Query 027417
Match_columns 223
No_of_seqs 146 out of 1868
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 16:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.6E-43 1.9E-47 267.9 19.3 166 12-177 11-176 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 3.7E-36 1.3E-40 228.5 25.1 173 10-182 4-176 (206)
3 3cpj_B GTP-binding protein YPT 100.0 6.2E-37 2.1E-41 235.8 19.1 175 10-184 9-183 (223)
4 2bov_A RAla, RAS-related prote 100.0 3.6E-35 1.2E-39 222.7 23.2 177 1-178 1-178 (206)
5 2fu5_C RAS-related protein RAB 100.0 2E-35 6.8E-40 220.2 19.0 174 9-182 3-176 (183)
6 2ew1_A RAS-related protein RAB 100.0 8.9E-35 3E-39 220.4 22.2 174 8-181 20-193 (201)
7 3tkl_A RAS-related protein RAB 100.0 2.6E-34 9E-39 216.3 24.5 174 7-180 9-182 (196)
8 2a5j_A RAS-related protein RAB 100.0 2E-34 6.8E-39 216.6 23.2 175 7-181 14-188 (191)
9 3tw8_B RAS-related protein RAB 100.0 2.1E-34 7.1E-39 213.9 22.9 176 7-183 2-177 (181)
10 2hup_A RAS-related protein RAB 100.0 1.1E-34 3.9E-39 219.8 21.8 173 7-179 22-195 (201)
11 2oil_A CATX-8, RAS-related pro 100.0 2.4E-34 8.2E-39 216.3 23.4 173 8-180 19-191 (193)
12 2bme_A RAB4A, RAS-related prot 100.0 2.5E-34 8.7E-39 214.7 22.9 175 7-181 3-177 (186)
13 2gf9_A RAS-related protein RAB 100.0 3.3E-34 1.1E-38 214.9 23.5 173 7-179 15-187 (189)
14 1zbd_A Rabphilin-3A; G protein 100.0 6.3E-34 2.2E-38 215.6 24.0 172 11-182 5-176 (203)
15 1vg8_A RAS-related protein RAB 100.0 2.1E-34 7E-39 218.8 21.3 172 10-182 4-180 (207)
16 1z0f_A RAB14, member RAS oncog 100.0 5.8E-34 2E-38 211.1 22.1 168 10-177 11-178 (179)
17 2efe_B Small GTP-binding prote 100.0 9.8E-34 3.4E-38 210.5 22.4 169 9-177 7-175 (181)
18 2o52_A RAS-related protein RAB 100.0 4.5E-34 1.6E-38 216.3 20.9 173 9-181 20-192 (200)
19 2il1_A RAB12; G-protein, GDP, 100.0 4.1E-34 1.4E-38 215.1 19.7 171 8-178 20-191 (192)
20 1z0j_A RAB-22, RAS-related pro 100.0 2.4E-33 8.1E-38 206.1 23.1 165 11-175 3-167 (170)
21 1z08_A RAS-related protein RAB 100.0 3.9E-34 1.3E-38 210.5 18.8 166 11-176 3-168 (170)
22 3dz8_A RAS-related protein RAB 100.0 7.3E-35 2.5E-39 218.9 15.0 172 9-180 18-189 (191)
23 1r2q_A RAS-related protein RAB 100.0 1.4E-33 4.8E-38 207.2 21.3 164 12-175 4-167 (170)
24 3kkq_A RAS-related protein M-R 100.0 2.6E-33 8.9E-38 208.7 22.7 168 9-177 13-182 (183)
25 2g6b_A RAS-related protein RAB 100.0 1.9E-33 6.5E-38 208.7 21.8 169 9-177 5-174 (180)
26 2fg5_A RAB-22B, RAS-related pr 100.0 6.8E-34 2.3E-38 213.8 19.6 170 7-176 16-185 (192)
27 1g16_A RAS-related protein SEC 100.0 8E-34 2.7E-38 208.7 19.5 165 13-178 2-166 (170)
28 2fn4_A P23, RAS-related protei 100.0 2.5E-33 8.4E-38 208.1 22.1 171 8-179 3-174 (181)
29 1ek0_A Protein (GTP-binding pr 100.0 2.1E-33 7.2E-38 206.3 21.2 163 13-175 2-167 (170)
30 3bc1_A RAS-related protein RAB 100.0 4.1E-33 1.4E-37 209.1 22.6 172 10-181 7-189 (195)
31 2nzj_A GTP-binding protein REM 100.0 4.2E-33 1.4E-37 205.9 22.3 168 12-180 2-172 (175)
32 1z2a_A RAS-related protein RAB 100.0 1.5E-33 5E-38 206.9 19.3 165 12-177 3-167 (168)
33 3t5g_A GTP-binding protein RHE 100.0 2.2E-33 7.6E-38 208.8 20.3 165 12-177 4-169 (181)
34 3cbq_A GTP-binding protein REM 100.0 2E-33 6.9E-38 212.0 19.3 168 10-177 19-188 (195)
35 1wms_A RAB-9, RAB9, RAS-relate 100.0 8.4E-33 2.9E-37 204.7 22.3 167 10-177 3-174 (177)
36 1z06_A RAS-related protein RAB 100.0 4.4E-33 1.5E-37 208.8 20.8 166 11-176 17-187 (189)
37 1x3s_A RAS-related protein RAB 100.0 9.5E-33 3.2E-37 207.5 22.6 168 9-177 10-178 (195)
38 2y8e_A RAB-protein 6, GH09086P 100.0 2.9E-33 1E-37 207.3 19.4 165 12-176 12-176 (179)
39 2f7s_A C25KG, RAS-related prot 100.0 3.1E-33 1.1E-37 214.0 20.0 173 9-181 20-203 (217)
40 3ihw_A Centg3; RAS, centaurin, 100.0 1.3E-32 4.4E-37 205.7 22.9 165 8-179 14-182 (184)
41 3q85_A GTP-binding protein REM 100.0 3.8E-33 1.3E-37 205.1 19.6 165 14-178 2-168 (169)
42 3c5c_A RAS-like protein 12; GD 100.0 2.5E-33 8.6E-38 210.0 18.9 165 10-176 17-185 (187)
43 3reg_A RHO-like small GTPase; 100.0 6E-33 2.1E-37 208.9 20.7 168 9-178 18-189 (194)
44 2p5s_A RAS and EF-hand domain 100.0 2.3E-33 7.7E-38 212.2 18.2 166 11-176 25-196 (199)
45 3cph_A RAS-related protein SEC 100.0 1.6E-32 5.4E-37 209.2 22.6 169 10-179 16-184 (213)
46 2hxs_A RAB-26, RAS-related pro 100.0 1.6E-33 5.5E-38 208.8 16.5 167 11-177 3-173 (178)
47 3clv_A RAB5 protein, putative; 100.0 3E-32 1E-36 206.0 23.6 166 11-179 4-206 (208)
48 2yc2_C IFT27, small RAB-relate 100.0 1.8E-33 6E-38 213.6 16.8 176 12-187 18-202 (208)
49 1ky3_A GTP-binding protein YPT 100.0 5.6E-33 1.9E-37 206.3 18.1 170 10-179 4-180 (182)
50 3q72_A GTP-binding protein RAD 100.0 2.1E-32 7.2E-37 200.5 20.5 163 14-178 2-165 (166)
51 3q3j_B RHO-related GTP-binding 100.0 7.3E-33 2.5E-37 211.8 18.7 168 9-178 22-204 (214)
52 2iwr_A Centaurin gamma 1; ANK 100.0 3.9E-32 1.3E-36 201.5 21.6 164 12-182 5-174 (178)
53 3oes_A GTPase rhebl1; small GT 100.0 6.7E-33 2.3E-37 209.9 17.8 167 11-178 21-188 (201)
54 4dsu_A GTPase KRAS, isoform 2B 100.0 9.2E-32 3.1E-36 201.0 23.5 167 12-180 2-169 (189)
55 1u8z_A RAS-related protein RAL 100.0 2.2E-32 7.6E-37 200.3 19.6 163 13-176 3-166 (168)
56 2a9k_A RAS-related protein RAL 100.0 3.9E-32 1.3E-36 202.6 21.2 168 11-179 15-183 (187)
57 1c1y_A RAS-related protein RAP 100.0 3.6E-32 1.2E-36 199.2 20.6 161 14-175 3-165 (167)
58 2q3h_A RAS homolog gene family 100.0 4.5E-32 1.5E-36 205.1 21.2 170 9-180 15-198 (201)
59 1kao_A RAP2A; GTP-binding prot 100.0 3E-32 1E-36 199.4 19.6 162 14-176 3-165 (167)
60 2g3y_A GTP-binding protein GEM 100.0 4.4E-32 1.5E-36 206.9 21.1 168 10-177 33-203 (211)
61 2atv_A RERG, RAS-like estrogen 100.0 4.1E-32 1.4E-36 204.7 20.4 166 12-179 26-193 (196)
62 2gf0_A GTP-binding protein DI- 100.0 2.9E-32 1E-36 205.6 19.3 163 11-175 5-169 (199)
63 4djt_A GTP-binding nuclear pro 100.0 2.9E-33 1E-37 214.3 13.6 173 9-181 6-179 (218)
64 2atx_A Small GTP binding prote 100.0 8.8E-32 3E-36 202.4 21.1 164 11-176 15-192 (194)
65 2j0v_A RAC-like GTP-binding pr 100.0 1.4E-32 4.7E-37 209.7 16.6 166 12-179 7-182 (212)
66 1gwn_A RHO-related GTP-binding 100.0 4.2E-32 1.4E-36 206.3 18.8 169 7-177 21-204 (205)
67 1m7b_A RND3/RHOE small GTP-bin 100.0 4.9E-32 1.7E-36 202.3 18.4 164 11-176 4-182 (184)
68 2gco_A H9, RHO-related GTP-bin 100.0 2.4E-31 8.2E-36 201.4 21.7 165 10-176 21-199 (201)
69 3con_A GTPase NRAS; structural 100.0 4.6E-31 1.6E-35 197.7 22.5 169 12-182 19-188 (190)
70 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.1E-31 3.8E-36 200.1 18.9 163 12-176 3-179 (186)
