~l~~ 173 (223)
++|..
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99863
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1e-27 Score=184.42 Aligned_cols=167 Identities=30% Similarity=0.508 Sum_probs=144.4
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45566799999999999999999988888888888899898888877777888899999999999999889999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++|+|||+++..++..+..|+..+.... .+.|+++++||+|+.+ +....+ ...++...++.++++||++|.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999987654 3689999999999864 233333 345677788999999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 169 QTVVTEIYNI 178 (223)
Q Consensus 169 ~~l~~~~~~~ 178 (223)
.+|++.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999887643
No 109
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=8.3e-29 Score=184.62 Aligned_cols=156 Identities=22% Similarity=0.397 Sum_probs=121.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..+||+++|++|||||||++++..+.+. .+.+|.+.+... +.. ..+.+.+||+||++.+...+..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4599999999999999999999877664 456776765543 223 34789999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (223)
|+|++++.+++....|+..+... ...+.|++||+||+|+.+. ...++...... ...+.++++||++|.|+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999999998888776443 2246899999999998743 22333322211 1123477899999999999
Q ss_pred HHHHHHHHH
Q 027417 167 AFQTVVTEI 175 (223)
Q Consensus 167 ~~~~l~~~~ 175 (223)
+|++|...+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999997764
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=4.9e-28 Score=181.49 Aligned_cols=160 Identities=21% Similarity=0.386 Sum_probs=123.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...+||+++|++|||||||++++..+.+.. +.+|.+.++.. +.. ..+.+++||++|++.+..++..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--VEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 345899999999999999999998776653 56676655432 223 4578999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|++++.+++.+..++..+... ...++|+++|+||.|+.+. ...++...... ...+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999988877766432 2236899999999998642 23333222211 112357799999999999
Q ss_pred HHHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYNI 178 (223)
Q Consensus 166 ~~~~~l~~~~~~~ 178 (223)
++|++|.+.+.+.
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877554
No 111
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=3.5e-29 Score=184.77 Aligned_cols=164 Identities=31% Similarity=0.555 Sum_probs=148.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
...+|++|||+.++|||+|+-.+..+.++..+.||.- +-+...+.++ +..+.+.+|||+|++.|.+++...+..+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999965 6667778885 9999999999999999999998899999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCCe-EEEE
Q 027417 91 LLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGLF-FMET 156 (223)
Q Consensus 91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 156 (223)
++||++.++.||+++ .+|+.++..+++ +.|+|+||+|.|+.+. ..+..+++++++++.|+. |++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999998 789999999885 7999999999999742 367889999999999965 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
||++..|++++|+..+..++.
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999999887743
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=7e-28 Score=179.30 Aligned_cols=158 Identities=21% Similarity=0.363 Sum_probs=125.1
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......++|+++|++|||||||+++|.+..+ ..+.++.+... ..+.++ .+.+.+||+||++.+...+..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3445669999999999999999999998744 34556656433 334444 477899999999998888999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCC
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSS 162 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 162 (223)
++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..+++..+.. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 999999999999999998888777543 33479999999999987532 4455555543 245689999999999
Q ss_pred CHHHHHHHHHH
Q 027417 163 NVTAAFQTVVT 173 (223)
Q Consensus 163 ~i~~~~~~l~~ 173 (223)
|++++|++|+.
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.7e-27 Score=176.01 Aligned_cols=159 Identities=32% Similarity=0.384 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+|+|++|||||||+++|.++.+...+..+ ... ......+.+..+.+.+|||+|...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998876553332 222 2233345667789999999998887777777789999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHH
Q 027417 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEAQG--LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 169 (223)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+.... ..++...++.... .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 68888876544 7999999999999764432 1233334444333 3799999999999999999
Q ss_pred HHHHHHH
Q 027417 170 TVVTEIY 176 (223)
Q Consensus 170 ~l~~~~~ 176 (223)
.+...+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9987654
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=2.5e-27 Score=174.13 Aligned_cols=152 Identities=20% Similarity=0.340 Sum_probs=118.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+|+++|++|||||||+++|.+... ...+.++.+..... +. ...+.+.+|||||+..+...+..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44566776654332 22 24578899999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTH---SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (223)
|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 999999999988888877543 23479999999999987532 2222222211 1134589999999999999
Q ss_pred HHHHHHH
Q 027417 167 AFQTVVT 173 (223)
Q Consensus 167 ~~~~l~~ 173 (223)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=5.6e-27 Score=174.60 Aligned_cols=154 Identities=25% Similarity=0.411 Sum_probs=120.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..++|+++|++|+|||||++++..+.+.. +.++.+.++.. +.++ .+.+.+||+||++.+...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999877654 46666655432 3333 4788999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHH-HHHH----HHcCCeEEEEccCCCCCHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEG-KALA----EAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~ 166 (223)
|+|+++++++.....|+..+... ...+.|+++++||+|+... ...++. ..+. ...+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999999998888777766443 2246899999999998652 233332 2222 23456799999999999999
Q ss_pred HHHHHHH
Q 027417 167 AFQTVVT 173 (223)
Q Consensus 167 ~~~~l~~ 173 (223)
+|++|++
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=3.3e-27 Score=174.73 Aligned_cols=153 Identities=21% Similarity=0.327 Sum_probs=119.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
+|+++|++|||||||++++.+. +...+.+|.+.... .+.. ..+.+.+||+||++.+..++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 55667777776533 3333 34788999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccC-HHH---HHHHHHHcC--CeEEEEccCCC------C
Q 027417 96 ISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVT-TAE---GKALAEAQG--LFFMETSALDS------S 162 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~-~~~---~~~~~~~~~--~~~~~~Sa~~~------~ 162 (223)
++++.+++.+..|+..+.... ..++|+++|+||.|+...+... ..+ ...++...+ +++++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999999999886542 2478999999999997643211 111 122232233 45788999998 8
Q ss_pred CHHHHHHHHHH
Q 027417 163 NVTAAFQTVVT 173 (223)
Q Consensus 163 ~i~~~~~~l~~ 173 (223)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 117
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=3.6e-26 Score=170.14 Aligned_cols=140 Identities=38% Similarity=0.686 Sum_probs=126.5
Q ss_pred CCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcC
Q 027417 37 DEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS 116 (223)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 116 (223)
+.+...+.+|.|.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788999999988888889999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 117 DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 117 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
....|+++|+||+|+.+.+.+..+++..++...++.|+++||++|.|++++|++|++.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999876778888999999989999999999999999999999987763
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=8.5e-27 Score=171.10 Aligned_cols=152 Identities=26% Similarity=0.440 Sum_probs=118.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
+|+++|++|||||||++++.++.+.. ..++.+.+.. .+... ..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999987753 3566554432 33332 45789999999999998889999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH------HHHcCCeEEEEccCCCCCHHHHH
Q 027417 96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL------AEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
.+++.++..+..|+..+... ...+.|+++|+||+|+... ...++.... +...++++++|||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 99999999998888877543 2247999999999998642 222332221 22234579999999999999999
Q ss_pred HHHHH
Q 027417 169 QTVVT 173 (223)
Q Consensus 169 ~~l~~ 173 (223)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99863
No 119
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=4.3e-26 Score=181.04 Aligned_cols=143 Identities=27% Similarity=0.502 Sum_probs=123.4
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-------------EEEEEEEEeCCCchh
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-------------KEVKAQIWDTAGQER 75 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~D~~G~~~ 75 (223)
.+....+||+|+|+.|||||||+++|.++.+...+.+|+|.++....+.+++ ..+.+.||||+|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3456679999999999999999999999988888889999888777666642 568899999999999
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC------------CCCcEEEEEeCCCCCCCc---c---c
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD------------MNVVTILVGNKSDLKDAR---E---V 137 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~Dl~~~~---~---~ 137 (223)
+..++..+++++|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+...+ . +
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 999999999999999999999999999999999999976531 258999999999996542 2 3
Q ss_pred CHHHHHHHHHHcCC
Q 027417 138 TTAEGKALAEAQGL 151 (223)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (223)
..++++.++++.++
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 68899999999885
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=2.4e-26 Score=173.51 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=124.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
....++|+++|++|||||||++++.+..+. .+.++.+... ..+.+.+ +.+.+||+||+..+...+..+++.+|++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 345799999999999999999999987763 4555555433 3344444 6788999999999888889999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------cCCeE
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEA----------------QGLFF 153 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~ 153 (223)
++|+|+++..+++....|+..+.... ..+.|+++++||+|+.. .+..++.+..... ..+.+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 99999999999998888888775432 34699999999999864 4556666665532 22458
Q ss_pred EEEccCCCCCHHHHHHHHHHH
Q 027417 154 METSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
++|||+++.|++++|++|.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999764
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=7.1e-27 Score=171.36 Aligned_cols=151 Identities=23% Similarity=0.391 Sum_probs=114.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
||+++|++++|||||++++..+.+. ...++.+.+.. .+.. ..+.+++|||||++.+...+..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999877664 34556555443 2222 34788999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHH-hhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHH----HHcCCeEEEEccCCCCCHHHHHH
Q 027417 96 ISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALA----EAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
++++.++.....|+..+ ......+.|+++|+||+|+.+.. ...+.. .+. ...+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99998888776655544 33333469999999999987532 222222 221 11234699999999999999999
Q ss_pred HHHH
Q 027417 170 TVVT 173 (223)
Q Consensus 170 ~l~~ 173 (223)
+|++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9874
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.3e-26 Score=169.85 Aligned_cols=151 Identities=22% Similarity=0.387 Sum_probs=119.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
||+++|.+|||||||++++.+... ....++.+.+... +.+. .+.+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 4455555554433 3333 4688899999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 027417 96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
++++.++.....|+..+... ...+.|+++|+||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 99999999998888776553 33479999999999987543 2333333322 2346799999999999999999
Q ss_pred HHHH
Q 027417 170 TVVT 173 (223)
Q Consensus 170 ~l~~ 173 (223)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9864
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=2.3e-26 Score=169.99 Aligned_cols=152 Identities=22% Similarity=0.403 Sum_probs=117.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEF------YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+|+|+|++|||||||+++|.+... ...+.++.+.+.. .+.++ ...+.+|||||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 1233344444443 33344 4788899999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cCCeEEEEccCCC
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-------QGLFFMETSALDS 161 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 161 (223)
+++|+|.+++.+++....|+..+... ...+.|+++++||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 99999999999999988888776543 2347999999999998653 344444444332 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVT 173 (223)
Q Consensus 162 ~~i~~~~~~l~~ 173 (223)
.|+++++++|..
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.7e-25 Score=168.06 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=120.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+..++|+++|.+|||||||++++.+..+. .+.++.+.+. ..+.+. .+.+.+||+||+..+...+..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 55699999999999999999999987653 3344444332 223333 377889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCeEEEEcc
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA------------QGLFFMETSA 158 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 158 (223)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.. .++.++....... ....+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999999888887776543 224689999999999864 3455555443311 1234899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027417 159 LDSSNVTAAFQTVVTE 174 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~ 174 (223)
+++.|+++++++|..+
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=1.6e-25 Score=166.79 Aligned_cols=158 Identities=26% Similarity=0.428 Sum_probs=126.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.+..++|+++|..|||||||++++..+... ...||.|.+... +.+.+ +.+.+||.+|+..+...|..++..+|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eeeCc--EEEEEEeccccccccccceeecccccee
Confidence 367899999999999999999999976543 356676665544 34444 6788999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HcCCeEEEEccCCCCC
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE------AQGLFFMETSALDSSN 163 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~ 163 (223)
|+|+|.++.+.++.....+..+... ...+.|+++++||.|+.+. ...++...... ...+.++.|||.+|.|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999999999888877776543 3347999999999998753 45555554432 2234589999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998753
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=4.8e-25 Score=160.90 Aligned_cols=151 Identities=23% Similarity=0.395 Sum_probs=120.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEEC
Q 027417 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI 96 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 96 (223)
|+|+|++|||||||+++|.+..+...+.++.+..... ....+ +.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999998888888887766543 22333 7889999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHHHH
Q 027417 97 SRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 97 ~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
+++.++.....|+..+... ...++|+++|+||+|+..... ..+..... ....++++++|++++.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9999998888877776443 234689999999999875322 22222111 122357899999999999999999
Q ss_pred HHH
Q 027417 171 VVT 173 (223)
Q Consensus 171 l~~ 173 (223)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 864
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3.9e-25 Score=163.54 Aligned_cols=156 Identities=20% Similarity=0.183 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh---------chhHhhhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR---------AVTSAYYR 85 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~ 85 (223)
.+|+++|++|||||||+++|.+..+.....+..+.+...... ....+.+++|||||+.... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 479999999999999999999877643322221222222222 2235788999999973210 01111123
Q ss_pred CCCEEEEEEECCCHhhH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417 86 GAVGALLVYDISRRQTF--DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
.+|++|+|+|++++.++ +....|+..+.... .+.|+++|+||+|+.....+. +...+....+.+++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 36899999999987653 56667888876543 369999999999997544332 24455555677899999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++++|++|.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 128
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=1.6e-24 Score=152.49 Aligned_cols=161 Identities=20% Similarity=0.356 Sum_probs=131.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.+..++|+|+|..||||||++++|.+.. .....|+.|........ ..+++++||++|+...++.|.+||..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4558999999999999999999999755 45556777766655544 668999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHH------HHHHHHHcCCeEEEEccCCCCC
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKDAREVTTAE------GKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
|+|+|.+++..++.....+..+.. ..-.+.|+++++||.|+..+ ++.++ ..++++...++++.||+.+|++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 999999999999888777666532 23346899999999998843 22222 2344577889999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIYNI 178 (223)
Q Consensus 164 i~~~~~~l~~~~~~~ 178 (223)
+.+-++||+..++++
T Consensus 166 l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=6e-25 Score=164.24 Aligned_cols=154 Identities=23% Similarity=0.282 Sum_probs=114.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C-----CCCCCc------cceeEeEEEEEEE-----CCEEEEEEEEeCCCchhhh
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE--F-----YPNSKS------TIGVEFQTQKMDI-----NGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~--~-----~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~~~~ 77 (223)
+|+++|++++|||||+++|++.. + ...+.+ +.|.+........ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998732 1 111111 1233333332222 5667889999999999999
Q ss_pred chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe---EE
Q 027417 78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF---FM 154 (223)
Q Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 154 (223)
..+..+++.+|++|+|+|+++..+++....|..... .++|+++|+||+|+.+.. ..+...++++..+++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 999999999999999999999777777666654332 368999999999986422 122334556666654 89
Q ss_pred EEccCCCCCHHHHHHHHHHHH
Q 027417 155 ETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 155 ~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++||++|.|++++|++|...+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998653
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=5e-25 Score=163.20 Aligned_cols=157 Identities=20% Similarity=0.154 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch----hhhchhHhh---hcCCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----RFRAVTSAY---YRGAV 88 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~---~~~~d 88 (223)
+|+|+|.+|||||||+++|.+........+..+.......+.+.+ ...+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997654322222222222222333333 2478899999963 222223333 34699
Q ss_pred EEEEEEECCCH-hhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 027417 89 GALLVYDISRR-QTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNV 164 (223)
Q Consensus 89 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 164 (223)
++++|+|++++ .+++.+..|.+.+..... ..+|+++|+||+|+...... .+....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 799999999988866532 36899999999998764433 3344445555 3778999999999999
Q ss_pred HHHHHHHHHH
Q 027417 165 TAAFQTVVTE 174 (223)
Q Consensus 165 ~~~~~~l~~~ 174 (223)
+++|++|.++
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=3.2e-24 Score=156.11 Aligned_cols=158 Identities=35% Similarity=0.511 Sum_probs=128.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+++|.+|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+...+...++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887667777777777776677777668899999999999988888889999999999
Q ss_pred EECCCH-hhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 94 YDISRR-QTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 94 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|+... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||+++.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999887 6666664 67777665544478999999999997643 34444444555556679999999999999999886
Q ss_pred H
Q 027417 172 V 172 (223)
Q Consensus 172 ~ 172 (223)
-
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=8.8e-25 Score=166.82 Aligned_cols=157 Identities=22% Similarity=0.195 Sum_probs=114.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh---------hhchhH
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---------FRAVTS 81 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~ 81 (223)
.+..++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||... +...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 355689999999999999999999987654332222233333334444432 3688999999622 22221
Q ss_pred hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
..+..+|++++|+|++++.++.....|...+......++|+++|+||+|+.+..... ......+.+++++||+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence 235789999999999999888888778777766554568999999999987543221 334455678999999999
Q ss_pred CCHHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVTE 174 (223)
Q Consensus 162 ~~i~~~~~~l~~~ 174 (223)
.|+++++++|..+
T Consensus 191 ~gi~~l~~~L~~~ 203 (204)
T cd01878 191 EGLDELLEAIEEL 203 (204)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=4.1e-24 Score=158.81 Aligned_cols=154 Identities=23% Similarity=0.370 Sum_probs=117.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+....++|+|+|++|||||||++++.+..+. ...++.|.+.. .+...+ ..+.+||++|+..+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3345799999999999999999999987553 34555554433 333443 678899999998888888889999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--------eEEEEccCC
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL--------FFMETSALD 160 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~ 160 (223)
+++|+|+++..+++....|+..+... ...++|+++++||+|+.+... .++ +....++ +++++||++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE---IAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH---HHHHcCCcccCCCeEEEEEeECCC
Confidence 99999999999998887777665433 334699999999999865322 222 2222332 478999999
Q ss_pred CCCHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVT 173 (223)
Q Consensus 161 ~~~i~~~~~~l~~ 173 (223)
|.|++++|++|++
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999974
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=2.1e-24 Score=174.96 Aligned_cols=164 Identities=19% Similarity=0.099 Sum_probs=122.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYR 85 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~ 85 (223)
....|+|+|.|+||||||+++|++........+.++.......+.+. ....+.+||+||... ....+...++
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 34679999999999999999999865443333443444444444442 234678999999632 1222233456
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
.++++|+|+|+++.++++.+..|..++..+.. .++|+++|+||+|+........++...++...+.+++++||+++.|
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 79999999999998889999999999877643 3689999999999976544444445555566678899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIYN 177 (223)
Q Consensus 164 i~~~~~~l~~~~~~ 177 (223)
+++++++|.+.+.+
T Consensus 316 I~eL~~~L~~~l~~ 329 (335)
T PRK12299 316 LDELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877644
No 135
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=1.7e-24 Score=184.04 Aligned_cols=204 Identities=20% Similarity=0.161 Sum_probs=143.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCch----------hhhchh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----------RFRAVT 80 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~ 80 (223)
...++|+|+|.+|||||||+++|++.... ....++++.+.....+..++.. +.+|||||.. .+..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHH
Confidence 35699999999999999999999987643 2333444444445555566644 5699999952 233332
Q ss_pred -HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHH-HHHHHcCCeEEEE
Q 027417 81 -SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGK-ALAEAQGLFFMET 156 (223)
Q Consensus 81 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~-~~~~~~~~~~~~~ 156 (223)
..+++.+|++|+|+|++++.++..+. ++..+.. .++|+|+|+||+|+.+.... ...+.. .+.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23578999999999999988877764 3444332 36899999999999753211 111121 2222234689999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417 157 SALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 222 (223)
||++|.|++++|+.+.+.+. ....+. .........+.|..++++.+++|..|-...||.+..+|+
T Consensus 363 SAk~g~gv~~lf~~i~~~~~-~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~~ 434 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALE-SWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRILFATQASTRPPTFVLFTT 434 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEeC
Confidence 99999999999999986553 333332 234445566677789999999999999999999877664
No 136
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=5e-24 Score=179.88 Aligned_cols=203 Identities=22% Similarity=0.192 Sum_probs=139.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-----------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV----------- 79 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------- 79 (223)
...++|+++|.+++|||||+++|++..... ...+.++.+.....+..++ ..+.+|||||.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 456899999999999999999999865332 2222223333333444444 36789999996543222
Q ss_pred hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHHH----cCCeEE
Q 027417 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALAEA----QGLFFM 154 (223)
Q Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 154 (223)
....++.+|++|+|+|++++.+..... ++..+.. .+.|+++|+||+|+.+... ..++.. .+... .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceE
Confidence 123678999999999999887766543 3333322 2689999999999973111 111211 22222 247899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417 155 ETSALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 155 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 222 (223)
++||++|.|++++|+++...+... ..+. .........+.|..++++.+++|..|....||.+..+||
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~-~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n 396 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENA-NRRISTSKLNRVLEEAVAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGN 396 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh-cCcCCHHHHHHHHHHHHHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEc
Confidence 999999999999999998755433 2221 233444556677789999999999999999999988887
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=4.9e-24 Score=156.78 Aligned_cols=152 Identities=19% Similarity=0.167 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE---FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+.|+|+|++|||||||+++|++.. +.....++.+.+.....+.+.+ ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999642 2222223333333333444432 357899999999988777777788999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---cCCeEEEEccCCCCC
Q 027417 92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEA---QGLFFMETSALDSSN 163 (223)
Q Consensus 92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 163 (223)
+|+|+++ +.+.+.+. .+... . ..|+++++||+|+..... ...++..+.... .+.+++++||+++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 44443332 22211 1 248999999999875321 122333444443 467899999999999
Q ss_pred HHHHHHHHHH
Q 027417 164 VTAAFQTVVT 173 (223)
Q Consensus 164 i~~~~~~l~~ 173 (223)
++++++.+..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 138
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=150.92 Aligned_cols=173 Identities=27% Similarity=0.493 Sum_probs=150.3
Q ss_pred cccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhh
Q 027417 4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY 83 (223)
Q Consensus 4 ~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 83 (223)
.+.+...+.-.+||.++|++..|||||+-.++++.++..+..+.|+++..+.+.+.+..+.+.+||.+|++++..+....
T Consensus 10 ~~~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia 89 (205)
T KOG1673|consen 10 NSIPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA 89 (205)
T ss_pred CCCcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence 34455567778999999999999999999999999988889999999999999999999999999999999999999988
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC-----cccCHHHHHHHHHHcCCeEEEEcc
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-----REVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
-..+-+++++||++.+.+++++..|+++.+...+..+| |+||||.|+--. ...-..+++.+++..++++|.||+
T Consensus 90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~St 168 (205)
T KOG1673|consen 90 CKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCST 168 (205)
T ss_pred ecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeec
Confidence 89999999999999999999999999998876664455 789999996421 111234577888999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027417 159 LDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~~~~ 177 (223)
..+.|+..+|..+..++..
T Consensus 169 s~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 169 SHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred cccccHHHHHHHHHHHHhC
Confidence 9999999999998887754
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=159.57 Aligned_cols=170 Identities=36% Similarity=0.553 Sum_probs=138.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+++|++|||||||+++|.++.+...+.++.+..+...........+.+.+|||+|++++..++..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999988888877777777666665578899999999999999999999999999999
Q ss_pred EECCC-HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHc---CCeEEEEc
Q 027417 94 YDISR-RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQ---GLFFMETS 157 (223)
Q Consensus 94 ~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 157 (223)
+|.++ ..+++....|...+........|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 4556666889999888776679999999999998652 22233323222222 23389999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHHhhhh
Q 027417 158 AL--DSSNVTAAFQTVVTEIYNILSRKV 183 (223)
Q Consensus 158 a~--~~~~i~~~~~~l~~~~~~~~~~~~ 183 (223)
++ ++.++.++|..++..+.+......
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 99 999999999999988876655444
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=2.3e-24 Score=155.16 Aligned_cols=134 Identities=23% Similarity=0.253 Sum_probs=100.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch-----hhhchhHhhhcCCCEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE-----RFRAVTSAYYRGAVGA 90 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~~ 90 (223)
||+++|++|||||||+++|.+..+. +.++.+.+ +.. .+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 7999999999999999999987542 23332221 111 589999962 2333333 47899999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 169 (223)
|+|+|++++.++.. ..|...+ ..|+++|+||+|+.+ +....+++.++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988755 3444322 249999999999865 34456677777777776 799999999999999999
Q ss_pred HHH
Q 027417 170 TVV 172 (223)
Q Consensus 170 ~l~ 172 (223)
+|+
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=7.4e-23 Score=147.59 Aligned_cols=153 Identities=44% Similarity=0.767 Sum_probs=122.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC
Q 027417 19 LIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 19 i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 97 (223)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998777 44444553 6666667766677889999999998888888888899999999999999
Q ss_pred CHhhHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 98 RRQTFDSIGRWL-NELHTHSDMNVVTILVGNKSDLKDAREVTTAE-GKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 98 ~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
++.+++....|. .........+.|+++++||+|+.......... .........++++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999999988873 23333445579999999999987644333322 4455566678899999999999999999875
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=6.4e-23 Score=151.53 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
.|+|+|++|+|||||+++|....+.....++.+.+.....+... +....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887665433333333333333332 13567889999999998888888889999999999
Q ss_pred ECCCHh---hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHH------HcCCeEEEEccCCCCCH
Q 027417 95 DISRRQ---TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT-TAEGKALAE------AQGLFFMETSALDSSNV 164 (223)
Q Consensus 95 d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i 164 (223)
|+++.. +++.+. .+.. .+.|+++|+||+|+.+..... .+....+.. ...++++++|++++.|+
T Consensus 82 d~~~~~~~~~~~~~~----~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 82 AADDGVMPQTIEAIK----LAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred ECCCCccHHHHHHHH----HHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 999843 333222 2222 368999999999987432111 111111111 11357999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 165 TAAFQTVVTEI 175 (223)
Q Consensus 165 ~~~~~~l~~~~ 175 (223)
.+++++|.+..
T Consensus 155 ~~l~~~l~~~~ 165 (168)
T cd01887 155 DDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 143
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.3e-23 Score=151.50 Aligned_cols=148 Identities=17% Similarity=0.229 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh------hchhHhhh--cC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF------RAVTSAYY--RG 86 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~~~~~~--~~ 86 (223)
|+|+++|.|+||||||+|+|++........|..+.+.....+.+.+ ..+.++|+||.-+. ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999886655556666666666777766 56679999994222 22333333 68
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
.|++|+|+|+++.+.--.+ ..++... ++|+|+++||+|+.+...+.. ....+++.+++|++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999985432222 2233322 699999999999876444322 35667788899999999999999999
Q ss_pred HHHHH
Q 027417 167 AFQTV 171 (223)
Q Consensus 167 ~~~~l 171 (223)
++++|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=5.4e-24 Score=162.10 Aligned_cols=153 Identities=22% Similarity=0.266 Sum_probs=103.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC-----------chhhhch
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG-----------QERFRAV 79 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~ 79 (223)
+...++|+++|.+|||||||+++|.+..+.....+ +++.....+... .+.+||||| .+.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 34568999999999999999999998776544444 344443333332 578999999 4556555
Q ss_pred hHhhhc----CCCEEEEEEECCCHhhH-H---------HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 027417 80 TSAYYR----GAVGALLVYDISRRQTF-D---------SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL 145 (223)
Q Consensus 80 ~~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (223)
+..++. .++++++|+|.+....+ + .-......+. ..++|+++|+||+|+.... .+...++
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHH
Confidence 555553 35788888887653211 0 0011122222 2368999999999986533 3345556
Q ss_pred HHHcCC---------eEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 146 AEAQGL---------FFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 146 ~~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
+..+++ +++++||++| |+++++++|...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 666664 4899999999 99999999987663
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=6.3e-23 Score=166.22 Aligned_cols=161 Identities=21% Similarity=0.130 Sum_probs=117.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh----hchhHh---hhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----RAVTSA---YYR 85 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~---~~~ 85 (223)
....|+|+|.|+||||||+++|++........+.++.......+.+.+ ...+.+||+||.... ..+... .+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 347899999999999999999998654333333334444444444443 356789999996421 123333 345
Q ss_pred CCCEEEEEEECCCH---hhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417 86 GAVGALLVYDISRR---QTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 86 ~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
.++++|+|+|+++. .+++.+..|.+++..+.. .++|+++|+||+|+..... ..+..+.+.+..+.+++++||++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt 313 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT 313 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence 79999999999986 678888888888765532 3689999999999976432 23445566667788899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEI 175 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~ 175 (223)
+.|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1.1e-22 Score=148.75 Aligned_cols=147 Identities=17% Similarity=0.188 Sum_probs=109.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc------hhHhhhc--CCCEE
Q 027417 19 LIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA------VTSAYYR--GAVGA 90 (223)
Q Consensus 19 i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~ 90 (223)
|+|.+|+|||||++++.+........++++.+.....+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765444445445555555555554 5688999999876543 3455554 89999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|+|++++... ..|...+.. .++|+++++||+|+.....+... ...++..++++++++||.++.|+.+++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999986543 234434433 26899999999999765444333 45677778899999999999999999999
Q ss_pred HHHH
Q 027417 171 VVTE 174 (223)
Q Consensus 171 l~~~ 174 (223)
|.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8765
No 147
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=7.2e-23 Score=173.06 Aligned_cols=204 Identities=20% Similarity=0.173 Sum_probs=137.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc----------h-
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA----------V- 79 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~- 79 (223)
...++|+|+|.+|+|||||+++|++..... ...+.++.+.....+...+ ..+.+|||||...... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 457999999999999999999999765322 2222222222223333344 4567999999533211 1
Q ss_pred hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH----HHcCCeEEE
Q 027417 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALA----EAQGLFFME 155 (223)
Q Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~ 155 (223)
...+++.+|++|+|+|++++.+..... +...+.. .+.|+++|+||+|+.+... ..+...++. ....+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence 123568899999999999887665543 2333322 2689999999999874221 111111222 223578999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHhh------hhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417 156 TSALDSSNVTAAFQTVVTEIYNILSR------KVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 222 (223)
+||+++.|++++++.+.+...+...+ +..........+.|..++++.+++|..|.+..||.+..+||
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n 396 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVN 396 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeC
Confidence 99999999999999998655433221 11233444555677789999999999999999999988887
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=6.8e-23 Score=167.41 Aligned_cols=155 Identities=23% Similarity=0.217 Sum_probs=112.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch---------hhhchhHh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE---------RFRAVTSA 82 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~ 82 (223)
...++|+|+|.+|||||||+|+|++........+..+.+.....+.+.+ ...+.+|||+|.. .+...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 3458999999999999999999998765433333334445555565642 2478899999962 232222 2
Q ss_pred hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417 83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
.+.++|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.....+ ... .....+++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCC
Confidence 4688999999999999988888777766665554446899999999998643221 111 1223468999999999
Q ss_pred CHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTE 174 (223)
Q Consensus 163 ~i~~~~~~l~~~ 174 (223)
|++++++.|...
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998753
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=5.1e-23 Score=155.90 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCCC------------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR--DEFYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT 80 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 80 (223)
.+|+++|.+++|||||+++|++ +.+.... ..+.+.+.......+....+.+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 4443322 1223455555555555566789999999999999999
Q ss_pred HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcCCe
Q 027417 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAE-------AQGLF 152 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 152 (223)
..+++.+|++++|+|+++.. +.....|+..+.. .++|+++|+||+|+.+.+. ...++..++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2333334444332 2689999999999975332 12344444442 23678
Q ss_pred EEEEccCCCCCHHHH
Q 027417 153 FMETSALDSSNVTAA 167 (223)
Q Consensus 153 ~~~~Sa~~~~~i~~~ 167 (223)
++++||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887544
No 150
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.90 E-value=5.1e-22 Score=138.38 Aligned_cols=163 Identities=22% Similarity=0.346 Sum_probs=134.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh-hchhHhhhcCCCE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYP--NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-RAVTSAYYRGAVG 89 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-~~~~~~~~~~~d~ 89 (223)
..-||+++|..++|||++++.|+.++..+ ...+|+...+....-+-.+..-.+.|+||.|...+ ..+..+++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 45799999999999999999998776544 33355443333322223445557889999997776 7788899999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
+++||+..+++||+.+......|.+.. +..+|+++.+||+|+.+.+++..+.+..+++...+..+++++.+...+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 999999999999999887777776553 4569999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027417 169 QTVVTEI 175 (223)
Q Consensus 169 ~~l~~~~ 175 (223)
..++.++
T Consensus 168 ~~l~~rl 174 (198)
T KOG3883|consen 168 TYLASRL 174 (198)
T ss_pred HHHHHhc
Confidence 9998776
No 151
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.9e-23 Score=149.11 Aligned_cols=159 Identities=21% Similarity=0.387 Sum_probs=131.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.....+|+++|-.++||||++..|..+++... .||.|.......+ ..+.+++||.+|++.++.+|.+|+.+.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 46679999999999999999999998887655 8888887776665 368899999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEEccCCCCCH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEA-----QGLFFMETSALDSSNV 164 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i 164 (223)
|+|+|.++++.+...+..+..+..... ...|+++.+||.|+..+ .+..++.+.... ....+..|+|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999999887777765543 57999999999999864 344444333322 2345788999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 165 TAAFQTVVTEIY 176 (223)
Q Consensus 165 ~~~~~~l~~~~~ 176 (223)
.+.++++...+.
T Consensus 167 ~egl~wl~~~~~ 178 (181)
T KOG0070|consen 167 YEGLDWLSNNLK 178 (181)
T ss_pred HHHHHHHHHHHh
Confidence 999999987764
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=1.6e-22 Score=160.53 Aligned_cols=152 Identities=19% Similarity=0.151 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh--------chhHhhhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--------AVTSAYYRG 86 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~~ 86 (223)
+|+|+|.+|||||||+|+|++..+...+. +.++..... .+...+ ...+.+|||||..... ......+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987643222 221222222 222222 2468899999964321 123345689
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVT 165 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 165 (223)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 344444433 2689999999999874222 23344445444454 69999999999999
Q ss_pred HHHHHHHHHH
Q 027417 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
++++.|.+.+
T Consensus 154 ~L~~~l~~~l 163 (270)
T TIGR00436 154 FLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHhC
Confidence 9999997654
No 153
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=1e-22 Score=151.45 Aligned_cols=155 Identities=23% Similarity=0.186 Sum_probs=108.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhch---hHhhhcCCCEEE
Q 027417 19 LIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAV---TSAYYRGAVGAL 91 (223)
Q Consensus 19 i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~---~~~~~~~~d~~i 91 (223)
|+|++|||||||+++|.+........+.++.+.....+.+. ....+.+|||||... ...+ ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999876522222222223333333333 145678999999632 1122 234567899999
Q ss_pred EEEECCCH------hhHHHHHHHHHHHhhcCC-------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417 92 LVYDISRR------QTFDSIGRWLNELHTHSD-------MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 92 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
+|+|++++ .+++....|...+..... .+.|+++|+||+|+..................+.+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999998 578888888777765432 36999999999999765443333233444455677999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027417 159 LDSSNVTAAFQTVVTE 174 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~ 174 (223)
+++.|++++++.+...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998754
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=3.7e-22 Score=145.57 Aligned_cols=146 Identities=24% Similarity=0.233 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch--------hHhhhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSAYYR 85 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 85 (223)
++|+++|++|+|||||++++.+..... ...++.+........... ...+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876422 222232333333334334 356789999996554321 224567
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
.+|++++|+|++++.+......|.. ....|+++|+||+|+.+.... .....+.+++++||+++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999999877766554433 236999999999998764433 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 027417 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
+++++|...+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987643
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=7.9e-22 Score=165.50 Aligned_cols=154 Identities=23% Similarity=0.244 Sum_probs=114.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch--------hHh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSA 82 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~ 82 (223)
...++|+|+|++|||||||+++|++.... ....++++.+.....+.+++ ..+.+|||||....... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 45689999999999999999999986532 22334434555555666665 45689999997554322 235
Q ss_pred hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417 83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
+++.+|++|+|+|++++.+++.. |+..+.. .+.|+++|+||+|+.+. +...++...+.+++.+||++ .