71 2j1l_A RHO-related GTP-binding 100.0 9.9E-32 3.4E-36 205.5 19.1 166 12-179 32-211 (214)
72 3l0i_B RAS-related protein RAB 100.0 1.7E-34 6E-39 218.3 2.8 168 9-176 28-195 (199)
73 2cjw_A GTP-binding protein GEM 100.0 7.2E-31 2.4E-35 197.5 22.2 167 12-179 4-174 (192)
74 2erx_A GTP-binding protein DI- 100.0 2.6E-31 8.8E-36 195.5 18.0 162 13-175 2-165 (172)
75 2ce2_X GTPase HRAS; signaling 100.0 1.1E-30 3.7E-35 190.8 21.0 161 14-176 3-164 (166)
76 3t1o_A Gliding protein MGLA; G 100.0 1E-31 3.4E-36 202.1 15.5 167 10-180 10-195 (198)
77 2fv8_A H6, RHO-related GTP-bin 100.0 1.2E-30 4.1E-35 198.4 21.3 164 12-177 23-200 (207)
78 2f9l_A RAB11B, member RAS onco 100.0 6E-30 2E-34 193.4 23.3 169 12-180 3-171 (199)
79 3bwd_D RAC-like GTP-binding pr 100.0 8.5E-32 2.9E-36 200.2 12.9 163 12-176 6-180 (182)
80 4bas_A ADP-ribosylation factor 100.0 2.9E-31 9.8E-36 200.1 16.0 169 7-179 10-191 (199)
81 4gzl_A RAS-related C3 botulinu 100.0 7.5E-31 2.6E-35 199.2 17.6 163 11-175 27-203 (204)
82 3gj0_A GTP-binding nuclear pro 100.0 1.9E-31 6.6E-36 204.7 14.3 168 8-178 9-176 (221)
83 1oix_A RAS-related protein RAB 100.0 3.6E-29 1.2E-33 188.0 21.0 166 10-175 25-190 (191)
84 1zd9_A ADP-ribosylation factor 100.0 1.9E-30 6.6E-35 194.3 13.1 161 10-176 18-184 (188)
85 2h57_A ADP-ribosylation factor 100.0 2.3E-29 7.8E-34 188.7 18.7 161 10-176 17-186 (190)
86 1upt_A ARL1, ADP-ribosylation 100.0 8E-30 2.7E-34 187.5 15.2 158 12-176 5-168 (171)
87 1r8s_A ADP-ribosylation factor 100.0 2.1E-30 7.2E-35 189.5 11.9 156 15-177 1-162 (164)
88 1ksh_A ARF-like protein 2; sma 100.0 5.3E-29 1.8E-33 185.9 18.2 159 12-177 16-180 (186)
89 1m2o_B GTP-binding protein SAR 100.0 5.1E-29 1.8E-33 187.0 18.1 155 12-173 21-188 (190)
90 1f6b_A SAR1; gtpases, N-termin 100.0 1.9E-29 6.6E-34 190.5 15.9 156 12-174 23-196 (198)
91 2h17_A ADP-ribosylation factor 100.0 1.8E-29 6E-34 187.9 13.4 159 9-174 16-180 (181)
92 1zj6_A ADP-ribosylation factor 100.0 6.1E-29 2.1E-33 185.9 16.3 157 12-175 14-176 (187)
93 2b6h_A ADP-ribosylation factor 100.0 4.8E-30 1.6E-34 192.9 10.1 158 12-176 27-190 (192)
94 2wkq_A NPH1-1, RAS-related C3 100.0 2.9E-28 9.9E-33 197.5 20.7 163 12-176 153-329 (332)
95 2zej_A Dardarin, leucine-rich 100.0 5.4E-30 1.8E-34 191.3 9.1 162 14-176 2-177 (184)
96 1fzq_A ADP-ribosylation factor 100.0 8.8E-29 3E-33 184.3 15.6 159 12-177 14-178 (181)
97 3th5_A RAS-related C3 botulinu 99.9 1.8E-31 6.3E-36 202.3 0.0 162 12-175 28-203 (204)
98 3llu_A RAS-related GTP-binding 100.0 3.1E-29 1.1E-33 189.0 12.1 164 7-175 13-195 (196)
99 2x77_A ADP-ribosylation factor 100.0 1.5E-29 5.2E-34 189.4 9.7 159 12-177 20-184 (189)
100 1moz_A ARL1, ADP-ribosylation 100.0 9.3E-29 3.2E-33 183.9 13.4 159 12-177 16-180 (183)
101 2wji_A Ferrous iron transport 100.0 1.4E-27 4.8E-32 175.1 14.1 153 14-175 3-163 (165)
102 2qu8_A Putative nucleolar GTP- 100.0 7.1E-27 2.4E-31 180.1 18.3 168 12-182 27-210 (228)
103 2fh5_B SR-beta, signal recogni 100.0 6.8E-28 2.3E-32 183.9 11.6 161 11-174 4-213 (214)
104 3c5h_A Glucocorticoid receptor 99.9 7.6E-29 2.6E-33 194.4 5.7 165 9-175 14-253 (255)
105 2lkc_A Translation initiation 99.9 9.4E-27 3.2E-31 172.2 14.1 155 11-177 5-171 (178)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 6.9E-27 2.4E-31 187.8 14.2 162 13-178 2-182 (307)
107 3o47_A ADP-ribosylation factor 99.9 1.7E-27 5.7E-32 193.1 9.2 157 13-176 164-326 (329)
108 2cxx_A Probable GTP-binding pr 99.9 4E-27 1.4E-31 176.0 10.0 158 15-181 2-188 (190)
109 2hjg_A GTP-binding protein ENG 99.9 5.4E-27 1.8E-31 197.0 11.4 205 12-222 173-400 (436)
110 3lvq_E ARF-GAP with SH3 domain 99.9 7.8E-27 2.7E-31 199.1 12.0 159 12-177 320-484 (497)
111 1svi_A GTP-binding protein YSX 99.9 2.7E-26 9.2E-31 172.3 13.5 156 11-175 20-193 (195)
112 2wjg_A FEOB, ferrous iron tran 99.9 2.5E-26 8.5E-31 171.5 12.6 155 13-176 6-168 (188)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 2.5E-27 8.6E-32 189.4 7.3 158 16-180 1-177 (331)
114 2dyk_A GTP-binding protein; GT 99.9 5.8E-26 2E-30 165.2 11.5 148 15-175 2-160 (161)
115 4dcu_A GTP-binding protein ENG 99.9 3.3E-26 1.1E-30 193.2 11.6 206 11-222 192-420 (456)
116 2gj8_A MNME, tRNA modification 99.9 3E-26 1E-30 169.3 9.6 153 13-175 3-164 (172)
117 3a1s_A Iron(II) transport prot 99.9 2.2E-25 7.7E-30 174.7 14.8 155 12-175 3-165 (258)
118 3iev_A GTP-binding protein ERA 99.9 2.6E-25 9E-30 178.7 14.6 164 8-175 4-180 (308)
119 3dpu_A RAB family protein; roc 99.9 2.4E-26 8.3E-31 197.6 8.2 164 10-177 37-208 (535)
120 3b1v_A Ferrous iron uptake tra 99.9 9.5E-26 3.2E-30 178.0 10.7 153 13-175 2-162 (272)
121 3pqc_A Probable GTP-binding pr 99.9 6.9E-25 2.4E-29 164.3 13.8 157 10-176 19-193 (195)
122 3iby_A Ferrous iron transport 99.9 1.2E-25 4.2E-30 176.0 9.8 151 15-174 2-164 (256)
123 4dhe_A Probable GTP-binding pr 99.9 1.6E-24 5.6E-29 166.0 11.0 163 11-177 26-211 (223)
124 3k53_A Ferrous iron transport 99.9 2.7E-24 9.3E-29 169.9 12.6 155 14-176 3-165 (271)
125 3i8s_A Ferrous iron transport 99.9 1.2E-24 4E-29 172.2 9.2 153 14-175 3-167 (274)
126 1nrj_B SR-beta, signal recogni 99.9 4.8E-25 1.7E-29 168.5 5.7 144 11-163 9-170 (218)
127 2e87_A Hypothetical protein PH 99.9 8E-23 2.8E-27 167.4 18.0 163 12-179 165-338 (357)
128 3gee_A MNME, tRNA modification 99.9 3.2E-23 1.1E-27 174.9 13.5 157 13-176 232-397 (476)
129 1wf3_A GTP-binding protein; GT 99.9 2.4E-23 8.3E-28 166.5 11.6 156 12-175 5-171 (301)
130 1lnz_A SPO0B-associated GTP-bi 99.9 3.2E-23 1.1E-27 168.2 9.7 156 15-175 159-328 (342)
131 3qq5_A Small GTP-binding prote 99.9 1.2E-23 4.1E-28 174.9 6.1 157 10-175 30-194 (423)
132 1mky_A Probable GTP-binding pr 99.9 3.9E-22 1.3E-26 167.6 14.0 200 12-222 178-402 (439)
133 1xzp_A Probable tRNA modificat 99.9 3.3E-22 1.1E-26 168.9 12.5 153 14-177 243-405 (482)
134 1cip_A Protein (guanine nucleo 99.9 5.1E-22 1.7E-26 161.7 12.9 117 62-178 192-345 (353)
135 1mky_A Probable GTP-binding pr 99.9 1.4E-21 4.7E-26 164.2 14.9 151 15-177 2-166 (439)
136 3sjy_A Translation initiation 99.9 5E-21 1.7E-25 159.2 17.7 160 10-175 4-190 (403)
137 3lxx_A GTPase IMAP family memb 99.9 1.6E-21 5.3E-26 151.3 13.4 162 10-175 25-212 (239)
138 1wb1_A Translation elongation 99.9 2.2E-21 7.4E-26 164.5 15.2 156 12-176 17-188 (482)
139 3cb4_D GTP-binding protein LEP 99.9 2.4E-21 8.1E-26 167.3 14.9 157 13-175 3-180 (599)
140 2qtf_A Protein HFLX, GTP-bindi 99.9 7.1E-21 2.4E-25 155.8 16.9 158 16-176 181-353 (364)