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence 67899999999999998887765 6665532 36899999999998643 12345566778899999998 6
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~~ 179 (223)
|++++|+.|.+.+.+..
T Consensus 347 gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 347 KIKALVDLLTQKINAFY 363 (442)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999998876654
No 156
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=2.7e-21 Score=171.67 Aligned_cols=202 Identities=18% Similarity=0.150 Sum_probs=139.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----------hhchh-
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------FRAVT- 80 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~- 80 (223)
..++|+|+|.+|||||||+++|++.... ....++++.+.....+.+++. .+.+|||||... +..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 222333344444445555654 456999999532 22221
Q ss_pred HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCeEEE
Q 027417 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA-LAEA----QGLFFME 155 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~ 155 (223)
...++.+|++|+|+|++++.+...+..+ ..+.. .++|+++|+||+|+.+... .+.... +... ...+++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 2346889999999999998777766433 33332 3689999999999975321 111111 2111 1346799
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHhh------hhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417 156 TSALDSSNVTAAFQTVVTEIYNILSR------KVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 222 (223)
+||++|.|++++++.+.+.+.+...+ +..........+.|..++++.+++|..|-...||.+..+||
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~~ 673 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGKQPRILFATQASTRPPRFVIFTT 673 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCeeeeEEEEECCCCCCCEEEEEcC
Confidence 99999999999999998876542221 22233444556667788999999999999999999887765
No 157
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=3e-21 Score=160.37 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhchhHhh---hcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTSAY---YRGA 87 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~ 87 (223)
..|+|+|.|+||||||+++|++........+.++.......+.+. ....+.+||+||... ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 489999999999999999999876443333443444444444333 135688999999532 22233333 4569
Q ss_pred CEEEEEEECCCH---hhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417 88 VGALLVYDISRR---QTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 88 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
+++|+|+|+++. ++++....|..++..+.. .++|++||+||+|+... .+....+.+..+.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999865 677777888888776543 36899999999998432 344556666667789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEIYNI 178 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~ 178 (223)
|+++++++|.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998776543
No 158
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=8.7e-22 Score=160.61 Aligned_cols=154 Identities=22% Similarity=0.298 Sum_probs=105.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhchh-------Hh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVT-------SA 82 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~-------~~ 82 (223)
+..++|+++|.+|||||||+++|++..+..... +.++.+.....+..++ ..+.+|||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 455799999999999999999999877643211 1112223333344444 4678999999743 22221 12
Q ss_pred hhcCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccC
Q 027417 83 YYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSAL 159 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 159 (223)
.+..+|++|+|+|..+ +++.. ..|+..+... +.|+++|+||+|+... ...+..+++...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4679999999999765 34444 3455555433 4677889999998642 2345555555444 569999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027417 160 DSSNVTAAFQTVVTEI 175 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~ 175 (223)
+|.|++++|++|...+
T Consensus 200 tg~gv~eL~~~L~~~l 215 (339)
T PRK15494 200 SGKNIDGLLEYITSKA 215 (339)
T ss_pred CccCHHHHHHHHHHhC
Confidence 9999999999998764
No 159
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=7.8e-22 Score=137.75 Aligned_cols=114 Identities=33% Similarity=0.637 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFY--PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
||+|+|++|||||||+++|.+.... ..+.+..+.+..............+.+||++|.+.+...+...+..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998775 12223334444445566677777799999999988888878789999999999
Q ss_pred EECCCHhhHHHHHH---HHHHHhhcCCCCCcEEEEEeCCC
Q 027417 94 YDISRRQTFDSIGR---WLNELHTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 94 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~ivv~nK~D 130 (223)
||++++.+++.+.. |+..+..... +.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 99999999999754 5555555433 599999999998
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1.3e-21 Score=147.06 Aligned_cols=156 Identities=20% Similarity=0.189 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccc--------------eeEeEEEEEEECCEEEEEEEEeCCCchhhhchhH
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTI--------------GVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS 81 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 81 (223)
+|+|+|.+|+|||||+++|.+........... +.+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999876654432211 1222222222222346788999999998888888
Q ss_pred hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH-----------
Q 027417 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEA----------- 148 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~----------- 148 (223)
.++..+|++++|+|+.++.+... ..++..+.. .+.|+++++||+|+...... ..+...+....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 99999999999999988654433 233333332 36999999999998752221 12333333333
Q ss_pred ---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 149 ---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 149 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
...+++++||++|.|+++++++|.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346799999999999999999998764
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=2.2e-21 Score=168.11 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=116.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCc------cceeEeEEEEEEE-----CCEEEEEEEEeCCCch
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDE-------FYPNSKS------TIGVEFQTQKMDI-----NGKEVKAQIWDTAGQE 74 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~ 74 (223)
...+|+|+|+.++|||||+++|+... +...+.. ..|.++....+.+ ++..+.++||||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35799999999999999999998642 1111111 1244444433322 4567899999999999
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe--
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-- 152 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 152 (223)
.+...+..+++.+|++|+|+|+++..+.+....|...+. .+.|+++|+||+|+.... ..+...++...+++.
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999777777766655443 268999999999986432 122234555555653
Q ss_pred -EEEEccCCCCCHHHHHHHHHHHH
Q 027417 153 -FMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 153 -~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++++||++|.|++++|++|.+.+
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999997654
No 162
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=1.5e-21 Score=159.31 Aligned_cols=205 Identities=20% Similarity=0.196 Sum_probs=144.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh----------hch-hH
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----------RAV-TS 81 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~-~~ 81 (223)
..++|+|+|.|++|||||+|+|++.+.....+.. |++.......+......+.++||+|..+- ... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 5799999999999999999999997665444433 56665555554433345669999994432 222 22
Q ss_pred hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEE
Q 027417 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMET 156 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~ 156 (223)
..+..+|++++|+|++.+-+-+..+ ........+.++|+|+||+|+.+.++...++.+.-.. -..++++.+
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~----ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR----IAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH----HHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 3567899999999999876544321 1122223478999999999998764444444332222 224679999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCCC
Q 027417 157 SALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~ 223 (223)
||+++.++..+|+.+.. +++....+. .........+.+..+|++.+++|-.|-.-+||.+..+||.
T Consensus 332 SA~~~~~i~~l~~~i~~-~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~ 404 (444)
T COG1160 332 SALTGQGLDKLFEAIKE-IYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNR 404 (444)
T ss_pred EecCCCChHHHHHHHHH-HHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCCCCCEEEEEecc
Confidence 99999999999999874 555555444 2333344445666679999999999999999999998873
No 163
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=1.3e-21 Score=147.99 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCCCCC-----CccceeEeEEEEEE----------ECCEEEEEEEEeCCCchh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD----EFYPNS-----KSTIGVEFQTQKMD----------INGKEVKAQIWDTAGQER 75 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~l~D~~G~~~ 75 (223)
++|+++|++++|||||+++|++. .+...+ ..|.+.......+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111111 12222222222222 113367889999999876
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHH-HH-----
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKAL-AE----- 147 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~-~~----- 147 (223)
+..........+|++++|+|+++.........+. +.... +.|+++++||+|+..... ...++..+. ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444445557789999999998854433333222 11112 579999999999874321 112222221 11
Q ss_pred -HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 148 -AQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 148 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..+++++++||+++.|++++++.|..++
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2357899999999999999999998765
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.5e-21 Score=166.01 Aligned_cols=154 Identities=22% Similarity=0.195 Sum_probs=105.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--------hhchhHhh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSAY 83 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~ 83 (223)
..++|+|+|.+|||||||+++|++..... ...+..+.+.........+ ..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34799999999999999999999876432 2223323333333344444 4578999999652 33445567
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (223)
++.+|++|+|+|++++.++.. ..|...+.. .++|+++|+||+|+.... .+....+ ..+. ..+++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 889999999999998765432 334444432 369999999999986421 1222222 2333 25799999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEIYN 177 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~ 177 (223)
|++++|++|+..+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999987744
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=2.1e-21 Score=163.73 Aligned_cols=149 Identities=22% Similarity=0.220 Sum_probs=110.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch--------hHhh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSAY 83 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~ 83 (223)
..++|+++|.+|+|||||+++|++.... ....+.++.++....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 22333334444455555555 56789999997654322 2235
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
+..+|++|+|+|++++.+++....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999888776555543 2368999999999997533221 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIYN 177 (223)
Q Consensus 164 i~~~~~~l~~~~~~ 177 (223)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=2.6e-21 Score=141.75 Aligned_cols=141 Identities=17% Similarity=0.210 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch----hhhchhHhhhcCCCEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----RFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~~~~~d~~i 91 (223)
+|+++|.+|+|||||+++|.+... . ...+.+ ..+... .+|||||.. .+.......++.+|++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999886431 1 112211 122222 279999962 22222233468999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--eEEEEccCCCCCHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL--FFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~ 169 (223)
+|+|+++..++ +..|+..+. .+.|+++++||+|+.. ...+...+++...++ |++++||+++.|++++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~~----~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDIG----VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccc--cCHHHHhcc----CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999988765 234544431 2578999999999864 234566677777775 899999999999999999
Q ss_pred HHHHHHHHH
Q 027417 170 TVVTEIYNI 178 (223)
Q Consensus 170 ~l~~~~~~~ 178 (223)
.+.+.+.+.
T Consensus 141 ~l~~~~~~~ 149 (158)
T PRK15467 141 YLASLTKQE 149 (158)
T ss_pred HHHHhchhh
Confidence 998766433
No 167
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.4e-21 Score=142.57 Aligned_cols=146 Identities=19% Similarity=0.118 Sum_probs=99.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhHhhhcCCC
Q 027417 18 VLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYRGAV 88 (223)
Q Consensus 18 ~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d 88 (223)
+++|.+|+|||||+++|.+.... ....+..+.+.........+ ..+.+|||||+..+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999986422 11222223333333333443 6788999999776433 3345678899
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVTAA 167 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 167 (223)
++++|+|..++.+.... .+...+.. .+.|+++|+||+|+...... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876544332 12222222 25899999999998754322 222344565 6899999999999999
Q ss_pred HHHHHHH
Q 027417 168 FQTVVTE 174 (223)
Q Consensus 168 ~~~l~~~ 174 (223)
|++|++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999864
No 168
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=4.9e-21 Score=161.07 Aligned_cols=165 Identities=17% Similarity=0.093 Sum_probs=113.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hh---chhHhhh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FR---AVTSAYY 84 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~---~~~~~~~ 84 (223)
.....|+|+|.|+||||||+++|++........+.++.......+.+.+ ..+.+||+||... .. ......+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 3457899999999999999999998655443334434444444454544 5788999999532 11 1122345
Q ss_pred cCCCEEEEEEECCCH----hhHHHHHHHHHHHhhcC-----------CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 027417 85 RGAVGALLVYDISRR----QTFDSIGRWLNELHTHS-----------DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ 149 (223)
Q Consensus 85 ~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 149 (223)
..+|++|+|+|+++. +.++.+..|..++..+. ...+|+|+|+||+|+.+.... .+.........
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~ 313 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEAR 313 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHc
Confidence 789999999999853 34555555555554332 136899999999999754332 22223333455
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417 150 GLFFMETSALDSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 150 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 179 (223)
++++|++||+++.|+++++++|.+.+....
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 789999999999999999999998776544
No 169
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=4.4e-21 Score=160.18 Aligned_cols=158 Identities=21% Similarity=0.215 Sum_probs=110.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh--hchhH------hhhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF--RAVTS------AYYR 85 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~~~------~~~~ 85 (223)
.++|+|+|.+|||||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|..+. ...+. ..++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987654333333344444445555442 25679999996321 12222 2357
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNV 164 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 164 (223)
.+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+..... ... . ....+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCCH
Confidence 899999999999998888776555555444444789999999999864211 111 1 1123555 588999999999
Q ss_pred HHHHHHHHHHHHH
Q 027417 165 TAAFQTVVTEIYN 177 (223)
Q Consensus 165 ~~~~~~l~~~~~~ 177 (223)
++++++|...+..
T Consensus 351 deL~e~I~~~l~~ 363 (426)
T PRK11058 351 PLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987744
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=1.2e-20 Score=162.97 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=110.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
..+.++|+++|++++|||||+++|.+..+.....+..+.+.....+.+++. ..++||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 356789999999999999999999987776554443344444444444332 2678999999999999998889999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-------C--CeEEEEccCCC
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-------G--LFFMETSALDS 161 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 161 (223)
|+|+|+++...-+....+ ... ...+.|+++++||+|+... ..++....+... + .+++++||++|
T Consensus 163 ILVVda~dgv~~qT~e~i-~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI-SHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred EEEEECCCCCCHhHHHHH-HHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 999999873222222222 111 2236899999999998643 223333332222 2 46999999999
Q ss_pred CCHHHHHHHHH
Q 027417 162 SNVTAAFQTVV 172 (223)
Q Consensus 162 ~~i~~~~~~l~ 172 (223)
.|+++++++|.
T Consensus 236 eGI~eLl~~I~ 246 (587)
T TIGR00487 236 DGIDELLDMIL 246 (587)
T ss_pred CChHHHHHhhh
Confidence 99999999986
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.2e-20 Score=139.72 Aligned_cols=155 Identities=23% Similarity=0.188 Sum_probs=102.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CccceeEeEEEEEEECCEEEEEEEEeCCCchhh----------hc-hhH
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----------RA-VTS 81 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~-~~~ 81 (223)
.++|+++|++|+|||||+++|++....... .+..........+...+ ..+.+|||||.... .. ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999986533222 22222222233334444 34679999995432 10 112
Q ss_pred hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHc----CCeEEEE
Q 027417 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE-GKALAEAQ----GLFFMET 156 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~~~ 156 (223)
..+..+|++++|+|++++.+..... ++..+.. .+.|+++++||+|+........+. ...+.... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3457899999999999987755432 2233222 258999999999987643222222 22233333 3679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~ 174 (223)
||+++.|+.++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998753
No 172
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=2.3e-20 Score=141.46 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=105.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc----------hhhhchh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ----------ERFRAVT 80 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 80 (223)
.+..++|+|+|++|+|||||+++|++..+.....++.+.+........ ...+.+|||||. +.+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 456799999999999999999999987644444455454443333222 257889999994 3344444
Q ss_pred HhhhcC---CCEEEEEEECCCHhhHHH--HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCeE
Q 027417 81 SAYYRG---AVGALLVYDISRRQTFDS--IGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEAQGLFF 153 (223)
Q Consensus 81 ~~~~~~---~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 153 (223)
..+++. .+++++++|.+++.+... +..|+ .. .+.|+++++||+|+.+..+. ..++..........++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 555554 467888899887544322 22332 21 26889999999998754222 1222334444446789
Q ss_pred EEEccCCCCCHHHHHHHHHHHH
Q 027417 154 METSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+++||+++.|++++++.|...+
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999987655
No 173
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=134.13 Aligned_cols=154 Identities=23% Similarity=0.420 Sum_probs=125.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..+.+.++|-.+||||||++.+..+.+.....|+.|++... +....+.+.+||.||+..++..|+.|.+.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 45789999999999999999999888888888888876654 34466889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--------CeEEEEccCCCCC
Q 027417 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--------LFFMETSALDSSN 163 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~ 163 (223)
|+|..+++.++..+..+..+... .-.++|+++.|||.|+..+ .+... +..+.| +-+|.+|+++..|
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~---li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIA---LIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHH---HHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999998888877766665433 3347999999999999865 22222 222233 3479999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
|+-+..||+++-
T Consensus 170 id~~~~Wli~hs 181 (186)
T KOG0075|consen 170 IDITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=9.4e-21 Score=144.39 Aligned_cols=155 Identities=21% Similarity=0.188 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----ccceeEeEEEEEE-----------------------EC--C----
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK-----STIGVEFQTQKMD-----------------------IN--G---- 60 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~-----~~~~~~~~~~~~~-----------------------~~--~---- 60 (223)
++|+++|+.|+|||||+.+|.+...+.... .+....+....+. .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 589999999999999999997642211111 1111111111110 00 0
Q ss_pred EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH----hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
....+.||||||++.+...+...+..+|++++|+|++++ .+++.+..| ... . ..|+++|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~-~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-G-LKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-C-CCcEEEEEEchhccCHHH
Confidence 126789999999998888888888899999999999874 233333222 211 1 257899999999875322
Q ss_pred c--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 137 V--TTAEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 137 ~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
. ..++.+.+... .+++++++||++|.|++++|+.|.+.+
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1 12333344333 256799999999999999999987644
No 175
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2.2e-20 Score=154.35 Aligned_cols=162 Identities=22% Similarity=0.113 Sum_probs=114.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh-------hchhHhhhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-------RAVTSAYYRG 86 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~ 86 (223)
...|+|+|.|+||||||+|+|++........+.++.......+.+.+ ...+.++||||.... .......+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 34899999999999999999998665433334434444444444432 235789999996431 1112234688
Q ss_pred CCEEEEEEECC---CHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccC
Q 027417 87 AVGALLVYDIS---RRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSAL 159 (223)
Q Consensus 87 ~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 159 (223)
+|++++|+|++ +...++....|++++..+.. ..+|+++|+||+|+.....+ .+....+....+ .+++.+||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999998 45667777888887766532 35899999999998753332 333444545444 468999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027417 160 DSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~~~ 177 (223)
++.|++++++.|.+.+.+
T Consensus 317 tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCcCHHHHHHHHHHHhhh
Confidence 999999999999887754
No 176
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=1.7e-20 Score=137.76 Aligned_cols=156 Identities=22% Similarity=0.131 Sum_probs=102.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhHhhhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYR 85 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 85 (223)
..+|+++|++|||||||++++.+.......... .................+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999987543222211 1111122222333346788999999644322 2344578
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNV 164 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 164 (223)
.+|++++|+|.+++.+. ....+...+... +.|+++|+||+|+........+....+.... ..+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999987221 112233333322 5899999999998743332333344444444 357999999999999
Q ss_pred HHHHHHHHHH
Q 027417 165 TAAFQTVVTE 174 (223)
Q Consensus 165 ~~~~~~l~~~ 174 (223)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.8e-20 Score=162.37 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE---FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+.|+++|++++|||||+++|++.. +..+...+++.+.....+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999733 3333334444555444555555 77899999999999888888899999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHc----CCeEEEEccCCC
Q 027417 92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV--TTAEGKALAEAQ----GLFFMETSALDS 161 (223)
Q Consensus 92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 161 (223)
+|+|+++ +.+++.+. .+.. .++| +++|+||+|+.+...+ ..++...+.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 45554432 2221 2566 9999999999754322 233455555544 578999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVTEI 175 (223)
Q Consensus 162 ~~i~~~~~~l~~~~ 175 (223)
.|++++++.|...+
T Consensus 152 ~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 152 QGIGELKKELKNLL 165 (581)
T ss_pred CCchhHHHHHHHHH
Confidence 99999999887554
No 178
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=1.8e-20 Score=140.13 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=99.8
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch----------hhhch
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----------RFRAV 79 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~ 79 (223)
+....++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346678999999999999999999998764333444445444444443333 57899999942 23334
Q ss_pred hHhhhc---CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcC--Ce
Q 027417 80 TSAYYR---GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQG--LF 152 (223)
Q Consensus 80 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~ 152 (223)
...+++ .++++++|+|.+++.+..... ++..+.. .++|+++++||+|+..+.+ ...++.++.....+ ..
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 444554 468999999998865544432 2233332 2689999999999875322 22344455555543 47
Q ss_pred EEEEccCCCCCHH
Q 027417 153 FMETSALDSSNVT 165 (223)
Q Consensus 153 ~~~~Sa~~~~~i~ 165 (223)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999973
No 179
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=3.9e-20 Score=162.10 Aligned_cols=154 Identities=22% Similarity=0.242 Sum_probs=111.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeE--eEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVE--FQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
....++|+|+|++++|||||+++|....+........+.+ .+...+...+....++||||||++.|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4567899999999999999999999876654333222222 22223333345678999999999999999999999999
Q ss_pred EEEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHcC--CeEEEE
Q 027417 89 GALLVYDISRR---QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL-------AEAQG--LFFMET 156 (223)
Q Consensus 89 ~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~ 156 (223)
++|+|+|+++. .+++.+.. + ...+.|+|+++||+|+.... .++.... ...++ ++++++
T Consensus 321 iaILVVDA~dGv~~QT~E~I~~----~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAINY----I---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPI 390 (742)
T ss_pred EEEEEEECcCCCChhhHHHHHH----H---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEE
Confidence 99999999884 34433322 2 22368999999999987532 2222211 22233 689999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~ 174 (223)
||++|.|++++++.|...
T Consensus 391 SAktG~GIdeLle~I~~l 408 (742)
T CHL00189 391 SASQGTNIDKLLETILLL 408 (742)
T ss_pred ECCCCCCHHHHHHhhhhh
Confidence 999999999999998764
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=3.1e-20 Score=149.25 Aligned_cols=157 Identities=20% Similarity=0.182 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh--------chhHhhhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--------AVTSAYYR 85 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~ 85 (223)
.-.|+|+|++|||||||+|+|++.........+.++......+... ....+.+|||||..... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4569999999999999999999876643322221111111112122 23678899999964322 22334568
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCH
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNV 164 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 164 (223)
.+|++++|+|+++..+- .....+..+. ..+.|+++|+||+|+.............+....+ .+++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 89999999999983221 1122223332 2268999999999997433333344445544444 56999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 165 TAAFQTVVTEI 175 (223)
Q Consensus 165 ~~~~~~l~~~~ 175 (223)
++++++|...+
T Consensus 160 ~~L~~~L~~~l 170 (292)
T PRK00089 160 DELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHhC
Confidence 99999998765
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=5.4e-20 Score=162.54 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=110.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
...+...|+|+|+.++|||||+++|....+........+.+.....+.+++ ..++||||||+..|..++...+..+|+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence 356779999999999999999999998776544333333333333344443 578899999999999999988999999
Q ss_pred EEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHH--HHHHHHHcC--CeEEEEccCC
Q 027417 90 ALLVYDISRR---QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAE--GKALAEAQG--LFFMETSALD 160 (223)
Q Consensus 90 ~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~--~~~~~~~~~--~~~~~~Sa~~ 160 (223)
+|+|+|+++. .+.+.+ ......+.|+|+++||+|+...+. +..+. ...++..++ ++++++||++
T Consensus 364 aILVVdAddGv~~qT~e~i-------~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAI-------NHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEEEECCCCCCHhHHHHH-------HHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 9999999884 333322 112223689999999999965321 11110 011223333 6899999999
Q ss_pred CCCHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVT 173 (223)
Q Consensus 161 ~~~i~~~~~~l~~ 173 (223)
|.|++++|++|..
T Consensus 437 G~GI~eLle~I~~ 449 (787)
T PRK05306 437 GEGIDELLEAILL 449 (787)
T ss_pred CCCchHHHHhhhh
Confidence 9999999999875
No 182
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.6e-21 Score=137.84 Aligned_cols=164 Identities=29% Similarity=0.518 Sum_probs=143.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++++++|+.|.||||++.+++.+.+...+.+|+|.......+..+...+.+..|||+|++.+..+...++-+..+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45799999999999999999999999999999999999999888877666799999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
++||++..-++.++..|...+.+.+. ++|+|+.|||.|.... . .....-.+-...++.++++||+++-|...-|-++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r-~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR-K-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc-c-cccccceeeecccceeEEeecccccccccchHHH
Confidence 99999999999999999999887766 5999999999997642 2 2233334556678899999999999999999999
Q ss_pred HHHHHHH
Q 027417 172 VTEIYNI 178 (223)
Q Consensus 172 ~~~~~~~ 178 (223)
++++...
T Consensus 165 arKl~G~ 171 (216)
T KOG0096|consen 165 ARKLTGD 171 (216)
T ss_pred hhhhcCC
Confidence 9877443
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=1.4e-19 Score=157.16 Aligned_cols=158 Identities=22% Similarity=0.258 Sum_probs=113.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----CC------CccceeEeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDE--FYP-----NS------KSTIGVEFQTQKMDI-----NGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~ 73 (223)
+...+|+|+|+.++|||||+++|+... +.. .. ....|.+.....+.+ ++..+.++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999998631 110 00 011233333222222 455789999999999
Q ss_pred hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-
Q 027417 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF- 152 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 152 (223)
..+...+..+++.+|++|+|+|+++....+....|..... .+.|+++|+||+|+..... .....++....++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCc
Confidence 9999889999999999999999998766666656654332 2689999999999864321 22233444445554
Q ss_pred --EEEEccCCCCCHHHHHHHHHHHH
Q 027417 153 --FMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 153 --~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++++||++|.|+.+++++|.+.+
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhC
Confidence 89999999999999999998765
No 184
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=2.5e-20 Score=140.42 Aligned_cols=159 Identities=22% Similarity=0.220 Sum_probs=105.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------------CccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNS------------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
..++|+++|+.++|||||+++|+........ ....+................++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999864321111 0011112222222212455778899999999
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHH-HHHHHc---
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGK-ALAEAQ--- 149 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~~~~--- 149 (223)
.+.......+..+|++|+|+|+.+.-.... ...+..+... +.|+++++||+|+...+. ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 998888888999999999999987543322 2222233222 688999999999883211 0111222 333333
Q ss_pred ---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 150 ---GLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 150 ---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
.++++++||.+|.|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999988754
No 185
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=7.1e-20 Score=158.83 Aligned_cols=146 Identities=20% Similarity=0.219 Sum_probs=107.8
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch------hHhhh--cCCCEEEE
Q 027417 21 GDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV------TSAYY--RGAVGALL 92 (223)
Q Consensus 21 G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~~d~~i~ 92 (223)
|++|||||||+|+|++........++.+.+.....+..++ ..+++|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998776555555555555555555555 45789999998776443 23333 37999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|+|.++.+.. ..+..++. ..+.|+++|+||+|+.+.+.+. .+.+.+.+..+++++++||++|.|++++++.+.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874321 22222332 2369999999999987644443 346778888999999999999999999999998
Q ss_pred HHH
Q 027417 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.7e-19 Score=152.64 Aligned_cols=146 Identities=23% Similarity=0.190 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--------hhchhHhhhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSAYYR 85 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 85 (223)
++|+|+|.+|||||||+++|.+.... ....+..+.+.......+.+ ..+.+|||||... .......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 12223333344444455555 6789999999776 2333455678
Q ss_pred CCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCC
Q 027417 86 GAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSS 162 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 162 (223)
.+|++|+|+|++++.+.. .+..|+... +.|+++|+||+|+.+. .+...++ ...++. ++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998854332 234444431 6899999999996541 1222333 345664 8999999999
Q ss_pred CHHHHHHHHHH
Q 027417 163 NVTAAFQTVVT 173 (223)
Q Consensus 163 ~i~~~~~~l~~ 173 (223)
|+.++++.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999986
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=9.5e-20 Score=153.89 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCc--------hhhhchhHhhhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ--------ERFRAVTSAYYRG 86 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~~~ 86 (223)
+|+|+|.+|||||||+++|++..... ...+..+.+.........+ ..+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999866422 1222222333334444444 46889999996 3344556667889
Q ss_pred CCEEEEEEECCCHhhHHH--HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCC
Q 027417 87 AVGALLVYDISRRQTFDS--IGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSN 163 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (223)
+|++++|+|..++.+... +..|+.. .++|+++|+||+|+...... ..+ ...++. +++++||++|.|
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~------~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRK------SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH------hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCC
Confidence 999999999987544332 3334332 26899999999998753321 122 345676 599999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
+.++++.+...+
T Consensus 148 v~~ll~~i~~~l 159 (429)
T TIGR03594 148 IGDLLDAILELL 159 (429)
T ss_pred hHHHHHHHHHhc
Confidence 999999988765
No 188
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=141.05 Aligned_cols=158 Identities=20% Similarity=0.132 Sum_probs=107.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhHhhh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYY 84 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~ 84 (223)
+.--|+|+|.|+||||||+|++++.+....+...-++......+... ...++.++||||...... .....+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 44578999999999999999999988776554332222222223223 367889999999544322 233356
Q ss_pred cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCC
Q 027417 85 RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSN 163 (223)
Q Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (223)
..+|+++||+|.+++..- .-+..++.+.. .+.|+++++||+|..............+...... .++++||++|.|
T Consensus 84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 889999999999985432 11233334433 3689999999999886544223333333333333 499999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++.+.+.+...+
T Consensus 160 ~~~L~~~i~~~L 171 (298)
T COG1159 160 VDTLLEIIKEYL 171 (298)
T ss_pred HHHHHHHHHHhC
Confidence 999999987665
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=1.6e-19 Score=131.36 Aligned_cols=151 Identities=21% Similarity=0.167 Sum_probs=102.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc-------hhHhhhcCCCEE
Q 027417 19 LIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-------VTSAYYRGAVGA 90 (223)
Q Consensus 19 i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d~~ 90 (223)
|+|++|||||||++++.+.... ................... ....+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986554 2222222222222222222 145788999999665432 344577899999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA---EGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
++|+|..+........ |..... ..+.|+++|+||+|+......... .........+++++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987766554 333322 236899999999998764332221 122233445678999999999999999
Q ss_pred HHHHHHH
Q 027417 168 FQTVVTE 174 (223)
Q Consensus 168 ~~~l~~~ 174 (223)
+++|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=5.6e-19 Score=156.74 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=113.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch----------hHhh
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV----------TSAY 83 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------~~~~ 83 (223)
.++|+++|+||||||||+|+|++........ .|++...+...+......+.+|||||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4789999999999999999999875533333 355666555555556678899999997665321 1223
Q ss_pred h--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417 84 Y--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 84 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
+ ..+|++++|+|.++.+.. ..|..++.+ .+.|+++++||+|+.+.+.+ ....+.+.+.++++++++|++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 479999999999986442 223344433 26899999999998755444 34567788889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVTEI 175 (223)
Q Consensus 162 ~~i~~~~~~l~~~~ 175 (223)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999987653
No 191
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=7.5e-19 Score=120.87 Aligned_cols=156 Identities=22% Similarity=0.423 Sum_probs=126.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
.+++|+.+|-.++||||++..|..... ....||+|++.....+ ..+.+.+||.+|++..+.+|.+++....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 468999999999999999999997554 4567777877666554 56889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-----GLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 166 (223)
|+|..+.+.+++.+..+..+... .-...|+++.+||-|+..+ ...+++.++.+-. ...+.++++.+|.|+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 99999998888887776665433 2346888888999999865 4567777665432 23478899999999999
Q ss_pred HHHHHHHHH
Q 027417 167 AFQTVVTEI 175 (223)
Q Consensus 167 ~~~~l~~~~ 175 (223)
-|.+|...+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999987643
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=1.5e-18 Score=134.66 Aligned_cols=151 Identities=23% Similarity=0.210 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-------chhHhhhcCCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-------AVTSAYYRGAV 88 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 88 (223)
+|+|+|++|+|||||+++|++........+..+.+.....+.+.+ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998754333333333444455555554 578899999964322 23345789999
Q ss_pred EEEEEEECCCHh-hHHHHHHHHHHHhh--------------------------------------------c--------
Q 027417 89 GALLVYDISRRQ-TFDSIGRWLNELHT--------------------------------------------H-------- 115 (223)
Q Consensus 89 ~~i~v~d~~~~~-s~~~~~~~~~~i~~--------------------------------------------~-------- 115 (223)
++++|+|++++. ..+.+...+....- +
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998865 34333333321100 0
Q ss_pred -------------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 116 -------------SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 116 -------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
...-+|+++|+||+|+.. .++...++.. .+++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 011368899999999863 3444445443 4589999999999999999988654
No 193
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=7.7e-19 Score=151.53 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=103.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEEE------------ECCEEEEEEEEeCCCchhhh
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMD------------INGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~l~D~~G~~~~~ 77 (223)
..-|+++|++++|||||+++|.+..+..... ++.|......... ++.....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4569999999999999999999876643322 2222222211110 00011238899999999999
Q ss_pred chhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc------------CHHH-
Q 027417 78 AVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV------------TTAE- 141 (223)
Q Consensus 78 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~- 141 (223)
.++..+++.+|++++|+|+++ +.+++.+..+ .. .+.|+++++||+|+.+.... ..+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999997 5555554322 11 26899999999998642100 0000
Q ss_pred -----------HHHHHH------------Hc--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 142 -----------GKALAE------------AQ--GLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 142 -----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
...+.+ .+ .++++++||++|+|+++++++|....
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 011111 11 35799999999999999999886544
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=6.4e-19 Score=156.58 Aligned_cols=156 Identities=20% Similarity=0.147 Sum_probs=104.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--------hhchhHh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSA 82 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~ 82 (223)
.....+|+|+|.++||||||+++|++...... ..+.|++..............+.+|||||.+. +......
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 34467899999999999999999998654221 22234444443333322235688999999653 3334455
Q ss_pred hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027417 83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDS 161 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (223)
++..+|++|+|+|.++.-+... ..|...+.. .++|+++|+||+|+.+.. ....++. ..+. ..+++||++|
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g 421 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHG 421 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCC
Confidence 6789999999999987422111 234444433 378999999999986421 1222221 2333 2578999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVTEIY 176 (223)
Q Consensus 162 ~~i~~~~~~l~~~~~ 176 (223)
.|+++++++|++.+.
T Consensus 422 ~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 422 RGVGDLLDEALDSLK 436 (712)
T ss_pred CCchHHHHHHHHhcc
Confidence 999999999988764
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=2.4e-19 Score=150.97 Aligned_cols=159 Identities=19% Similarity=0.140 Sum_probs=107.0
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC----------------------C-----CccceeEeEEEEEEECC
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARD--EFYPN----------------------S-----KSTIGVEFQTQKMDING 60 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~----------------------~-----~~~~~~~~~~~~~~~~~ 60 (223)
.....++|+++|+.++|||||+.+|+.. ..... . ....|.+.......+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 3566799999999999999999999852 21100 0 01113444444455555
Q ss_pred EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCCCcc---
Q 027417 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKDARE--- 136 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--- 136 (223)
..+.+.||||||++.+.......+..+|++|+|+|+++++++..... +...+..... ..|+++++||+|+.+..+
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHHH
Confidence 56789999999999887777777889999999999998754321111 1111222222 357889999999974221
Q ss_pred -cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027417 137 -VTTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 137 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 169 (223)
...++...+++..+ ++++++||++|.|+.+.+.