141 1s0u_A EIF-2-gamma, translatio 99.9 1.4E-20 4.7E-25 156.7 18.8 158 12-175 6-196 (408)
142 3ohm_A Guanine nucleotide-bind 99.9 1.7E-21 5.9E-26 156.4 12.4 117 62-178 166-319 (327)
143 2ywe_A GTP-binding protein LEP 99.9 8.2E-21 2.8E-25 163.7 16.9 158 12-175 4-182 (600)
144 2xtp_A GTPase IMAP family memb 99.9 2.8E-21 9.6E-26 151.6 12.9 164 10-177 18-208 (260)
145 2hjg_A GTP-binding protein ENG 99.9 2.2E-22 7.4E-27 169.0 6.8 152 14-175 3-163 (436)
146 3geh_A MNME, tRNA modification 99.9 5.1E-22 1.7E-26 167.0 8.9 152 13-176 223-383 (462)
147 3lxw_A GTPase IMAP family memb 99.9 3.5E-21 1.2E-25 150.0 12.4 165 11-177 18-208 (247)
148 1ega_A Protein (GTP-binding pr 99.9 1.2E-21 4.1E-26 156.8 9.8 155 13-174 7-172 (301)
149 2xtz_A Guanine nucleotide-bind 99.9 2.4E-21 8.2E-26 157.7 11.6 119 61-179 181-347 (354)
150 3j2k_7 ERF3, eukaryotic polype 99.9 5.8E-21 2E-25 160.2 14.3 160 8-169 11-217 (439)
151 3t5d_A Septin-7; GTP-binding p 99.9 1.1E-21 3.9E-26 155.1 8.6 159 12-174 6-201 (274)
152 1kk1_A EIF2gamma; initiation o 99.9 1.3E-20 4.5E-25 157.0 15.4 160 10-175 6-198 (410)
153 1zcb_A G alpha I/13; GTP-bindi 99.8 6.2E-21 2.1E-25 155.8 12.4 118 62-179 200-355 (362)
154 3p26_A Elongation factor 1 alp 99.8 2.6E-21 8.7E-26 164.4 9.8 154 12-167 31-228 (483)
155 2qag_A Septin-2, protein NEDD5 99.8 4.3E-22 1.5E-26 163.1 4.8 164 12-180 35-236 (361)
156 2ged_A SR-beta, signal recogni 99.8 4.2E-21 1.4E-25 143.7 8.3 117 11-136 45-173 (193)
157 1jny_A EF-1-alpha, elongation 99.8 1.2E-21 4E-26 164.4 4.4 157 12-169 4-205 (435)
158 3izy_P Translation initiation 99.8 1E-22 3.6E-27 173.4 -2.2 158 13-175 3-166 (537)
159 1azs_C GS-alpha; complex (lyas 99.8 8.8E-20 3E-24 150.2 15.1 118 63-180 217-388 (402)
160 4fid_A G protein alpha subunit 99.8 1.8E-20 6.2E-25 151.0 10.6 117 61-177 159-328 (340)
161 2elf_A Protein translation elo 99.8 1.4E-20 4.8E-25 154.4 10.0 147 16-178 23-181 (370)
162 1d2e_A Elongation factor TU (E 99.8 1.4E-20 5E-25 156.1 10.2 158 13-174 2-192 (397)
163 4dcu_A GTP-binding protein ENG 99.8 4.8E-21 1.6E-25 161.7 6.7 154 12-175 21-183 (456)
164 2c78_A Elongation factor TU-A; 99.8 7.7E-21 2.6E-25 158.2 7.4 151 9-163 6-180 (405)
165 1g7s_A Translation initiation 99.8 6.5E-20 2.2E-24 158.4 13.1 157 13-176 4-217 (594)
166 1zun_B Sulfate adenylate trans 99.8 7.4E-20 2.5E-24 153.5 12.9 157 11-170 21-217 (434)
167 3tr5_A RF-3, peptide chain rel 99.8 5.1E-20 1.8E-24 157.2 11.8 117 11-133 10-148 (528)
168 3izq_1 HBS1P, elongation facto 99.8 6.7E-21 2.3E-25 165.4 4.8 157 12-168 165-363 (611)
169 1r5b_A Eukaryotic peptide chai 99.8 1.1E-20 3.7E-25 159.7 5.2 156 12-169 41-244 (467)
170 2aka_B Dynamin-1; fusion prote 99.8 2.5E-20 8.7E-25 148.9 6.3 162 10-174 22-250 (299)
171 1zo1_I IF2, translation initia 99.8 2.2E-21 7.7E-26 163.9 0.2 153 12-173 2-163 (501)
172 1pui_A ENGB, probable GTP-bind 99.8 2.4E-19 8.2E-24 135.9 11.4 156 11-175 23-197 (210)
173 3avx_A Elongation factor TS, e 99.8 2.9E-19 9.9E-24 161.5 11.1 160 10-173 292-482 (1289)
174 1f60_A Elongation factor EEF1A 99.8 3.4E-20 1.2E-24 156.3 4.5 155 11-168 4-203 (458)
175 3def_A T7I23.11 protein; chlor 99.8 5.3E-18 1.8E-22 133.1 13.4 124 12-138 34-170 (262)
176 2j69_A Bacterial dynamin-like 99.8 4.8E-18 1.6E-22 149.7 14.2 165 12-179 67-327 (695)
177 3t34_A Dynamin-related protein 99.8 4.8E-19 1.6E-23 145.2 7.3 158 13-172 33-256 (360)
178 3mca_A HBS1, elongation factor 99.8 8.9E-20 3E-24 157.9 2.9 152 11-165 174-371 (592)
179 1udx_A The GTP-binding protein 99.8 4.5E-18 1.5E-22 141.0 13.0 159 15-177 158-325 (416)
180 2dy1_A Elongation factor G; tr 99.8 4.4E-18 1.5E-22 149.3 13.2 117 12-132 7-139 (665)
181 2qnr_A Septin-2, protein NEDD5 99.7 2.4E-19 8.2E-24 143.4 2.9 161 11-177 15-214 (301)
182 1dar_A EF-G, elongation factor 99.7 6.9E-18 2.4E-22 148.6 12.2 117 9-133 7-143 (691)
183 1jwy_B Dynamin A GTPase domain 99.7 1.1E-17 3.9E-22 134.5 11.4 162 11-175 21-260 (315)
184 2h5e_A Peptide chain release f 99.7 1.9E-17 6.6E-22 141.5 13.4 118 12-133 11-148 (529)
185 1h65_A Chloroplast outer envel 99.7 7.8E-18 2.7E-22 132.7 9.8 125 12-138 37-173 (270)
186 2qag_C Septin-7; cell cycle, c 99.7 4.6E-18 1.6E-22 141.0 7.9 159 11-173 28-223 (418)
187 1u0l_A Probable GTPase ENGC; p 99.7 2.6E-18 8.8E-23 137.5 4.6 134 29-173 32-169 (301)
188 2rdo_7 EF-G, elongation factor 99.7 2.3E-16 8E-21 139.1 17.3 120 10-133 6-148 (704)
189 1wxq_A GTP-binding protein; st 99.7 7.2E-18 2.5E-22 139.4 5.5 85 15-99 1-114 (397)
190 2xex_A Elongation factor G; GT 99.7 8.6E-17 2.9E-21 141.7 12.4 117 11-133 7-141 (693)
191 2x2e_A Dynamin-1; nitration, h 99.7 6E-18 2E-22 138.3 -0.2 159 12-173 29-254 (353)
192 2wsm_A Hydrogenase expression/ 99.6 1E-16 3.5E-21 122.4 5.7 155 13-178 29-215 (221)
193 1jal_A YCHF protein; nucleotid 99.6 4.5E-15 1.5E-19 120.6 15.7 145 15-159 3-239 (363)
194 3p32_A Probable GTPase RV1496/ 99.6 3.2E-16 1.1E-20 128.1 6.8 103 63-177 172-284 (355)
195 2hf9_A Probable hydrogenase ni 99.6 4.9E-18 1.7E-22 130.2 -4.4 153 13-176 37-223 (226)
196 3vqt_A RF-3, peptide chain rel 99.6 1.3E-14 4.3E-19 124.6 15.9 117 11-133 28-166 (548)
197 1n0u_A EF-2, elongation factor 99.6 9.4E-16 3.2E-20 137.6 7.7 119 10-132 15-163 (842)
198 2dby_A GTP-binding protein; GD 99.6 5.7E-15 2E-19 120.7 10.0 156 15-170 2-255 (368)
199 2qpt_A EH domain-containing pr 99.6 1.8E-15 6.3E-20 129.9 6.9 119 11-134 62-233 (550)
200 4a9a_A Ribosome-interacting GT 99.6 8.3E-14 2.8E-18 113.8 15.2 155 12-169 70-240 (376)
201 2www_A Methylmalonic aciduria 99.5 2.8E-15 9.6E-20 122.1 5.1 103 63-177 167-279 (349)
202 2p67_A LAO/AO transport system 99.5 7.1E-15 2.4E-19 119.5 4.9 103 63-176 149-260 (341)
203 3j25_A Tetracycline resistance 99.5 4.6E-15 1.6E-19 129.7 3.3 116 14-133 2-133 (638)
204 4fn5_A EF-G 1, elongation fact 99.5 6.2E-13 2.1E-17 117.6 16.1 119 11-133 10-151 (709)
205 3zvr_A Dynamin-1; hydrolase, D 99.5 7.4E-14 2.5E-18 122.9 9.6 158 12-173 49-274 (772)
206 1yrb_A ATP(GTP)binding protein 99.5 2.7E-13 9.1E-18 106.0 10.4 108 63-175 109-255 (262)
207 2qm8_A GTPase/ATPase; G protei 99.4 2.8E-13 9.4E-18 109.8 7.6 104 62-176 147-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 3.6E-13 1.2E-17 107.6 8.1 97 73-172 66-164 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 4E-11 1.4E-15 98.6 14.2 87 12-98 18-127 (392)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 1.9E-12 6.6E-17 106.2 6.4 90 12-101 20-131 (396)
211 3l82_B F-box only protein 4; T 99.2 2.2E-11 7.6E-16 90.7 4.6 103 70-175 109-221 (227)
212 3l2o_B F-box only protein 4; s 99.0 4.3E-10 1.5E-14 87.8 5.8 104 70-175 194-306 (312)
213 3h2y_A GTPase family protein; 99.0 2.6E-09 8.9E-14 87.5 9.7 95 73-174 56-157 (368)
214 3ec1_A YQEH GTPase; atnos1, at 98.9 9.1E-11 3.1E-15 96.2 -0.7 140 15-163 163-317 (369)
215 2j37_W Signal recognition part 98.9 5E-10 1.7E-14 94.8 3.5 152 12-174 99-310 (504)
216 3h2y_A GTPase family protein; 98.9 8.5E-11 2.9E-15 96.3 -3.1 135 15-157 161-310 (368)
217 3sop_A Neuronal-specific septi 98.8 3.2E-09 1.1E-13 83.3 5.7 137 14-155 2-178 (270)
218 2qag_B Septin-6, protein NEDD5 98.8 8.7E-09 3E-13 85.3 8.4 116 14-134 42-191 (427)
219 1tq4_A IIGP1, interferon-induc 98.8 9.3E-08 3.2E-12 79.1 13.8 154 14-175 69-251 (413)
220 3ec1_A YQEH GTPase; atnos1, at 98.8 1E-08 3.5E-13 84.0 7.5 96 72-174 57-159 (369)
221 1puj_A YLQF, conserved hypothe 98.7 2.8E-08 9.7E-13 78.4 7.5 101 67-177 3-106 (282)
222 1puj_A YLQF, conserved hypothe 98.6 4.1E-08 1.4E-12 77.4 5.2 59 12-74 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.5 4.2E-08 1.4E-12 76.6 2.7 57 15-75 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.4 1.1E-06 3.6E-11 73.3 8.5 86 63-158 183-274 (443)
225 2v3c_C SRP54, signal recogniti 98.2 5.3E-06 1.8E-10 69.1 9.3 84 62-156 180-271 (432)
226 1f5n_A Interferon-induced guan 98.2 1.3E-06 4.4E-11 75.3 5.5 65 11-75 35-103 (592)
227 3cnl_A YLQF, putative uncharac 98.2 7.8E-07 2.7E-11 69.3 3.3 93 70-173 4-97 (262)
228 3kl4_A SRP54, signal recogniti 98.2 1.3E-06 4.6E-11 72.5 4.9 91 62-164 179-277 (433)
229 1j8m_F SRP54, signal recogniti 98.2 4.3E-06 1.5E-10 66.3 7.2 92 62-166 180-280 (297)
230 3szr_A Interferon-induced GTP- 98.1 8.7E-06 3E-10 70.9 7.5 24 15-38 46-69 (608)
231 1t9h_A YLOQ, probable GTPase E 98.0 2.3E-06 7.7E-11 68.1 2.7 90 79-171 79-171 (307)
232 1bif_A 6-phosphofructo-2-kinas 97.9 8.6E-07 2.9E-11 74.9 -1.9 110 12-126 37-156 (469)
233 3e70_C DPA, signal recognition 97.8 1.9E-05 6.6E-10 63.4 5.5 91 64-166 213-309 (328)
234 2rcn_A Probable GTPase ENGC; Y 97.8 6.6E-05 2.3E-09 60.9 7.8 85 83-171 127-213 (358)
235 3q5d_A Atlastin-1; G protein, 97.6 7.7E-05 2.6E-09 62.3 5.0 26 11-36 64-89 (447)
236 1ye8_A Protein THEP1, hypothet 97.5 7.2E-05 2.5E-09 54.7 3.3 23 15-37 1-23 (178)
237 2rcn_A Probable GTPase ENGC; Y 97.4 8.6E-05 2.9E-09 60.2 3.7 24 16-39 217-240 (358)
238 2xxa_A Signal recognition part 97.4 0.0011 3.7E-08 55.3 10.5 81 62-153 183-270 (433)
239 2yv5_A YJEQ protein; hydrolase 97.4 0.00029 9.8E-09 55.9 6.2 23 15-38 166-188 (302)
240 1t9h_A YLOQ, probable GTPase E 97.4 3.7E-05 1.3E-09 61.1 0.9 24 15-38 174-197 (307)
241 1kgd_A CASK, peripheral plasma 97.4 0.00011 3.6E-09 53.7 3.1 22 16-37 7-28 (180)
242 1lvg_A Guanylate kinase, GMP k 97.3 0.00013 4.3E-09 54.2 3.1 22 15-36 5-26 (198)
243 3tr0_A Guanylate kinase, GMP k 97.2 0.00018 6.3E-09 53.3 3.1 22 16-37 9-30 (205)
244 1zp6_A Hypothetical protein AT 97.2 0.00018 6.2E-09 52.7 3.0 23 15-37 10-32 (191)
245 3a00_A Guanylate kinase, GMP k 97.2 0.00019 6.3E-09 52.7 3.0 21 17-37 4-24 (186)
246 1znw_A Guanylate kinase, GMP k 97.2 0.00021 7.1E-09 53.3 3.1 23 16-38 22-44 (207)
247 1s96_A Guanylate kinase, GMP k 97.2 0.00022 7.7E-09 53.8 3.1 24 15-38 17-40 (219)
248 4gp7_A Metallophosphoesterase; 97.1 0.0002 7E-09 51.8 2.7 20 16-35 11-30 (171)
249 1z6g_A Guanylate kinase; struc 97.1 0.00024 8.1E-09 53.6 3.1 22 16-37 25-46 (218)
250 1knq_A Gluconate kinase; ALFA/ 97.1 0.00035 1.2E-08 50.4 3.7 23 14-36 8-30 (175)
251 3ney_A 55 kDa erythrocyte memb 97.1 0.00027 9.3E-09 52.4 3.1 23 15-37 20-42 (197)
252 3t61_A Gluconokinase; PSI-biol 97.1 0.00027 9.3E-09 52.4 3.0 23 14-36 18-40 (202)
253 3c8u_A Fructokinase; YP_612366 97.1 0.00033 1.1E-08 52.3 3.4 26 12-37 20-45 (208)
254 3tau_A Guanylate kinase, GMP k 97.1 0.00031 1.1E-08 52.5 3.1 23 15-37 9-31 (208)
255 1htw_A HI0065; nucleotide-bind 97.1 0.00034 1.1E-08 50.1 3.1 23 16-38 35-57 (158)
256 1ex7_A Guanylate kinase; subst 97.1 0.00035 1.2E-08 51.4 3.2 21 17-37 4-24 (186)
257 3tif_A Uncharacterized ABC tra 97.0 0.00031 1.1E-08 53.6 3.0 22 16-37 33-54 (235)
258 1kag_A SKI, shikimate kinase I 97.0 0.00038 1.3E-08 50.1 3.1 23 15-37 5-27 (173)
259 2j41_A Guanylate kinase; GMP, 97.0 0.00039 1.3E-08 51.5 3.0 24 15-38 7-30 (207)
260 2bdt_A BH3686; alpha-beta prot 97.0 0.00041 1.4E-08 50.8 3.1 21 16-36 4-24 (189)
261 3lw7_A Adenylate kinase relate 97.0 0.00046 1.6E-08 49.4 3.3 20 15-34 2-21 (179)
262 2qor_A Guanylate kinase; phosp 97.0 0.00042 1.4E-08 51.5 3.1 23 15-37 13-35 (204)
263 2pcj_A ABC transporter, lipopr 97.0 0.00038 1.3E-08 52.7 2.9 22 16-37 32-53 (224)
264 2onk_A Molybdate/tungstate ABC 97.0 0.00046 1.6E-08 52.9 3.2 22 16-37 26-47 (240)
265 4eun_A Thermoresistant glucoki 96.9 0.00046 1.6E-08 51.1 3.1 22 15-36 30-51 (200)
266 3cwq_A Para family chromosome 96.9 0.012 4.2E-07 43.7 11.0 86 62-154 67-153 (209)
267 1ly1_A Polynucleotide kinase; 96.9 0.00061 2.1E-08 49.2 3.6 22 15-36 3-24 (181)
268 3kb2_A SPBC2 prophage-derived 96.9 0.00055 1.9E-08 49.1 3.2 21 16-36 3-23 (173)
269 2bbw_A Adenylate kinase 4, AK4 96.9 0.00055 1.9E-08 52.4 3.4 21 15-35 28-48 (246)
270 1sgw_A Putative ABC transporte 96.9 0.00049 1.7E-08 51.7 3.1 22 16-37 37-58 (214)
271 1b0u_A Histidine permease; ABC 96.9 0.00049 1.7E-08 53.4 3.1 22 16-37 34-55 (262)
272 3gfo_A Cobalt import ATP-bindi 96.9 0.00049 1.7E-08 53.8 3.1 22 16-37 36-57 (275)
273 2cbz_A Multidrug resistance-as 96.9 0.0005 1.7E-08 52.6 3.0 22 16-37 33-54 (237)
274 3fb4_A Adenylate kinase; psych 96.9 0.00059 2E-08 51.0 3.2 22 15-36 1-22 (216)
275 3ec2_A DNA replication protein 96.9 0.00046 1.6E-08 50.1 2.6 23 15-37 39-61 (180)
276 1g6h_A High-affinity branched- 96.9 0.00054 1.9E-08 53.0 3.0 22 16-37 35-56 (257)
277 4g1u_C Hemin import ATP-bindin 96.9 0.00055 1.9E-08 53.3 3.0 22 16-37 39-60 (266)
278 3dl0_A Adenylate kinase; phosp 96.9 0.00062 2.1E-08 50.9 3.2 22 15-36 1-22 (216)
279 2pze_A Cystic fibrosis transme 96.9 0.00059 2E-08 51.9 3.1 22 16-37 36-57 (229)
280 3asz_A Uridine kinase; cytidin 96.9 0.00066 2.3E-08 50.5 3.3 24 14-37 6-29 (211)
281 2i3b_A HCR-ntpase, human cance 96.9 0.00057 1.9E-08 50.4 2.9 22 16-37 3-24 (189)
282 2ff7_A Alpha-hemolysin translo 96.8 0.00058 2E-08 52.5 3.0 22 16-37 37-58 (247)
283 2cdn_A Adenylate kinase; phosp 96.8 0.00078 2.7E-08 49.8 3.6 28 9-36 15-42 (201)
284 1mv5_A LMRA, multidrug resista 96.8 0.00065 2.2E-08 52.1 3.3 22 16-37 30-51 (243)