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 12345556666655 5799999999999987553
No 196
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=8.4e-20 Score=130.02 Aligned_cols=162 Identities=22% Similarity=0.341 Sum_probs=122.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF-------YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY 83 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 83 (223)
....+.|+|+|..++|||||+.++..... +....+|.|.+..... +. ...+.+||.+|++..+++|..+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ec--cceeEEEEcCChHHHHHHHHHH
Confidence 34457899999999999999998764311 1122244444443333 33 4578899999999999999999
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHh-hcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HcCCeEEEE
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSDLKDAREVTTAEGKALAE------AQGLFFMET 156 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~ 156 (223)
+..++++|+++|.++++.|+.....++.+- ...-.+.|+++.+||-|+.+. +..++...... +..+++.++
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccc
Confidence 999999999999999999988876666653 334558999999999998853 33444443332 224669999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
||.+|+||++..+|+...+.++
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999888665
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=2.9e-19 Score=150.48 Aligned_cols=157 Identities=20% Similarity=0.161 Sum_probs=104.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------------------CccceeEeEEEEEEECCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-----------------------------KSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (223)
....++|+++|++++|||||+++|++..-.... ....|++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 456799999999999999999999843211100 012245555555556556
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDARE---- 136 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~---- 136 (223)
.+.+.+|||||++.+.......+..+|++|+|+|++++.++... ..++..+... . ..|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence 68899999999988876666667899999999999873222111 1222222222 1 246899999999875221
Q ss_pred cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027417 137 VTTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 137 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 169 (223)
...++...++...+ ++++++||++|.|+.+.++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 12244555555555 4699999999999997654
No 198
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=6.5e-22 Score=142.23 Aligned_cols=167 Identities=33% Similarity=0.614 Sum_probs=140.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
....++++|+|.-|+|||+++.+++...+...+..++|+++..+....+. ..++++|||++|++++..+..-+++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 46689999999999999999999999888888888988887666555544 44678899999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCe-EEEEccCCCCC
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTH----SDMNVVTILVGNKSDLKDAREV-TTAEGKALAEAQGLF-FMETSALDSSN 163 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 163 (223)
.++|||+++..+|+.+..|.+.+... .....|+|+..||||....... .......+.+.+++. ++++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 99999999999999999999997543 2345788999999998753222 235566788888876 99999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIYN 177 (223)
Q Consensus 164 i~~~~~~l~~~~~~ 177 (223)
+.|+-..++++++-
T Consensus 182 i~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 182 IPEAQRELVEKILV 195 (229)
T ss_pred hhHHHHHHHHHHHh
Confidence 99999999887743
No 199
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=3.6e-19 Score=145.41 Aligned_cols=149 Identities=22% Similarity=0.141 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh---------hchhHhhhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---------RAVTSAYYR 85 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~~ 85 (223)
..|+|+|.|+||||||+|+|++.......+.+ |++..............+.++||+|.+.. .......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p-GvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP-GVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC-CCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 67999999999999999999998766544433 55555444333334456889999996532 223445678
Q ss_pred CCCEEEEEEECCCHhhH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCC
Q 027417 86 GAVGALLVYDISRRQTF--DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSS 162 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 162 (223)
.||++|||+|....-+- +.+..|+. ..++|+|+|+||+|-.. ..+.+.+ ...+|.. ++.+||.+|.
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~----~e~~~~e-fyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLK----AEELAYE-FYSLGFGEPVPISAEHGR 151 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCch----hhhhHHH-HHhcCCCCceEeehhhcc
Confidence 99999999999874332 22333333 22699999999999652 1222333 3455665 9999999999
Q ss_pred CHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEI 175 (223)
Q Consensus 163 ~i~~~~~~l~~~~ 175 (223)
|+.+++++++..+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999998765
No 200
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.81 E-value=9.1e-19 Score=133.35 Aligned_cols=117 Identities=21% Similarity=0.357 Sum_probs=87.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC-CEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA-VGALLVY 94 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 94 (223)
+|+++|++|||||||+++|..+.+......+ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988765544332 2222221221123456789999999999988888889998 9999999
Q ss_pred ECCCH-hhHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCC
Q 027417 95 DISRR-QTFDSIGRWLNELHT---HSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 95 d~~~~-~s~~~~~~~~~~i~~---~~~~~~p~ivv~nK~Dl~~ 133 (223)
|..+. .++..+..|+..+.. ....++|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 677777666554432 1234799999999999864
No 201
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=9.5e-19 Score=143.32 Aligned_cols=155 Identities=25% Similarity=0.158 Sum_probs=113.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhH--------hh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS--------AY 83 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~--------~~ 83 (223)
..-++|+|+|.|+||||||+|+|.+.......+-. |+++......++-.++.+.+.||+|...-....+ ..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCC-CCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 45699999999999999999999998776555544 6666666555555558888999999665433322 34
Q ss_pred hcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417 84 YRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
+..+|.+++|+|.+.+.+ .+....+ ....++|+++|.||.|+......... ....+.+++.+|+++++
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGE 362 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCcc
Confidence 578999999999999632 2221122 33447999999999999865332111 22234568999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEIYNI 178 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~ 178 (223)
|++.+.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999998877665
No 202
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=7.3e-19 Score=134.48 Aligned_cols=149 Identities=25% Similarity=0.210 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC------------------------C-----ccceeEeEEEEEEECCEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNS------------------------K-----STIGVEFQTQKMDINGKEVKAQ 66 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~------------------------~-----~~~~~~~~~~~~~~~~~~~~~~ 66 (223)
||+|+|++|+|||||+++|++..-.... + ...|.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999753221110 0 0013333333334434456788
Q ss_pred EEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc----CHHHH
Q 027417 67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV----TTAEG 142 (223)
Q Consensus 67 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~ 142 (223)
+|||||+..+.......+..+|++|+|+|++++..-... .....+... . ..++|+|+||+|+.+.... ...+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 999999988776666778999999999999875322211 111222221 1 2457889999998743211 12344
Q ss_pred HHHHHHcCC---eEEEEccCCCCCHHHH
Q 027417 143 KALAEAQGL---FFMETSALDSSNVTAA 167 (223)
Q Consensus 143 ~~~~~~~~~---~~~~~Sa~~~~~i~~~ 167 (223)
+.+....+. +++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 455556663 4899999999999754
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=2.1e-18 Score=126.90 Aligned_cols=150 Identities=20% Similarity=0.234 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----------hhchhHhhhc
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------FRAVTSAYYR 85 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~ 85 (223)
.|+++|++|+|||||++.+.+........++.+.+........++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555444455545555444444443 778999999432 3333344443
Q ss_pred ---CCCEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHH--HcCCeEEEE
Q 027417 86 ---GAVGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAE--AQGLFFMET 156 (223)
Q Consensus 86 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~ 156 (223)
+.+++++++|..+..+ ...+..|+... +.|+++++||+|+...... .........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4678899999987532 23334454432 4899999999998643221 1112222222 334579999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 204
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=2.3e-18 Score=121.64 Aligned_cols=134 Identities=24% Similarity=0.300 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----chhhhchhHhhhcCCCEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i 91 (223)
||+++|+.|||||||+++|.+... .+..|..+. +.+ .++|||| +..+..........+|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998654 233331111 111 2589999 3445555556667999999
Q ss_pred EEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027417 92 LVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169 (223)
Q Consensus 92 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~ 169 (223)
++.|.+++.+ |.. .+... ..+|+|-|+||+|+.. +....+.++++.+..|+. +|++|+.+|+|++++.+
T Consensus 69 ll~dat~~~~~~pP------~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 69 LLQDATEPRSVFPP------GFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEecCCCCCccCCc------hhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 9999998654 221 12122 2589999999999984 234677888888888987 89999999999999998
Q ss_pred HHH
Q 027417 170 TVV 172 (223)
Q Consensus 170 ~l~ 172 (223)
.|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 873
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=4.9e-18 Score=147.07 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=113.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc--CCCCCCC------------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR--DEFYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA 78 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 78 (223)
...+|+|+|+.++|||||+++|+. +.+.... ....|.++......+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467999999999999999999986 3332211 12346666666666666778999999999999999
Q ss_pred hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcC
Q 027417 79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAE-------AQG 150 (223)
Q Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~ 150 (223)
.+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++++||+|+..++. ...++..++.. ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 99999999999999999987533222 222333222 3688999999999875432 12233444432 234
Q ss_pred CeEEEEccCCCC----------CHHHHHHHHHHHH
Q 027417 151 LFFMETSALDSS----------NVTAAFQTVVTEI 175 (223)
Q Consensus 151 ~~~~~~Sa~~~~----------~i~~~~~~l~~~~ 175 (223)
+|++.+||.+|. ++..+++.|+..+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 779999999998 5777777666544
No 206
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=120.44 Aligned_cols=158 Identities=22% Similarity=0.357 Sum_probs=119.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------CCCc--cceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------NSKS--TIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT 80 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 80 (223)
.....||+|.|+.++||||+++++....... .... ++++........+. ....++|++||||+++.-+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHHH
Confidence 3456899999999999999999998765311 1111 11222333333333 23567899999999999999
Q ss_pred HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEcc
Q 027417 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ--GLFFMETSA 158 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa 158 (223)
....+++.+.|+++|.+.+..+ .....+..+..... +|++|++||.|+... .+.+.++++.+.. +.+.++.+|
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeeeec
Confidence 9999999999999999999888 44555555544332 999999999999854 5667777776655 788999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027417 159 LDSSNVTAAFQTVVTE 174 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~ 174 (223)
.++++..+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999999988754
No 207
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=2.1e-18 Score=149.46 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCC------------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD--EFYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT 80 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 80 (223)
.+|+|+|+.++|||||+++|+.. .+.... ....|.+.......+....+.+.||||||+..|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 58999999999999999999862 222111 0112444444444444456889999999999999889
Q ss_pred HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcCCe
Q 027417 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKALAE-------AQGLF 152 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~ 152 (223)
..+++.+|++++|+|+.+.. ......|+..+... ++|+++++||+|+...+.. ..++..++.. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999998742 33334555555432 6899999999998754321 1233334332 23578
Q ss_pred EEEEccCCCC----------CHHHHHHHHHHHH
Q 027417 153 FMETSALDSS----------NVTAAFQTVVTEI 175 (223)
Q Consensus 153 ~~~~Sa~~~~----------~i~~~~~~l~~~~ 175 (223)
++.+||++|. |+..+|+.|+..+
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 9999999996 7888988887654
No 208
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=8.6e-18 Score=126.93 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=99.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC------CC--------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYP------NS--------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 79 (223)
.++|+++|+.++|||||+++|++..... .+ ....|.+.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4899999999999999999998631000 00 012244455555555555667889999999888777
Q ss_pred hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc-----C
Q 027417 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEAQ-----G 150 (223)
Q Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~ 150 (223)
....+..+|++++|+|+...-.-.. ...+..+... ++| +|+++||+|+....+. ..+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7888899999999999987432221 2223333322 455 7788999998642221 123455555544 3
Q ss_pred CeEEEEccCCCCCHH
Q 027417 151 LFFMETSALDSSNVT 165 (223)
Q Consensus 151 ~~~~~~Sa~~~~~i~ 165 (223)
++++++||.+|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999998853
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=1.1e-17 Score=144.97 Aligned_cols=157 Identities=19% Similarity=0.143 Sum_probs=102.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEEEE--CCEE-----E-----EEEEEeCCCchh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMDI--NGKE-----V-----KAQIWDTAGQER 75 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~-----~-----~~~l~D~~G~~~ 75 (223)
.+.+.|+|+|++++|||||+++|.+........ ++.|.+........ .+.. . .+++|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 345679999999999999999998765432222 22232222211100 0111 1 268999999999
Q ss_pred hhchhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----cCH--------H
Q 027417 76 FRAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE----VTT--------A 140 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----~~~--------~ 140 (223)
|..++...+..+|++|+|+|+++ +.+++.+..+ .. .+.|+++++||+|+..... ... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99988888899999999999997 6666655422 11 2689999999999852100 000 0
Q ss_pred -----------HHHHHHHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 141 -----------EGKALAEA---------------QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 141 -----------~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+....... ..++++++||++|.|++++++.+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00011111 135699999999999999998876443
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.79 E-value=3.3e-18 Score=143.05 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=104.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-cceeEeEEE----E------------EEE----CC------EEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKS-TIGVEFQTQ----K------------MDI----NG------KEVK 64 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~-~~~~~~~~~----~------------~~~----~~------~~~~ 64 (223)
+..++|+++|++++|||||+++|.+......... ..+.+.... . +.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4578999999999999999999976422111000 001111110 0 000 11 1467
Q ss_pred EEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHH
Q 027417 65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEG 142 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~ 142 (223)
+++||+||++.|...+......+|++++|+|++++.........+..+.... ..|+++++||+|+.+.... ..++.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 8999999999998888888889999999999996431111112222222221 2568999999998753221 12334
Q ss_pred HHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 143 KALAEAQ---GLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 143 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..+.... +++++++||++|.|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4444432 57899999999999999999987543
No 211
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.78 E-value=1.1e-17 Score=145.71 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEF---YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
-|+++|+.++|||||+++|++... ..+....++.+.....+... ....+.+|||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 588999999999999999997432 22222222233222222222 22357899999999998888888899999999
Q ss_pred EEECCC---HhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHcC---CeEEEEccCCCCC
Q 027417 93 VYDISR---RQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV--TTAEGKALAEAQG---LFFMETSALDSSN 163 (223)
Q Consensus 93 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~ 163 (223)
|+|+++ +.+.+.+. .+... +.| +++|+||+|+.+.... ..++..++....+ .+++++||++|.|
T Consensus 81 VVda~eg~~~qT~ehl~----il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHLA----ILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHHH----HHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 999987 34443332 22211 345 5789999998753221 1234445554444 6799999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++++++.|....
T Consensus 154 I~~L~~~L~~~~ 165 (614)
T PRK10512 154 IDALREHLLQLP 165 (614)
T ss_pred CHHHHHHHHHhh
Confidence 999999987543
No 212
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.78 E-value=7e-18 Score=130.79 Aligned_cols=164 Identities=20% Similarity=0.211 Sum_probs=108.7
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-----------
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------- 75 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------- 75 (223)
++.+..+.++|+|+|.|++|||||.|.+.+....+......+++....-+... ...++.|+||||.-.
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~ 143 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMM 143 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHH
Confidence 34556788999999999999999999999999888777665544444444333 456889999999211
Q ss_pred -hhchhHhhhcCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-------------cC--
Q 027417 76 -FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDARE-------------VT-- 138 (223)
Q Consensus 76 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~-- 138 (223)
........+.++|.+++++|+++.. ..+ ...+..+..+. ++|-|+|+||.|....+. +.
T Consensus 144 s~lq~~~~a~q~AD~vvVv~Das~tr--~~l~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 144 SVLQNPRDAAQNADCVVVVVDASATR--TPLHPRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred HhhhCHHHHHhhCCEEEEEEeccCCc--CccChHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 1112234557899999999999621 111 12233334443 588999999999754221 11
Q ss_pred -HHHHHHHHHH---------cCC----eEEEEccCCCCCHHHHHHHHHHHH
Q 027417 139 -TAEGKALAEA---------QGL----FFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 139 -~~~~~~~~~~---------~~~----~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
.+-..++... .++ .+|.+||++|+|++++-++|...+
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 1111122111 122 279999999999999999987654
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.78 E-value=4.4e-18 Score=142.23 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=104.0
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEE----EEE----------------EC--C----E
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQ----KMD----------------IN--G----K 61 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~----~~~----------------~~--~----~ 61 (223)
+..++.++|+++|+.++|||||+.+|.+...+.... ...|.+.... .+. .+ + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 456777999999999999999999997632211111 0001111111 000 00 0 1
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH----hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 137 (223)
...++||||||++.+..........+|++++|+|++++ .+.+.+.. +.... ..|+++|+||+|+.+....
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~~~--i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDIIG--IKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEEeeccccchhH
Confidence 35789999999988877666666788999999999964 33333222 22111 2468999999998753321
Q ss_pred --CHHHHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 138 --TTAEGKALAEAQ---GLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 138 --~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..++...++... +.+++++||+++.|++++++.|...+
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 123344444332 57899999999999999999987544
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=7.4e-18 Score=131.06 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=81.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-------------CCC---ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYP-------------NSK---STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 79 (223)
+|+++|++|+|||||+++|+...-.. .+. ...+.+.......+......+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998632110 000 11123333344444445678899999999998888
Q ss_pred hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
+..+++.+|++|+|+|+.+.... ....++..+... ++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 88899999999999999986443 234444444432 689999999999863
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=1.2e-17 Score=128.30 Aligned_cols=113 Identities=24% Similarity=0.302 Sum_probs=80.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------CccceeEeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNS-----------------KSTIGVEFQTQKMDI-----NGKEVKAQIWDTAGQ 73 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~ 73 (223)
+|+|+|+.|+|||||+++|+........ ....+.+.......+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432210 011122222222221 345688999999999
Q ss_pred hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
..+......++..+|++|+|+|+.+..+... ..|+..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888888999999999999988765543 334444332 258999999999975
No 216
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=3.2e-17 Score=136.58 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=99.9
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CCCccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
......++|+++|++++|||||+++|++..... ......|.+.......+......+.+|||||++
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 345667999999999999999999998631100 000122455555555565555678899999999
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREVT---TAEGKALAEAQG 150 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 150 (223)
.|.......+..+|++++|+|++....-.. ...+..+... ++| +|+++||+|+.+..+.. .++...+....+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 887777777789999999999987422222 1222222222 567 67889999987432221 234555555554
Q ss_pred -----CeEEEEccCCCC
Q 027417 151 -----LFFMETSALDSS 162 (223)
Q Consensus 151 -----~~~~~~Sa~~~~ 162 (223)
++++++||++|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 163 FPGDDIPVIRGSALKAL 179 (394)
T ss_pred CCcCCccEEEeeccccc
Confidence 579999999983
No 217
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=5.8e-17 Score=130.75 Aligned_cols=162 Identities=20% Similarity=0.195 Sum_probs=117.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc---------hhhhchh
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ---------ERFRAVT 80 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~ 80 (223)
.....+.|.++|..++|||||+|+|++........-+.+.+.....+.+.+ +..+.+.||.|. +.|.+..
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 345678999999999999999999998766555454445555666666664 456779999993 2233333
Q ss_pred HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
+.. ..+|++++|+|++++...+.+..-...+.......+|+|+|.||+|+..... ............+.+||++
T Consensus 267 EE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~ 340 (411)
T COG2262 267 EEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKT 340 (411)
T ss_pred HHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEecc
Confidence 333 6899999999999997777776666666666555699999999999775322 1111111111589999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~~ 178 (223)
+.|++.+++.|...+...
T Consensus 341 ~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 341 GEGLDLLRERIIELLSGL 358 (411)
T ss_pred CcCHHHHHHHHHHHhhhc
Confidence 999999999998877544
No 218
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.75 E-value=1.3e-17 Score=114.90 Aligned_cols=159 Identities=23% Similarity=0.317 Sum_probs=119.0
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
.+....++|+++|-.++|||||+..|.+... ....+|.|++.... ... ..+.+++||.+|+...+..|..|+.+.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v--~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKV--EYD-GTFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEE--eec-CcEEEEEEecCCccccchhhhhhhhccc
Confidence 3457789999999999999999999987443 34456656554433 333 4578999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHh-hcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCeEEEEccCCCC
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSDLKDAREVTTAEGKAL-----AEAQGLFFMETSALDSS 162 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 162 (223)
++|+|+|.++...|+++...+-++. ...-...|+.+.+||-|+..+.. .++...- .....+.+-+|||.+++
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--VEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--hHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 9999999999888998866555554 33445799999999999874322 2221111 11123457889999999
Q ss_pred CHHHHHHHHHH
Q 027417 163 NVTAAFQTVVT 173 (223)
Q Consensus 163 ~i~~~~~~l~~ 173 (223)
|+.+-.++++.
T Consensus 166 g~~dg~~wv~s 176 (185)
T KOG0074|consen 166 GSTDGSDWVQS 176 (185)
T ss_pred CccCcchhhhc
Confidence 99999988864
No 219
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=3.8e-17 Score=136.29 Aligned_cols=150 Identities=17% Similarity=0.132 Sum_probs=99.8
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCC-------------CCCC-CccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEF-------------YPNS-KSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
+...+.++|+++|+.++|||||+++|++... +... ....|.+.....+.++.....+.||||||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3456679999999999999999999974210 0000 0112445555556665566778899999999
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREVT---TAEGKALAEAQG 150 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 150 (223)
.|..........+|++++|+|+.+....+.. ..+..+... ++|.+ +++||+|+.+..+.. .++.+.++...+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 9877777777889999999999874222221 222222222 46655 689999987532211 234566666654
Q ss_pred -----CeEEEEccCCCC
Q 027417 151 -----LFFMETSALDSS 162 (223)
Q Consensus 151 -----~~~~~~Sa~~~~ 162 (223)
++++++||.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999874
No 220
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=5.4e-17 Score=135.31 Aligned_cols=153 Identities=18% Similarity=0.139 Sum_probs=101.4
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCC-------------CC-CCCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEF-------------YP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
...+..+.++|+++|++++|||||+++|++... +. ......|.+.......+......+.|+||||
T Consensus 5 ~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK12735 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG 84 (396)
T ss_pred hcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCC
Confidence 345567789999999999999999999986210 00 0001224555555555555556788999999
Q ss_pred chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHH
Q 027417 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREV---TTAEGKALAEA 148 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~ 148 (223)
++.|.......+..+|++++|+|+.+...-+. ..++..+.. .++|.+ +++||+|+.+..+. ..++...+...
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 99887777777889999999999987432222 222233322 257755 57999998742221 12345555555
Q ss_pred cC-----CeEEEEccCCCCC
Q 027417 149 QG-----LFFMETSALDSSN 163 (223)
Q Consensus 149 ~~-----~~~~~~Sa~~~~~ 163 (223)
.+ ++++++||.++.+
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 161 YDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred cCCCcCceeEEecchhcccc
Confidence 43 6799999999853
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.9e-17 Score=138.14 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=111.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh------hhchhHhhh--c
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER------FRAVTSAYY--R 85 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~------~~~~~~~~~--~ 85 (223)
..+|+++|+||+|||||.|+|++.+......|..+++.........+ .+++++|.||.-+ .......++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 45699999999999999999999877666666555555555555554 4578999999332 222333443 4
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
.+|++|-|+|.+|.+.--.+.-.+. ..+.|+|++.|++|..+.+-+ .....++.+.+|+|+++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltlQLl------E~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTLQLL------ELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHHHHH------HcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 6899999999998754333222222 227899999999998764433 334466778899999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
++...+.+..
T Consensus 154 ~l~~~i~~~~ 163 (653)
T COG0370 154 ELKRAIIELA 163 (653)
T ss_pred HHHHHHHHhc
Confidence 9999887533
No 222
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.3e-16 Score=117.69 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=110.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhch
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAV 79 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 79 (223)
+.+...-|+++|.++||||||||+|++.........|.|.+.....+.+++. +.++|.|| .+.+...
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3446689999999999999999999997755555666688777777777764 66999999 4456666
Q ss_pred hHhhhc---CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH---HHHHHHHHHcCCe-
Q 027417 80 TSAYYR---GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT---AEGKALAEAQGLF- 152 (223)
Q Consensus 80 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~- 152 (223)
...|+. +..++++++|...+-.-... ..++.+.. .++|+++++||+|.....+... ..+..+.......
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence 666764 35678899999886443222 22222222 2799999999999886433321 1111222222222
Q ss_pred -EEEEccCCCCCHHHHHHHHHHHHH
Q 027417 153 -FMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 153 -~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
++..|+.++.|++++...|.+.+.
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhh
Confidence 677899999999999998887653
No 223
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=5.7e-17 Score=127.20 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=115.7
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc-hh----hhc---hh
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ-ER----FRA---VT 80 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-~~----~~~---~~ 80 (223)
..+...+.|+|.|.|+||||||++++++......+.|+++-......+. ..+.+++++||||. ++ .+. ..
T Consensus 163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe--~~~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE--RGYLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeee--cCCceEEEecCCcccCCChHHhcHHHHHH
Confidence 3455678999999999999999999999988887777766555555543 34467889999992 11 111 11
Q ss_pred Hhhhc-CCCEEEEEEECCC--HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEE
Q 027417 81 SAYYR-GAVGALLVYDISR--RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMET 156 (223)
Q Consensus 81 ~~~~~-~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (223)
...++ -.++++|+||.+. ..+.+....++.++..... .|+++|.||+|..+...+ +++.......+. ....+
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~ 316 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKI 316 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccce
Confidence 22233 4778999999987 4567777888888887765 899999999998854333 333333344444 47889
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~ 175 (223)
++..+.+++.+.+.+...+
T Consensus 317 ~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 317 SATKGCGLDKLREEVRKTA 335 (346)
T ss_pred eeeehhhHHHHHHHHHHHh
Confidence 9999999998887776654
No 224
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=1.1e-17 Score=128.92 Aligned_cols=147 Identities=20% Similarity=0.127 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--------------------------CCC---ccceeEeEEEEEEECCEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYP--------------------------NSK---STIGVEFQTQKMDINGKEVKAQ 66 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~--------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~ 66 (223)
+|+|+|++++|||||+.+|+...-.. ... ...|.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996421100 000 1113334444444444567889
Q ss_pred EEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh-------hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC--ccc
Q 027417 67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-------TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA--REV 137 (223)
Q Consensus 67 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~ 137 (223)
+|||||+..+...+...+..+|++|+|+|+++.. ..+....| ...... . .+|+++++||+|+... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL-G-VKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc-C-CCeEEEEEEccccccccccHH
Confidence 9999999887777777778899999999999842 11222222 222222 1 3688999999998732 111
Q ss_pred ----CHHHHHHHHHHcC-----CeEEEEccCCCCCHH
Q 027417 138 ----TTAEGKALAEAQG-----LFFMETSALDSSNVT 165 (223)
Q Consensus 138 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 165 (223)
..++...+....+ ++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1122233344443 569999999999987
No 225
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.74 E-value=1.1e-17 Score=139.50 Aligned_cols=162 Identities=27% Similarity=0.314 Sum_probs=122.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...+||+|+|+.|+||||||-+|+...+.+...+-.... .....+....+..+++|++..+.........++.+|++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i--~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI--LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc--ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 345999999999999999999999988876555332211 111333445567889999866665566677789999999
Q ss_pred EEEECCCHhhHHHH-HHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcC-Ce-EEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSI-GRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAE-GKALAEAQG-LF-FMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~~-~~~~Sa~~~~~i~ 165 (223)
++|+++++.+++.+ .+|+..++.... .+.|+|+||||+|..+....+.+. ..-+...+. +. +++|||++-.++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 99999999999999 579999987752 379999999999998765443333 333444332 33 7999999999999
Q ss_pred HHHHHHHHHH
Q 027417 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
++|....+.+
T Consensus 165 e~fYyaqKaV 174 (625)
T KOG1707|consen 165 ELFYYAQKAV 174 (625)
T ss_pred hhhhhhhhee
Confidence 9998776544
No 226
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=4.6e-18 Score=117.52 Aligned_cols=157 Identities=24% Similarity=0.356 Sum_probs=116.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+...+|+++|-.|+||||++.++.-++.. ...|++|.+...... ....+++||.+|+.+.+..|..++.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEE
Confidence 36789999999999999998888766654 345565665544332 6688999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA-----LAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|.+|......... ++..+.+..-.+..+++++||.|.... ....|+.. -.+..-+.+|++||.+|+|++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 9999999877665543 344444333334667788999997642 22333222 122333669999999999999
Q ss_pred HHHHHHHHHH
Q 027417 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
+.++||.+-+
T Consensus 169 ~~~DWL~~~l 178 (182)
T KOG0072|consen 169 PAMDWLQRPL 178 (182)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 227
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=124.59 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=112.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh-------hchhHhhhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-------RAVTSAYYRG 86 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~ 86 (223)
...|.++|-|++|||||+++|...+......++++.......+.+++ ...+++-|.||.-.- .......++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHh
Confidence 35688999999999999999998776555555545555555444443 234889999994332 1122334578
Q ss_pred CCEEEEEEECCCH---hhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCC
Q 027417 87 AVGALLVYDISRR---QTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALD 160 (223)
Q Consensus 87 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 160 (223)
++.+++|+|++.+ ..++.++....++..+ .-...|.++|+||+|+.++. .....++++.+.-+ ++++||++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999998 7777777666665433 23468999999999986431 22235666666655 99999999
Q ss_pred CCCHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTE 174 (223)
Q Consensus 161 ~~~i~~~~~~l~~~ 174 (223)
++|+.++++.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=3.1e-16 Score=131.30 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=102.1
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------CCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPN--------------SKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
-+......++|+++|++++|||||+++|++...... .....|.+.......+......+.|+||||
T Consensus 5 ~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPG 84 (409)
T CHL00071 5 KFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (409)
T ss_pred hccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCC
Confidence 344566779999999999999999999986411100 001124444444445544556778999999
Q ss_pred chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHH
Q 027417 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEA 148 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~ 148 (223)
+..+.......+..+|++++|+|+.....-.. ...+..+.. .++| +|+++||+|+.+..+. ..++...+...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 98887777778889999999999986432221 222222222 2567 7788999999753221 12344555554
Q ss_pred cC-----CeEEEEccCCCCCH
Q 027417 149 QG-----LFFMETSALDSSNV 164 (223)
Q Consensus 149 ~~-----~~~~~~Sa~~~~~i 164 (223)
.+ ++++++||.+|.++
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred hCCCCCcceEEEcchhhcccc
Confidence 43 67999999998754
No 229
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.71 E-value=5.7e-16 Score=119.45 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=95.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc-----------------------ceeEeEEEE-------------EEEC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKST-----------------------IGVEFQTQK-------------MDIN 59 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~ 59 (223)
||+++|+.++|||||+.+|..+.+....... .|.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976554322100 011100000 0011
Q ss_pred CEEEEEEEEeCCCchhhhchhHhhhc--CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417 60 GKEVKAQIWDTAGQERFRAVTSAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 137 (223)
.....++++|+||++.+.......+. .+|++++|+|+.....-. -..++..+.. .++|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 12356889999999888665555553 699999999998753321 1223333322 25899999999998643221
Q ss_pred C--HHHHHHHHH--------------------------HcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 138 T--TAEGKALAE--------------------------AQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 138 ~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
. .++...+.. ...+|+|.+|+.+|+|++++...|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 112222222 1124799999999999999997764
No 230
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.71 E-value=9e-16 Score=116.41 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=96.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcccee---EeEEEEEEECCEEEEEEEEeCCCchhhhchh-----Hhhhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGV---EFQTQKMDINGKEVKAQIWDTAGQERFRAVT-----SAYYR 85 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-----~~~~~ 85 (223)
.++|+|+|.+|+|||||+|+|++.........+.+. +.....+.. .....+.+||+||........ ...+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986554322222221 111111111 112367899999965322222 22256
Q ss_pred CCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHHH----HHHc
Q 027417 86 GAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDARE-----------VTTAEGKAL----AEAQ 149 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~----~~~~ 149 (223)
.+|+++++.+. .+... ..|++.+... +.|+++|+||+|+..... ...++.+.. ....
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78988887542 23333 3455555543 579999999999843211 011111111 1221
Q ss_pred C---CeEEEEccC--CCCCHHHHHHHHHHHHHHHHhh
Q 027417 150 G---LFFMETSAL--DSSNVTAAFQTVVTEIYNILSR 181 (223)
Q Consensus 150 ~---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~~~ 181 (223)
+ .++|.+|+. .+.++..+.+.|+..+.++..-
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 2 348999998 6799999999999888765543
No 231
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=9.1e-16 Score=127.61 Aligned_cols=153 Identities=20% Similarity=0.221 Sum_probs=110.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+.+=|.++|+...|||||+..+..........-.++.+..-..+..+. ....++|+|||||+.|..++..-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 456789999999999999999998776544333333333333443331 2346889999999999999999999999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHcC--CeEEEEccC
Q 027417 92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL-------AEAQG--LFFMETSAL 159 (223)
Q Consensus 92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~ 159 (223)
+|+++++ |++.+. +......+.|+|+++||+|+.+.+. .....- .+.++ ..++++||+
T Consensus 84 LVVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~~VpvSA~ 153 (509)
T COG0532 84 LVVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVIFVPVSAK 153 (509)
T ss_pred EEEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence 9999998 555444 2223334899999999999985422 222211 22232 358999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027417 160 DSSNVTAAFQTVVTEI 175 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~ 175 (223)
+|+|+.++++.++-..
T Consensus 154 tg~Gi~eLL~~ill~a 169 (509)
T COG0532 154 TGEGIDELLELILLLA 169 (509)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987433
No 232
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.71 E-value=6e-16 Score=121.17 Aligned_cols=155 Identities=21% Similarity=0.159 Sum_probs=113.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYY 84 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~ 84 (223)
.-..+|+++|.|++|||||++.|++........++++.+..+..+.+++ ..+++.|+||.-. .........
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3457899999999999999999999887776677767777777776666 7788999998322 123455677
Q ss_pred cCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCC---------------------------------------------
Q 027417 85 RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDM--------------------------------------------- 118 (223)
Q Consensus 85 ~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--------------------------------------------- 118 (223)
++||++|+|+|+..... .+-+...+....-+.+.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999997554 44444433332211111
Q ss_pred --------------------CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 119 --------------------NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 119 --------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
-+|.++|.||.|+.. .++...+.+.. ..+.+||+.+.|++++.+.|-..+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 267899999999874 34444444444 689999999999999999987655
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.70 E-value=1.7e-16 Score=133.79 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=103.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCC--CC------------------------CC---CccceeEeEEEEEEECCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF--YP------------------------NS---KSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~--~~------------------------~~---~~~~~~~~~~~~~~~~~~ 61 (223)
..+.++|+++|+.++|||||+.+|+...- .. .. ...-|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 45679999999999999999998874211 00 00 011134444445556666
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHH-------HHHHHHHHHhhcCCCCC-cEEEEEeCCCCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFD-------SIGRWLNELHTHSDMNV-VTILVGNKSDLKD 133 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~ 133 (223)
...++++|+||++.|.......+..+|++|+|+|+++. .|+ ..+..+..+.. .++ ++|+++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence 77889999999999999999999999999999999873 232 22222222221 245 4688899999762
Q ss_pred Cc--c----cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 027417 134 AR--E----VTTAEGKALAEAQG-----LFFMETSALDSSNVTA 166 (223)
Q Consensus 134 ~~--~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 166 (223)
.. + -..++++.++...+ ++|+++||.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 10 1 11345666667665 6799999999999864
No 234
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=1.3e-15 Score=120.38 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------C---ccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS-----------------K---STIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~-----------------~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.+|+|+|++|+|||||+++|+...-.... . ...+.+.......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 68999999999999999999852111000 0 001223334444555566889999999998
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
.+.......++.+|++|+|+|.++.... ....++..... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 8877777788999999999999875332 22333333322 36899999999998754
No 235
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=5.4e-16 Score=119.13 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------------ccceeEeE--EEEEEEC--------CEEEEEEEEeC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK--------------STIGVEFQ--TQKMDIN--------GKEVKAQIWDT 70 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~--------------~~~~~~~~--~~~~~~~--------~~~~~~~l~D~ 70 (223)
.+|+|+|+.++|||||+++|+...-..... ..-|.+.. .....+. +..+.+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 379999999999999999997532110000 00011111 1122222 34788999999
Q ss_pred CCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 71 AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 71 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
||+..|.......++.+|++|+|+|+.+..+.+....|.. .. ..++|+++++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-AL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HH---HcCCCEEEEEECCCcc
Confidence 9999999999999999999999999998765554333222 22 2257999999999976
No 236
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=1.1e-15 Score=121.36 Aligned_cols=143 Identities=15% Similarity=0.239 Sum_probs=93.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---h
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPN----------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---V 79 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~ 79 (223)
-.++|+|+|.+|+|||||+++|++..+... ..++.+.......+..++..+.+.+|||||...... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876543 234444455555566677788999999999432211 0
Q ss_pred -----------------------hHhhhc--CCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 80 -----------------------TSAYYR--GAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 80 -----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
+...+. .+|+++++++.+... +... ...++.+. . .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence 001122 477888888876521 1111 22233332 2 589999999999865
Q ss_pred Cc--ccCHHHHHHHHHHcCCeEEEEccCC
Q 027417 134 AR--EVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
.. ......+++.+..+++++|......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 32 2345556777888899988776543
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.69 E-value=1.9e-15 Score=126.03 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=100.6
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC------C--------CCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP------N--------SKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
........++|+++|++++|||||+++|++..... . .....|.+.......+......+.++||||
T Consensus 5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG 84 (396)
T ss_pred hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence 34455778999999999999999999998731100 0 001224555555555554556788999999
Q ss_pred chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHH
Q 027417 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREV---TTAEGKALAEA 148 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~ 148 (223)
+..+.......+..+|++++|+|+..+..-.. ..++..+... +.|.+ +++||+|+.+..+. ...+...+...