285 2olj_A Amino acid ABC transpor 96.8 0.00059 2E-08 53.0 3.1 22 16-37 52-73 (263)
286 1ji0_A ABC transporter; ATP bi 96.8 0.00061 2.1E-08 52.2 3.0 22 16-37 34-55 (240)
287 1vpl_A ABC transporter, ATP-bi 96.8 0.00063 2.1E-08 52.6 3.1 22 16-37 43-64 (256)
288 2eyu_A Twitching motility prot 96.8 0.00062 2.1E-08 52.8 3.0 22 16-37 27-48 (261)
289 1qhx_A CPT, protein (chloramph 96.8 0.00067 2.3E-08 49.0 3.1 22 15-36 4-25 (178)
290 3co5_A Putative two-component 96.8 0.0019 6.7E-08 45.0 5.3 23 14-36 27-49 (143)
291 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00068 2.3E-08 52.2 3.2 22 16-37 31-52 (250)
292 3sr0_A Adenylate kinase; phosp 96.8 0.00078 2.7E-08 50.3 3.4 22 15-36 1-22 (206)
293 2qi9_C Vitamin B12 import ATP- 96.8 0.00066 2.3E-08 52.3 3.1 22 16-37 28-49 (249)
294 3vaa_A Shikimate kinase, SK; s 96.8 0.00076 2.6E-08 49.9 3.3 22 15-36 26-47 (199)
295 2v9p_A Replication protein E1; 96.8 0.00071 2.4E-08 53.7 3.2 22 16-37 128-149 (305)
296 3b85_A Phosphate starvation-in 96.8 0.0005 1.7E-08 51.5 2.3 22 16-37 24-45 (208)
297 2ghi_A Transport protein; mult 96.8 0.00067 2.3E-08 52.6 3.0 22 16-37 48-69 (260)
298 2zu0_C Probable ATP-dependent 96.8 0.00074 2.5E-08 52.6 3.2 22 16-37 48-69 (267)
299 2if2_A Dephospho-COA kinase; a 96.8 0.00077 2.6E-08 49.9 3.2 22 15-36 2-23 (204)
300 1u0l_A Probable GTPase ENGC; p 96.8 0.00083 2.8E-08 53.2 3.5 24 16-39 171-194 (301)
301 2jaq_A Deoxyguanosine kinase; 96.8 0.00084 2.9E-08 49.5 3.3 21 16-36 2-22 (205)
302 2ixe_A Antigen peptide transpo 96.8 0.00071 2.4E-08 52.8 3.0 22 16-37 47-68 (271)
303 2ihy_A ABC transporter, ATP-bi 96.8 0.00073 2.5E-08 53.0 3.1 22 16-37 49-70 (279)
304 1cke_A CK, MSSA, protein (cyti 96.8 0.00085 2.9E-08 50.5 3.3 22 15-36 6-27 (227)
305 3uie_A Adenylyl-sulfate kinase 96.8 0.00079 2.7E-08 49.8 3.1 24 14-37 25-48 (200)
306 1nks_A Adenylate kinase; therm 96.8 0.00092 3.1E-08 48.8 3.4 21 16-36 3-23 (194)
307 2nq2_C Hypothetical ABC transp 96.7 0.00076 2.6E-08 52.0 3.0 22 16-37 33-54 (253)
308 1jjv_A Dephospho-COA kinase; P 96.7 0.001 3.4E-08 49.4 3.5 22 15-36 3-24 (206)
309 3aez_A Pantothenate kinase; tr 96.7 0.00079 2.7E-08 53.6 3.1 27 11-37 87-113 (312)
310 4a74_A DNA repair and recombin 96.7 0.00077 2.6E-08 50.7 2.9 22 16-37 27-48 (231)
311 2yz2_A Putative ABC transporte 96.7 0.00079 2.7E-08 52.3 3.0 22 16-37 35-56 (266)
312 2rhm_A Putative kinase; P-loop 96.7 0.001 3.5E-08 48.6 3.4 23 14-36 5-27 (193)
313 2ehv_A Hypothetical protein PH 96.7 0.0009 3.1E-08 51.0 3.2 20 16-35 32-51 (251)
314 1np6_A Molybdopterin-guanine d 96.7 0.00098 3.3E-08 48.4 3.1 23 15-37 7-29 (174)
315 3cm0_A Adenylate kinase; ATP-b 96.7 0.0013 4.3E-08 47.9 3.7 23 14-36 4-26 (186)
316 1uf9_A TT1252 protein; P-loop, 96.7 0.0011 3.8E-08 48.8 3.5 27 11-37 5-31 (203)
317 1kht_A Adenylate kinase; phosp 96.7 0.0011 3.7E-08 48.3 3.4 22 15-36 4-25 (192)
318 3lnc_A Guanylate kinase, GMP k 96.7 0.00055 1.9E-08 51.9 1.8 22 16-37 29-51 (231)
319 2wwf_A Thymidilate kinase, put 96.7 0.0012 4.2E-08 49.0 3.7 24 13-36 9-32 (212)
320 1e4v_A Adenylate kinase; trans 96.7 0.00099 3.4E-08 49.8 3.2 22 15-36 1-22 (214)
321 3tlx_A Adenylate kinase 2; str 96.7 0.0012 4.3E-08 50.4 3.8 25 12-36 27-51 (243)
322 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.8E-08 48.2 3.2 22 15-36 6-27 (185)
323 1aky_A Adenylate kinase; ATP:A 96.7 0.0012 4.1E-08 49.6 3.5 23 14-36 4-26 (220)
324 2pjz_A Hypothetical protein ST 96.7 0.0011 3.7E-08 51.5 3.3 23 16-38 32-54 (263)
325 2qt1_A Nicotinamide riboside k 96.7 0.0014 4.9E-08 48.6 3.9 27 11-37 18-44 (207)
326 1y63_A LMAJ004144AAA protein; 96.7 0.0013 4.5E-08 48.0 3.5 25 13-37 9-33 (184)
327 2x8a_A Nuclear valosin-contain 96.6 0.0011 3.6E-08 51.9 3.0 20 17-36 47-66 (274)
328 2kjq_A DNAA-related protein; s 96.6 0.00073 2.5E-08 47.7 1.9 23 15-37 37-59 (149)
329 1tev_A UMP-CMP kinase; ploop, 96.6 0.0014 4.9E-08 47.8 3.6 23 14-36 3-25 (196)
330 2plr_A DTMP kinase, probable t 96.6 0.0015 5.1E-08 48.4 3.6 22 15-36 5-26 (213)
331 1ak2_A Adenylate kinase isoenz 96.6 0.0014 4.9E-08 49.7 3.6 26 11-36 13-38 (233)
332 1via_A Shikimate kinase; struc 96.6 0.0011 3.9E-08 47.8 2.8 21 16-36 6-26 (175)
333 1ukz_A Uridylate kinase; trans 96.6 0.0018 6.3E-08 47.8 4.1 25 12-36 13-37 (203)
334 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0011 3.9E-08 53.7 3.0 23 16-38 32-54 (359)
335 2pt5_A Shikimate kinase, SK; a 96.6 0.0014 4.9E-08 46.7 3.3 21 16-36 2-22 (168)
336 1lw7_A Transcriptional regulat 96.6 0.001 3.5E-08 54.1 2.7 24 14-37 170-193 (365)
337 1gvn_B Zeta; postsegregational 96.6 0.0015 5.3E-08 51.3 3.6 25 12-36 31-55 (287)
338 1ixz_A ATP-dependent metallopr 96.6 0.0013 4.4E-08 50.5 3.1 21 17-37 52-72 (254)
339 2f1r_A Molybdopterin-guanine d 96.6 0.00063 2.2E-08 49.3 1.2 22 16-37 4-25 (171)
340 3tui_C Methionine import ATP-b 96.5 0.0013 4.5E-08 53.4 3.2 23 16-38 56-78 (366)
341 2bbs_A Cystic fibrosis transme 96.5 0.0012 4E-08 52.1 2.8 22 16-37 66-87 (290)
342 3jvv_A Twitching mobility prot 96.5 0.0012 4.3E-08 53.5 3.0 22 16-37 125-146 (356)
343 3nh6_A ATP-binding cassette SU 96.5 0.00086 2.9E-08 53.2 2.0 22 16-37 82-103 (306)
344 1z47_A CYSA, putative ABC-tran 96.5 0.0013 4.6E-08 53.2 3.2 23 16-38 43-65 (355)
345 1zd8_A GTP:AMP phosphotransfer 96.5 0.0015 5.3E-08 49.2 3.3 23 14-36 7-29 (227)
346 2yyz_A Sugar ABC transporter, 96.5 0.0014 4.8E-08 53.1 3.2 22 16-37 31-52 (359)
347 2xb4_A Adenylate kinase; ATP-b 96.5 0.0017 5.7E-08 49.0 3.4 22 15-36 1-22 (223)
348 2jeo_A Uridine-cytidine kinase 96.5 0.0018 6.1E-08 49.5 3.6 23 14-36 25-47 (245)
349 2it1_A 362AA long hypothetical 96.5 0.0015 5.1E-08 53.1 3.2 23 16-38 31-53 (362)
350 3tqc_A Pantothenate kinase; bi 96.5 0.002 6.8E-08 51.5 3.9 26 11-36 89-114 (321)
351 3rlf_A Maltose/maltodextrin im 96.5 0.0015 5.1E-08 53.4 3.2 23 16-38 31-53 (381)
352 1sxj_E Activator 1 40 kDa subu 96.5 0.0084 2.9E-07 48.1 7.7 20 17-36 39-58 (354)
353 1jbk_A CLPB protein; beta barr 96.5 0.0018 6.1E-08 46.8 3.3 24 14-37 43-66 (195)
354 2yvu_A Probable adenylyl-sulfa 96.5 0.0024 8.2E-08 46.5 4.0 24 13-36 12-35 (186)
355 3iij_A Coilin-interacting nucl 96.5 0.0016 5.5E-08 47.2 3.0 23 14-36 11-33 (180)
356 2v54_A DTMP kinase, thymidylat 96.5 0.0019 6.3E-08 47.7 3.4 24 14-37 4-27 (204)
357 1zak_A Adenylate kinase; ATP:A 96.5 0.0015 5.2E-08 49.1 2.9 22 15-36 6-27 (222)
358 1v43_A Sugar-binding transport 96.5 0.0016 5.5E-08 53.1 3.2 22 16-37 39-60 (372)
359 1g29_1 MALK, maltose transport 96.5 0.0016 5.4E-08 53.1 3.2 23 16-38 31-53 (372)
360 2c95_A Adenylate kinase 1; tra 96.4 0.0019 6.4E-08 47.3 3.2 23 14-36 9-31 (196)
361 2p5t_B PEZT; postsegregational 96.4 0.0016 5.6E-08 50.0 3.1 26 11-36 29-54 (253)
362 1odf_A YGR205W, hypothetical 3 96.4 0.0023 7.8E-08 50.4 3.8 26 11-36 28-53 (290)
363 2ze6_A Isopentenyl transferase 96.4 0.0017 5.9E-08 50.0 3.1 21 16-36 3-23 (253)
364 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0016 5.4E-08 52.3 3.0 22 16-37 173-194 (330)
365 3umf_A Adenylate kinase; rossm 96.4 0.0019 6.4E-08 48.6 3.1 20 17-36 32-51 (217)
366 1rj9_A FTSY, signal recognitio 96.4 0.0017 5.9E-08 51.5 3.1 23 14-36 102-124 (304)
367 3pfi_A Holliday junction ATP-d 96.4 0.012 4.1E-07 47.0 8.0 24 14-37 55-78 (338)
368 3be4_A Adenylate kinase; malar 96.4 0.0019 6.6E-08 48.4 3.1 23 14-36 5-27 (217)
369 1nn5_A Similar to deoxythymidy 96.4 0.0021 7.3E-08 47.7 3.4 23 14-36 9-31 (215)
370 2pbr_A DTMP kinase, thymidylat 96.4 0.002 7E-08 47.0 3.2 21 16-36 2-22 (195)
371 2ewv_A Twitching motility prot 96.4 0.0019 6.5E-08 52.7 3.2 22 16-37 138-159 (372)
372 1iy2_A ATP-dependent metallopr 96.4 0.0019 6.4E-08 50.4 3.1 21 17-37 76-96 (278)
373 2gza_A Type IV secretion syste 96.4 0.0017 5.8E-08 52.8 2.9 23 15-37 176-198 (361)
374 1rz3_A Hypothetical protein rb 96.4 0.0023 8E-08 47.3 3.4 24 13-36 21-44 (201)
375 2bwj_A Adenylate kinase 5; pho 96.4 0.0022 7.4E-08 47.1 3.2 23 14-36 12-34 (199)
376 1in4_A RUVB, holliday junction 96.4 0.0019 6.4E-08 51.9 3.1 23 15-37 52-74 (334)
377 1sq5_A Pantothenate kinase; P- 96.3 0.0025 8.6E-08 50.6 3.7 25 13-37 79-103 (308)
378 3b9q_A Chloroplast SRP recepto 96.3 0.002 6.8E-08 51.0 3.1 22 15-36 101-122 (302)
379 1e6c_A Shikimate kinase; phosp 96.3 0.0022 7.5E-08 45.9 3.1 21 16-36 4-24 (173)
380 1xjc_A MOBB protein homolog; s 96.3 0.0023 7.9E-08 46.2 3.1 22 15-36 5-26 (169)
381 1qf9_A UMP/CMP kinase, protein 96.3 0.0029 1E-07 46.0 3.7 22 15-36 7-28 (194)
382 3d31_A Sulfate/molybdate ABC t 96.3 0.0013 4.6E-08 53.1 2.0 23 16-38 28-50 (348)
383 2z0h_A DTMP kinase, thymidylat 96.3 0.0025 8.4E-08 46.7 3.3 21 16-36 2-22 (197)
384 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0022 7.5E-08 48.1 3.1 22 16-37 25-46 (235)
385 3kta_A Chromosome segregation 96.3 0.0022 7.4E-08 46.5 2.9 21 16-36 28-48 (182)
386 1gtv_A TMK, thymidylate kinase 96.3 0.00083 2.8E-08 50.0 0.6 21 16-36 2-22 (214)
387 1p9r_A General secretion pathw 96.3 0.0021 7.1E-08 53.3 3.0 22 16-37 169-190 (418)
388 3gd7_A Fusion complex of cysti 96.3 0.0021 7.3E-08 52.7 3.0 22 16-37 49-70 (390)
389 4e22_A Cytidylate kinase; P-lo 96.3 0.0027 9.3E-08 48.8 3.4 21 15-35 28-48 (252)
390 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0027 9.2E-08 49.0 3.5 22 15-36 5-26 (260)
391 2iyv_A Shikimate kinase, SK; t 96.3 0.0024 8.2E-08 46.3 3.0 22 15-36 3-24 (184)
392 2vp4_A Deoxynucleoside kinase; 96.3 0.0019 6.5E-08 48.9 2.5 26 12-37 18-43 (230)
393 1zuh_A Shikimate kinase; alpha 96.2 0.0029 1E-07 45.2 3.3 22 15-36 8-29 (168)
394 2pez_A Bifunctional 3'-phospho 96.2 0.0027 9.2E-08 45.9 3.1 23 14-36 5-27 (179)
395 1lv7_A FTSH; alpha/beta domain 96.2 0.0025 8.7E-08 48.9 3.1 22 15-36 46-67 (257)
396 4ido_A Atlastin-1; GTPase, GTP 96.2 0.011 3.9E-07 49.2 7.1 97 11-107 64-192 (457)
397 2p65_A Hypothetical protein PF 96.2 0.0021 7.2E-08 46.3 2.5 24 14-37 43-66 (187)
398 1uj2_A Uridine-cytidine kinase 96.2 0.003 1E-07 48.4 3.5 25 12-36 20-44 (252)
399 2w58_A DNAI, primosome compone 96.2 0.003 1E-07 46.5 3.3 23 15-37 55-77 (202)
400 1vht_A Dephospho-COA kinase; s 96.2 0.0034 1.2E-07 46.9 3.6 23 14-36 4-26 (218)
401 2oap_1 GSPE-2, type II secreti 96.2 0.0024 8.4E-08 54.3 3.1 23 16-38 262-284 (511)
402 2vli_A Antibiotic resistance p 96.2 0.0018 6.2E-08 46.8 2.0 22 15-36 6-27 (183)
403 1oxx_K GLCV, glucose, ABC tran 96.2 0.0013 4.6E-08 53.2 1.3 23 16-38 33-55 (353)
404 3bos_A Putative DNA replicatio 96.2 0.0032 1.1E-07 47.4 3.3 23 14-36 52-74 (242)
405 1cr0_A DNA primase/helicase; R 96.2 0.0027 9.1E-08 49.9 2.9 22 16-37 37-58 (296)
406 3r20_A Cytidylate kinase; stru 96.1 0.0036 1.2E-07 47.6 3.3 24 13-36 8-31 (233)
407 2cvh_A DNA repair and recombin 96.1 0.0033 1.1E-07 46.8 3.1 21 16-36 22-42 (220)
408 1n0w_A DNA repair protein RAD5 96.1 0.0033 1.1E-07 47.5 3.1 22 16-37 26-47 (243)
409 1m7g_A Adenylylsulfate kinase; 96.1 0.0034 1.2E-07 46.8 3.1 23 14-36 25-47 (211)
410 1q3t_A Cytidylate kinase; nucl 96.1 0.004 1.4E-07 47.3 3.5 28 9-36 11-38 (236)
411 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0029 9.9E-08 53.1 2.9 23 15-37 139-161 (460)
412 2og2_A Putative signal recogni 96.1 0.0033 1.1E-07 51.0 3.1 23 14-36 157-179 (359)
413 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0041 1.4E-07 43.8 3.2 19 17-35 26-44 (149)
414 3n70_A Transport activator; si 96.0 0.004 1.4E-07 43.5 3.1 25 13-37 23-47 (145)
415 4eaq_A DTMP kinase, thymidylat 96.0 0.0038 1.3E-07 47.3 3.1 25 13-37 25-49 (229)
416 3nwj_A ATSK2; P loop, shikimat 96.0 0.0034 1.2E-07 48.3 2.8 22 15-36 49-70 (250)
417 2yhs_A FTSY, cell division pro 96.0 0.0036 1.2E-07 52.8 3.1 22 15-36 294-315 (503)
418 2f6r_A COA synthase, bifunctio 96.0 0.0045 1.5E-07 48.4 3.4 23 13-35 74-96 (281)
419 1nij_A Hypothetical protein YJ 96.0 0.0029 9.8E-08 50.5 2.3 23 15-37 5-27 (318)
420 2obl_A ESCN; ATPase, hydrolase 96.0 0.0041 1.4E-07 50.2 3.2 22 16-37 73-94 (347)
421 3uc9_A Increased recombination 96.0 0.0062 2.1E-07 46.0 3.8 26 12-37 27-52 (233)
422 1svm_A Large T antigen; AAA+ f 95.9 0.0041 1.4E-07 50.8 3.1 22 15-36 170-191 (377)
423 1ltq_A Polynucleotide kinase; 95.9 0.0045 1.5E-07 48.7 3.2 22 15-36 3-24 (301)
424 3b9p_A CG5977-PA, isoform A; A 95.9 0.0043 1.5E-07 48.6 3.0 23 14-36 54-76 (297)
425 3u61_B DNA polymerase accessor 95.9 0.12 4E-06 40.9 11.3 20 17-36 51-70 (324)
426 3h4m_A Proteasome-activating n 95.9 0.0046 1.6E-07 48.1 3.0 25 13-37 50-74 (285)
427 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0058 2E-07 46.8 3.5 23 14-36 39-61 (262)
428 3euj_A Chromosome partition pr 95.9 0.0046 1.6E-07 52.1 3.1 21 16-36 31-51 (483)
429 1tue_A Replication protein E1; 95.8 0.0038 1.3E-07 46.4 2.3 21 16-36 60-80 (212)
430 3t15_A Ribulose bisphosphate c 95.8 0.0053 1.8E-07 48.3 3.3 23 14-36 36-58 (293)
431 1njg_A DNA polymerase III subu 95.8 0.0051 1.7E-07 46.1 3.0 21 16-36 47-67 (250)
432 2chg_A Replication factor C sm 95.8 0.0052 1.8E-07 45.4 3.1 21 16-36 40-60 (226)