T Consensus 85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 98887777777899999999999987432222 2223333322 57875 57999998742221 12234444444
Q ss_pred c-----CCeEEEEccCCCCC
Q 027417 149 Q-----GLFFMETSALDSSN 163 (223)
Q Consensus 149 ~-----~~~~~~~Sa~~~~~ 163 (223)
. +++++++||.++.+
T Consensus 161 ~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 161 YDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred cCCCccCCcEEEeecccccC
Confidence 3 36799999998753
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=6e-16 Score=131.45 Aligned_cols=156 Identities=21% Similarity=0.164 Sum_probs=99.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------C------------------ccceeEeEEEEEEE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-------------K------------------STIGVEFQTQKMDI 58 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-------------~------------------~~~~~~~~~~~~~~ 58 (223)
.....++|+++|++++|||||+.+|+...-.... . ..-|.+.......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 3466799999999999999999999754221110 0 00122333334444
Q ss_pred CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417 59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (223)
......+.||||||++.+.......+..+|++++|+|+...-.-...+.+. .+... . ..|+|+++||+|+.+.++..
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g-~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL-G-IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh-C-CCceEEEEEeeccccchhHH
Confidence 445567889999999888766666679999999999998643211111111 11111 1 24788999999987432211
Q ss_pred HHH----HHHHHHHc----CCeEEEEccCCCCCHHHHH
Q 027417 139 TAE----GKALAEAQ----GLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 139 ~~~----~~~~~~~~----~~~~~~~Sa~~~~~i~~~~ 168 (223)
.++ ...+.... ..+++++||++|.|+.+.-
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 222 22233333 3679999999999998654
No 239
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=8.5e-16 Score=128.49 Aligned_cols=150 Identities=23% Similarity=0.191 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------C------------------ccceeEeEEEEEEECCEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS-------------K------------------STIGVEFQTQKMDINGKEV 63 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~~~~~ 63 (223)
++|+++|+.++|||||+.+|+...-.... . ..-|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999743211000 0 0112233333444444456
Q ss_pred EEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH----
Q 027417 64 KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT---- 139 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~---- 139 (223)
.+.||||||++.|.......+..+|++|+|+|+.....-+..+.|. .+... . ..++|+++||+|+.+...-..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~-~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-G-IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-C-CCcEEEEEEecccccchHHHHHHHH
Confidence 7889999999998777777889999999999998653222222221 12221 1 246888999999875322111
Q ss_pred HHHHHHHHHcC---CeEEEEccCCCCCHHHH
Q 027417 140 AEGKALAEAQG---LFFMETSALDSSNVTAA 167 (223)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~ 167 (223)
++...+....+ ++++++||.+|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 22233334443 46999999999999863
No 240
>PLN03126 Elongation factor Tu; Provisional
Probab=99.67 E-value=1.6e-15 Score=128.53 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=100.7
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCC------CC--------CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEF------YP--------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
.....++|+++|++++|||||+++|++... .. ......|.+.......+......+.++|+||++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 356789999999999999999999985211 00 0011224444444444544456788999999999
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc--
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEAQ-- 149 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-- 149 (223)
|.......+..+|++++|+|+.+...-.. ..++..+... ++| +|+++||+|+.+..+. ..++...+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 98888888889999999999987533222 2233333322 567 7788999998753221 122444455443
Q ss_pred ---CCeEEEEccCCCCCH
Q 027417 150 ---GLFFMETSALDSSNV 164 (223)
Q Consensus 150 ---~~~~~~~Sa~~~~~i 164 (223)
+++++++|+.++.++
T Consensus 233 ~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 233 PGDDIPIISGSALLALEA 250 (478)
T ss_pred CcCcceEEEEEccccccc
Confidence 567999999988543
No 241
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.67 E-value=2.2e-15 Score=127.11 Aligned_cols=152 Identities=18% Similarity=0.126 Sum_probs=100.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCC------------------------CCC---ccceeEeEEEEEEECCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFYP------------------------NSK---STIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~------------------------~~~---~~~~~~~~~~~~~~~~~ 61 (223)
....++|+++|+.++|||||+.+|+.. .... ... ...|.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 456799999999999999999998752 1110 000 11134444455555666
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hH----HHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TF----DSIGRWLNELHTHSDMNVV-TILVGNKSDLKD 133 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~ 133 (223)
...++|+|+||+..|.......+..+|++|+|+|+.... .+ ...+.| ..+... ++| +|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~~---gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFTL---GVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHHc---CCCeEEEEEEcccccc
Confidence 778999999999999888888889999999999998742 11 111222 222222 555 678999999532
Q ss_pred --CcccC----HHHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 027417 134 --AREVT----TAEGKALAEAQ-----GLFFMETSALDSSNVTA 166 (223)
Q Consensus 134 --~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 166 (223)
..+-. .++...+.... +++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 23333444433 35799999999999864
No 242
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.1e-15 Score=126.73 Aligned_cols=161 Identities=20% Similarity=0.215 Sum_probs=118.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------ccceeEeEE--EE-EEECCEEEEEEEEeCCCch
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-------------STIGVEFQT--QK-MDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-------------~~~~~~~~~--~~-~~~~~~~~~~~l~D~~G~~ 74 (223)
.++..|+.|+-+...|||||.++|+...-..... .--|++... .. ++.++..+.++++|||||.
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 3677899999999999999999997532111100 011222222 22 2234677899999999999
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCeE
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLFF 153 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 153 (223)
.|..-....+..++++|+|+|++..-.-+.+..++..+.. +..+|.|+||+|+..++. .-..+..++......++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence 9999888889999999999999987666666665555543 677999999999987642 22334445545555679
Q ss_pred EEEccCCCCCHHHHHHHHHHHH
Q 027417 154 METSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+.+||++|.|+.+++++|++++
T Consensus 213 i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhC
Confidence 9999999999999999999877
No 243
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=1.2e-15 Score=120.64 Aligned_cols=140 Identities=18% Similarity=0.109 Sum_probs=87.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CCC---C--------CC---ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE--FYP---N--------SK---STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~--~~~---~--------~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 79 (223)
+|+|+|++++|||||+++|+... ... . +. ...+.+.......+......+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997421 100 0 00 11133333333334334577889999999888888
Q ss_pred hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCe-EEEEc
Q 027417 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLF-FMETS 157 (223)
Q Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~S 157 (223)
+...++.+|++|+|+|..+...-.. ...+..+.. .++|+++++||+|+.+.+. ...++.+.......++ .+++|
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pis 156 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIG 156 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccc
Confidence 8889999999999999987532222 222233322 2689999999999875321 1123333332222223 56666
Q ss_pred cC
Q 027417 158 AL 159 (223)
Q Consensus 158 a~ 159 (223)
+.
T Consensus 157 a~ 158 (270)
T cd01886 157 EE 158 (270)
T ss_pred cC
Confidence 65
No 244
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=6.3e-16 Score=122.73 Aligned_cols=144 Identities=22% Similarity=0.196 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC------cc----------ceeEeEEEEEEECCEEEEEEEEeCCCchhhhch
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSK------ST----------IGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 79 (223)
+|+|+|++|+|||||+++|++........ .+ .+.+.......+....+.+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532111000 00 011111122222224467889999999888778
Q ss_pred hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEE--Ec
Q 027417 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFME--TS 157 (223)
Q Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S 157 (223)
+...+..+|++++|+|.++.........|. .+. ..++|+++++||+|+.... ..+....+....+.+++. +.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence 888899999999999999865544333332 222 2368999999999987542 122333444455655433 33
Q ss_pred cCCCCCHH
Q 027417 158 ALDSSNVT 165 (223)
Q Consensus 158 a~~~~~i~ 165 (223)
..++.++.
T Consensus 155 ~~~~~~~~ 162 (268)
T cd04170 155 IGEGDDFK 162 (268)
T ss_pred ccCCCcee
Confidence 44544443
No 245
>PLN03127 Elongation factor Tu; Provisional
Probab=99.66 E-value=6.2e-15 Score=124.25 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=99.2
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcC------CCCCC--------CCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARD------EFYPN--------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
.....++|+++|++++|||||+++|.+. ..... ....-|.+.......+......+.++||||+..
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3566799999999999999999999732 10000 001124455555555655566788999999988
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHc--
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREVT---TAEGKALAEAQ-- 149 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~-- 149 (223)
|.......+..+|++++|+|..+...-+. ...+..+.. .++| +|+++||+|+.+..+.. .++..++....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 87777677778999999999986432221 222222222 2577 57889999987532211 11233333332
Q ss_pred ---CCeEEEEccC---CCCC-------HHHHHHHHH
Q 027417 150 ---GLFFMETSAL---DSSN-------VTAAFQTVV 172 (223)
Q Consensus 150 ---~~~~~~~Sa~---~~~~-------i~~~~~~l~ 172 (223)
.++++++|+. ++.| +.++++.|.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~ 248 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVD 248 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHH
Confidence 3678888875 4544 445555544
No 246
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.65 E-value=3.1e-15 Score=118.10 Aligned_cols=165 Identities=22% Similarity=0.105 Sum_probs=113.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRG 86 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ 86 (223)
.--|.++|-|++|||||++++...+......|+++.......+.+ ...-.+.+-|+||.-+ ........+..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 345789999999999999999987776666666566555555555 3334577999999322 11222334467
Q ss_pred CCEEEEEEECCCHhh---HHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeE-EEEccCC
Q 027417 87 AVGALLVYDISRRQT---FDSIGRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFF-METSALD 160 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~ 160 (223)
+.++++|+|++..+. .+.......++..+. -.++|.+||+||+|+....+........+.+..+... +.+|+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 999999999986442 444444444444332 2368999999999976544444444555555555542 2299999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~~~ 179 (223)
++|++++...+.+.+.+..
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999987776654
No 247
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.1e-14 Score=120.83 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=110.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEE--EEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQ--KMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
.++++-|-|+|+..-|||||+++|.......... .|++.... .+.++ .+-.++|.|||||..|..++..-..-+|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~--GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA--GGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhc--CCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCcccc
Confidence 3566788899999999999999998766543322 24433333 33334 3467889999999999999999999999
Q ss_pred EEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-------HcC--CeEEEE
Q 027417 89 GALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE-------AQG--LFFMET 156 (223)
Q Consensus 89 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~--~~~~~~ 156 (223)
++++|+.+++ +++.+. |......+.|+|+++||+|.++.+ .+.+..-.. .+| ++++++
T Consensus 227 IvVLVVAadDGVmpQT~Ea-------IkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQTLEA-------IKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred EEEEEEEccCCccHhHHHH-------HHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 9999999998 455443 333344589999999999987643 333333222 333 458999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVT 173 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~ 173 (223)
||++|.|++.+-+++.-
T Consensus 297 SAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILL 313 (683)
T ss_pred ecccCCChHHHHHHHHH
Confidence 99999999999998863
No 248
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=6.3e-15 Score=126.33 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=81.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc--CCCCCC-------------C--C---ccceeEeEEEEEEECCEEEEEEEEeCC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFAR--DEFYPN-------------S--K---STIGVEFQTQKMDINGKEVKAQIWDTA 71 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~--~~~~~~-------------~--~---~~~~~~~~~~~~~~~~~~~~~~l~D~~ 71 (223)
....+|+|+|++++|||||+++|+. +..... . . ...|.++......+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4578999999999999999999974 111000 0 0 011233333334444455788999999
Q ss_pred CchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
|+..+.......++.+|++|+|+|+++...- ....++..... .++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 9998888777788999999999999875322 22333333322 3689999999999753
No 249
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.64 E-value=2.9e-15 Score=115.16 Aligned_cols=160 Identities=18% Similarity=0.244 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhh-----chhHhhhcCCCE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFR-----AVTSAYYRGAVG 89 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----~~~~~~~~~~d~ 89 (223)
||+++|+.+|||||..+.+.+...+ ......+.+.......+ ....+.+.+||+||+..+. ......++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999998888865433 22222333333333333 1234578999999986543 346778999999
Q ss_pred EEEEEECCCHhhH---HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--c----CHHHHHHHHHHcC---CeEEEEc
Q 027417 90 ALLVYDISRRQTF---DSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--V----TTAEGKALAEAQG---LFFMETS 157 (223)
Q Consensus 90 ~i~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~----~~~~~~~~~~~~~---~~~~~~S 157 (223)
+|+|+|+.+.+-. ..+...+..+..+.+ +..+.+.++|+|+..+.. . ..+...+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 9999999954433 334445555555544 788999999999874311 1 1222333444545 6789999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 027417 158 ALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~~~~ 178 (223)
..+ +.+-+.+..+++.+..+
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTT
T ss_pred CcC-cHHHHHHHHHHHHHccc
Confidence 888 58888888888776543
No 250
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=9.1e-15 Score=117.88 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=54.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEE---------------------ECC-EEEEEEEEeCCCc-
Q 027417 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMD---------------------ING-KEVKAQIWDTAGQ- 73 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~l~D~~G~- 73 (223)
|+|+|.|+||||||+++|++........|..+.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765432223322222222111 122 3477999999996
Q ss_pred ---hhhhchhHh---hhcCCCEEEEEEECC
Q 027417 74 ---ERFRAVTSA---YYRGAVGALLVYDIS 97 (223)
Q Consensus 74 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 97 (223)
+.+..+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333333 589999999999997
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=4.8e-15 Score=130.51 Aligned_cols=154 Identities=21% Similarity=0.185 Sum_probs=97.3
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------C-------------------ccceeEeEEEEEEE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS------------K-------------------STIGVEFQTQKMDI 58 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~ 58 (223)
+....++|+|+|++++|||||+++|+...-.... . ...|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 3455689999999999999999999864321110 0 00122233333334
Q ss_pred CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417 59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (223)
......+.|+||||++.+.......+..+|++++|+|+.....-+..+. +..+.... ..++|+++||+|+.+..+..
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~~--~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLLG--IRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHhC--CCeEEEEEEecccccchhHH
Confidence 4445577899999998887666667889999999999976432211111 11222221 25788999999987422111
Q ss_pred H----HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 027417 139 T----AEGKALAEAQG---LFFMETSALDSSNVTA 166 (223)
Q Consensus 139 ~----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 166 (223)
. .+...+....+ ++++++||++|.|+.+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 22333344444 4599999999999985
No 252
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.64 E-value=1.2e-14 Score=110.15 Aligned_cols=158 Identities=20% Similarity=0.199 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEe--EEEEEEECCEEEEEEEEeCCCchhhhc--------h---hH
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEF--QTQKMDINGKEVKAQIWDTAGQERFRA--------V---TS 81 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~---~~ 81 (223)
++|+|+|.+|||||||+|+|++...........+.+. ........+ ..+.++||||...... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 4799999999999999999998765433321112222 222233333 5678999999543211 1 11
Q ss_pred hhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHcCCeEE
Q 027417 82 AYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV------TTAEGKALAEAQGLFFM 154 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~ 154 (223)
.....+|++|+|+++.+.. ....+-.++..+... ..-.+++++.|+.|......+ .....+.+.+.++-.++
T Consensus 79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~-~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE-KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh-HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 2236789999999998721 122222333332211 112578899999997653221 12344556666666665
Q ss_pred EEcc-----CCCCCHHHHHHHHHHHH
Q 027417 155 ETSA-----LDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 155 ~~Sa-----~~~~~i~~~~~~l~~~~ 175 (223)
..+. ..+.++.++++.|...+
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 5543 45566777777766554
No 253
>PRK13351 elongation factor G; Reviewed
Probab=99.63 E-value=5.2e-15 Score=131.55 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=83.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------CCCCc---cceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-------------PNSKS---TIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
+...+|+|+|+.|+|||||+++|+...-. ..+.+ ..+.+.......+....+.+++|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 45689999999999999999999853210 00000 011222222222333457889999999999
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
+...+..+++.+|++|+|+|.++..+......|. .+.. .++|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh---cCCCEEEEEECCCCCC
Confidence 9888899999999999999999876666555453 2322 2689999999999864
No 254
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.63 E-value=1.8e-14 Score=123.62 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=82.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhc--CCCCC------C-------C-----CccceeEeEEEEEEECCEEEEEEEEe
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFAR--DEFYP------N-------S-----KSTIGVEFQTQKMDINGKEVKAQIWD 69 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~--~~~~~------~-------~-----~~~~~~~~~~~~~~~~~~~~~~~l~D 69 (223)
......+|+|+|++++|||||+++|+. +.... . . ....|.++......++...+.+.+||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 345678999999999999999999863 21110 0 0 01113444444455555678899999
Q ss_pred CCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 70 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
|||+..+.......++.+|++|+|+|..+.-. .....++..... .+.|+++++||+|+.
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 99998887767777899999999999987421 122334443332 368999999999974
No 255
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.8e-15 Score=124.19 Aligned_cols=169 Identities=21% Similarity=0.173 Sum_probs=111.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhch--------hH
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAV--------TS 81 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~--------~~ 81 (223)
.+..++|+|+|+|+||||||+|+|.........+.. |++.+.....++-+++.+.|.||+|... .... ..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 355699999999999999999999988776544444 7777777766666678889999999655 2111 12
Q ss_pred hhhcCCCEEEEEEECCC--HhhHHHHHHHHHHHhhc------CCCCCcEEEEEeCCCCCCC-cccCHHHHHHHHHH-c-C
Q 027417 82 AYYRGAVGALLVYDISR--RQTFDSIGRWLNELHTH------SDMNVVTILVGNKSDLKDA-REVTTAEGKALAEA-Q-G 150 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~------~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~-~-~ 150 (223)
..+..+|++++|+|+.. -++-..+...+.....- ...+.|++++.||.|+... .++...-....... . .
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV 423 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence 24578999999999943 33322223333333211 1235889999999998764 22222111111111 1 1
Q ss_pred Ce-EEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417 151 LF-FMETSALDSSNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 151 ~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 180 (223)
.+ ..++|+++++|++.+.+.|...+.....
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 22 5669999999999999999876644433
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.62 E-value=2.6e-14 Score=99.17 Aligned_cols=106 Identities=24% Similarity=0.195 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh---------hchhHhhhc
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---------RAVTSAYYR 85 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~~ 85 (223)
+|+|+|.+|+|||||+++|++.... ....+..+.......+.+++..+ .++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999985432 22222222333334455566544 59999995321 111223348
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 128 (223)
.+|++++|+|.+++.. +.....++.+. .++|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999888422 22333444442 47999999998
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.61 E-value=1.2e-14 Score=122.36 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=102.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---C--cc--ceeEeEE-----------EEEEECC------------
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS---K--ST--IGVEFQT-----------QKMDING------------ 60 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~---~--~~--~~~~~~~-----------~~~~~~~------------ 60 (223)
.+..++|.++|+...|||||+.+|++....... . -| .|+.... .....+.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 466799999999999999999999974321111 0 01 1111100 0000000
Q ss_pred ----EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 61 ----KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 61 ----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
....+.|+|+||++.|.......+..+|++++|+|+.++. .-+..+. +..+... . -.++|+++||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~i~~~l-g-i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LAAVEIM-K-LKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HHHHHHc-C-CCcEEEEEecccccCHH
Confidence 0236789999999999888888888999999999998742 1122222 2222211 1 24688999999987532
Q ss_pred cc--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 136 EV--TTAEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 136 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
.. ..++..++... .+.+++++||++|.|++++++.|...
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 21 12333333322 35789999999999999999888753
No 258
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1e-14 Score=117.86 Aligned_cols=190 Identities=21% Similarity=0.155 Sum_probs=125.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------C------------CCccceeEeEEEEEEECCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDE--FYP---------------N------------SKSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~--~~~---------------~------------~~~~~~~~~~~~~~~~~~~ 61 (223)
....++++++|+..+|||||+-+|+... ++. . ...--|.+.......+.-.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3567999999999999999999987631 100 0 0011255666667777777
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TF--DSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
.+.++++|+||+..|-.........+|+.|+|+|+++.+ +| +...+....+.+... -..+|+++||+|..+.++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence 788999999999999888888889999999999999863 12 111122222222222 355788899999987544
Q ss_pred cCHHHHH----HHHHHcC-----CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecC
Q 027417 137 VTTAEGK----ALAEAQG-----LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEG 206 (223)
Q Consensus 137 ~~~~~~~----~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (223)
-.+++.. .+.+..+ ++|+++|+..|.|+.+.- ....++.-+-..+....-.....+.++|+++-.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-----~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI 236 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-----ENMPWYKGPTLLEALDQLEPPERPLDKPLRLPI 236 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC-----cCCcCccCChHHHHHhccCCCCCCCCCCeEeEe
Confidence 4444432 2333333 569999999999987655 244555555555555544555555666666543
No 259
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=7.7e-15 Score=112.83 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=106.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAY 83 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~ 83 (223)
....++|+++|..|+|||||||+|++++..+...-..+.+.....+..- ..-.+.|||+||... +......+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 3567999999999999999999999876654433222333222222111 224678999999544 66677788
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC--------cccCHH-------HHHHHHHH
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA--------REVTTA-------EGKALAEA 148 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--------~~~~~~-------~~~~~~~~ 148 (223)
+...|.++++++..++.---....| +.+....- +.++++++|.+|..+. ...+.+ .+....+.
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~-~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFL-RDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHH-HHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999997532222233 33322221 4899999999997643 111111 11111111
Q ss_pred c--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 149 Q--GLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 149 ~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
. --|++.++...++|++.+...++..+.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 235788889999999999999987664
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=6.6e-14 Score=124.37 Aligned_cols=119 Identities=18% Similarity=0.109 Sum_probs=79.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCC-----------ccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-----NSK-----------STIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.+...+|+|+|++++|||||+++|+...-.. ... ...|.+.......+......+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3457899999999999999999997521100 000 011233333223332344678899999998
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
.+...+...++.+|++|+|+|+.+...-.... .+..+.. .+.|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 88888888899999999999998754333222 2222222 2589999999999864
No 261
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.58 E-value=9.3e-14 Score=108.94 Aligned_cols=163 Identities=18% Similarity=0.328 Sum_probs=118.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE--CCEEEEEEEEeCCCchhhhchhHhhhcC----
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI--NGKEVKAQIWDTAGQERFRAVTSAYYRG---- 86 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~---- 86 (223)
..-+|+|+|+.|+||||||.+|-+.+ .+.+..|..+-+..+.- .+...++.+|-.-|.-....+....+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34689999999999999999998854 33333455554444433 2344567799888866666666655543
Q ss_pred CCEEEEEEECCCHhh-HHHHHHHHHHHhhcCC------------------------------------------------
Q 027417 87 AVGALLVYDISRRQT-FDSIGRWLNELHTHSD------------------------------------------------ 117 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------ 117 (223)
-.++|++.|+++|++ ++++..|...+.++.+
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 246899999999965 7788888877654211
Q ss_pred -------------CCCcEEEEEeCCCCC----CCcccC-------HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 118 -------------MNVVTILVGNKSDLK----DAREVT-------TAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 118 -------------~~~p~ivv~nK~Dl~----~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
.++|++||.||+|.. .+.+.. ....+.||.++|+.++.+|+++..|++.+...|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 168899999999973 222222 23467889999999999999999999999999999
Q ss_pred HHHHH
Q 027417 174 EIYNI 178 (223)
Q Consensus 174 ~~~~~ 178 (223)
++|..
T Consensus 288 r~yG~ 292 (473)
T KOG3905|consen 288 RSYGF 292 (473)
T ss_pred HhcCc
Confidence 88653
No 262
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=7.3e-14 Score=114.43 Aligned_cols=160 Identities=22% Similarity=0.226 Sum_probs=116.8
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCccceeEeEEE--EEEE-CCEEEEEEEEeCC
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEF---------------YPNSKSTIGVEFQTQ--KMDI-NGKEVKAQIWDTA 71 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~---------------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~D~~ 71 (223)
+.....|..|+-+-..|||||.++|+...- +.+....++..-... .+.. +++.+.++|+|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 345567889999999999999999975311 111111111211222 2222 5588999999999
Q ss_pred CchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027417 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL 151 (223)
Q Consensus 72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (223)
||-.|.--....+..|.+.++++|++..-.-+.+.+.|..+.. +.-+|-|.||+|++.++. ..-.+++-.-.|+
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGi 158 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGI 158 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCC
Confidence 9998877777778899999999999998777777777777654 566899999999986532 2223344445666
Q ss_pred e---EEEEccCCCCCHHHHHHHHHHHH
Q 027417 152 F---FMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 152 ~---~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+ .+.+||++|.||++++++|++++
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhC
Confidence 5 78999999999999999999876
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.57 E-value=3.9e-14 Score=125.87 Aligned_cols=120 Identities=19% Similarity=0.142 Sum_probs=82.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCC-----------ccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-----NSK-----------STIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.+...+|+|+|++++|||||+++|+...-.. ... ...|++.......+......+.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 4457899999999999999999997421110 000 011333333333333345788999999998
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
.+.......++.+|++|+|+|+.+....+...-| ..+.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCCC
Confidence 8877788889999999999999886544433333 23322 26899999999998864
No 264
>PRK09866 hypothetical protein; Provisional
Probab=99.55 E-value=5.8e-13 Score=113.87 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=71.4
Q ss_pred EEEEEeCCCchhh-----hchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417 64 KAQIWDTAGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 64 ~~~l~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (223)
.+.|+||||.... .......+..+|++++|+|.....+... ....+.+.... ...|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence 4679999996442 2234457899999999999987533332 22333343322 135999999999986432222
Q ss_pred HHHHHHHHH----HcCC---eEEEEccCCCCCHHHHHHHHHH
Q 027417 139 TAEGKALAE----AQGL---FFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 139 ~~~~~~~~~----~~~~---~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
.+....+.. .... .+|++||++|.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 444444422 2222 4999999999999999999875
No 265
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.55 E-value=5.4e-14 Score=95.29 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=97.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----chhhhchhHhhhcCCCEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i 91 (223)
|++++|..|+|||||.+.|.+.... +..|-. +.++... .+|||| +..+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7899999999999999999885432 222211 2222222 679999 3444444555667899999
Q ss_pred EEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027417 92 LVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169 (223)
Q Consensus 92 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~ 169 (223)
+|-.++++++ |.. .+... ...|+|-|++|.|+.+. ...+..+.+..+-|.. +|++|+.++.|+++++.
T Consensus 70 ~v~~and~~s~f~p------~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 70 YVHAANDPESRFPP------GFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eeecccCccccCCc------ccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 9999999876 221 11111 24669999999999963 3456777788888875 99999999999999999
Q ss_pred HHHH
Q 027417 170 TVVT 173 (223)
Q Consensus 170 ~l~~ 173 (223)
.|..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8864
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.55 E-value=2.8e-13 Score=120.39 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=79.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhc--CCCCC---CCC-----------ccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFAR--DEFYP---NSK-----------STIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~--~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.+...+|+|+|++++|||||+++|+. +.... ... ...|.+.......+......+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 45578999999999999999999974 11100 000 111233333333333334678899999998
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
.+.......+..+|++|+|+|+...-.-+...-|. .+.. .+.|+++++||+|+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCCCC
Confidence 87776777789999999999988764444333332 2222 2688999999999864
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.54 E-value=3.5e-13 Score=111.89 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=56.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI---------------------N-GKEVKAQIWDTAG 72 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~D~~G 72 (223)
++|+|+|.|+||||||+++|++........+..+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987665433333233333322221 1 1346789999999
Q ss_pred ch----hhhchhHh---hhcCCCEEEEEEECC
Q 027417 73 QE----RFRAVTSA---YYRGAVGALLVYDIS 97 (223)
Q Consensus 73 ~~----~~~~~~~~---~~~~~d~~i~v~d~~ 97 (223)
.. ....+... .++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 22223333 378999999999996
No 268
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=6.1e-14 Score=99.56 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=111.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+..=|++++|-.++|||||++.|..+... ...||.-.+... ..+ .+.+++-+|.+|+..-+..|..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~--l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEE--LSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHH--hee--cCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 34568999999999999999999876543 233332222222 222 4478889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH---HHHcC-----------C---eE
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL---AEAQG-----------L---FF 153 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~-----------~---~~ 153 (223)
+.+|+.+.+.|.+.+..+..+... .-...|+++.+||+|...+- +.++.+.. ....+ + .+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 999999999998887777665433 23469999999999988642 34443322 11111 1 26
Q ss_pred EEEccCCCCCHHHHHHHHHH
Q 027417 154 METSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|.||...+.+-.+.|.|+.+
T Consensus 171 fmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEccCccceeeeehhh
Confidence 77898888887777777643
No 269
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.52 E-value=4.9e-14 Score=125.57 Aligned_cols=126 Identities=18% Similarity=0.142 Sum_probs=85.4
Q ss_pred cccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCC---------------CCCC---CCccceeEeEEEEEEECCEEEEE
Q 027417 4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDE---------------FYPN---SKSTIGVEFQTQKMDINGKEVKA 65 (223)
Q Consensus 4 ~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 65 (223)
..+.....+...||+|+|+.++|||||+++|+... +.+. +..|.........+.+++..+.+
T Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i 88 (720)
T TIGR00490 9 IKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLI 88 (720)
T ss_pred HHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEE
Confidence 33344445667999999999999999999997521 1110 11122222222233456677899
Q ss_pred EEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 66 QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 66 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
.+|||||+..+.......++.+|++|+|+|+......+....|.. +. ..+.|+++++||+|...
T Consensus 89 ~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 89 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred EEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcCCCEEEEEEChhccc
Confidence 999999999888888888999999999999987533333222322 11 22578889999999864
No 270
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.51 E-value=4.2e-14 Score=104.38 Aligned_cols=117 Identities=23% Similarity=0.319 Sum_probs=70.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhhchhHhh---hcCCCE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAY---YRGAVG 89 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~---~~~~d~ 89 (223)
...|+|+|+.|||||+|...|..+......... .. .. ...+ ......+.++|+|||.+.+...... ...+-+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~--n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-EN--NI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SE--EE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cC--Cc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 357999999999999999999998543322211 11 11 1112 2233467799999999877654443 788999
Q ss_pred EEEEEECCC-HhhHHHHHH-HHHHHh--hcCCCCCcEEEEEeCCCCCCC
Q 027417 90 ALLVYDISR-RQTFDSIGR-WLNELH--THSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 90 ~i~v~d~~~-~~s~~~~~~-~~~~i~--~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
+|||+|.+. +..+..+.. ++..+. ......+|++|++||.|+..+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999985 334444433 333332 223457999999999998753
No 271
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=2.8e-13 Score=111.67 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=127.7
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhchhHh--
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTSA-- 82 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~-- 82 (223)
..++....++|+|.|++|||||++.++.......+.++++...... .++-....++++||||.-. ..++.++
T Consensus 163 sIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 163 AIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 4456678899999999999999999998777766666644333333 3344567788999999321 1112211
Q ss_pred ---hhcCCCEEEEEEECCC--HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH---HHHHHHHcCCeEE
Q 027417 83 ---YYRGAVGALLVYDISR--RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE---GKALAEAQGLFFM 154 (223)
Q Consensus 83 ---~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~ 154 (223)
...--.+|+++.|++. ..|...-..++..+..... +.|+|+|+||+|......++.+. ...+...-+++++
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~ 319 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVV 319 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEE
Confidence 1122346788999987 4566776777878776655 69999999999998766555443 3333444458899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 027417 155 ETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELK 190 (223)
Q Consensus 155 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 190 (223)
++|..+.+|+-++....+.+++..+....+......
T Consensus 320 ~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~ 355 (620)
T KOG1490|consen 320 QTSCVQEEGVMDVRTTACEALLAARVEQKLKSESRV 355 (620)
T ss_pred EecccchhceeeHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999998887776554333
No 272
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.49 E-value=1.5e-12 Score=118.22 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=91.9
Q ss_pred CHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-E---------------EEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 26 GKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-K---------------EVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 26 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+||||+++|.+........-.++.......+..+. . .-.+.||||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 49999999998776543332222222222222221 0 0127899999999998888888889999
Q ss_pred EEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------------HHHH-HH-------H-
Q 027417 90 ALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT------------TAEG-KA-------L- 145 (223)
Q Consensus 90 ~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~~~-~~-------~- 145 (223)
+++|+|+++ +.+++.+.. +.. .+.|+++|+||+|+....... .+.+ .+ +
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~~----lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAINI----LRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHHH----HHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 555554432 222 258999999999986321100 0100 00 0
Q ss_pred --HHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 146 --AEA---------------QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 146 --~~~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
... -.++++++||++|+|++++++.|....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 011 135799999999999999998776433
No 273
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.49 E-value=9.7e-13 Score=110.25 Aligned_cols=163 Identities=19% Similarity=0.296 Sum_probs=124.4
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
.++.....+++.++|+.++|||.|++.++++.+......+....+....+.+.+....+.+-|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 4455677899999999999999999999999888766566566666666667777777888888753 222222222 78
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLF-FMETSALDSSNV 164 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 164 (223)
+|+++++||.+++.+|+.+...++.-... .+.|+++|++|+|+.+..+ ..... .+++.+++++ ...+|.+....
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-
Confidence 99999999999999999988776665443 4799999999999987643 33334 8899999987 67778775333
Q ss_pred HHHHHHHHHHH
Q 027417 165 TAAFQTVVTEI 175 (223)
Q Consensus 165 ~~~~~~l~~~~ 175 (223)
.++|..|+.++
T Consensus 572 ~~lf~kL~~~A 582 (625)
T KOG1707|consen 572 NELFIKLATMA 582 (625)
T ss_pred chHHHHHHHhh
Confidence 88998887655
No 274
>PRK12740 elongation factor G; Reviewed
Probab=99.48 E-value=9.7e-13 Score=116.91 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=73.9
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCC----C------------ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhh
Q 027417 20 IGDSAVGKSNLLARFARDEFYPNS----K------------STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY 83 (223)
Q Consensus 20 ~G~~~sGKStli~~l~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 83 (223)
+|++++|||||+++|+...-.... . ...|.+.......+....+.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999643111000 0 001222222222233344788999999998887778888
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
+..+|++|+|+|.+..........|. .+.. .+.|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---cCCCEEEEEECCCCCC
Confidence 89999999999999876555443332 2222 2689999999999764
No 275
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.48 E-value=1e-12 Score=110.57 Aligned_cols=165 Identities=18% Similarity=0.348 Sum_probs=117.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC--CEEEEEEEEeCCCchhhhchhHhhhcC---
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN--GKEVKAQIWDTAGQERFRAVTSAYYRG--- 86 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~--- 86 (223)
...-.|+|+|..++|||||+.+|.+.. .+.++.+.+|....+.-. +...++.+|...|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345789999999999999999987643 344555666655554332 234568999998866666666655543
Q ss_pred -CCEEEEEEECCCHhh-HHHHHHHHHHHhhcC------------------------------------------------
Q 027417 87 -AVGALLVYDISRRQT-FDSIGRWLNELHTHS------------------------------------------------ 116 (223)
Q Consensus 87 -~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~------------------------------------------------ 116 (223)
--++|+|+|.+.|+. ++.+..|+..+..+.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 346899999999976 456666655443200
Q ss_pred --------------CCCCcEEEEEeCCCCCC----Ccc-------cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 117 --------------DMNVVTILVGNKSDLKD----ARE-------VTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 117 --------------~~~~p~ivv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+.++|++||++|+|... ... .-.+-.+.+|..+|+.+|.+|++...+++.++..|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 01479999999999642 111 11233677889999999999999999999999999
Q ss_pred HHHHHHHH
Q 027417 172 VTEIYNIL 179 (223)
Q Consensus 172 ~~~~~~~~ 179 (223)
.++++..-
T Consensus 260 ~h~l~~~~ 267 (472)
T PF05783_consen 260 LHRLYGFP 267 (472)
T ss_pred HHHhccCC
Confidence 98886543
No 276
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=9.4e-13 Score=102.91 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=72.1
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh--c-h-----
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--A-V----- 79 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~-~----- 79 (223)
+.....++|+|+|.+|||||||+|+|++........ ...+..........++ ..+.+|||||..... . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 455678999999999999999999999876543222 1112222222233333 678899999955331 0 1
Q ss_pred --hHhhh--cCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCC--CCcEEEEEeCCCCCC
Q 027417 80 --TSAYY--RGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDM--NVVTILVGNKSDLKD 133 (223)
Q Consensus 80 --~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~ 133 (223)
...++ ...|++++|..++... .... ...++.+...... -.++++|.||+|...