433 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0071 2.4E-07 51.8 4.2 23 16-38 49-71 (538)
434 3syl_A Protein CBBX; photosynt 95.8 0.0065 2.2E-07 47.8 3.7 25 12-36 65-89 (309)
435 3cf0_A Transitional endoplasmi 95.8 0.005 1.7E-07 48.6 3.0 23 14-36 49-71 (301)
436 2grj_A Dephospho-COA kinase; T 95.8 0.0069 2.4E-07 44.6 3.4 25 12-36 10-34 (192)
437 1l8q_A Chromosomal replication 95.7 0.0054 1.9E-07 48.8 3.0 23 15-37 38-60 (324)
438 1nlf_A Regulatory protein REPA 95.7 0.0055 1.9E-07 47.7 2.9 21 16-36 32-52 (279)
439 3ozx_A RNAse L inhibitor; ATP 95.7 0.0072 2.5E-07 51.7 3.8 23 16-38 27-49 (538)
440 3b60_A Lipid A export ATP-bind 95.7 0.0056 1.9E-07 52.9 3.1 22 16-37 371-392 (582)
441 2dpy_A FLII, flagellum-specifi 95.7 0.0061 2.1E-07 50.8 3.2 22 16-37 159-180 (438)
442 3j16_B RLI1P; ribosome recycli 95.7 0.0079 2.7E-07 52.2 4.0 23 16-38 105-127 (608)
443 1d2n_A N-ethylmaleimide-sensit 95.7 0.0091 3.1E-07 46.2 3.9 26 12-37 62-87 (272)
444 2qmh_A HPR kinase/phosphorylas 95.6 0.007 2.4E-07 44.8 3.0 23 15-37 35-57 (205)
445 3qf7_A RAD50; ABC-ATPase, ATPa 95.6 0.0071 2.4E-07 49.2 3.2 20 15-35 25-44 (365)
446 3zvl_A Bifunctional polynucleo 95.6 0.0069 2.4E-07 50.1 3.1 23 14-36 258-280 (416)
447 4fcw_A Chaperone protein CLPB; 95.6 0.01 3.5E-07 46.7 4.0 23 15-37 48-70 (311)
448 3b5x_A Lipid A export ATP-bind 95.6 0.0089 3E-07 51.7 3.9 22 16-37 371-392 (582)
449 3gmt_A Adenylate kinase; ssgci 95.5 0.0091 3.1E-07 45.2 3.4 24 13-36 7-30 (230)
450 3bk7_A ABC transporter ATP-bin 95.5 0.01 3.5E-07 51.6 4.0 23 16-38 119-141 (607)
451 1ofh_A ATP-dependent HSL prote 95.5 0.0079 2.7E-07 47.2 3.1 23 14-36 50-72 (310)
452 3ake_A Cytidylate kinase; CMP 95.5 0.0092 3.1E-07 43.9 3.3 21 16-36 4-24 (208)
453 3ozx_A RNAse L inhibitor; ATP 95.5 0.0075 2.6E-07 51.6 3.1 23 16-38 296-318 (538)
454 2yl4_A ATP-binding cassette SU 95.4 0.0058 2E-07 53.0 2.3 22 16-37 372-393 (595)
455 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0092 3.2E-07 51.1 3.4 23 16-38 314-336 (538)
456 3bk7_A ABC transporter ATP-bin 95.4 0.0085 2.9E-07 52.1 3.2 23 16-38 384-406 (607)
457 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.0084 2.9E-07 47.8 3.0 24 14-37 45-68 (322)
458 2qby_A CDC6 homolog 1, cell di 95.4 0.008 2.7E-07 48.5 2.9 23 14-36 45-67 (386)
459 2px0_A Flagellar biosynthesis 95.4 0.0082 2.8E-07 47.4 2.9 85 63-157 183-273 (296)
460 4b4t_K 26S protease regulatory 95.4 0.0085 2.9E-07 49.7 3.1 23 14-36 206-228 (428)
461 2qgz_A Helicase loader, putati 95.4 0.0097 3.3E-07 47.2 3.3 23 14-36 152-174 (308)
462 2dr3_A UPF0273 protein PH0284; 95.4 0.009 3.1E-07 45.2 3.0 21 16-36 25-45 (247)
463 3qf4_B Uncharacterized ABC tra 95.4 0.0065 2.2E-07 52.7 2.4 22 16-37 383-404 (598)
464 4a82_A Cystic fibrosis transme 95.4 0.0056 1.9E-07 52.9 2.0 22 16-37 369-390 (578)
465 1pzn_A RAD51, DNA repair and r 95.4 0.0085 2.9E-07 48.4 2.9 22 16-37 133-154 (349)
466 1sxj_C Activator 1 40 kDa subu 95.3 0.009 3.1E-07 47.9 3.0 22 16-37 48-69 (340)
467 1fnn_A CDC6P, cell division co 95.3 0.0093 3.2E-07 48.3 3.1 22 16-37 46-67 (389)
468 1vma_A Cell division protein F 95.3 0.0098 3.4E-07 47.1 3.1 86 63-158 187-284 (306)
469 1p5z_B DCK, deoxycytidine kina 95.3 0.0076 2.6E-07 46.5 2.4 25 12-36 22-46 (263)
470 2ga8_A Hypothetical 39.9 kDa p 95.3 0.013 4.5E-07 47.2 3.8 23 14-36 24-46 (359)
471 3qks_A DNA double-strand break 95.3 0.011 3.8E-07 43.8 3.2 19 17-35 26-44 (203)
472 3eie_A Vacuolar protein sortin 95.3 0.011 3.6E-07 47.2 3.2 23 14-36 51-73 (322)
473 3qf4_A ABC transporter, ATP-bi 95.3 0.0074 2.5E-07 52.3 2.4 22 16-37 371-392 (587)
474 4b4t_L 26S protease subunit RP 95.3 0.01 3.5E-07 49.4 3.1 24 13-36 214-237 (437)
475 3j16_B RLI1P; ribosome recycli 95.3 0.01 3.5E-07 51.6 3.2 22 17-38 381-402 (608)
476 4b4t_M 26S protease regulatory 95.3 0.012 4.1E-07 48.9 3.5 24 13-36 214-237 (434)
477 3crm_A TRNA delta(2)-isopenten 95.2 0.011 3.8E-07 47.1 3.2 22 15-36 6-27 (323)
478 2r62_A Cell division protease 95.2 0.0047 1.6E-07 47.6 1.0 21 16-36 46-66 (268)
479 1qhl_A Protein (cell division 95.2 0.0015 5.2E-08 49.5 -1.8 22 17-38 30-51 (227)
480 1sxj_D Activator 1 41 kDa subu 95.2 0.011 3.8E-07 47.3 3.1 22 16-37 60-81 (353)
481 3d3q_A TRNA delta(2)-isopenten 95.2 0.012 4E-07 47.3 3.1 22 15-36 8-29 (340)
482 4b4t_J 26S protease regulatory 95.1 0.012 4E-07 48.4 3.1 23 14-36 182-204 (405)
483 3tqf_A HPR(Ser) kinase; transf 95.1 0.015 5.2E-07 42.0 3.2 23 15-37 17-39 (181)
484 3uk6_A RUVB-like 2; hexameric 95.1 0.011 3.9E-07 47.6 2.9 23 15-37 71-93 (368)
485 2v1u_A Cell division control p 95.1 0.011 3.6E-07 47.9 2.7 24 13-36 43-66 (387)
486 2z4s_A Chromosomal replication 95.1 0.012 4E-07 49.1 3.0 23 14-36 130-152 (440)
487 2dhr_A FTSH; AAA+ protein, hex 95.1 0.012 4.1E-07 49.9 3.0 22 16-37 66-87 (499)
488 2bjv_A PSP operon transcriptio 95.1 0.013 4.6E-07 45.0 3.1 24 14-37 29-52 (265)
489 2qp9_X Vacuolar protein sortin 95.0 0.013 4.3E-07 47.4 3.0 23 15-37 85-107 (355)
490 3pxg_A Negative regulator of g 95.0 0.012 4.2E-07 49.4 3.0 24 14-37 201-224 (468)
491 3m6a_A ATP-dependent protease 95.0 0.013 4.3E-07 50.3 3.0 22 15-36 109-130 (543)
492 1c9k_A COBU, adenosylcobinamid 95.0 0.015 5.2E-07 42.3 3.0 21 17-37 2-22 (180)
493 2ce7_A Cell division protein F 95.0 0.014 4.6E-07 49.2 3.1 22 15-36 50-71 (476)
494 3a8t_A Adenylate isopentenyltr 95.0 0.016 5.3E-07 46.5 3.3 22 16-37 42-63 (339)
495 2iw3_A Elongation factor 3A; a 95.0 0.016 5.4E-07 52.9 3.7 24 16-39 463-486 (986)
496 2ocp_A DGK, deoxyguanosine kin 95.0 0.017 6E-07 43.8 3.5 23 15-37 3-25 (241)
497 3d8b_A Fidgetin-like protein 1 94.9 0.014 4.9E-07 47.2 3.1 24 13-36 116-139 (357)
498 3exa_A TRNA delta(2)-isopenten 94.9 0.016 5.4E-07 46.0 3.2 23 15-37 4-26 (322)
499 1um8_A ATP-dependent CLP prote 94.9 0.015 5.2E-07 47.2 3.1 23 14-36 72-94 (376)
500 3hws_A ATP-dependent CLP prote 94.9 0.016 5.4E-07 46.9 3.1 25 13-37 50-74 (363)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.6e-43 Score=267.89 Aligned_cols=166 Identities=36% Similarity=0.692 Sum_probs=145.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
.+.+||+|+|++|||||||+++|+.+.+...+.+|++.++....+.+++..+.+.||||+|++++..++..+++.++++|
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.||+.+..|+..+......+.|++|||||+|+.+.+.++.++++.+++.++++|++|||++|.||+++|+.|
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999987766689999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027417 172 VTEIYN 177 (223)
Q Consensus 172 ~~~~~~ 177 (223)
++.+..