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 11222 2678888887666431 2221 1222333222111 257999999999764
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=1.2e-12 Score=104.10 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=72.3
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-------h
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-------T 80 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~ 80 (223)
+.....++|+|+|.+|+||||++|+|++........ .+.+.+......... +..+.+|||||....... .
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHH
Confidence 334667999999999999999999999876532211 222222222222233 467889999996543221 1
Q ss_pred Hhhh--cCCCEEEEEEECCCH--hhH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 81 SAYY--RGAVGALLVYDISRR--QTF-DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 81 ~~~~--~~~d~~i~v~d~~~~--~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
..++ ...|++|+|..++.. ... ..+-..+..+.... .-.++|++.|+.|....+
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~-iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD-IWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh-hhccEEEEEECCccCCCC
Confidence 1111 269999999665532 111 11222222222111 125789999999976433
No 278
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1e-12 Score=104.25 Aligned_cols=153 Identities=24% Similarity=0.221 Sum_probs=107.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC----------CC---------------------CccceeEeEEEEEEEC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP----------NS---------------------KSTIGVEFQTQKMDIN 59 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~----------~~---------------------~~~~~~~~~~~~~~~~ 59 (223)
....++++-+|...=||||||-+|+.+.... .+ ..--|+++.....++.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567999999999999999999998742110 00 0111456666667777
Q ss_pred CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 027417 60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT 139 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 139 (223)
-...+|.+.|||||+.|.+.+-.-...||+.|+++|+...-.-+. .-...+..... -.++|+++||+||.+-.+-.+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QT--rRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQT--RRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHh--HHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 777889999999999999988888889999999999965322111 11222222222 266888899999986443333
Q ss_pred H----HHHHHHHHcCCe---EEEEccCCCCCHHH
Q 027417 140 A----EGKALAEAQGLF---FMETSALDSSNVTA 166 (223)
Q Consensus 140 ~----~~~~~~~~~~~~---~~~~Sa~~~~~i~~ 166 (223)
+ +-..|+..+++. ++++||..|.|+-.
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3 344577888764 89999999999754
No 279
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.47 E-value=4.1e-13 Score=93.90 Aligned_cols=114 Identities=32% Similarity=0.373 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
+||+++|+.|+|||+|+.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997766643333 3322 222334456788999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
|+.++..+++.+ |...+....+...|.++++||.|+.+...+..++.. .++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999998876 877776655567889999999998543344333332 35677889999884
No 280
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=6.9e-13 Score=98.23 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=100.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc---CCCEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR---GAVGA 90 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~~ 90 (223)
.-.|+++|+.+||||+|.-.|..+....... ..+.....+.+... ..+++|.|||.+.+.-...+++ .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 3679999999999999999998874433222 22222333333322 2679999999998887777776 78899
Q ss_pred EEEEECCC--HhhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcc------------------------------
Q 027417 91 LLVYDISR--RQTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKDARE------------------------------ 136 (223)
Q Consensus 91 i~v~d~~~--~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~~------------------------------ 136 (223)
|||+|... ++-.+-.+..+..+... ...++|++++.||.|+.-+..
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999765 22233334444444433 355788999999999753210
Q ss_pred ----cCHHHHHHH--HH--HcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 137 ----VTTAEGKAL--AE--AQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 137 ----~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
....++.+| +. ...+.|.++|++++ +++++-+||.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 011111111 11 12345788999998 899999998764
No 281
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=5.7e-13 Score=114.12 Aligned_cols=170 Identities=22% Similarity=0.196 Sum_probs=115.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEE--------EECC----EEEEEEEEeCCCchhh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKM--------DING----KEVKAQIWDTAGQERF 76 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~--------~~~~----~~~~~~l~D~~G~~~~ 76 (223)
+.+-|||+|+..+|||-|+..+.+.++..... +.+|.++....- .-++ .---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45679999999999999999999876654333 223333333220 0000 1113679999999999
Q ss_pred hchhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------c-------cCHH
Q 027417 77 RAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR------E-------VTTA 140 (223)
Q Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------~-------~~~~ 140 (223)
..++......||+.|+|+|+.+ +.+++++ +.+ ...+.|+||++||+|..-.. . ....
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lL---R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLL---RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH----HHH---HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9999999999999999999987 4444442 222 23378999999999964210 0 0000
Q ss_pred H-----------HHHHHH-HcC-------------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 027417 141 E-----------GKALAE-AQG-------------LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQEL 189 (223)
Q Consensus 141 ~-----------~~~~~~-~~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 189 (223)
- +.+|+. .++ +.++++||.+|+||-+++-+|++..-..|..++.....+
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev 700 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEV 700 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 0 111211 111 236789999999999999999999999998888655443
No 282
>PTZ00258 GTP-binding protein; Provisional
Probab=99.44 E-value=3.6e-12 Score=104.95 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=61.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER 75 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~ 75 (223)
....++|+|+|.|+||||||+++|++........|.++.+.....+.+.+. ..++.++|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 355689999999999999999999887665544455455555555544432 23588999999432
Q ss_pred -------hhchhHhhhcCCCEEEEEEECC
Q 027417 76 -------FRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 76 -------~~~~~~~~~~~~d~~i~v~d~~ 97 (223)
........++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1222334568899999999973
No 283
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.43 E-value=9.2e-12 Score=100.98 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=83.2
Q ss_pred EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH----------hhHHHHHHHHHHHh-hcCCCCCcEEEEEeCC
Q 027417 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNELH-THSDMNVVTILVGNKS 129 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~-~~~~~~~p~ivv~nK~ 129 (223)
..+.+.+||++|+...+..|.+++.+++++|+|+|+++. ..+......+..+- ...-.+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 346788999999999999999999999999999999873 23333333333332 2233479999999999
Q ss_pred CCCCC----------------cccCHHHHHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417 130 DLKDA----------------REVTTAEGKALAEA----------QGLFFMETSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 130 Dl~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
|+.++ .....+.+..+... ..+....++|.+..+++.+|+.+...+...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 96321 12234454444321 123456789999999999999998877654
No 284
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.43 E-value=2.6e-12 Score=98.51 Aligned_cols=160 Identities=20% Similarity=0.235 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh----c----hh---H
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK--STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR----A----VT---S 81 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~----~~---~ 81 (223)
++|+|+|..||||||++|.+++........ ...+.........+.+ ..+.++||||..... . +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987655432 1222233344445666 556799999932211 1 11 1
Q ss_pred hhhcCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHcCCe
Q 027417 82 AYYRGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT-------TAEGKALAEAQGLF 152 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~ 152 (223)
....+.+++|+|+.+... +-. ..-.++..+....- -..++||.|..|......+. ....+.+.+.++-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 123579999999999842 211 12233333322211 25688888988866543311 12245566777877
Q ss_pred EEEEccC------CCCCHHHHHHHHHHHHHHH
Q 027417 153 FMETSAL------DSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 153 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~ 178 (223)
|...+.+ ....+.++++.+-..+.+.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 8777666 2244566666655444433
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.41 E-value=3.6e-12 Score=114.02 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=81.8
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----------c---cceeEeE----EEEEEECCEEEEEEEE
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-----------S---TIGVEFQ----TQKMDINGKEVKAQIW 68 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-----------~---~~~~~~~----~~~~~~~~~~~~~~l~ 68 (223)
.....+...+|+|+|+.++|||||+.+|+...-..... + .-+.+.. ...+...+..+.+.|+
T Consensus 13 ~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~li 92 (731)
T PRK07560 13 LMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLI 92 (731)
T ss_pred HhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEE
Confidence 33445677899999999999999999997532111000 0 0011111 1122234456788999
Q ss_pred eCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 69 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
||||+..+.......++.+|++|+|+|....-..+...-|..... . +.|+|+++||+|+..
T Consensus 93 DtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~-~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 93 DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR-E---RVKPVLFINKVDRLI 153 (731)
T ss_pred cCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH-c---CCCeEEEEECchhhc
Confidence 999999988888888899999999999987543333333332222 1 467899999999763
No 286
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.40 E-value=5.3e-12 Score=95.69 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=63.8
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG 142 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 142 (223)
....++++.|..-...... . -+|.+|.|+|+.+.++... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4456778887322111111 1 2678999999998665321 111121 122389999999985322233443
Q ss_pred HHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 143 KALAEA--QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 143 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
.+..+. .+.+++++||++|+|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444443 457799999999999999999998654
No 287
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.40 E-value=1.6e-12 Score=101.58 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=78.9
Q ss_pred hhhhchhHhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027417 74 ERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF 152 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (223)
+++..+...+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+.+.+.+..+.+..+ ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 667777778899999999999999887 89999999987653 3699999999999976444444444444 357889
Q ss_pred EEEEccCCCCCHHHHHHHHHH
Q 027417 153 FMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 153 ~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998864
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.39 E-value=1.4e-12 Score=117.98 Aligned_cols=122 Identities=19% Similarity=0.186 Sum_probs=83.6
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------Cc---cceeEeE--EEEEEE------------
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-----------KS---TIGVEFQ--TQKMDI------------ 58 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-----------~~---~~~~~~~--~~~~~~------------ 58 (223)
.....+...+|+|+|+.++|||||+++|+...-.... .+ ..|.+.. .....+
T Consensus 12 ~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (843)
T PLN00116 12 IMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKG 91 (843)
T ss_pred HhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccc
Confidence 3445667889999999999999999999854311000 00 0011111 111111
Q ss_pred --CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 59 --NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 59 --~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
.+..+.++++||||+..|.......++.+|++|+|+|+...-......-|.... ..++|+|+++||+|+.
T Consensus 92 ~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 92 ERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
T ss_pred ccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH----HCCCCEEEEEECCccc
Confidence 123577899999999999888888899999999999999865444433343322 2368999999999986
No 289
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.36 E-value=3.2e-11 Score=98.61 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=81.9
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH----------hhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNELHT-HSDMNVVTILVGNKSD 130 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D 130 (223)
.+.+.+||++|+...+..|.+++.+++++|+|+|+++. ..+......+..+-. ..-.+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35678999999999999999999999999999999973 234443344444432 2334799999999999
Q ss_pred CCCC---------------cccCHHHHHHHHH-----Hc------CCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417 131 LKDA---------------REVTTAEGKALAE-----AQ------GLFFMETSALDSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 131 l~~~---------------~~~~~~~~~~~~~-----~~------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 179 (223)
+... ...+.+.+..+.. .. .+..+.++|.+-.++..+|+.+...+.+..
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 6431 0123334443321 11 234567889999999999999887776543
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=99.36 E-value=3.1e-12 Score=115.63 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=80.2
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc--------------cceeEeE--EEEEEEC--------CEEEE
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKS--------------TIGVEFQ--TQKMDIN--------GKEVK 64 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~--------------~~~~~~~--~~~~~~~--------~~~~~ 64 (223)
+..+...+|+|+|+.++|||||+++|+...-...... .-|.+.. .....+. +..+.
T Consensus 14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (836)
T PTZ00416 14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFL 93 (836)
T ss_pred hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceE
Confidence 3356678999999999999999999986321100000 0011111 1112222 22567
Q ss_pred EEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
+.|+||||+..+.......++.+|++|+|+|+...-.-....-| ..+.. .+.|+|+++||+|+.
T Consensus 94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 89999999999888888888999999999999885443333333 23222 258999999999986
No 291
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=8.3e-12 Score=104.76 Aligned_cols=203 Identities=22% Similarity=0.145 Sum_probs=129.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CCCccceeEeEEEEEEECCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-----------------------------NSKSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (223)
....++++++|+..+|||||+.+|+...-.. ....--|++.......++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3467999999999999999999987621100 00112256677777777777
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hHHHHH--HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TFDSIG--RWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~--~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
...++|+|+||+..|......-...+|+.|+|+|.+..+ +|+... +....+.+... -..+||++||+|+.+..+
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccH
Confidence 788999999999999998988889999999999998632 233211 11222222222 356788899999988665
Q ss_pred cCHHHHH----HHH-HHcC-----CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecC
Q 027417 137 VTTAEGK----ALA-EAQG-----LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEG 206 (223)
Q Consensus 137 ~~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (223)
-..+++. .|. +..| +.|++||+.+|+|+-..-.. ..+.+++.-+-......+-.....+-.+|++.-.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~--~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltI 410 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQE--NELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTI 410 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccc--hhhhhhhcCChHHHHHhhccCCCCcccCCeEEEh
Confidence 5555543 333 3444 45999999999997654211 1345555555444443433333333555666555
Q ss_pred CCcccccCCC
Q 027417 207 EKKEADAEPK 216 (223)
Q Consensus 207 ~~~~~~~~~~ 216 (223)
..-....+.+
T Consensus 411 sdi~~~~~~~ 420 (603)
T KOG0458|consen 411 SDIYPLPSSG 420 (603)
T ss_pred hheeecCCCe
Confidence 4444433333
No 292
>PRK13768 GTPase; Provisional
Probab=99.35 E-value=7.4e-12 Score=98.39 Aligned_cols=109 Identities=18% Similarity=0.145 Sum_probs=68.4
Q ss_pred EEEEEeCCCchhh---hchhHhhh---cC--CCEEEEEEECCCHhhHHHH--HHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 64 KAQIWDTAGQERF---RAVTSAYY---RG--AVGALLVYDISRRQTFDSI--GRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 64 ~~~l~D~~G~~~~---~~~~~~~~---~~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
.+.+||+||+.+. ...+..+. .. ++++++++|.......... ..|+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5779999997653 22332222 22 8999999999764432222 2222222211 23699999999999875
Q ss_pred CcccCHHHHHH----------------------------HHHHcC--CeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 134 AREVTTAEGKA----------------------------LAEAQG--LFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 134 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..+. ++... .....+ .+++++|++++.|+++++++|.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 4322 11111 112223 4689999999999999999997665
No 293
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.34 E-value=4.9e-11 Score=97.25 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEE---------------EEEEEEeCCCchh----
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE---------------VKAQIWDTAGQER---- 75 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~---- 75 (223)
++|+|+|.|+||||||+++|++........|.++.+.....+.+.+.. ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999877544444444445555555554421 3588999999432
Q ss_pred ---hhchhHhhhcCCCEEEEEEECC
Q 027417 76 ---FRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 76 ---~~~~~~~~~~~~d~~i~v~d~~ 97 (223)
........++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122333468999999999984
No 294
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.33 E-value=2.5e-11 Score=92.75 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=85.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-C-----------CCCc----cceeEeEEEE---E-------------EE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFY-P-----------NSKS----TIGVEFQTQK---M-------------DI 58 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~-~-----------~~~~----~~~~~~~~~~---~-------------~~ 58 (223)
......|+|+|+.|+|||||++++...... . ..+. ..+....... . ..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 345788999999999999999998753110 0 0000 0000000000 0 00
Q ss_pred CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417 59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (223)
......+.++|+.|.-.. ...+....+..+.++|+.+.+.... .. ... ...|.++++||+|+.......
T Consensus 99 ~~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~--~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL--KY-PGM-----FKEADLIVINKADLAEAVGFD 167 (207)
T ss_pred ccCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh--hh-HhH-----HhhCCEEEEEHHHccccchhh
Confidence 001235567777772110 0111123455567777775432111 00 011 146789999999997533223
Q ss_pred HHHHHHHHHHcC--CeEEEEccCCCCCHHHHHHHHHHH
Q 027417 139 TAEGKALAEAQG--LFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 139 ~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
.++.....+..+ ++++++||+++.|++++++++.+.
T Consensus 168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344444444443 789999999999999999999764
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.32 E-value=4.6e-11 Score=96.69 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=66.5
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CH
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TT 139 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~ 139 (223)
++.+.|+||+|....... ....+|.++++.+...++.+.... ..+. ...-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHHH
Confidence 467889999996533222 456799999997755554444332 1121 2234899999998753211 11
Q ss_pred HHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 140 AEGKALAEA-------QGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 140 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
.+....... +..+++.+||+++.|++++++.|.+.+-
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222222221 2257999999999999999999987654
No 296
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.30 E-value=1.7e-10 Score=87.93 Aligned_cols=106 Identities=22% Similarity=0.191 Sum_probs=76.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRG 86 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ 86 (223)
--+|+++|-|++|||||+..++..........+++.+..+..+.+++ ..+++.|.||.-. ..+...+..+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 47899999999999999999987665555555556666677777776 5567999999433 23344556789
Q ss_pred CCEEEEEEECCCHhhH-HHHHHHHHHHhhcCCCCCc
Q 027417 87 AVGALLVYDISRRQTF-DSIGRWLNELHTHSDMNVV 121 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p 121 (223)
+|.+++|+|++..+.- +-+++.++.+.-+.+..+|
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~P 175 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKP 175 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCC
Confidence 9999999999986653 3456777776554443333
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.30 E-value=8e-11 Score=96.28 Aligned_cols=163 Identities=18% Similarity=0.229 Sum_probs=98.3
Q ss_pred cccccccCCeeeEEEEEcCCCCCHHHHHHHHhcC----CCCC----------CCCccce---eEeEEEE-------EEE-
Q 027417 4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARD----EFYP----------NSKSTIG---VEFQTQK-------MDI- 58 (223)
Q Consensus 4 ~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~----~~~~----------~~~~~~~---~~~~~~~-------~~~- 58 (223)
|.+-..+....+-|.|+|+.++|||||+++|.+. +... -.....| ++..++. +..
T Consensus 7 ykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~ 86 (492)
T TIGR02836 7 YKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ 86 (492)
T ss_pred HHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc
Confidence 3444556677899999999999999999999987 3320 1111122 2222222 211
Q ss_pred CCEEEEEEEEeCCCchhh--------hc---------------------hhHhhhc-CCCEEEEEE-ECC----CHhhH-
Q 027417 59 NGKEVKAQIWDTAGQERF--------RA---------------------VTSAYYR-GAVGALLVY-DIS----RRQTF- 102 (223)
Q Consensus 59 ~~~~~~~~l~D~~G~~~~--------~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~- 102 (223)
++....+.++||+|...- .. -+...+. ++|+.|+|. |.+ .++.+
T Consensus 87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~ 166 (492)
T TIGR02836 87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV 166 (492)
T ss_pred CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence 344567889999992211 11 0223444 899999988 764 11222
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC--CCCCHHHHHHHH
Q 027417 103 DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL--DSSNVTAAFQTV 171 (223)
Q Consensus 103 ~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l 171 (223)
+.-..|+..+... ++|+++++|+.|..... ..+.+..+..+++++++.+|+. +...|..+++.+
T Consensus 167 ~aEe~~i~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 167 EAEERVIEELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHHHHHHHHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 2235566666554 79999999999943211 4455556667788887776653 445555555543
No 298
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.29 E-value=1e-10 Score=96.00 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=108.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCC----------C--ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARD--EFYPNS----------K--STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA 78 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~--~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 78 (223)
...+|+|+-+...|||||++.|+.. .+.... + .--|.++-.+.--+..+.+.+.++|||||..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 4578999999999999999999753 121110 0 1124444444444455668899999999999999
Q ss_pred hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcC
Q 027417 79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAE-------AQG 150 (223)
Q Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~ 150 (223)
-.+..+.-.|++++++|+.+.- +..-+.- +.+....+.+.|+|+||+|...++. .-.+++.++.. +++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 9999999999999999998731 1111111 2222333678899999999987653 23445555544 445
Q ss_pred CeEEEEccCCC----------CCHHHHHHHHHHHH
Q 027417 151 LFFMETSALDS----------SNVTAAFQTVVTEI 175 (223)
Q Consensus 151 ~~~~~~Sa~~~----------~~i~~~~~~l~~~~ 175 (223)
.|++..|+..| .++..+|+.|++++
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 67888888755 35777888877665
No 299
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=9.7e-11 Score=92.92 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=96.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCccc-eeEeEE--EEEE-------ECCEEEEEEEEeCCCchhhh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDE----FYPNSKSTI-GVEFQT--QKMD-------INGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~----~~~~~~~~~-~~~~~~--~~~~-------~~~~~~~~~l~D~~G~~~~~ 77 (223)
+..+++.|+|+..||||||.++|.... ++.....+. |.+.+. ..+. -.++...++++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 445999999999999999999997532 222211111 111111 1111 14566789999999998877
Q ss_pred chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC-cccC--HHHHHHHHHHc-----
Q 027417 78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-REVT--TAEGKALAEAQ----- 149 (223)
Q Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-~~~~--~~~~~~~~~~~----- 149 (223)
+.......-.|..++|+|+.....-+..+-. .+.... -...|+|+||+|...+ ...+ .+.+....+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 6666666778899999999875443333222 122221 2345777787776533 2211 12233333222
Q ss_pred --CCeEEEEccCCC----CCHHHHHHHHHHHH
Q 027417 150 --GLFFMETSALDS----SNVTAAFQTVVTEI 175 (223)
Q Consensus 150 --~~~~~~~Sa~~~----~~i~~~~~~l~~~~ 175 (223)
+.|++++||+.| +++.++.+.|..++
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 368999999999 66666666555444
No 300
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.28 E-value=7.4e-11 Score=87.05 Aligned_cols=62 Identities=24% Similarity=0.236 Sum_probs=45.1
Q ss_pred EEEEeCCCchh----hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 027417 65 AQIWDTAGQER----FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS 129 (223)
Q Consensus 65 ~~l~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 129 (223)
+.|+||||... ....+..++..+|++|+|.+.++..+-.....+.+..... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 77999999543 3356777889999999999999976656656666665444 34488889984
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.28 E-value=2.7e-11 Score=98.86 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=81.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcccee---EeEEEEEEECCEEEEEEEEeCCCchhhhchhHhh----
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGV---EFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY---- 83 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~---- 83 (223)
....++|+|+|.+|+|||||||+|.|-.........+|+ +......... ..-.+.+||.||.....-....|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 356799999999999999999999874433222222222 2222222222 22247799999965433333333
Q ss_pred -hcCCCEEEEEEECCCHhhHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCCC-------CCcccC----HHHHHHHHH---
Q 027417 84 -YRGAVGALLVYDISRRQTFDSIGRWL-NELHTHSDMNVVTILVGNKSDLK-------DAREVT----TAEGKALAE--- 147 (223)
Q Consensus 84 -~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~-------~~~~~~----~~~~~~~~~--- 147 (223)
+..-|.+|++.+-. |....-++ ..+... ++|+++|-||+|.. .++... .+++++-+.
T Consensus 111 ~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 45789888877743 33333332 333332 78999999999951 111222 223333322
Q ss_pred -HcCC---eEEEEccCCC--CCHHHHHHHHHHHHHHHHh
Q 027417 148 -AQGL---FFMETSALDS--SNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 148 -~~~~---~~~~~Sa~~~--~~i~~~~~~l~~~~~~~~~ 180 (223)
..++ ++|-+|+.+- .++..+.+.|...+.....
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 2233 4888998765 5577788877766655444
No 302
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=1.7e-10 Score=89.18 Aligned_cols=140 Identities=20% Similarity=0.205 Sum_probs=82.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
.....|+|+|.+|+|||||++.+.+...........|. + .+ .......+.++||||.- ..+ ....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEE
Confidence 44578999999999999999999864221111111121 1 11 11244567899999853 222 23457899999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCCcc-c--CHHHHHH-HHHH--cCCeEEEEccCCCCC
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVT-ILVGNKSDLKDARE-V--TTAEGKA-LAEA--QGLFFMETSALDSSN 163 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~~-~--~~~~~~~-~~~~--~~~~~~~~Sa~~~~~ 163 (223)
+++|.+....... ...+..+... +.|. ++|+||+|+.+... . ...+.+. +... .+.+++.+||+++-.
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9999986443222 2233333222 4664 45999999864321 1 1112222 3221 246799999998843
No 303
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.26 E-value=3.9e-10 Score=86.96 Aligned_cols=169 Identities=17% Similarity=0.194 Sum_probs=94.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------ccc-----eeEeEEEE----------------------
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-------STI-----GVEFQTQK---------------------- 55 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-------~~~-----~~~~~~~~---------------------- 55 (223)
..+.+.-|+++|..|||||||+++|.......... |.. +.+...+.
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 45667889999999999999999997642221111 100 00000000
Q ss_pred --------------EEECCEEEEEEEEeCCCchh-h-----hchhHhhh--cCCCEEEEEEECCC---HhhHHHHHHHHH
Q 027417 56 --------------MDINGKEVKAQIWDTAGQER-F-----RAVTSAYY--RGAVGALLVYDISR---RQTFDSIGRWLN 110 (223)
Q Consensus 56 --------------~~~~~~~~~~~l~D~~G~~~-~-----~~~~~~~~--~~~d~~i~v~d~~~---~~s~~~~~~~~~ 110 (223)
+.-....+...++||||+-+ | +.+....+ ...-++++++|... +.+|=+-.-+.-
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 00011234567999999543 2 22333322 34556777777644 444433222222
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCCcc-----cCH---HHHHH-------------HH-----HHcCCeEEEEccCCCCCH
Q 027417 111 ELHTHSDMNVVTILVGNKSDLKDARE-----VTT---AEGKA-------------LA-----EAQGLFFMETSALDSSNV 164 (223)
Q Consensus 111 ~i~~~~~~~~p~ivv~nK~Dl~~~~~-----~~~---~~~~~-------------~~-----~~~~~~~~~~Sa~~~~~i 164 (223)
.+. ...+.|.|++.||+|+..... ... +++.. .+ -..++..+-||+.+|.|+
T Consensus 175 Sil--yktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 175 SIL--YKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHH--HhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 222 233799999999999875311 001 11111 00 022456788999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027417 165 TAAFQTVVTEIYNILS 180 (223)
Q Consensus 165 ~~~~~~l~~~~~~~~~ 180 (223)
+++|..+-+.+-+...
T Consensus 253 ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 253 DDFFTAVDESVDEYEE 268 (366)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999776655443
No 304
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.25 E-value=1.1e-10 Score=92.31 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=56.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchh------
Q 027417 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER------ 75 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~------ 75 (223)
|+|+|.|+||||||+++|++........+.++.+.....+.+.+. ...+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998765444455455555555555443 23588999999432
Q ss_pred -hhchhHhhhcCCCEEEEEEECC
Q 027417 76 -FRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 76 -~~~~~~~~~~~~d~~i~v~d~~ 97 (223)
........++++|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1122233457899999999873
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.23 E-value=7.7e-12 Score=97.19 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=58.0
Q ss_pred EEEEEeCCCchhhhchhHhhh--------cCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417 64 KAQIWDTAGQERFRAVTSAYY--------RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
...++|||||.+....+.... ...-++++++|.....+ ...+..++..+......+.|.|.|.||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 467999999888665555443 34557888888764322 222333333322222237999999999999862
Q ss_pred c------------cc-------CHHHHHHHHHHc---C-C-eEEEEccCCCCCHHHHHHHHHHH
Q 027417 135 R------------EV-------TTAEGKALAEAQ---G-L-FFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 135 ~------------~~-------~~~~~~~~~~~~---~-~-~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
. .. .....+.++... + . .++.+|+.+++|+.+++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 1 00 011122222222 3 3 58999999999999999887643
No 306
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=9.9e-10 Score=88.63 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=62.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC----------------EEEEEEEEeCCC-----
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING----------------KEVKAQIWDTAG----- 72 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~D~~G----- 72 (223)
.+++.|+|-|+||||||.++++.........|+.+++.....+.+.. ....+.++|++|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998776655556556655554443321 345688999998
Q ss_pred --chhhhchhHhhhcCCCEEEEEEECC
Q 027417 73 --QERFRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 73 --~~~~~~~~~~~~~~~d~~i~v~d~~ 97 (223)
.+..++....-++.+|+++.|+|..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2335556666779999999999976
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.20 E-value=2.2e-10 Score=91.15 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=76.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---h
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNS----------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---V 79 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~ 79 (223)
-.++|+|+|.+|+|||||++.|++....... ..+...........-++..+.++++||||...... .
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999986544331 12223333344445577888999999999221100 0
Q ss_pred h-----------Hhhh-------------cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 80 T-----------SAYY-------------RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 80 ~-----------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
+ ..++ ...|++|++++.+...--+.=...++.+.. ..++|-|..|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK----RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc----cccEEeEEecccccCHH
Confidence 0 0011 358899999998763211111234455443 47789999999976432
Q ss_pred cc--CHHHHHHHHHHcCCeEEE
Q 027417 136 EV--TTAEGKALAEAQGLFFME 155 (223)
Q Consensus 136 ~~--~~~~~~~~~~~~~~~~~~ 155 (223)
++ ....+..-....++.+|.
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFD 180 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S--
T ss_pred HHHHHHHHHHHHHHHcCceeec
Confidence 22 123334445566776554
No 308
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.1e-10 Score=91.74 Aligned_cols=162 Identities=18% Similarity=0.128 Sum_probs=104.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---cccee-------EeEEEE-------EEE----------CCEEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK---STIGV-------EFQTQK-------MDI----------NGKEVK 64 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~---~~~~~-------~~~~~~-------~~~----------~~~~~~ 64 (223)
+..++|.++|+..-|||||..+|.+--....+. ..++. .++.+. ... ..-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999998731111100 00000 000000 000 012345
Q ss_pred EEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHH
Q 027417 65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEG 142 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~ 142 (223)
+.|.|.|||+-......+-..--|+.++|++.+.+-.-.+-+..+-.+.-.. -..+|++=||+|+....+ -+++++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 7899999999877766666667899999999998432222122122221111 356899999999986422 356667
Q ss_pred HHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 143 KALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 143 ~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++|.+. .++|++++||..+.||+-+++.|...+
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 777653 367899999999999999999887544
No 309
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.17 E-value=6.2e-10 Score=95.96 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=71.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeE-eEEEEEEECCEEEEEEEEeCCCchhhh-------ch---h
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVE-FQTQKMDINGKEVKAQIWDTAGQERFR-------AV---T 80 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~---~ 80 (223)
+..++|+|+|.+|+||||++|+|++...........+++ .........+ ..+.++||||..... .+ .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 456899999999999999999999876543332111222 2222222333 568899999954321 11 1
Q ss_pred Hhhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCC--CCcEEEEEeCCCCCC
Q 027417 81 SAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM--NVVTILVGNKSDLKD 133 (223)
Q Consensus 81 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~ 133 (223)
..++ ..+|++|+|..++.......-..+++.+...... -..+|||.|+.|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1122 2589999999886432221112334444333221 266899999999775
No 310
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=6.4e-10 Score=91.05 Aligned_cols=157 Identities=16% Similarity=0.057 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
-|+..|+-.-|||||+.++.+..-..... .--|++......+.......+.|+|+||++.+-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47788999999999999999865432111 11244444444444444458899999999999888888889999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH---HcCCeEEEEccCCCCCHHHHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE---AQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|.++.-..+..+.. ..+. ... -...++|+||+|..++.++ .+..+.+.. ..+.++|.+|+++|.||+++.+.|
T Consensus 82 ~~deGl~~qtgEhL-~iLd-llg-i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 82 AADEGLMAQTGEHL-LILD-LLG-IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred eCccCcchhhHHHH-HHHH-hcC-CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence 99764332222211 1111 111 2446899999998864322 222222222 234678999999999999999999
Q ss_pred HHHHH
Q 027417 172 VTEIY 176 (223)
Q Consensus 172 ~~~~~ 176 (223)
...+-
T Consensus 158 ~~L~~ 162 (447)
T COG3276 158 IDLLE 162 (447)
T ss_pred HHhhh
Confidence 87663
No 311
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.15 E-value=7e-11 Score=92.95 Aligned_cols=160 Identities=20% Similarity=0.180 Sum_probs=101.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch---------hhhchhHh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE---------RFRAVTSA 82 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~ 82 (223)
....-|.++|..++|||||+++|+.....+...-+.+.+......... .+-.+.+.||.|.- .|......
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 344678999999999999999999766655444333333333333332 22356688999832 23333333
Q ss_pred hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCC----CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417 83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN----VVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~----~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
. ..+|+++.|.|+++|.--+....-+..+....-.. ..++=|-||.|..+.. . . .+.++ -+.+|+
T Consensus 255 V-aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~-e------~E~n~--~v~isa 323 (410)
T KOG0410|consen 255 V-AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-V-E------EEKNL--DVGISA 323 (410)
T ss_pred H-hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-C-c------cccCC--cccccc
Confidence 3 67999999999999876554444444443332111 2245668888876531 1 1 11222 578899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhh
Q 027417 159 LDSSNVTAAFQTVVTEIYNILSRKV 183 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~~~~~~~~~~ 183 (223)
++|.|++++.+.+-.++.....-..
T Consensus 324 ltgdgl~el~~a~~~kv~~~t~~~e 348 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVASETTVDE 348 (410)
T ss_pred ccCccHHHHHHHHHHHhhhhheeee
Confidence 9999999999998777766555443
No 312
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.2e-10 Score=97.60 Aligned_cols=126 Identities=23% Similarity=0.278 Sum_probs=90.3
Q ss_pred CccccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc---------------ceeEeE--EEEE---EECCE
Q 027417 2 AFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKST---------------IGVEFQ--TQKM---DINGK 61 (223)
Q Consensus 2 ~~~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~---------------~~~~~~--~~~~---~~~~~ 61 (223)
.|.....+-....++|.++|+-++|||+|+..|.....+.-+... -|.... ..+. ...+.
T Consensus 116 ~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~K 195 (971)
T KOG0468|consen 116 EYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGK 195 (971)
T ss_pred HHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCc
Confidence 345556667788899999999999999999999875443221100 011111 1111 12456
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 131 (223)
.+-++++|||||-.+..-..+.++.+|++++++|+.+.-.++.-+-....+ ....|+++|.||+|+
T Consensus 196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHH
Confidence 778999999999999999999999999999999999877766533333333 336899999999995
No 313
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.15 E-value=1.2e-09 Score=88.12 Aligned_cols=104 Identities=19% Similarity=0.112 Sum_probs=64.6
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE 141 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 141 (223)
++.+.|+||+|..... ......+|.++++.+.. +.+.+......+. ++|.++|+||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 4678899999854222 23456788888875443 3334333333332 47789999999987532211000
Q ss_pred ------HHHHHH---HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 142 ------GKALAE---AQGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 142 ------~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
...+.. .+..+++.+||+++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 011111 12346999999999999999999987643
No 314
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=4.7e-10 Score=84.40 Aligned_cols=145 Identities=22% Similarity=0.318 Sum_probs=90.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-----chhHhhhcCC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-----AVTSAYYRGA 87 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-----~~~~~~~~~~ 87 (223)
.-||+++|.+|||||++--.+..+... ....++.+.++......+-|+ ..+.+||.+|++.+- ......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 468999999999999976555533221 122233233444444444433 568899999988542 2456688999
Q ss_pred CEEEEEEECCCHhhHHHH---HHHHHHHhhcCCCCCcEEEEEeCCCCCCC--cccCHHHHHH----HHHHcCCeEEEEcc
Q 027417 88 VGALLVYDISRRQTFDSI---GRWLNELHTHSDMNVVTILVGNKSDLKDA--REVTTAEGKA----LAEAQGLFFMETSA 158 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~----~~~~~~~~~~~~Sa 158 (223)
+++|++||++..+--..+ ++.++.+.++.+ ...+.+..+|+|+... ++...++... +....++.+|++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999987543333 444455555544 5667788999999753 2222333222 22333455777776
Q ss_pred CC
Q 027417 159 LD 160 (223)
Q Consensus 159 ~~ 160 (223)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 54
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=1.1e-09 Score=84.95 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=42.5
Q ss_pred EEEEEEeCCCchh-------------hhchhHhhhc-CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027417 63 VKAQIWDTAGQER-------------FRAVTSAYYR-GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128 (223)
Q Consensus 63 ~~~~l~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 128 (223)
..++++|+||... ...+...+++ ..+++++|+|....-.-.......+.+ ...+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEEC
Confidence 4588999999632 1223455666 456899999886532221212222222 2336899999999
Q ss_pred CCCCC
Q 027417 129 SDLKD 133 (223)
Q Consensus 129 ~Dl~~ 133 (223)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99875
No 316
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.14 E-value=1.8e-09 Score=87.13 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=81.6
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhH-------HHHH---HHHHHH-hhcCCCCCcEEEEEeCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF-------DSIG---RWLNEL-HTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~---~~~~~i-~~~~~~~~p~ivv~nK~D 130 (223)
...+.++|++|+...+.-|.+++.+++++|||+++++-+.. +.+. ..+..+ ...+=.+.++|+++||.|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 36788999999999999999999999999999999873321 1122 223333 222334689999999999
Q ss_pred CCCC---------------cccCHHHHHHHHH--------H--cCCeEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417 131 LKDA---------------REVTTAEGKALAE--------A--QGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 131 l~~~---------------~~~~~~~~~~~~~--------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 180 (223)
+-++ -....+++..+.. . ..+.+..+.|.+-.+|+.+|..+...+...-.
T Consensus 274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 7431 0123444444321 1 12345667899999999999999887765543
No 317
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=7.6e-10 Score=97.35 Aligned_cols=120 Identities=19% Similarity=0.181 Sum_probs=88.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---C-------------ccceeEeEEEEEEECCE-EEEEEEEeCCCc
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS---K-------------STIGVEFQTQKMDINGK-EVKAQIWDTAGQ 73 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~ 73 (223)
.+...+|.|+|+.++|||||..+|+...-.... . ..-|.+........... .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 567799999999999999999998753211110 0 11134444444444444 488999999999
Q ss_pred hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
-.|..-....++-+|+.|+|+|+...-..+.-.-|.+... .++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccccc
Confidence 9999999999999999999999998655555455554433 37999999999998653
No 318
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.09 E-value=2.4e-10 Score=88.12 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=85.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC-----------CCCCCCccce---------------eEeEEEEEEECC-----
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDE-----------FYPNSKSTIG---------------VEFQTQKMDING----- 60 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~~~~----- 60 (223)
...+.|.|.|+||+|||||+++|...- +++++..+-| ...+.+.+-..+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 456899999999999999999885421 1111111111 012222222111
Q ss_pred -------------EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027417 61 -------------KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127 (223)
Q Consensus 61 -------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 127 (223)
.++.+.|++|.|.-... .....-+|.+++|....-.+..+.+..-+-+ +.=++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEe
Confidence 13557788988743322 2234569999999998776655544332222 23489999
Q ss_pred CCCCCCCcccCHHHHHHHHH-------HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 128 KSDLKDAREVTTAEGKALAE-------AQGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 128 K~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
|+|+..+... ..+.+.... .+..|++.+||.++.|++++++.|.+..-
T Consensus 176 KaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9996543222 222222222 12357999999999999999999976443
No 319
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.05 E-value=1.7e-09 Score=79.67 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=52.9
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ--GLFFMETSALDSSNVTA 166 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~ 166 (223)
.-|+|+|++..+-... +-...+. ..=++|.||.|+...-..+.+...+-+++. +.+++++|+++|+|+++
T Consensus 120 ~~v~VidvteGe~~P~--K~gP~i~------~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 120 LRVVVIDVTEGEDIPR--KGGPGIF------KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred eEEEEEECCCCCCCcc--cCCCcee------EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence 6788888887532110 0000111 124899999999876555555555555544 57899999999999999
Q ss_pred HHHHHHHHH
Q 027417 167 AFQTVVTEI 175 (223)
Q Consensus 167 ~~~~l~~~~ 175 (223)
+++++...+
T Consensus 192 ~~~~i~~~~ 200 (202)
T COG0378 192 WLRFIEPQA 200 (202)
T ss_pred HHHHHHhhc
Confidence 999987643
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.05 E-value=4.1e-09 Score=82.53 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=92.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC-----------CCCCCCccceeE---------------eEEEEEEE-------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDE-----------FYPNSKSTIGVE---------------FQTQKMDI------- 58 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~-----------~~~~~~~~~~~~---------------~~~~~~~~------- 58 (223)
.+...|.|.|.||+|||||+..|.... +++++..|-|.- .+...+..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 445789999999999999999885421 123333222210 11111111
Q ss_pred -----------CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027417 59 -----------NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127 (223)
Q Consensus 59 -----------~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 127 (223)
+..++.+.|++|.|.-.... ....-+|.++++.-..-.+..+.++.-+-++ -=|+|+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEe
Confidence 12345688899988543322 2335689988888777666655544433332 2389999
Q ss_pred CCCCCCCcccCHHHH--HHHH----H--HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 128 KSDLKDAREVTTAEG--KALA----E--AQGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 128 K~Dl~~~~~~~~~~~--~~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
|.|.........+.. ..+. . .+..+++.+||.+|+|++++++.+..+..
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 999665322111111 1111 1 12346999999999999999999976653
No 321
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.03 E-value=1.3e-09 Score=91.13 Aligned_cols=167 Identities=19% Similarity=0.326 Sum_probs=124.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.-..+|+.|+|..++|||+|+++++.+.+.....+- + ..+...+.+.+....+.+.|.+|. ....+-..+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~-~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-G-GRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCc-C-ccceeeEEeeccceEeeeecccCC-----chhhhhhhccce
Confidence 345699999999999999999999988776544433 2 234555667777777888888873 233445679999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCC--CcccCHHHHHHHHH-HcCCeEEEEccCCCCCHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKD--AREVTTAEGKALAE-AQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~ 166 (223)
||||.+.+..+|+.+..+...+..+ ....+|.++++++--... .+.+...+++.++. ...+.+|++++..|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 9999999999999998887776544 344688888887654332 24455566665544 4467799999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 027417 167 AFQTVVTEIYNILSRKVM 184 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~~~~ 184 (223)
+|..++.++.....+...
T Consensus 180 vf~~~~~k~i~~~~~qq~ 197 (749)
T KOG0705|consen 180 VFQEVAQKIVQLRKYQQL 197 (749)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 999999888777655553
No 322
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.1e-08 Score=79.84 Aligned_cols=146 Identities=20% Similarity=0.182 Sum_probs=97.4
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCC------CCCC--------CccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEF------YPNS--------KSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
...+....+||..+|+.+-|||||..+++.--. ...+ ...-|+++....+.+.-.....-..|+||
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCC
Confidence 345667789999999999999999888754110 0000 11225555555555543334455899999
Q ss_pred chhhhchhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHH
Q 027417 73 QERFRAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDARE---VTTAEGKAL 145 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~ 145 (223)
+..|-.+...-..+.|+.|+|+++++ |++.+. +.-...-+.| +++++||+|+.+..+ .-..+.+++
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEH-------iLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREH-------ILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhh-------hhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 99998888888889999999999998 344332 2112222565 556699999987433 345667888
Q ss_pred HHHcCCe-----EEEEccC
Q 027417 146 AEAQGLF-----FMETSAL 159 (223)
Q Consensus 146 ~~~~~~~-----~~~~Sa~ 159 (223)
...++.+ ++.-||.
T Consensus 158 Ls~y~f~gd~~Pii~gSal 176 (394)
T COG0050 158 LSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred HHHcCCCCCCcceeechhh
Confidence 8887654 6666764
No 323
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.98 E-value=1e-08 Score=82.46 Aligned_cols=117 Identities=16% Similarity=0.282 Sum_probs=74.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCccceeEeEEEEEEECCEEEEEEEEeCCCchhh---hc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN----------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---RA 78 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~ 78 (223)
...++|+++|+.|+|||||+|.|++...... ..+++........+.-++..+.++++||||...+ ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 5579999999999999999999998633322 1233334444444555677888999999992221 11
Q ss_pred hh-----------Hhhh--------------cCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 79 VT-----------SAYY--------------RGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 79 ~~-----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
.| ..++ ..++++++.+..+... +..+ ...+..+... +.+|-|..|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~~----vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSKR----VNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhcc----cCeeeeeeccccC
Confidence 11 1111 3578899998877643 2222 3345555443 5577778899975
Q ss_pred C
Q 027417 133 D 133 (223)
Q Consensus 133 ~ 133 (223)
.
T Consensus 176 T 176 (373)
T COG5019 176 T 176 (373)
T ss_pred C
Confidence 3
No 324
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.94 E-value=4.1e-09 Score=76.86 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=65.2
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFME 155 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (223)
++.+..+.++++|++|+|+|++++..... ..+...+. ..++|+++|+||+|+...... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 45677888889999999999987643222 11222221 225899999999998642211 1111333445678999
Q ss_pred EccCCCCCHHHHHHHHHHHHH
Q 027417 156 TSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
+||+++.|++++++.|.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987653
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.93 E-value=3.8e-09 Score=83.60 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=40.1
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 119 NVVTILVGNKSDLKDAREVTTAEGKALAEAQ--GLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 119 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
..+-++|+||+|+........+...+..+.. .++++.+|+++|+|+++++++|..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3556999999999753222333333333333 5779999999999999999999763
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.93 E-value=7.5e-09 Score=78.03 Aligned_cols=93 Identities=22% Similarity=0.111 Sum_probs=65.1
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcC
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQG 150 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 150 (223)
+...+..+++.+|++++|+|++++.. .|...+... ..+.|+++|+||+|+... ....+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcC
Confidence 47778888999999999999987542 122222112 236899999999998753 22333333333 2333
Q ss_pred C---eEEEEccCCCCCHHHHHHHHHHHH
Q 027417 151 L---FFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 151 ~---~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
. .++.+||+++.|++++++.|...+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 589999999999999999998765
No 327
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.92 E-value=9.9e-09 Score=78.70 Aligned_cols=96 Identities=19% Similarity=0.156 Sum_probs=64.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRGA 87 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 87 (223)
-+|.++|-|++||||++..+.+...+......+..+.......++ ...+++.|.||.-+ ......+..+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~--gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYK--GAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecc--ccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 489999999999999999999865443333332333333333333 36788999999422 233455667889
Q ss_pred CEEEEEEECCCHhhHHHH-HHHHHHH
Q 027417 88 VGALLVYDISRRQTFDSI-GRWLNEL 112 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~-~~~~~~i 112 (223)
+.+++|+|+..|-+...+ +..++.+
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~ 163 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGF 163 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcc
Confidence 999999999887665443 3344443
No 328
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=8.7e-09 Score=84.34 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=88.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc--CCCC-------------CCCC-----ccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR--DEFY-------------PNSK-----STIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~--~~~~-------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
.....+|+-+|.+|||||-..|+- +.+. ..++ ..-|+......+.++.....+.|.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345678999999999999988752 2111 0000 1224555556666666678889999999
Q ss_pred chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027417 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL 151 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (223)
|+.+..-+=..+..+|..|+|+|+...-.-.. .++++..+ -.+.|++-++||.|.... -..+...++-+.+++
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr---lR~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i 163 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR---LRDIPIFTFINKLDREGR--DPLELLDEIEEELGI 163 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh---hcCCceEEEeeccccccC--ChHHHHHHHHHHhCc
Confidence 99988877777888999999999976422111 22233322 237999999999997642 234444455555544
No 329
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.90 E-value=1.6e-08 Score=94.83 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=74.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCC----C--ccceeEeEEEEEEECCEEEEEEEEeCCCc----h----hhhchhHh
Q 027417 17 VVLIGDSAVGKSNLLARFARDEFYPNS----K--STIGVEFQTQKMDINGKEVKAQIWDTAGQ----E----RFRAVTSA 82 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----~----~~~~~~~~ 82 (223)
-+|+|++|+||||++..- +..++-.. . ...+.+ ..+.+.+.++.+ ++||+|. + .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~~av---liDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTDEAV---LIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecCCEE---EEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999866 44443211 1 111212 234455566555 9999992 1 12233444
Q ss_pred hh---------cCCCEEEEEEECCCHh-----h----HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417 83 YY---------RGAVGALLVYDISRRQ-----T----FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 83 ~~---------~~~d~~i~v~d~~~~~-----s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
++ +..|++|+++|+.+.. . -..++..+.++........||.|+.||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 43 4699999999997632 1 134566777777777779999999999998754
No 330
>PRK12289 GTPase RsgA; Reviewed
Probab=98.90 E-value=1.7e-08 Score=82.78 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=67.3
Q ss_pred hhHhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q 027417 79 VTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (223)
+....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+....+. +...+....++.+++.+|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 3344578999999999999875 44466777766532 36899999999999743221 222233356788899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027417 158 ALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~ 174 (223)
|+++.|++++++.|...
T Consensus 157 A~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 157 VETGIGLEALLEQLRNK 173 (352)
T ss_pred cCCCCCHHHHhhhhccc
Confidence 99999999999988654
No 331
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.3e-08 Score=74.44 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=86.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh---hhchhH
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYP---------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---FRAVTS 81 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---~~~~~~ 81 (223)
.++|+++|.+|.|||||++.|....... ....|+........+.-++....++++||||... ....|.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5999999999999999999987643322 1112222333333344466777889999999221 111111
Q ss_pred -----------hhh--------------cCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC--
Q 027417 82 -----------AYY--------------RGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD-- 133 (223)
Q Consensus 82 -----------~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-- 133 (223)
.++ ..++++++.+..+.. ++..+ ..+++.+.+. ..+|-|.-|+|-..
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeecccccHH
Confidence 111 246677777777653 33333 2344444433 44676777999542
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
++..-.+.++.-...+++.+++-.+.+-..=+..++
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN 236 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN 236 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence 233334445555677888877765554433333333
No 332
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=3.8e-08 Score=79.66 Aligned_cols=145 Identities=19% Similarity=0.267 Sum_probs=87.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCccceeEeEEEEEEECCEEEEEEEEeCCCchhh------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN---------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF------ 76 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------ 76 (223)
.-.++++++|+.|.|||||+|.|+...+... ...+.........+.-++-.+.++++||||....
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3459999999999999999999988644332 1123333334444444677888999999992211
Q ss_pred -h-------chhHhhh-------------cCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417 77 -R-------AVTSAYY-------------RGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 77 -~-------~~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
. .....++ ..++++++.+..+... +..+ ...++.+.. .+.+|-|..|+|....
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~~----~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLSK----KVNLIPVIAKADTLTK 173 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHhc----cccccceeeccccCCH
Confidence 0 0111111 2688899999887642 2222 233444433 4667878889997654
Q ss_pred ccc--CHHHHHHHHHHcCCeEEEEccCCC
Q 027417 135 REV--TTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 135 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
.++ ....+.......++++|....-..
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 322 233345556677888666554443
No 333
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=3.5e-08 Score=75.02 Aligned_cols=171 Identities=18% Similarity=0.216 Sum_probs=101.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---hhHhhhcCCCEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---VTSAYYRGAVGA 90 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~~ 90 (223)
..+|+++|...+||||+-..... +..+...-....+.....-.+.+.-+.+.+||.||+-.+-. -....++.+.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFh-kMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeee-ccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 46799999999999997765543 44443322222222222223344567899999999765422 246678999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCc-ccC-----HHHHHHHHHHc---CC--eEEEEc
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKDAR-EVT-----TAEGKALAEAQ---GL--FFMETS 157 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~-~~~-----~~~~~~~~~~~---~~--~~~~~S 157 (223)
|+|+|.-+. -.+.+..+...+.+. .+.++.+=+...|.|...+. .+. .+.+.+-.... ++ .|+-+|
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999998653 233333333333222 34467777889999965421 111 11111111112 22 344444
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhhhhhH
Q 027417 158 ALDSSNVTAAFQTVVTEIYNILSRKVMISQ 187 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 187 (223)
.-...|-+.|..+++++..+++--++...
T Consensus 185 -IyDHSIfEAFSkvVQkLipqLptLEnlLn 213 (347)
T KOG3887|consen 185 -IYDHSIFEAFSKVVQKLIPQLPTLENLLN 213 (347)
T ss_pred -ecchHHHHHHHHHHHHHhhhchhHHHHHH
Confidence 45578999999999999888776554433
No 334
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.2e-08 Score=79.50 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=81.4
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEE------CCEEE----------------
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDI------NGKEV---------------- 63 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~---------------- 63 (223)
...+-....-|+++|+-+.||||||+.|+...++.... +-.++++....+.- +|+..
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 33445667889999999999999999999887763222 11122222222211 11111
Q ss_pred -----------------EEEEEeCCCchh-----------hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhc
Q 027417 64 -----------------KAQIWDTAGQER-----------FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH 115 (223)
Q Consensus 64 -----------------~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 115 (223)
.++++||||.-+ |......+...+|.+|++||....+--++....+..++.+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 288999999322 3445667788999999999987654434444444444443
Q ss_pred CCCCCcEEEEEeCCCCCCCcc
Q 027417 116 SDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 116 ~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
.-.+-||+||+|..+..+
T Consensus 211 ---EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 211 ---EDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred ---cceeEEEeccccccCHHH
Confidence 345778999999886433
No 335
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.85 E-value=7.5e-09 Score=74.24 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=40.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
+++++|.+|+|||||+|++.+........ ..+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876643222 234555555555554 4679999995
No 336
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.84 E-value=1.7e-08 Score=80.93 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=68.5
Q ss_pred HhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417 81 SAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL 159 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (223)
...+.++|.+++|+|+.++. ++..+..|+..+... ++|+++|+||+|+....+ ...........+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999988 888888888776542 689999999999975311 122233345578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 027417 160 DSSNVTAAFQTVVT 173 (223)
Q Consensus 160 ~~~~i~~~~~~l~~ 173 (223)
++.|+++++..|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999988764
No 337
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.83 E-value=6e-08 Score=81.15 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=75.5
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh----------hH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ----------TF-DSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 131 (223)
..+.++|++|+...+.-|.+++.+++++|+|+++++-+ .+ +++.-|-..+....-.+.|+||+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 56789999999999999999999999999999987521 12 22233333333333347999999999995
Q ss_pred CC-----C------------c-ccCHHHHHHHHHH------------cCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 132 KD-----A------------R-EVTTAEGKALAEA------------QGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 132 ~~-----~------------~-~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
-+ . . .-..+.+..+... ..+.+..++|.+..++..+|+.+...
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 22 0 0 1234555554321 12245678999999999999988753
No 338
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.81 E-value=1.4e-08 Score=75.10 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=41.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
...++|+++|.||+|||||+|+|.+........ ..|++.....+.... .+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEeCC---CEEEEECcCC
Confidence 445899999999999999999999876543322 235555555554443 4679999983
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.81 E-value=1.8e-08 Score=73.60 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=39.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
..++|+++|.||+|||||+|+|.+........ ..|.+.....+..+. .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 35789999999999999999999865533322 235555444444433 2559999983
No 340
>PRK00098 GTPase RsgA; Reviewed
Probab=98.79 E-value=2.6e-08 Score=80.22 Aligned_cols=87 Identities=24% Similarity=0.193 Sum_probs=65.6
Q ss_pred hhcCCCEEEEEEECCCHhhHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417 83 YYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
...++|++++|+|+.++.+... +..|+..+.. .++|+++|+||+|+.+... ..++.....+..+.+++.+||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3589999999999998876544 4677766543 3689999999999963222 122334445667889999999999
Q ss_pred CCHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVT 173 (223)
Q Consensus 162 ~~i~~~~~~l~~ 173 (223)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999988753
No 341
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.78 E-value=1.6e-07 Score=75.95 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=97.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc--------------ceeEeEEEEEEECCE---------------
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKST--------------IGVEFQTQKMDINGK--------------- 61 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--------------- 61 (223)
.+..+.|.+.|+.+.|||||+-.|..+..+...-.+ .+.+.....+-+++.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 455789999999999999999998776554322211 011122222222211
Q ss_pred ------EEEEEEEeCCCchhhhchhHh--hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 62 ------EVKAQIWDTAGQERFRAVTSA--YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 62 ------~~~~~l~D~~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
..-+.|+||.|++.|.+.... +-...|-.++++.+++.-+.-. .+.+.-....+.|+++++||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t----kEHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT----KEHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh----hHhhhhhhhhcCCEEEEEEecccCc
Confidence 123679999999998765544 4467999999999998644222 1222222233799999999999865
Q ss_pred Cccc--CHHHHHH----------------------HHHHcC---CeEEEEccCCCCCHHHHHHHHH
Q 027417 134 AREV--TTAEGKA----------------------LAEAQG---LFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 134 ~~~~--~~~~~~~----------------------~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
...+ ..+++.. .+.+.+ +|+|.+|+.+|+|++-+.+.+.
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 2111 0111111 111122 4789999999999986665443
No 342
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.6e-08 Score=81.42 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=96.8
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----------------------ccceeEeEEEEEEECC---
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-----------------------STIGVEFQTQKMDING--- 60 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~--- 60 (223)
|++..-..++|+++|...+|||||+-.|+.+..+.... ...|++-....+.+.+
T Consensus 160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 34445567999999999999999999888765543221 0111111111111111
Q ss_pred -------EEEEEEEEeCCCchhhhchhHhhhc--CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417 61 -------KEVKAQIWDTAGQERFRAVTSAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 61 -------~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 131 (223)
..--++++|.+|+..|.......+. ..|...++++++..-.+..-+ .+-.+ ...++|++++++|+|+
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE-HLgl~---~AL~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE-HLGLI---AALNIPFFVLVTKMDL 315 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH-HHHHH---HHhCCCeEEEEEeecc
Confidence 1223789999999999877665443 477788888887754332211 11112 2237999999999998
Q ss_pred CCCc------------------------ccCHHHHHHHHH----HcCCeEEEEccCCCCCHHHHHHHH
Q 027417 132 KDAR------------------------EVTTAEGKALAE----AQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 132 ~~~~------------------------~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
.... --+..++-..+. ..-.|+|.+|+.+|+|++.+...|
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 6520 011122222222 222468999999999988765444
No 343
>PRK12288 GTPase RsgA; Reviewed
Probab=98.77 E-value=6.3e-08 Score=79.37 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=67.5
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCeEEEEccCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
..++|.+++|+++....++..+..|+..+.. .++|+++|+||+|+....+. ...+........+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 3679999999999888889999999875542 36899999999999753211 1122233345678899999999999
Q ss_pred CHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTE 174 (223)
Q Consensus 163 ~i~~~~~~l~~~ 174 (223)
|++++++.|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988653
No 344
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.72 E-value=1.6e-06 Score=62.14 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=82.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCC-C------------------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA-G------------------ 72 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-G------------------ 72 (223)
...++|.|.|+|||||||++..+...--...+.- .-+....+.-.+...-|.+.|+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 3568999999999999999988875322222111 12334444556666777777776 3
Q ss_pred ---chhhh----chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 027417 73 ---QERFR----AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL 145 (223)
Q Consensus 73 ---~~~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (223)
.+.+. ......++.+|+ +++|--.+..+.. ..+...+....+.+.|++.++.+.+.. -..+++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElks-~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~i 149 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELKS-KKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQRI 149 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhcc-HHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHHh
Confidence 11111 122233456774 4667665533322 344555555555678888888766532 112223
Q ss_pred HHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 146 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
....++.+| .+.+|-+.+++.+++.+
T Consensus 150 k~~~~v~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLGGVYVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred hhcCCEEEE----EccchhhHHHHHHHHHh
Confidence 222334444 55556667777777654
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.71 E-value=7.2e-08 Score=78.92 Aligned_cols=83 Identities=17% Similarity=0.027 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchh---
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER--- 75 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~--- 75 (223)
+++.|+|.|++|||||+++|++... .....|..+.......+.+.+. ...+.+.|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 5544455455555555555442 24678999999433
Q ss_pred ----hhchhHhhhcCCCEEEEEEECC
Q 027417 76 ----FRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 76 ----~~~~~~~~~~~~d~~i~v~d~~ 97 (223)
........++++|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 3334555679999999999984
No 346
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.69 E-value=9.9e-08 Score=78.87 Aligned_cols=94 Identities=22% Similarity=0.257 Sum_probs=68.9
Q ss_pred chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHH
Q 027417 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK----ALAEA 148 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~ 148 (223)
.+.+..+...+.+.++++++|+|+.+.. ..|...+..... +.|+++|+||+|+.. +....+... ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 4678888888889999999999997643 234444443332 579999999999875 233333433 34566
Q ss_pred cCC---eEEEEccCCCCCHHHHHHHHHH
Q 027417 149 QGL---FFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 149 ~~~---~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
.++ .++.+||+++.|++++++.|.+
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 676 3899999999999999999865
No 347
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.68 E-value=3.8e-08 Score=78.23 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=66.1
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC---------------EEEEEEEEeCCCch
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING---------------KEVKAQIWDTAGQE 74 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~~ 74 (223)
+....+++.|+|-|+||||||+|+|+.....+...|..+++.....+.+.. ....++++|++|..
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 445678999999999999999999999887777677766666655554432 34568999999832
Q ss_pred -------hhhchhHhhhcCCCEEEEEEECC
Q 027417 75 -------RFRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 75 -------~~~~~~~~~~~~~d~~i~v~d~~ 97 (223)
..++-....++++|+++.|+++.
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 23444455678999999998865
No 348
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.5e-07 Score=77.18 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=72.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEe----------------------------------------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEF---------------------------------------- 51 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 51 (223)
....||+|.|..++||||++|+++.....+.....++.-+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4568999999999999999999987554433221111000
Q ss_pred ---EEEEEEECCE-----EEEEEEEeCCCchh---hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCC
Q 027417 52 ---QTQKMDINGK-----EVKAQIWDTAGQER---FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120 (223)
Q Consensus 52 ---~~~~~~~~~~-----~~~~~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 120 (223)
....+..+.. .-.+.++|.||.+. ...-.......+|++|+|....+..+..+...+. .....++
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~----~vs~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH----KVSEEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHH----HhhccCC
Confidence 0011111111 11366889999543 3333344557899999999999877665533332 2233356
Q ss_pred cEEEEEeCCCCCCC
Q 027417 121 VTILVGNKSDLKDA 134 (223)
Q Consensus 121 p~ivv~nK~Dl~~~ 134 (223)
.++|+.||.|....
T Consensus 263 niFIlnnkwDasas 276 (749)
T KOG0448|consen 263 NIFILNNKWDASAS 276 (749)
T ss_pred cEEEEechhhhhcc
Confidence 67777889997654
No 349
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.3e-07 Score=87.07 Aligned_cols=164 Identities=22% Similarity=0.252 Sum_probs=96.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEEEECCEEEEEEEEeCCC----c----hhhhchhHhhh-
Q 027417 18 VLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMDINGKEVKAQIWDTAG----Q----ERFRAVTSAYY- 84 (223)
Q Consensus 18 ~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~----~~~~~~~~~~~- 84 (223)
+|+|++|+||||++..- +..++.... ...+..+..+...+.++.+ ++||+| + +.....|..++
T Consensus 129 ~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaV---lIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 129 MVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAV---LIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred EEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceE---EEcCCcceecccCcchhhHHHHHHHHH
Confidence 79999999999998732 223321110 1111112334455666666 999998 2 12334455442
Q ss_pred --------cCCCEEEEEEECCCHhh---------HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----ccCHHHH
Q 027417 85 --------RGAVGALLVYDISRRQT---------FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR-----EVTTAEG 142 (223)
Q Consensus 85 --------~~~d~~i~v~d~~~~~s---------~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~ 142 (223)
+..|++|+.+|+.+..+ ...++.-+.++........||+|++||.|+...- ..+.++.
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~r 284 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEER 284 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCHHHH
Confidence 67999999999976211 2234555667777777789999999999987531 1121221
Q ss_pred HHHHHHcCCeEEEEccCCCCC----HHHHHHHHHHHHHHHHhhhhhhhHhh
Q 027417 143 KALAEAQGLFFMETSALDSSN----VTAAFQTVVTEIYNILSRKVMISQEL 189 (223)
Q Consensus 143 ~~~~~~~~~~~~~~Sa~~~~~----i~~~~~~l~~~~~~~~~~~~~~~~~~ 189 (223)
.. -+|+ -|...+....+ +..-|..++.++..++..++..+...
T Consensus 285 ~q---vwG~-tf~~~~~~~~~~~~~~~~e~~~L~~rl~~~l~~rl~~e~~~ 331 (1188)
T COG3523 285 EQ---VWGV-TFPLDARRNANLAAELEQEFRLLLDRLNAQLVERLQQERDL 331 (1188)
T ss_pred hh---hcee-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 11 1222 35556655533 45556666666666666666555444
No 350
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2.7e-07 Score=78.09 Aligned_cols=140 Identities=19% Similarity=0.167 Sum_probs=84.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+.++++-|+|+|+||+||||||+.|+.+-.....+...| ..+ .+.+...++++.++|. .. .......+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl-~~miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DL-HQMIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HH-HHHHhHHHhhhe
Confidence 345678889999999999999999986422111111111 111 2466778899999982 22 234445577999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccCHHHHH----HHHH--HcCCeEEEEccCCC
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREVTTAEGK----ALAE--AQGLFFMETSALDS 161 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~----~~~~--~~~~~~~~~Sa~~~ 161 (223)
+++++|.+-.-.++.. .+++.+..+ +.| ++-|+|+.|+-.......+... .|.. ..|+.+|.+|...+
T Consensus 137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 9999998765333332 223333333 344 5667999998754322222222 1221 23788899887543
No 351
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=5.7e-08 Score=84.28 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=85.5
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
..+...+|+++-+...|||||++.|+..+-.. ...++-|++.....+..-...+.+.++|+|||-.
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 44567899999999999999999997643211 1123445666555555555678899999999999
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 131 (223)
|........+-+|++++++|+...-.-+. +..++..+..+..+++|.||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999999987533222 22222222335678999999994
No 352
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=8e-08 Score=71.20 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=41.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
+..++++++|.+|+|||||++++.+..+... ....+++.....+.+. ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4458999999999999999999998765422 2333455555555444 34679999994
No 353
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.65 E-value=7.2e-08 Score=74.75 Aligned_cols=154 Identities=21% Similarity=0.162 Sum_probs=92.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhch
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAV 79 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 79 (223)
....+.++++|.+++|||+|++.++......... +..|.+.....+.+.. .+.++|.|| -..+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 4567999999999999999999998754433222 2445555555555554 455999999 2234555
Q ss_pred hHhhhcCCC---EEEEEEECCCHh--hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----cCHHHHHH------
Q 027417 80 TSAYYRGAV---GALLVYDISRRQ--TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE----VTTAEGKA------ 144 (223)
Q Consensus 80 ~~~~~~~~d---~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~------ 144 (223)
...++.+-+ -+++++|++-+- .-.....|+.+ .++|..+|.||||....-- -....+..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 555553322 345566665431 11122333322 3799999999999753210 00111111
Q ss_pred -HHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 145 -LAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 145 -~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
-......|++.+|+.++.|+++++-.+.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 11222456778999999999999877764
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.64 E-value=1e-07 Score=76.05 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=42.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
...++|+++|.||+|||||+|+|.+........ ..|++.....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence 356899999999999999999999866443322 235555555555543 4679999996
No 355
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.63 E-value=1.4e-07 Score=75.65 Aligned_cols=58 Identities=26% Similarity=0.367 Sum_probs=42.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
...++|+|+|.||||||||+|+|.+...... ....|++.....+.... .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 4568999999999999999999998765333 22335665555555543 4669999995
No 356
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.63 E-value=7.2e-08 Score=72.65 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=40.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYP-------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
..+++++|.+|+|||||+|+|.+..... ......|++.....+.+.. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 3689999999999999999999754311 1222235666666665543 4679999993
No 357
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.60 E-value=1.8e-07 Score=68.21 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=39.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
...+++++|.+++|||||++++.+... ....++.|.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999997553 23344555554443333333 577999998
No 358
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.60 E-value=4.7e-08 Score=70.93 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CccceeEeEEEEEEECCEEEEEEEEeCCCchhh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 76 (223)
-.++++|++|||||||+|.|.+....... ....-++.....+.++...+ ++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~---iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGY---IIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEE---EECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcE---EEECCCCCcc
Confidence 46789999999999999999986322111 11111222344445544444 9999996554
No 359
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.58 E-value=3.4e-08 Score=74.64 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=81.4
Q ss_pred EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh----------hHHHHHHHHHHHhhc-CCCCCcEEEEEeCC
Q 027417 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ----------TFDSIGRWLNELHTH-SDMNVVTILVGNKS 129 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~ 129 (223)
..+.+.+.|++|+.+.+.-|.+.+.+...+++++.++.-+ .+++-...+..+..+ +-.+.++|+.+||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 4456779999999999999999999988888877766422 223333344444333 44578999999999
Q ss_pred CCCCC----------------cccCHHHHHHHHHHc----CC------eEEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q 027417 130 DLKDA----------------REVTTAEGKALAEAQ----GL------FFMETSALDSSNVTAAFQTVVTEIYNILSR 181 (223)
Q Consensus 130 Dl~~~----------------~~~~~~~~~~~~~~~----~~------~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 181 (223)
|+.++ .+...+.+++|..+. +. .-..+.|.+-+||.-+|.++...++....+
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~Lk 354 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 354 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhH
Confidence 98652 223444555554322 21 124477889999999999988777665443
No 360
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=76.19 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=45.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
..++++|+|.|+||||||||+|.+...... .+..|++.....+..... +.|+||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence 358899999999999999999999776433 333388887877777664 669999994
No 361
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.53 E-value=3.4e-06 Score=71.34 Aligned_cols=140 Identities=21% Similarity=0.322 Sum_probs=86.4
Q ss_pred ccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccc------------------------------------
Q 027417 5 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTI------------------------------------ 47 (223)
Q Consensus 5 ~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~------------------------------------ 47 (223)
+..+...+..++|+|+|+.++||||.+..+....+.+. +....
T Consensus 299 D~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~ 378 (980)
T KOG0447|consen 299 DASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAA 378 (980)
T ss_pred cccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHH
Confidence 34456667889999999999999999998865433221 11000
Q ss_pred ---------------e--eEeEEEEEEECCE-EEEEEEEeCCCc-------------hhhhchhHhhhcCCCEEEEEEEC
Q 027417 48 ---------------G--VEFQTQKMDINGK-EVKAQIWDTAGQ-------------ERFRAVTSAYYRGAVGALLVYDI 96 (223)
Q Consensus 48 ---------------~--~~~~~~~~~~~~~-~~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~ 96 (223)
| +........+.|. --++.+.|.||. +..-.+..++..+++++|+|+--
T Consensus 379 LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD 458 (980)
T KOG0447|consen 379 LRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD 458 (980)
T ss_pred HHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc
Confidence 0 0011112222221 124679999992 22334567788999999999854
Q ss_pred CCH-hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH
Q 027417 97 SRR-QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE 147 (223)
Q Consensus 97 ~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 147 (223)
..- .....+...... ..+.+...|+|+||.|+.+.+-.+...++.+..
T Consensus 459 GSVDAERSnVTDLVsq---~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 459 GSVDAERSIVTDLVSQ---MDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred CCcchhhhhHHHHHHh---cCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 332 222333333333 344578899999999999876677777777654
No 362
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=3.4e-07 Score=66.72 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=38.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
....+++++|.+|+|||||+|+|.+..... ...+ +++......... ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~--~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP--GTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCC--CcccceEEEEec---CCEEEEECCCC
Confidence 456889999999999999999999865322 2222 333333334333 24679999983
No 363
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.52 E-value=5.9e-07 Score=65.55 Aligned_cols=87 Identities=15% Similarity=0.046 Sum_probs=56.4
Q ss_pred hhcCCCEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417 83 YYRGAVGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
.+..+|++++|+|++++.. ...+..++. .. ..+.|+++|+||+|+...... ......+.+......+.+||++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 3578999999999998642 223333332 22 335899999999999643211 1112222222223357899999
Q ss_pred CCCHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTE 174 (223)
Q Consensus 161 ~~~i~~~~~~l~~~ 174 (223)
+.|++++++.+...
T Consensus 80 ~~~~~~L~~~l~~~ 93 (157)
T cd01858 80 PFGKGSLIQLLRQF 93 (157)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999998654
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.47 E-value=9.2e-07 Score=64.41 Aligned_cols=84 Identities=17% Similarity=0.013 Sum_probs=55.1
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
|++|+|+|+.++.+... .++.. ......++|+++|+||+|+....++ .+....+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988765432 23321 1112236899999999998642211 11111232333556899999999999999
Q ss_pred HHHHHHHH
Q 027417 168 FQTVVTEI 175 (223)
Q Consensus 168 ~~~l~~~~ 175 (223)
++.+.+..
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99987654
No 365
>PRK12288 GTPase RsgA; Reviewed
Probab=98.46 E-value=3.3e-07 Score=75.17 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=36.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCcc------ceeEeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027417 17 VVLIGDSAVGKSNLLARFARDEFYPNSKST------IGVEFQTQKMDINGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 77 (223)
++|+|.+|||||||+|+|++........-. --++.....+.+.+.. .|+||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 789999999999999999976433211110 0123333444444333 399999976554
No 366
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.43 E-value=7.1e-06 Score=63.45 Aligned_cols=88 Identities=18% Similarity=0.066 Sum_probs=53.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC---ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc------h
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFYPNSK---STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA------V 79 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~ 79 (223)
.....-|.|+|++++|||+|+|.|++. .+..... .|.|+-.....+. .+....+.++||+|...... .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence 345677899999999999999999987 5543222 2222221111111 12346788999999543222 1
Q ss_pred hHhhhc--CCCEEEEEEECCCH
Q 027417 80 TSAYYR--GAVGALLVYDISRR 99 (223)
Q Consensus 80 ~~~~~~--~~d~~i~v~d~~~~ 99 (223)
....+. -++++|+..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 222233 38888887777653
No 367
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.8e-06 Score=68.98 Aligned_cols=148 Identities=19% Similarity=0.149 Sum_probs=95.0
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcC-------------CCCCCC-CccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARD-------------EFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~-------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.++.+..||.-+|+..-|||||-.+++.- .++..+ ...-|+++....+.+.-.....-=.|+||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 45677899999999999999998777531 011000 0122555666655554333334467999999
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHcC-
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR---EVTTAEGKALAEAQG- 150 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~- 150 (223)
.|-.....-..+-|+.|+|+..++..--+. +..+-..+... -..+++.+||.|+.+.. ++-..+.+++...++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 998888877789999999999999432111 11122222221 14566779999998432 344567788877776
Q ss_pred ----CeEEEEccC
Q 027417 151 ----LFFMETSAL 159 (223)
Q Consensus 151 ----~~~~~~Sa~ 159 (223)
+|++.-||.
T Consensus 206 ~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 206 DGDNTPVIRGSAL 218 (449)
T ss_pred CCCCCCeeecchh
Confidence 467776653
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.41 E-value=4.1e-06 Score=68.03 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=80.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------Cc--------------cceeEeEEEEEE-------E------C
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNS-------KS--------------TIGVEFQTQKMD-------I------N 59 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~-------~~--------------~~~~~~~~~~~~-------~------~ 59 (223)
.--|+++|++|+||||++..|.+....... +. ..+..+...... + .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999887652111100 00 001111111000 0 1
Q ss_pred CEEEEEEEEeCCCchhhhch----hHhh--------hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027417 60 GKEVKAQIWDTAGQERFRAV----TSAY--------YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 127 (223)
...+.+.++||||....... .... -..++..++|+|++... +.+.. ...+... -.+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---CCCCEEEEE
Confidence 13457889999995432221 1111 13577889999998632 22222 1222211 134578899
Q ss_pred CCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 128 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|.|... ..-.+...+...++|+..++ +|++++++-..
T Consensus 268 KlD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 268 KLDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence 999543 12344555667799988887 77777766443
No 369
>PRK12289 GTPase RsgA; Reviewed
Probab=98.41 E-value=4.6e-07 Score=74.35 Aligned_cols=55 Identities=27% Similarity=0.371 Sum_probs=35.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCccce-------eEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIG-------VEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
++|+|++|||||||||+|++.......... + ++.....+..++.. .|+||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs-~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVS-GKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcccccccccc-CCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 799999999999999999975433211111 1 23344444454333 4999999644
No 370
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=3.8e-07 Score=74.53 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=98.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCCCC--------ccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD--------EFYPNSK--------STIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~--------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
....+|.|+.+-.+||||.-.++++- ..+.... ..-|.+....-+.++..++++.++||||+-.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 44578999999999999998887652 1111110 1225677788888899999999999999999
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF 152 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (223)
|.--.+..++-.|+++.|||.+..-.-+.+.-|.+. .+.++|.+...||+|...++. ...+...-+++++.
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ak 185 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGAK 185 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCCc
Confidence 999999999999999999999986655566666443 344789999999999865422 12223334455554
No 371
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.40 E-value=3.5e-06 Score=68.29 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=86.1
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCccceeEe--------------------
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPN------------------SKSTIGVEF-------------------- 51 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~------------------~~~~~~~~~-------------------- 51 (223)
.+=.+++|+++|+..+|||||+..|+.+..+.. .....|.++
T Consensus 129 ~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L 208 (641)
T KOG0463|consen 129 KDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL 208 (641)
T ss_pred ccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence 344579999999999999999987765433211 111111111
Q ss_pred EEEEEEECCEEEEEEEEeCCCchhhhchh--HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 027417 52 QTQKMDINGKEVKAQIWDTAGQERFRAVT--SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS 129 (223)
Q Consensus 52 ~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 129 (223)
....+ ..+..-.++++|.+|++.|.... .+.-.-.|...+++..+-.- -... .+.+.-......|+++|+||+
T Consensus 209 dWvkI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI--iGmT--KEHLgLALaL~VPVfvVVTKI 283 (641)
T KOG0463|consen 209 DWVKI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI--IGMT--KEHLGLALALHVPVFVVVTKI 283 (641)
T ss_pred cceee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc--eecc--HHhhhhhhhhcCcEEEEEEee
Confidence 11111 11223347899999999986543 22234467667776665421 0000 111211223368999999999
Q ss_pred CCCCCcccCH--HHHHHHHH--------------------------HcCCeEEEEccCCCCCHHHHHH
Q 027417 130 DLKDAREVTT--AEGKALAE--------------------------AQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 130 Dl~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
|+..++.+.. .....+.+ +.=||+|.+|..+|.|+..+..
T Consensus 284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 9765432211 11112222 2235688999999999876543
No 372
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.38 E-value=1.7e-06 Score=61.97 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=52.6
Q ss_pred HhhhcCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417 81 SAYYRGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
...+..+|++++|+|+.++.+.. .+..|+... . .++|+++|+||+|+.+... .....+.....+..++.+||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 34558899999999999876533 444554432 1 3689999999999864322 23334455566778999999
Q ss_pred CCCCC
Q 027417 159 LDSSN 163 (223)
Q Consensus 159 ~~~~~ 163 (223)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 87653
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.36 E-value=4.2e-06 Score=66.50 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=57.7
Q ss_pred EEEEEEEeCCCchhhhchhH-------hhh-----cCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027417 62 EVKAQIWDTAGQERFRAVTS-------AYY-----RGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNK 128 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK 128 (223)
.+.+.++||||......... ... ..+|.+++|+|.+... .+..+ ..+.+.. .+.-+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence 46788999999654322211 111 2388999999997532 23322 2222211 245788999
Q ss_pred CCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
.|... ..-.+..+....+.|+..++ +|++++++-..
T Consensus 227 lDe~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 227 LDGTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred cCCCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 99653 23344555666789987777 77777666443
No 374
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.34 E-value=8.1e-07 Score=70.40 Aligned_cols=59 Identities=24% Similarity=0.257 Sum_probs=38.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEF------YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 77 (223)
-.+++|++|||||||+|+|..... .......--+++....+.+++.++ ++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 457999999999999999986322 111111112344555666665555 89999975543
No 375
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.34 E-value=5.4e-07 Score=67.76 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE-----
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA----- 90 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~----- 90 (223)
.|+|+|++|||||||++++.+-+... ...+.+++..+.... | ....+......+.+.+.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~-----------~G~I~i~g~~~~~~~-~---~~~~R~~vGmVFQ~fnLFPHlTv 94 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD-----------SGSITVDGEDVGDKK-D---ILKLRRKVGMVFQQFNLFPHLTV 94 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC-----------CceEEECCEeccchh-h---HHHHHHhcCeecccccccccchH
Confidence 57899999999999999998754322 223334443221000 1 111222222223322222
Q ss_pred --------EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC-----CCCCcccCHHHHHHHHHHcCCeEEE--
Q 027417 91 --------LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD-----LKDAREVTTAEGKALAEAQGLFFME-- 155 (223)
Q Consensus 91 --------i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D-----l~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (223)
+.|-.....+.-+....++..+. +..|.| |....+...+-++.++....+-+|.
T Consensus 95 leNv~lap~~v~~~~k~eA~~~A~~lL~~VG-----------L~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP 163 (240)
T COG1126 95 LENVTLAPVKVKKLSKAEAREKALELLEKVG-----------LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP 163 (240)
T ss_pred HHHHHhhhHHHcCCCHHHHHHHHHHHHHHcC-----------chhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC
Confidence 11222222233333344444432 122333 2233445566677777777776664
Q ss_pred EccCCCCCHHHHHHHHHHHHHHH
Q 027417 156 TSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
+||.+.+-+.++++.+...+.+-
T Consensus 164 TSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 164 TSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHcC
Confidence 89999999999999887766443
No 376
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.32 E-value=2.4e-06 Score=63.27 Aligned_cols=91 Identities=18% Similarity=0.049 Sum_probs=60.0
Q ss_pred hchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEE
Q 027417 77 RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMET 156 (223)
Q Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (223)
.......+.++|++++|+|++++...... .+...+ .+.|+++|+||+|+..... .....++....+..++.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 33445567899999999999876442211 122221 1478999999999864211 111112223334568999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~ 175 (223)
||+++.|++++.+.+...+
T Consensus 82 Sa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 9999999999999988765
No 377
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=9.7e-06 Score=62.26 Aligned_cols=155 Identities=21% Similarity=0.292 Sum_probs=94.5
Q ss_pred eEEEEEcCCCC--CHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEE----EEEEeCCCchhhhchhHhhhcCCC
Q 027417 15 FKVVLIGDSAV--GKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK----AQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 15 ~~i~i~G~~~s--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
.-++++|.+|+ ||.+|+.+|....+.........+.+.. ++++.++|. +.+.-.. +.+.-..........
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg--wtid~kyysadi~lcishic--de~~lpn~~~a~pl~ 80 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG--WTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQ 80 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeec--eEecceeeecceeEEeeccc--chhccCCccccccee
Confidence 34789999998 9999999998877765444332233332 333433332 2222221 112111222234567
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC----------------------------------
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKD---------------------------------- 133 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~---------------------------------- 133 (223)
+++++||.+...++..++.|+..-... ..- .+.|+||.|...
T Consensus 81 a~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eEEEEEeccchhhhHHHHhhccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 899999999999999999998754322 122 345589998632
Q ss_pred --------C--cccCHHHHHHHHHHcCCeEEEEccC------------CCCCHHHHHHHHHHHHH
Q 027417 134 --------A--REVTTAEGKALAEAQGLFFMETSAL------------DSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 134 --------~--~~~~~~~~~~~~~~~~~~~~~~Sa~------------~~~~i~~~~~~l~~~~~ 176 (223)
+ .-.....+.+++.++++.|++.++. +..|+..+|.+|-..+-
T Consensus 158 egssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 0 0012234567888999999998874 33577778877755543
No 378
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.31 E-value=4.5e-06 Score=66.63 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=64.3
Q ss_pred CCchh-hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 027417 71 AGQER-FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ 149 (223)
Q Consensus 71 ~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 149 (223)
|||.. ........+..+|++|+|+|+..+.+... ......+ .+.|+++|+||+|+.+... .....+.....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence 55432 33445667789999999999987654322 1111112 1579999999999864211 11111222334
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417 150 GLFFMETSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 150 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
+.+++.+||+++.|++++.+.+.+.+.+
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 5678999999999999999998776644
No 379
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=3.4e-06 Score=72.04 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=84.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCC-------------ccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEF---YPNSK-------------STIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~---~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
....+|.+.-+-.+||||+-++.+...- ..... ...|++....-..+....+.+.++|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 5667899999999999999887754211 00000 1113444444445555678899999999999
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
|.--.+..++-.|+.|+++|....-.-+...-|.+.-+. ++|.|..+||+|..
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry----~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY----NVPRICFINKMDRM 169 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc----CCCeEEEEehhhhc
Confidence 888888888999999999998876555555566555332 68999999999963
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=98.30 E-value=1.5e-06 Score=70.92 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=56.9
Q ss_pred EEEEEEeCCCchhhhc-h---hHhh--hcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 63 VKAQIWDTAGQERFRA-V---TSAY--YRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
+.+.|+||+|...... + .... ..+.|.+++|+|+..... .+.+..+... -.+--+|.||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCCCC-
Confidence 4688999999653221 1 1111 135788899999976432 2222222221 1235788999997532
Q ss_pred ccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
.-.+..++...+.|+..++ +|.+++++...=
T Consensus 295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~ 325 (336)
T PRK14974 295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPFD 325 (336)
T ss_pred ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccCC
Confidence 2233444556789987776 788887765443
No 381
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.28 E-value=2.1e-05 Score=65.01 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=91.1
Q ss_pred cccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CCCccceeEe----------EEEEEEE-CC
Q 027417 6 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------------NSKSTIGVEF----------QTQKMDI-NG 60 (223)
Q Consensus 6 ~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~--------------~~~~~~~~~~----------~~~~~~~-~~ 60 (223)
+-..+....+=|.|+||..+||||||.++...-.-+ -+....|-+. ....+.+ ++
T Consensus 9 DIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~ 88 (492)
T PF09547_consen 9 DIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDG 88 (492)
T ss_pred HHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCC
Confidence 344555667889999999999999999986521111 1111111111 1122333 45
Q ss_pred EEEEEEEEeCCCc--------hh---hh---chh--------Hh-------hh-c-CCCEEEEEEECCC----HhhHHHH
Q 027417 61 KEVKAQIWDTAGQ--------ER---FR---AVT--------SA-------YY-R-GAVGALLVYDISR----RQTFDSI 105 (223)
Q Consensus 61 ~~~~~~l~D~~G~--------~~---~~---~~~--------~~-------~~-~-~~d~~i~v~d~~~----~~s~~~~ 105 (223)
-.+++.++|+.|- .. .+ +-| .+ .+ . ..-++++.-|.+= ++.+...
T Consensus 89 ~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eA 168 (492)
T PF09547_consen 89 IKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEA 168 (492)
T ss_pred ceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHH
Confidence 6788999999881 00 00 000 00 01 1 2335666666542 3333333
Q ss_pred -HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC--CCCCHHHHHHHH
Q 027417 106 -GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL--DSSNVTAAFQTV 171 (223)
Q Consensus 106 -~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l 171 (223)
+.-..++... ++|+|+++|-.+-. .+-..+.+.++..+++++++.+++. +...|..+++.+
T Consensus 169 EervI~ELk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 169 EERVIEELKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHHHHHHHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 3344444443 79999999977744 2335677788888999998877653 334555555443
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=6.6e-06 Score=68.24 Aligned_cols=94 Identities=24% Similarity=0.301 Sum_probs=62.1
Q ss_pred hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHHHc
Q 027417 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA----LAEAQ 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~~ 149 (223)
+.+...........+.+++|+|+.+.. ..|...+..... +.|+++|+||+|+.. .....+.... +++..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence 345554444433344899999997743 234444443332 578999999999964 2333333333 35556
Q ss_pred CC---eEEEEccCCCCCHHHHHHHHHHH
Q 027417 150 GL---FFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 150 ~~---~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999998653
No 383
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.27 E-value=6.2e-06 Score=60.25 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCchhhhchhHh--------hhcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSA--------YYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 131 (223)
.....++|++|.......... ..-..|.+++++|+.+... ++....+..++... =++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 345679999996543333322 2235888999999865332 22222333444322 2778999995
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=1.4e-06 Score=72.26 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=38.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC----CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEF----YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.++.++|.+|||||||+|+|+.... ........|++.....+.+++.. .++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~---~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGS---FLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCc---EEEECCCcc
Confidence 4799999999999999999986431 11112233555555555555432 599999964
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.27 E-value=1.4e-06 Score=68.25 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CccceeEeEEEEEEECCEEEEEEEEeCCCchhh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 76 (223)
-.++++|.+|||||||+|+|.+....... .....++.....+...+ . .++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCcccc
Confidence 36789999999999999999975432211 11111233333344432 2 49999996543
No 386
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.22 E-value=3.1e-06 Score=70.07 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=38.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC----CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFY----PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
.+|+++|.+|||||||+|+|++.... .......|++.....+...+. +.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 58999999999999999999974321 111222345555555555332 45999999543
No 387
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.20 E-value=7.6e-06 Score=65.69 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCCchh-hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 027417 70 TAGQER-FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA 148 (223)
Q Consensus 70 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (223)
.|||.. -.......+..+|++|+|+|+..+.+... .++.... . +.|+++|+||+|+.+... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 466432 33345566789999999999987654322 1122211 1 589999999999864211 1122222334
Q ss_pred cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417 149 QGLFFMETSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 149 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
.+.+++.+|++++.|++++.+.+...+.+
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 46778999999999999999988776543
No 388
>PRK01889 GTPase RsgA; Reviewed
Probab=98.18 E-value=1e-05 Score=66.89 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=59.1
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 162 (223)
..++|.+++|+++..+-....+..++..+... ++++++|+||+|+.+... +....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997544555566666665443 577899999999975311 11222222 446789999999999
Q ss_pred CHHHHHHHHH
Q 027417 163 NVTAAFQTVV 172 (223)
Q Consensus 163 ~i~~~~~~l~ 172 (223)
|++++..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999988874
No 389
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.17 E-value=3.9e-06 Score=67.34 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------ccceeEeEEEEEEECCEEEEEEEEeCCCchhh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK------STIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 76 (223)
..++++|++|+|||||+|.|.+........ ....++.....+...+.. .++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 468999999999999999999864432111 111123334444444333 49999997655
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=98.14 E-value=5e-06 Score=67.08 Aligned_cols=58 Identities=31% Similarity=0.359 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc----ce--eEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKST----IG--VEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
..++++|++|||||||+|+|.+........-. .| ++.....+..++.. .++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCc
Confidence 35899999999999999999875433211110 01 22233333344333 5999999643
No 391
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.14 E-value=2.4e-05 Score=60.53 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=51.0
Q ss_pred EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh-------hHHHHHHHHHHH----hhcCCCCCcEEEEEeCC
Q 027417 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-------TFDSIGRWLNEL----HTHSDMNVVTILVGNKS 129 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i----~~~~~~~~p~ivv~nK~ 129 (223)
..+.++++|++|+...++-|...+....++|+|...+.-. +-+.++.-+..+ ...+-..+.+|+.+||-
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 3467899999999999999999999999999999987521 122233222222 22222357789999999
Q ss_pred CCC
Q 027417 130 DLK 132 (223)
Q Consensus 130 Dl~ 132 (223)
|+.
T Consensus 280 Dll 282 (379)
T KOG0099|consen 280 DLL 282 (379)
T ss_pred HHH
Confidence 973
No 392
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=3.3e-06 Score=66.61 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=96.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCC---CC--CCCccceeEe-----E------------------------EEEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF---YP--NSKSTIGVEF-----Q------------------------TQKM 56 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~---~~--~~~~~~~~~~-----~------------------------~~~~ 56 (223)
.+-.++|.-+|+...||||++.++.+-.. .. +..-|+..-+ + .+..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 45679999999999999999998865210 00 0000000000 0 0000
Q ss_pred E-ECC---EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----HhhHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027417 57 D-ING---KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----RQTFDSIGRWLNELHTHSDMNVVTILVGNK 128 (223)
Q Consensus 57 ~-~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 128 (223)
. ..+ --..+.+.|+||++-.......-..-.|+.++++..+. |++-+.+... ++-. -++++++-||
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~----LkhiiilQNK 188 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK----LKHIIILQNK 188 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh----hceEEEEech
Confidence 0 000 01236699999998765555444445677777777765 3333332211 1111 2568889999
Q ss_pred CCCCCCccc--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 129 SDLKDAREV--TTAEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 129 ~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+|+..+.+. ..++++.|... .++|++++||--+.|++-+.+.|+.++
T Consensus 189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 999864332 23445555543 367899999999999999999988655
No 393
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=1.1e-05 Score=62.99 Aligned_cols=61 Identities=21% Similarity=0.461 Sum_probs=44.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
.-.++|+-+|..|.||||||+.|.+..+...+. +............-.+..+.+++.||.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 346999999999999999999999987765443 2222222333334466778899999998
No 394
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.07 E-value=4e-05 Score=64.37 Aligned_cols=84 Identities=14% Similarity=0.005 Sum_probs=46.3
Q ss_pred EEEEEEEeCCCchhhhchh-H---hh--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 62 EVKAQIWDTAGQERFRAVT-S---AY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~-~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
.+.+.|+||+|........ . .+ ...++-+++|+|.+....- ......+... -.+.-+|+||.|....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~---~~~~g~IlTKlD~~ar- 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS---VDVGSVIITKLDGHAK- 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc---cCCcEEEEECccCCCC-
Confidence 4678899999954432211 1 11 2357889999998754322 1122222221 2356788999996531
Q ss_pred ccCHHHHHHHHHHcCCeEEE
Q 027417 136 EVTTAEGKALAEAQGLFFME 155 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~ 155 (223)
.=.+.......+.|+..
T Consensus 255 ---gG~aLs~~~~t~~PI~f 271 (429)
T TIGR01425 255 ---GGGALSAVAATKSPIIF 271 (429)
T ss_pred ---ccHHhhhHHHHCCCeEE
Confidence 22233444555666444
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=6.5e-05 Score=62.08 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-C--CCccceeEeE------------------EEEEEE---------CCEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYP-N--SKSTIGVEFQ------------------TQKMDI---------NGKEV 63 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-~--~~~~~~~~~~------------------~~~~~~---------~~~~~ 63 (223)
.-.++|+|++|+||||++..|....... . .......+.+ ...... .-...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3578899999999999999887532111 0 0000011110 000000 01234
Q ss_pred EEEEEeCCCchhhhchhHh---hh---cCCCEEEEEEECCC-HhhHHHHHHHHHHHhhcCCC--CCcEEEEEeCCCCCCC
Q 027417 64 KAQIWDTAGQERFRAVTSA---YY---RGAVGALLVYDISR-RQTFDSIGRWLNELHTHSDM--NVVTILVGNKSDLKDA 134 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~~~---~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~~ 134 (223)
.+.|+||+|.......... .+ ...+-.++|++.+. ......+..-+......... ..+--+|.||.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 6789999995543222111 12 23345678888876 34444443322322111000 013357789999653
Q ss_pred cccCHHHHHHHHHHcCCeEEEEc
Q 027417 135 REVTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~S 157 (223)
..=.+..++...+.|+..++
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEe
Confidence 34445666677788855544
No 396
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.02 E-value=2.3e-05 Score=57.74 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=66.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDT-AGQ--------------------- 73 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~G~--------------------- 73 (223)
+|+|.|++|+|||||+++++...... ..+..|+ ....+.-++..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~Gf--~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGGF--YTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEEE--EEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccceE--EeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987632211 1122232 2233334555555666666 331
Q ss_pred -hhhhc----hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCC-CCCCCcccCHHHHHHHHH
Q 027417 74 -ERFRA----VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS-DLKDAREVTTAEGKALAE 147 (223)
Q Consensus 74 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~ 147 (223)
+.+.. .....+..+| ++++|---+..+. ...|.+.+....+.++|++.++.+. +.. ....+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~~--------~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDNP--------FLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--SC--------CHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCcH--------HHHHHHh
Confidence 11111 1112224556 6778854432111 1234444444444568887777655 321 2344556
Q ss_pred HcCCeEEEEccCCCCCH
Q 027417 148 AQGLFFMETSALDSSNV 164 (223)
Q Consensus 148 ~~~~~~~~~Sa~~~~~i 164 (223)
..++.+++++..+...+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 67788999877765554
No 397
>PRK13695 putative NTPase; Provisional
Probab=98.01 E-value=0.00017 Score=53.42 Aligned_cols=77 Identities=9% Similarity=0.061 Sum_probs=43.4
Q ss_pred hhcCCCEEEEEEEC---CCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417 83 YYRGAVGALLVYDI---SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL 159 (223)
Q Consensus 83 ~~~~~d~~i~v~d~---~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (223)
.+..+++ +++|- .+..+ ..+.+.+......+.|++++.+|.... ..+..+....+..++++
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~--- 156 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL--- 156 (174)
T ss_pred ccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---
Confidence 3456775 68883 22222 223333333333468999999874321 22344555567777777
Q ss_pred CCCCHHHHHHHHHHHH
Q 027417 160 DSSNVTAAFQTVVTEI 175 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~ 175 (223)
+.+|-+++.+.++..+
T Consensus 157 ~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 TPENRDSLPFEILNRL 172 (174)
T ss_pred cchhhhhHHHHHHHHH
Confidence 5556668888777644
No 398
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=5.6e-05 Score=63.60 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=113.6
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCC------------CCCC--CccceeEeEEEEEE----------------E
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEF------------YPNS--KSTIGVEFQTQKMD----------------I 58 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~------------~~~~--~~~~~~~~~~~~~~----------------~ 58 (223)
.......++.++-+...|||||-+.|....- .... .+.-++++...-+. -
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 3455677889999999999999999875311 1100 01112222222111 1
Q ss_pred CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-Cccc
Q 027417 59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-AREV 137 (223)
Q Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~ 137 (223)
++..+-+.++|.||+-.|.+-..+.++-.|+.++|+|..+.--.+.-.-+.+.+.+ .+..++++||.|..- +-++
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~ 169 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQL 169 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcC
Confidence 34567799999999999999999999999999999998875333322222223332 355688999999531 2345
Q ss_pred CHHHHHHHHH----HcCCe--------------------EEEEccCCCCCHHHHHHHHHHHHHHHHh-hhhhhhHhhhhc
Q 027417 138 TTAEGKALAE----AQGLF--------------------FMETSALDSSNVTAAFQTVVTEIYNILS-RKVMISQELKQK 192 (223)
Q Consensus 138 ~~~~~~~~~~----~~~~~--------------------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 192 (223)
+.++..+... ..++. +-.+|..+|+.+. +...++...+... ........++-.
T Consensus 170 ~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFT--lrQFa~~Y~~KF~~~~~kmm~~LWg~ 247 (842)
T KOG0469|consen 170 SQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFT--LRQFAEMYAKKFGIDVRKMMNRLWGD 247 (842)
T ss_pred CHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhh--HHHHHHHHHHHhCCcHHHHHHHhhcc
Confidence 5555443322 12211 1225666766643 2222333333322 222334455555
Q ss_pred cCCCCCCceeeecCCCccc
Q 027417 193 DSSSFNGKTVVLEGEKKEA 211 (223)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~ 211 (223)
.-.-+..++.+...+....
T Consensus 248 ~~f~~ktkk~~~s~t~~~g 266 (842)
T KOG0469|consen 248 NFFNPKTKKWSKSATDAEG 266 (842)
T ss_pred cccCccCCccccccccccc
Confidence 5566666666666666555
No 399
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.99 E-value=7.6e-05 Score=56.46 Aligned_cols=85 Identities=16% Similarity=0.068 Sum_probs=49.2
Q ss_pred EEEEEEeCCCchhhhch----hHhh--hcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 63 VKAQIWDTAGQERFRAV----TSAY--YRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
+.+.|+||+|....... +..+ ....+-+++|++.+... ..+.+...+..+ .+--+|.||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------GIDGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------STCEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------cCceEEEEeecCCC--
Confidence 45789999995443221 1111 12577888899988753 333333333221 12357799999653
Q ss_pred ccCHHHHHHHHHHcCCeEEEEcc
Q 027417 136 EVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..-.+..++...+.|+-.++.
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEES
T ss_pred --CcccceeHHHHhCCCeEEEEC
Confidence 334456677788888665553
No 400
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.98 E-value=2.3e-05 Score=57.54 Aligned_cols=145 Identities=20% Similarity=0.279 Sum_probs=83.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC---------chhhhchhHhhhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG---------QERFRAVTSAYYRG 86 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G---------~~~~~~~~~~~~~~ 86 (223)
-|.|+|.+|||||||++.+.-.+.+. ...+.++++.+.+. -|-.| .++.++...+.+.+
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~-----------~G~I~v~geei~~k-~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~ 101 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPS-----------AGSIRVNGEEIRLK-RDKDGQLKPADKRQLQRLRTRLGMVFQH 101 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCC-----------CceEEECCeEEEee-eCCCCCeeeCCHHHHHHHHHHhhHhhhh
Confidence 47899999999999999876533221 12233444443321 23222 11222222222322
Q ss_pred C-------------CEEEEEEECCCHhhHHHHHHHHHHHhhcCCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027417 87 A-------------VGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF 152 (223)
Q Consensus 87 ~-------------d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (223)
. .+-+.|+.++..+..+....++..+.-+... .-|.. +....+....-++.++.+..+.
T Consensus 102 FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~-------LSGGQQQR~aIARaLameP~vm 174 (256)
T COG4598 102 FNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH-------LSGGQQQRVAIARALAMEPEVM 174 (256)
T ss_pred cchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccc-------cCchHHHHHHHHHHHhcCCceE
Confidence 2 2235566666666677777777665332111 22221 2333445566677777777777
Q ss_pred EEE--EccCCCCCHHHHHHHHHHHHHHHH
Q 027417 153 FME--TSALDSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 153 ~~~--~Sa~~~~~i~~~~~~l~~~~~~~~ 179 (223)
+|. +||.+.+-+.+++..+...+.+-+
T Consensus 175 LFDEPTSALDPElVgEVLkv~~~LAeEgr 203 (256)
T COG4598 175 LFDEPTSALDPELVGEVLKVMQDLAEEGR 203 (256)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 664 899999999999988877665443
No 401
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.98 E-value=1.1e-05 Score=67.73 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=44.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
...+.|.+||.|+|||||+||+|.+.+... ...|.|-+..-.++.+.. .+.|.|+||.
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 336999999999999999999999987643 334446666666666654 4559999993
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.97 E-value=6.2e-05 Score=55.73 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=45.7
Q ss_pred EEEEEEEeCCCchhhh----chhHhh--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 62 EVKAQIWDTAGQERFR----AVTSAY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
.+.+.++|++|..... ...... ....+.+++|+|...... . ..+...+..... ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~-~~~~~~~~~~~~---~~~viltk~D~~~~- 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--A-VNQAKAFNEALG---ITGVILTKLDGDAR- 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--H-HHHHHHHHhhCC---CCEEEEECCcCCCC-
Confidence 3457789999964221 111111 134899999999865432 2 223333322222 35677899997642
Q ss_pred ccCHHHHHHHHHHcCCeEE
Q 027417 136 EVTTAEGKALAEAQGLFFM 154 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (223)
...+...+...++|+.
T Consensus 155 ---~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 155 ---GGAALSIRAVTGKPIK 170 (173)
T ss_pred ---cchhhhhHHHHCcCeE
Confidence 2223336666677743
No 403
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=2.3e-05 Score=64.04 Aligned_cols=156 Identities=19% Similarity=0.125 Sum_probs=95.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCccceeEeEEEEEEEC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF-------------------------------YPNSKSTIGVEFQTQKMDIN 59 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (223)
....++++++|+..+||||+-..++...- ..... .|-+.......+.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~--kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERD--KGKTVEVGRAYFE 153 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhh--ccceeeeeeEEEE
Confidence 45679999999999999998776643100 00111 1222333333344
Q ss_pred CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH---hhHHHHHH--HHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417 60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR---QTFDSIGR--WLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~--~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
-....+++.|+||+..|-.....-..++|+-++|+++... ..|+.--. ....+... ..-...|+++||+|-...
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTV 232 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCcc
Confidence 4456788999999999988887777899999999988542 22433211 11112111 224667888999997642
Q ss_pred --cccCHHH----HHHHHHHcC------CeEEEEccCCCCCHHHHHH
Q 027417 135 --REVTTAE----GKALAEAQG------LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 135 --~~~~~~~----~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 169 (223)
..-.+++ ...|....+ ..|+++|..+|.++.+...
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1112222 222333322 3489999999999987664
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00041 Score=58.32 Aligned_cols=133 Identities=16% Similarity=0.118 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccce-----------------------eEeEEEEEE-------ECCEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG-----------------------VEFQTQKMD-------INGKEV 63 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~-----------------------~~~~~~~~~-------~~~~~~ 63 (223)
.-.|+++|+.|+||||++..|.+...........+ .......-. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999998765321100000000 000000000 000223
Q ss_pred EEEEEeCCCchhhhc----hhHhhh--cCCCEEEEEEECCC-HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 64 KAQIWDTAGQERFRA----VTSAYY--RGAVGALLVYDISR-RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
.+.++||+|...... ....+. ....-.++|+|.+. ...+.. ++..+.. -.+--+|.||.|...
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~---~~~~f~~----~~~~~~I~TKlDEt~--- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE---VISAYQG----HGIHGCIITKVDEAA--- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH---HHHHhcC----CCCCEEEEEeeeCCC---
Confidence 567999999544221 122221 22445778888874 333333 3333221 123467899999653
Q ss_pred cCHHHHHHHHHHcCCeEEEEc
Q 027417 137 VTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~S 157 (223)
..-.+..++...+.|+..++
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt 360 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT 360 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE
Confidence 34445666777788866654
No 405
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.81 E-value=3.6e-05 Score=65.02 Aligned_cols=85 Identities=16% Similarity=0.045 Sum_probs=47.8
Q ss_pred EEEEEEeCCCchhhhchh------HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 63 VKAQIWDTAGQERFRAVT------SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
..+.|+||+|........ ......+|.+++|+|.+... ........+.... ...-+|.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a--- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA--- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence 367899999955432211 11234688999999987742 2222223332211 12357889999643
Q ss_pred cCHHHHHHHHHHcCCeEEEEc
Q 027417 137 VTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~S 157 (223)
..=.+..+....+.|+..++
T Consensus 247 -~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 -KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred -cccHHHHHHHHHCcCEEEEe
Confidence 22334555666777754443
No 406
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00042 Score=57.54 Aligned_cols=134 Identities=18% Similarity=0.141 Sum_probs=70.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCc--------------cceeEeEEEEE---------EEC-CEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYP-------NSKS--------------TIGVEFQTQKM---------DIN-GKE 62 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-------~~~~--------------~~~~~~~~~~~---------~~~-~~~ 62 (223)
...|+|+|+.||||||++..|....... ..++ ..+.......- ... ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3689999999999999999885421100 0000 00111110000 000 013
Q ss_pred EEEEEEeCCCchhhhch----hHhhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 63 VKAQIWDTAGQERFRAV----TSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
+.+.|+||+|....... ....+ ...+.+++|+|.+... ..+..++..+.. -.+--+|.||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCC---
Confidence 57889999995432111 12222 2456788888875331 222333333332 123468899999653
Q ss_pred cCHHHHHHHHHHcCCeEEEEc
Q 027417 137 VTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~S 157 (223)
..=.+..++...+.|+..++
T Consensus 392 -k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23445566677788854443
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00093 Score=57.52 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCc--------------cceeEeEEEEEE------E-CCEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYP---------NSKS--------------TIGVEFQTQKMD------I-NGKEV 63 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~---------~~~~--------------~~~~~~~~~~~~------~-~~~~~ 63 (223)
.-.|+|+|+.|+||||++..|...-... ..+. ..+..+....-. + .-..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4578999999999999998876421100 0000 001101000000 0 01246
Q ss_pred EEEEEeCCCchhhhchhHh---hhc--CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417 64 KAQIWDTAGQERFRAVTSA---YYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (223)
.+.|+||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|... .
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG----R 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----c
Confidence 7889999995433221110 011 12245667776642 3333333333322 245679999999643 3
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 027417 139 TAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~Sa 158 (223)
.-.+..+....+.++..++.
T Consensus 500 lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred hhHHHHHHHHhCCCEEEEeC
Confidence 45666677778888666553
No 408
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.76 E-value=0.00032 Score=55.91 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=64.4
Q ss_pred hcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417 84 YRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
..+.|-+|+++.+.+|+ +...+..++-..... ++..|+++||+|+....+...++........+.+++.+|++++.
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~ 153 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGD 153 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcc
Confidence 34577778888888775 455566665554332 57788889999998654433345566677789999999999999
Q ss_pred CHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTE 174 (223)
Q Consensus 163 ~i~~~~~~l~~~ 174 (223)
++.++.+.+..+
T Consensus 154 ~~~~l~~~l~~~ 165 (301)
T COG1162 154 GLEELAELLAGK 165 (301)
T ss_pred cHHHHHHHhcCC
Confidence 999999888544
No 409
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.75 E-value=0.00025 Score=59.83 Aligned_cols=86 Identities=19% Similarity=0.049 Sum_probs=49.1
Q ss_pred EEEEEEEeCCCchhhhch-hH---h--hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 62 EVKAQIWDTAGQERFRAV-TS---A--YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~-~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
.+.+.|+||+|....... .. . ....++.+++|+|..... ....+...+.... ...-+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~-- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA-- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc--
Confidence 356889999995432211 11 1 123578889999987542 3333333333222 12467799999542
Q ss_pred ccCHHHHHHHHHHcCCeEEEEc
Q 027417 136 EVTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~S 157 (223)
..-.+..++...++|+..+.
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~ 273 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIG 273 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEe
Confidence 22236667777888855543
No 410
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.75 E-value=0.00039 Score=53.21 Aligned_cols=62 Identities=26% Similarity=0.182 Sum_probs=38.2
Q ss_pred EEEEeC-CCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 65 AQIWDT-AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 65 ~~l~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
+.++|| +|.+++.+- ..+.+|.+|+|+|.+-. ++...++..+...... =.++.+|+||.|..
T Consensus 136 ~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhhccc---cccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 556666 455555432 34789999999999753 3333333332222221 27899999999954
No 411
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.71 E-value=0.00018 Score=51.90 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=35.6
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 130 (223)
.+.+.|+||+|..... ..++..+|-+|++...+-.+.+.-+. + .... ..-+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k-~--~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK-A--GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh-h--hHhh-----hcCEEEEeCCC
Confidence 4678899998854322 34778899888888887333322211 1 1122 22378889987
No 412
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.70 E-value=0.0011 Score=54.02 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=56.6
Q ss_pred EEEEEEeCCCchhhhchhHhhhc--------CCCEEEEEEECCCHhh-HHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYR--------GAVGALLVYDISRRQT-FDSIGR-WLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
+...++++.|......+...+.. ..|++|-|+|+.+-.. ...+.. ...++. ..=++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCC
Confidence 45668899886555444443332 4677899999987443 222222 222222 2238999999999
Q ss_pred CCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHH
Q 027417 133 DAREVTTAEGKALAEAQ--GLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 133 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~ 169 (223)
++.+ .+..+...... .++++.++. ...+..+++.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 7543 34444444444 456888777 3344444443
No 413
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.68 E-value=3.9e-05 Score=62.64 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=42.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
.+.++|.|+|-|++||||+||+|..+..-.. ....|.+..-..+..+. .+.|+|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCc
Confidence 6789999999999999999999998765332 22335555555555543 566999999
No 414
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.67 E-value=0.00017 Score=42.49 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=30.2
Q ss_pred cCCCEEEEEEECCCH--hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417 85 RGAVGALLVYDISRR--QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 85 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 130 (223)
.-.+++++++|++.. .+.+.-...+..++.... ++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 347899999999984 456666777788877765 699999999998
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.66 E-value=0.0011 Score=54.99 Aligned_cols=133 Identities=15% Similarity=0.195 Sum_probs=70.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccce---eEeEEE-----------------EEEEC----------CEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG---VEFQTQ-----------------KMDIN----------GKEV 63 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~---~~~~~~-----------------~~~~~----------~~~~ 63 (223)
.-.|+++||.||||||-+..|.............+ ++.+.. .+-.+ -..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56789999999999999887766543111111111 111110 00000 1234
Q ss_pred EEEEEeCCCchhhhchh----HhhhcC--CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417 64 KAQIWDTAGQERFRAVT----SAYYRG--AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 137 (223)
.+.|+||.|...++... ..++.. ..-+.+|++++.. .+.+...+..+... ..--+|.||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PIDGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----CcceeEEEcccccC----
Confidence 68899999966554432 333332 3345566676653 33444444443322 11247789999653
Q ss_pred CHHHHHHHHHHcCCeEEEE
Q 027417 138 TTAEGKALAEAQGLFFMET 156 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (223)
+.=..-.++.+.+.|+-.+
T Consensus 353 s~G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYV 371 (407)
T ss_pred chhHHHHHHHHhCCCeEEE
Confidence 3334445556667764433
No 416
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.65 E-value=0.00046 Score=46.44 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=49.2
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 17 VVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 17 i~i~G-~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
|.+.| ..|+||||+...+...-.. ...+. ..+..+ ..+.+.++|+|+.... .....+..+|.+|++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56677 5689999998766542211 11111 111111 1167789999985433 23366778999999998
Q ss_pred CCCHhhHHHHHHHHH
Q 027417 96 ISRRQTFDSIGRWLN 110 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~ 110 (223)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445666555554
No 417
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.65 E-value=0.004 Score=45.54 Aligned_cols=142 Identities=10% Similarity=0.075 Sum_probs=96.1
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+......|+++|..+.++..|.+++....- ... ..+.... . +-+ |. .. ...-...|.
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~--------~~~---l~Vh~a~-s----LPL-p~--e~----~~lRprIDl 67 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDK--------EFK---LKVHLAK-S----LPL-PS--EN----NNLRPRIDL 67 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhcc--------cee---EEEEEec-c----CCC-cc--cc----cCCCceeEE
Confidence 345578999999999999999999986211 111 1111100 0 111 10 01 111246899
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
++|++|.....|++.++.-+..+....-.+ .+.++++-....+...+...++.+++..+++|++.+.-.+..+...+-.
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 999999999999999988887774432223 3566666677666677899999999999999999998888766666665
Q ss_pred HHHHHH
Q 027417 170 TVVTEI 175 (223)
Q Consensus 170 ~l~~~~ 175 (223)
.|++.+
T Consensus 147 RLL~~l 152 (176)
T PF11111_consen 147 RLLRML 152 (176)
T ss_pred HHHHHH
Confidence 555433
No 418
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.65 E-value=0.0012 Score=53.71 Aligned_cols=85 Identities=6% Similarity=0.044 Sum_probs=47.7
Q ss_pred EEEEEEeCCCchhhhchhHhhhc--------CCCEEEEEEECCCHhhH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYR--------GAVGALLVYDISRRQTF-DSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
....++++.|......+...+.. ..+.+|.|+|+.+-... +.......++.. .=+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 44568899997665555544321 25789999999763221 111111222221 2388999999886
Q ss_pred CcccCHHHHHHHHHHcC--CeEEEEc
Q 027417 134 AREVTTAEGKALAEAQG--LFFMETS 157 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~~--~~~~~~S 157 (223)
+. +...+..+..+ ++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 34444444443 4566554
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=97.62 E-value=0.00048 Score=58.20 Aligned_cols=86 Identities=17% Similarity=0.056 Sum_probs=47.7
Q ss_pred EEEEEEEeCCCchhhhc-hhH---hh--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 62 EVKAQIWDTAGQERFRA-VTS---AY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
.+.+.|+||+|...... +.. .+ ...++.+++|+|..... .+......+.... ...-+|.||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~-- 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDA-- 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcc--
Confidence 35688999999543211 111 11 12577789999987532 2223333333221 12357789999542
Q ss_pred ccCHHHHHHHHHHcCCeEEEEc
Q 027417 136 EVTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~S 157 (223)
..-.+.......++|+..++
T Consensus 255 --rgG~alsi~~~~~~PI~fig 274 (433)
T PRK10867 255 --RGGAALSIRAVTGKPIKFIG 274 (433)
T ss_pred --cccHHHHHHHHHCcCEEEEe
Confidence 12235666777788855543
No 420
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.61 E-value=0.0006 Score=48.18 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~ 38 (223)
...++|.|++|+|||+|++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999988743
No 421
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.59 E-value=0.00033 Score=52.17 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=43.4
Q ss_pred EEEEEEeCCCchhhhch--h---HhhhcCCCEEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 63 VKAQIWDTAGQERFRAV--T---SAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~--~---~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
....++++.|......+ . ....-..+.+|.|+|+.+-....... .+..++. .. =++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-~A-----DvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-FA-----DVIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-T------SEEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch-hc-----CEEEEeccccCChh-
Confidence 45668888885554444 1 11124578899999997753333332 2333332 22 38999999987643
Q ss_pred cCHHHHHHHHHHc
Q 027417 137 VTTAEGKALAEAQ 149 (223)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (223)
...+..++..+..
T Consensus 158 ~~i~~~~~~ir~l 170 (178)
T PF02492_consen 158 QKIERVREMIREL 170 (178)
T ss_dssp --HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 2224444444444
No 422
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.59 E-value=0.00013 Score=58.01 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=39.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCccceeEeEEEE-EEECCEEEEEEEEeCCCc
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPN----SKSTIGVEFQTQK-MDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~G~ 73 (223)
.+...+|+|+|-||+|||||+|++........ ..+-.|++..... +.+.... .+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 45679999999999999999998865322211 1122244444433 4444333 4779999994
No 423
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.58 E-value=0.00042 Score=49.45 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=59.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC
Q 027417 18 VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 18 ~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 97 (223)
+.-|..|+|||++.-.+...-. .......-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3557899999998655543111 0000000011000 001111677899999743 333456788999999999986
Q ss_pred CHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 98 RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 98 ~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
. .++......++.+.... ...++.+|.|+.+..
T Consensus 78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 4 34444444444443332 245678999998744
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=0.00088 Score=56.71 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=48.1
Q ss_pred EEEEEEeCCCchhhh----chhHhhhc---CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 63 VKAQIWDTAGQERFR----AVTSAYYR---GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
+.+.|+||+|..... .....++. ...-+++|++.+-.. ..+...+..+... + +--+|.||.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 567899999964432 12222333 234567778875431 2222222222211 1 2368899999653
Q ss_pred ccCHHHHHHHHHHcCCeEEEEcc
Q 027417 136 EVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..-.+..+....+.|+..++.
T Consensus 372 --~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEeC
Confidence 233567777888988666553
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0015 Score=54.00 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=47.0
Q ss_pred EEEEEEeCCCchhhhch----hHhhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 63 VKAQIWDTAGQERFRAV----TSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
+.+.|+||+|....... ...+. ...+.+++|++... ....+...+..+. . -.+--+|.||.|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~---~-l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA---E-IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC---c-CCCCEEEEEcccCCC---
Confidence 57889999996443221 11222 24466667776532 2223333333321 1 123468899999653
Q ss_pred cCHHHHHHHHHHcCCeEEEEcc
Q 027417 137 VTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..=.+..++...+.|+..++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEec
Confidence 234455667777888655543
No 426
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.49 E-value=0.0021 Score=46.07 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999988753
No 427
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0024 Score=57.39 Aligned_cols=135 Identities=14% Similarity=0.071 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCccceeEeEE---------------EEEE-E-----------CCEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPN---SKSTIGVEFQT---------------QKMD-I-----------NGKEVK 64 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~---------------~~~~-~-----------~~~~~~ 64 (223)
--|+|+|+.||||||.+..|.+...... .......+.+. ..+. . .-..+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 3578999999999999998876431110 00000011000 0000 0 012335
Q ss_pred EEEEeCCCchhhhch----hHhh--hcCCCEEEEEEECCC-HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417 65 AQIWDTAGQERFRAV----TSAY--YRGAVGALLVYDISR-RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 137 (223)
+.|+||+|....... .... ....+-.++|+|.+. ...+..+..-+... .. -.+-=+|.||.|...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~-~~i~glIlTKLDEt~---- 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AG-EDVDGCIITKLDEAT---- 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---cc-CCCCEEEEeccCCCC----
Confidence 789999994332211 1111 124556788999875 33444443333221 10 013467899999653
Q ss_pred CHHHHHHHHHHcCCeEEEEc
Q 027417 138 TTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~S 157 (223)
..=.+..+....++|+..++
T Consensus 338 ~~G~iL~i~~~~~lPI~yit 357 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVS 357 (767)
T ss_pred CccHHHHHHHHHCCCeEEEe
Confidence 23445566677788866554
No 428
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.47 E-value=0.00011 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 429
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.47 E-value=0.0014 Score=42.93 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=43.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-hHhhhcCCCEEEEEEE
Q 027417 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-TSAYYRGAVGALLVYD 95 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 95 (223)
+++.|..|+||||+...+...-... +... ..++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GKRV----LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CCeE----EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999988776532211 1111 1112 6669999975432221 1455567899999998
Q ss_pred CCCH
Q 027417 96 ISRR 99 (223)
Q Consensus 96 ~~~~ 99 (223)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 8754
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.47 E-value=0.00013 Score=44.06 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
..+|.|+.|||||||++++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998764
No 431
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.0001 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 432
>PRK08118 topology modulation protein; Reviewed
Probab=97.43 E-value=0.00012 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988764
No 433
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.43 E-value=0.0011 Score=53.04 Aligned_cols=105 Identities=16% Similarity=0.263 Sum_probs=61.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch---------------
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE--------------- 74 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------------- 74 (223)
....-..++|+|++|.|||++++++...... ..+.. + ..+.+.++.+|...
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 3445578999999999999999999874432 22211 1 11233344444311
Q ss_pred ---------hhhchhHhhhcCCCEEEEEEECCCH---hhHHHHHHHHHHHhhc-CCCCCcEEEEEeC
Q 027417 75 ---------RFRAVTSAYYRGAVGALLVYDISRR---QTFDSIGRWLNELHTH-SDMNVVTILVGNK 128 (223)
Q Consensus 75 ---------~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK 128 (223)
.........++...+=++++|--+. .+....+..++.++.. ...++|+|.||+.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1122223455677777889996652 2344444555555444 2347999999874
No 434
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0032 Score=52.89 Aligned_cols=141 Identities=19% Similarity=0.194 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CCC-------CCCc--------------cceeEeEEEE-E-----EECCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE-FYP-------NSKS--------------TIGVEFQTQK-M-----DINGKEVKAQ 66 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~-~~~-------~~~~--------------~~~~~~~~~~-~-----~~~~~~~~~~ 66 (223)
.-++++|++||||||++..|.... ... ..+. ..+....... . ......+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999998886421 100 0000 0011111000 0 0011245678
Q ss_pred EEeCCCchhhh-ch---hHhhhc-----CCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 67 IWDTAGQERFR-AV---TSAYYR-----GAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 67 l~D~~G~~~~~-~~---~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
++||+|..... .. +..++. ...-.++|+|.+... .... .+..+.. --+--+|.||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~---~~~~f~~----~~~~glIlTKLDEt~--- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT---VLKAYES----LNYRRILLTKLDEAD--- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH---HHHHhcC----CCCCEEEEEcccCCC---
Confidence 99999954321 11 111221 234577888887643 3332 2222211 123468899999653
Q ss_pred cCHHHHHHHHHHcCCeEEEEcc--CCCCCHHH
Q 027417 137 VTTAEGKALAEAQGLFFMETSA--LDSSNVTA 166 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~ 166 (223)
..=.+..++...+.|+..++. .=++++..
T Consensus 374 -~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~ 404 (432)
T PRK12724 374 -FLGSFLELADTYSKSFTYLSVGQEVPFDILN 404 (432)
T ss_pred -CccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence 233355666777888655543 33344443
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.39 E-value=0.00015 Score=53.69 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
+|+|+|++|||||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999988653
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.36 E-value=0.00015 Score=51.65 Aligned_cols=20 Identities=40% Similarity=0.694 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 027417 17 VVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~ 36 (223)
|+++|+||||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999884
No 437
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.34 E-value=0.004 Score=53.38 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-C--CccceeEeEE---------------EEEE-E-----------CCEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPN-S--KSTIGVEFQT---------------QKMD-I-----------NGKEVK 64 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~-~--~~~~~~~~~~---------------~~~~-~-----------~~~~~~ 64 (223)
--++++|+.||||||++..|.+...... . ......+.+. .... . .-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 4589999999999999998875321110 0 0000000000 0000 0 001234
Q ss_pred EEEEeCCCchhhhch---hHhhhcC---CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417 65 AQIWDTAGQERFRAV---TSAYYRG---AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (223)
..++||+|....... ....+.. ..-.++|+|.+... ..+......+.. ....-+|+||.|... .
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~----~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA----S 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc----c
Confidence 679999994432211 1111111 22367888886532 222222222211 233467789999553 3
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417 139 TAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
.-.+..+....++|+..++. |.+|
T Consensus 407 ~G~~l~i~~~~~lPI~yvt~--GQ~V 430 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVSN--GQRV 430 (484)
T ss_pred chHHHHHHHHHCCCeEEEec--CCCC
Confidence 44556677778888665543 4444
No 438
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0039 Score=52.11 Aligned_cols=134 Identities=12% Similarity=0.070 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCC--------------------ccceeEeEEEEEE-------ECCE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYP-----NSK--------------------STIGVEFQTQKMD-------INGK 61 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-----~~~--------------------~~~~~~~~~~~~~-------~~~~ 61 (223)
...|+++|++|+||||.+..|....... ... ...+..+...... -.-.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4578999999999999998775421100 000 0001111110000 0012
Q ss_pred EEEEEEEeCCCchhhhc----hhHhhhcC---CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417 62 EVKAQIWDTAGQERFRA----VTSAYYRG---AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
.+.+.++||+|...... -....+.. ..-.++|+|++.. .+.+...+..+.. -.+--+|.||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~----~~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP----FSYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeccCCC-
Confidence 45688999999544221 11122221 2257889998875 2233333333221 123468899999653
Q ss_pred cccCHHHHHHHHHHcCCeEEEEc
Q 027417 135 REVTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~S 157 (223)
..=.+..++...+.|+..++
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit 346 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT 346 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe
Confidence 23445556677788865554
No 439
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.30 E-value=0.00042 Score=52.17 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-++|+|+.||||||+++.+..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 4578999999999999998864
No 440
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.30 E-value=0.005 Score=48.93 Aligned_cols=134 Identities=18% Similarity=0.159 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-------CC--C------------ccceeEeEEEEEE---------E-CCEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYP-------NS--K------------STIGVEFQTQKMD---------I-NGKE 62 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-------~~--~------------~~~~~~~~~~~~~---------~-~~~~ 62 (223)
.-+++++|++|+||||++..+....... .. . ...+.......-. . ....
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3689999999999999988775421100 00 0 0011111110000 0 0124
Q ss_pred EEEEEEeCCCchhhhc-h---hHhhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 63 VKAQIWDTAGQERFRA-V---TSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~-~---~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
+.+.++||+|...... . +...+ ...+-+++|+|.+... +.+..++..+.. -.+--+|.||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC---
Confidence 5788999999553211 1 11121 2456788999986421 222333333322 133468899999664
Q ss_pred cCHHHHHHHHHHcCCeEEEEc
Q 027417 137 VTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~S 157 (223)
..-.+..++...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23345566667788855544
No 441
>PRK01889 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.00029 Score=58.34 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEF 39 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~ 39 (223)
-+++|+|.+|+|||||++.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999987543
No 442
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.25 E-value=0.00031 Score=43.66 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988864
No 443
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.24 E-value=0.0033 Score=46.75 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~ 38 (223)
=.++|+|+.|+|||||++.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 367899999999999999888743
No 444
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00034 Score=54.07 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027417 17 VVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~ 38 (223)
|+|+|++|+|||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999887743
No 445
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.20 E-value=0.00022 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.20 E-value=0.0004 Score=53.35 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-|+|+|++|||||||++-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999977663
No 447
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0012 Score=54.22 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---------------------ccceeEeEEEEE-------------EECC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK---------------------STIGVEFQTQKM-------------DING 60 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~-------------~~~~ 60 (223)
--|+++|-.|+||||.+-.|....-...+. .-.++.++.... .+..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 457899999999999987764321101000 000122222111 1123
Q ss_pred EEEEEEEEeCCCchhh-hchhHh-----hhcCCCEEEEEEECCCHhhH-HHHHHHHHH
Q 027417 61 KEVKAQIWDTAGQERF-RAVTSA-----YYRGAVGALLVYDISRRQTF-DSIGRWLNE 111 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~-~~~~~~-----~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~ 111 (223)
+.+.+.|.||+|.... ..+... -.-.+|-+|+|.|.+-...- +..+.+-..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 5678999999994432 222221 12468999999999986553 333444443
No 448
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.16 E-value=0.00015 Score=59.31 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=51.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh--hchhHhhhcCCC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF--RAVTSAYYRGAV 88 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~~~~~~~~~d 88 (223)
+...|-|.++|.|++||||+||+|....+-.... ..|-+....++..- ..+.|+|+||.--. .+-....++
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivLk--- 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVLK--- 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHhh---
Confidence 3556999999999999999999998876543222 22322222222212 24569999994322 222333333
Q ss_pred EEEEEEECCCHhh
Q 027417 89 GALLVYDISRRQT 101 (223)
Q Consensus 89 ~~i~v~d~~~~~s 101 (223)
+++=|=.+.+++.
T Consensus 377 GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 GVVRVENVKNPED 389 (572)
T ss_pred ceeeeeecCCHHH
Confidence 5566777777654
No 449
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00023 Score=52.54 Aligned_cols=24 Identities=42% Similarity=0.646 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.-++|.||+|||||||+++|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999765
No 450
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.15 E-value=0.00038 Score=49.26 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5789999999999999988874
No 451
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.15 E-value=0.0036 Score=52.90 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=33.1
Q ss_pred hhchhHhhhcCCCEEEEEEEC-CCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417 76 FRAVTSAYYRGAVGALLVYDI-SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 130 (223)
.-.+....+++++++ ++|- +.--+..++..++..+......++-+|+|-.|.+
T Consensus 148 RVEIlKaLyr~a~iL--ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 148 RVEILKALYRGARLL--ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHHHhcCCCEE--EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 444566677888855 4442 2223445566666666666666788888888766
No 452
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.14 E-value=0.004 Score=42.16 Aligned_cols=100 Identities=19% Similarity=0.093 Sum_probs=54.9
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH
Q 027417 20 IGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR 99 (223)
Q Consensus 20 ~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 99 (223)
=+..|+||||+...|...-.........-.+.... .. ..+.++|+|+.... .....+..+|.+|++.+.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~---~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FG---DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CC---CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence 34578999998765543211110111111111110 01 16679999975432 33456788999999887754
Q ss_pred hhHHHHHHHHHHHhhcCCC-CCcEEEEEeC
Q 027417 100 QTFDSIGRWLNELHTHSDM-NVVTILVGNK 128 (223)
Q Consensus 100 ~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK 128 (223)
.++..+..+++.+...... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4555666666666554332 3456677764
No 453
>PRK04195 replication factor C large subunit; Provisional
Probab=97.13 E-value=0.011 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-.++|.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998763
No 454
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.12 E-value=0.0024 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999998865
No 455
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.10 E-value=0.0071 Score=44.88 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=60.0
Q ss_pred EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 027417 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA 140 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 140 (223)
..+.+.++|+|+.... .....+..+|.+++++..+. .+...+..+++.+... +.|+.+|+|++|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 4567889999965322 33456688999999999874 3555666666665543 4678899999996532 345
Q ss_pred HHHHHHHHcCCeEEE
Q 027417 141 EGKALAEAQGLFFME 155 (223)
Q Consensus 141 ~~~~~~~~~~~~~~~ 155 (223)
++.++.+..+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888887653
No 456
>PRK06217 hypothetical protein; Validated
Probab=97.08 E-value=0.00049 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 457
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.07 E-value=0.00046 Score=51.77 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.=|+|+|++|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999875
No 458
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.06 E-value=0.00054 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
|+|.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988864
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.06 E-value=0.00048 Score=47.92 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 460
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.05 E-value=0.011 Score=48.60 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=53.5
Q ss_pred EEEEEEeCCCchhhhchhHhhh-------cCCCEEEEEEECCCHhh--H-------H-------------HHHH-HHHHH
Q 027417 63 VKAQIWDTAGQERFRAVTSAYY-------RGAVGALLVYDISRRQT--F-------D-------------SIGR-WLNEL 112 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~-------------~~~~-~~~~i 112 (223)
....++++.|......+...+. -..|++|.|+|+.+-.. + . .+.. +..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 3456889999666555544431 24678999999975321 0 0 0111 12222
Q ss_pred hhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cC--CeEEEEccCCCCCHHHHHHH
Q 027417 113 HTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-QG--LFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 113 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~--~~~~~~Sa~~~~~i~~~~~~ 170 (223)
. ..=+|++||+|+..+.+ .+..++..+. +. +++++++ ........+|..
T Consensus 173 ~------~AD~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~ 224 (341)
T TIGR02475 173 A------CADLVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL 224 (341)
T ss_pred H------hCCEEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence 2 22389999999986433 2334444444 32 2465554 333556666553
No 461
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.05 E-value=0.00069 Score=51.72 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=22.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
++...-|+|+|++|||||||++.|.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999999999999864
No 462
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.04 E-value=0.00061 Score=47.67 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEF 39 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~ 39 (223)
-.++|+|++|+||||++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999987544
No 463
>PRK03839 putative kinase; Provisional
Probab=97.01 E-value=0.00062 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
+|+|+|.|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988654
No 464
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.01 E-value=0.00064 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.|+|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999664
No 465
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.01 E-value=0.00071 Score=51.65 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=21.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
....-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566889999999999999999753
No 466
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.01 E-value=0.00063 Score=48.39 Aligned_cols=21 Identities=52% Similarity=0.784 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 467
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.00059 Score=52.34 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-|+|+|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999887
No 468
>PRK14530 adenylate kinase; Provisional
Probab=96.98 E-value=0.00067 Score=52.09 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 469
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00039 Score=53.88 Aligned_cols=147 Identities=17% Similarity=0.237 Sum_probs=81.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhc----
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYR---- 85 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~---- 85 (223)
......|++.|+.+ +|++|++.+.+.-. ...++...++......-.+ ..-...+|+.+|......+..--+.
T Consensus 42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 35567888998874 58999988765432 3344545554444332222 2223569999986665544443332
Q ss_pred CCCEEEEEEECCCHhhH-HHHHHHHHHHh--------------------------h-----------cCCCCCcEEEEEe
Q 027417 86 GAVGALLVYDISRRQTF-DSIGRWLNELH--------------------------T-----------HSDMNVVTILVGN 127 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~--------------------------~-----------~~~~~~p~ivv~n 127 (223)
..-.+|+++|++++..+ ..++..+..++ + ..+..+||++|+.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 23357899999997542 22222221111 0 1123589999999
Q ss_pred CCCCCCC-----cccCHHHHHHHHHHcCCeEEEEccCC
Q 027417 128 KSDLKDA-----REVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 128 K~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
|.|.-.. +.....-.+.++..+|..+...|++-
T Consensus 199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskM 236 (363)
T KOG3929|consen 199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKM 236 (363)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 9996432 11222233444556666555556554
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.97 E-value=0.00066 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 471
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.95 E-value=0.025 Score=41.71 Aligned_cols=84 Identities=14% Similarity=-0.010 Sum_probs=50.6
Q ss_pred EEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 027417 64 KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK 143 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 143 (223)
.+.++|+|+.... .....+..+|.+|++++.+.. ++..+..+++.+.... .....++.|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence 5779999975332 244556889999999988653 4444555555554421 2346688999986532 1222234
Q ss_pred HHHHHcCCeEE
Q 027417 144 ALAEAQGLFFM 154 (223)
Q Consensus 144 ~~~~~~~~~~~ 154 (223)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555676654
No 472
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.95 E-value=0.00075 Score=45.65 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027417 16 KVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~ 35 (223)
-++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999875
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.95 E-value=0.009 Score=45.28 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
|+|+|++||||||+++.+.+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 474
>PRK10646 ADP-binding protein; Provisional
Probab=96.93 E-value=0.0073 Score=43.61 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998754
No 475
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.92 E-value=0.00084 Score=50.35 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-.++|+|++|||||||++.+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999874
No 476
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.92 E-value=0.00084 Score=49.62 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
=.|+|+|++|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 4689999999999999997766
No 477
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.91 E-value=0.00086 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
+..++++|+|++|||||+|+..|+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999888764
No 478
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.91 E-value=0.0009 Score=47.80 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.|+|+|+.|||||||++.|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 479
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.90 E-value=0.0008 Score=50.27 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-|+|+|++||||||+++.|..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998873
No 480
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00075 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...+||+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5678999999999999999998874
No 481
>PRK13949 shikimate kinase; Provisional
Probab=96.90 E-value=0.00091 Score=49.40 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
+|+|+|++||||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998765
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.90 E-value=0.00089 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.|+|+|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 483
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.88 E-value=0.00068 Score=51.88 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=35.3
Q ss_pred EEEEeCCCchhhhc----h--hHhhhcCCCEEEEEEECC------CHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 65 AQIWDTAGQERFRA----V--TSAYYRGAVGALLVYDIS------RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 65 ~~l~D~~G~~~~~~----~--~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
..++|+||+-+.-. + ....++..|.=++++.+. +|..|-+ ..+-.+..-.....|-|=|..|+|+.
T Consensus 99 Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 99 YVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred EEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhHHH
Confidence 44999999544221 1 112233455545555443 4554433 22222222223367888889999975
Q ss_pred C
Q 027417 133 D 133 (223)
Q Consensus 133 ~ 133 (223)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 3
No 484
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.001 Score=54.16 Aligned_cols=22 Identities=55% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027417 17 VVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~ 38 (223)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999988754
No 485
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.012 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-+|+|+|+.|+|||||+.-|++.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 458999999999999999988763
No 486
>PRK14532 adenylate kinase; Provisional
Probab=96.87 E-value=0.00096 Score=50.03 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
+|+|+|+|||||||+...|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 487
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.87 E-value=0.00087 Score=52.53 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
++|+|+.|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999873
No 488
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.87 E-value=0.00087 Score=50.71 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 489
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.87 E-value=0.00092 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999874
No 490
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=96.86 E-value=0.006 Score=48.48 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=61.7
Q ss_pred cCCCEEEEEEECCCH-----h--hHH----HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----ccCHHHHHHHHHH
Q 027417 85 RGAVGALLVYDISRR-----Q--TFD----SIGRWLNELHTHSDMNVVTILVGNKSDLKDAR-----EVTTAEGKALAEA 148 (223)
Q Consensus 85 ~~~d~~i~v~d~~~~-----~--s~~----~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~ 148 (223)
...|++|+++|+.+- + .+. .++.-+.++........||.+|+||+|+...- ..+.++. .+-
T Consensus 24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r---~q~ 100 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEER---EQV 100 (266)
T ss_pred CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHH---hCC
Confidence 468999999998752 1 112 23445555666677789999999999988641 1222221 123
Q ss_pred cCCeEEEEccCCCCC---HHHHHHHHHHHHHHHHhhhhhhh
Q 027417 149 QGLFFMETSALDSSN---VTAAFQTVVTEIYNILSRKVMIS 186 (223)
Q Consensus 149 ~~~~~~~~Sa~~~~~---i~~~~~~l~~~~~~~~~~~~~~~ 186 (223)
+|+.+-.-....+.. +++.|+.+...+..++...+..+
T Consensus 101 lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~l~~~ 141 (266)
T PF14331_consen 101 LGFTFPYDEDADGDAWAWFDEEFDELVARLNARVLERLAQE 141 (266)
T ss_pred cccccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455433333344444 88888888888877777665433
No 491
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.85 E-value=0.0011 Score=50.54 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
..+.|+|.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988864
No 492
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.84 E-value=0.0086 Score=52.00 Aligned_cols=55 Identities=7% Similarity=0.140 Sum_probs=33.7
Q ss_pred cEEEEEeCCCCCCC-ccc-----CH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 121 VTILVGNKSDLKDA-REV-----TT--AEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 121 p~ivv~nK~Dl~~~-~~~-----~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
|+|+|++=+|.... ... .. -...++....++..+...+....-+...+..|+..-
T Consensus 167 PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 167 PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999996653321 111 11 123455566777778877777777777777766543
No 493
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.82 E-value=0.015 Score=46.74 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=42.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc--CCCEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR--GAVGALLV 93 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v 93 (223)
.|+|.|.+||||||+++.|-.. |. . .+|-....-+..+...... ..+.+.++
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~----------g~------~----------~~d~~~~~L~~~l~~~~~~~~~~~~~av~ 61 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDL----------GY------Y----------CVDNLPPSLLPKLVELLAQSGGIRKVAVV 61 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHc----------CC------e----------EECCcCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 6899999999999999988421 11 0 1122222222223222222 23557788
Q ss_pred EECCCHhhHHHHHHHHHHHhhc
Q 027417 94 YDISRRQTFDSIGRWLNELHTH 115 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~ 115 (223)
+|+.+...+......+..+...
T Consensus 62 iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 62 IDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred EccCchhhHHHHHHHHHHHHHc
Confidence 8888765445555566665543
No 494
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.82 E-value=0.0012 Score=49.12 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027417 15 FKVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~ 35 (223)
-.++|+|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999885
No 495
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.82 E-value=0.0063 Score=43.50 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.--|++-|+-|+|||||.+.+..+
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~ 48 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKG 48 (149)
T ss_pred CCEEEEEcCCcCChHHHHHHHHHH
Confidence 345889999999999999988754
No 496
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.80 E-value=0.0012 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 497
>PLN03025 replication factor C subunit; Provisional
Probab=96.79 E-value=0.019 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
..+++.|++|+||||++..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999987653
No 498
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0011 Score=50.30 Aligned_cols=21 Identities=48% Similarity=0.600 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
.+++||+|+|||||++.|-..
T Consensus 36 TAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhh
Confidence 489999999999999988653
No 499
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.79 E-value=0.01 Score=48.85 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
...+|+|.|++|||||||+++|++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3578999999999999999999874
No 500
>PRK00625 shikimate kinase; Provisional
Probab=96.79 E-value=0.0012 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
Done!