T Consensus 171 ~~~i~~ 176 (216)
T 4dkx_A 171 AAALPG 176 (216)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 887754
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=3.7e-36 Score=228.52 Aligned_cols=173 Identities=49% Similarity=0.822 Sum_probs=158.7
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 45678999999999999999999999998888888888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999877666899999999999988778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 027417 170 TVVTEIYNILSRK 182 (223)
Q Consensus 170 ~l~~~~~~~~~~~ 182 (223)
+|.+.+.+.....
T Consensus 164 ~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 164 TMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999987765544
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-37 Score=235.79 Aligned_cols=175 Identities=58% Similarity=0.923 Sum_probs=147.9
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 34678999999999999999999999998888888888888888888889888999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999877666799999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 027417 170 TVVTEIYNILSRKVM 184 (223)
Q Consensus 170 ~l~~~~~~~~~~~~~ 184 (223)
+|++.+.+.......
T Consensus 169 ~l~~~i~~~~~~~~~ 183 (223)
T 3cpj_B 169 ELINTIYQKVSKHQM 183 (223)
T ss_dssp HHHHHHTTCC-----
T ss_pred HHHHHHHHHhhhccc
Confidence 999998877665554
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=3.6e-35 Score=222.72 Aligned_cols=177 Identities=35% Similarity=0.521 Sum_probs=149.5
Q ss_pred CCccccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417 1 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT 80 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 80 (223)
|.............++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++
T Consensus 1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (206)
T 2bov_A 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR 79 (206)
T ss_dssp ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence 444444555666789999999999999999999999888777777766554 4566778888999999999999999999
Q ss_pred HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL 159 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (223)
..+++.+|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...+++++++||+
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 159 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCC
Confidence 999999999999999999999999999999987654 3479999999999998777788999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027417 160 DSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~~~~ 178 (223)
+|.|++++|++|++.+.++
T Consensus 160 ~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 9999999999999988654
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2e-35 Score=220.24 Aligned_cols=174 Identities=46% Similarity=0.835 Sum_probs=128.9
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
...+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 34567899999999999999999999988877777788888888888888988999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999987765679999999999998777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 027417 169 QTVVTEIYNILSRK 182 (223)
Q Consensus 169 ~~l~~~~~~~~~~~ 182 (223)
++|++.+.+...+.
T Consensus 163 ~~l~~~i~~~~~~~ 176 (183)
T 2fu5_C 163 FTLARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc
Confidence 99999887765543
No 6
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.9e-35 Score=220.44 Aligned_cols=174 Identities=43% Similarity=0.756 Sum_probs=157.5
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
....+..++|+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567789999999999999999999999988888888888888888888999999999999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998776668999999999999877778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027417 168 FQTVVTEIYNILSR 181 (223)
Q Consensus 168 ~~~l~~~~~~~~~~ 181 (223)
|++|++.+.++..+
T Consensus 180 ~~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 180 FLDLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988776543
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=216.30 Aligned_cols=174 Identities=46% Similarity=0.798 Sum_probs=159.0
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
+....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 88 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence 34455778999999999999999999999998888888888888888888899999999999999999999999999999
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 99999999999999999999999999887777899999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027417 167 AFQTVVTEIYNILS 180 (223)
Q Consensus 167 ~~~~l~~~~~~~~~ 180 (223)
+|++|++.+.+...
T Consensus 169 l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 169 SFMTMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988866543
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2e-34 Score=216.55 Aligned_cols=175 Identities=51% Similarity=0.860 Sum_probs=154.5
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
+.......+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 33455778999999999999999999999998887777888888888888889989999999999999999999999999
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|+++
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999999877666899999999999987777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027417 167 AFQTVVTEIYNILSR 181 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~ 181 (223)
+|++|++.+.+++.+
T Consensus 174 l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 174 AFINTAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988776543
No 9
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=213.90 Aligned_cols=176 Identities=43% Similarity=0.741 Sum_probs=155.9
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
|....+..++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34556788999999999999999999999998888888888888888888899999999999999999999999999999
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
+|++|+|+|++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9999999999999999999999999877654 799999999999988778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027417 167 AFQTVVTEIYNILSRKV 183 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~~~ 183 (223)
+|++|.+.+.+...++.
T Consensus 161 l~~~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 161 MFNCITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999998877766554
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=219.76 Aligned_cols=173 Identities=49% Similarity=0.794 Sum_probs=147.0
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
+....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.
T Consensus 22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 34456778999999999999999999999988877777887878878888888888999999999999999999999999
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVT 165 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 165 (223)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...++ +++++||+++.|++
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999999877666899999999999987777889999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYNIL 179 (223)
Q Consensus 166 ~~~~~l~~~~~~~~ 179 (223)
++|++|++.+.+..
T Consensus 182 ~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 182 EAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886654
No 11
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=216.31 Aligned_cols=173 Identities=58% Similarity=0.947 Sum_probs=157.5
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
.+..+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34567789999999999999999999999988877788888888888888888999999999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA 178 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998776668999999999999877778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027417 168 FQTVVTEIYNILS 180 (223)
Q Consensus 168 ~~~l~~~~~~~~~ 180 (223)
|++|++.+.+++.
T Consensus 179 ~~~l~~~i~~~~~ 191 (193)
T 2oil_A 179 FETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877654
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.5e-34 Score=214.67 Aligned_cols=175 Identities=47% Similarity=0.785 Sum_probs=158.4
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
|....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 34456788999999999999999999999998888888888888888888889988999999999999999999999999
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 99999999999999999999999988776666899999999999987677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027417 167 AFQTVVTEIYNILSR 181 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~ 181 (223)
+|++|++.+.+....
T Consensus 163 l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 163 AFVQCARKILNKIES 177 (186)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999988776543
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.3e-34 Score=214.93 Aligned_cols=173 Identities=45% Similarity=0.779 Sum_probs=156.9
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
.....+..++|+|+|++|||||||+++|++..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 94 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG 94 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence 34455678999999999999999999999998887778888888888888888889999999999999999999999999
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|+++
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999999999877656799999999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027417 167 AFQTVVTEIYNIL 179 (223)
Q Consensus 167 ~~~~l~~~~~~~~ 179 (223)
+|++|++.+.+.+
T Consensus 175 l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 175 VFERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 14
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-34 Score=215.62 Aligned_cols=172 Identities=43% Similarity=0.773 Sum_probs=157.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 45789999999999999999999999988877788888888888888898999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998776567999999999999887788889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027417 171 VVTEIYNILSRK 182 (223)
Q Consensus 171 l~~~~~~~~~~~ 182 (223)
|++.+.+.+...
T Consensus 165 l~~~i~~~~~~~ 176 (203)
T 1zbd_A 165 LVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999888766544
No 15
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.1e-34 Score=218.77 Aligned_cols=172 Identities=35% Similarity=0.628 Sum_probs=150.3
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
.....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45678999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCCCH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSSNV 164 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 164 (223)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988765432 468999999999998 35667788888887 66789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027417 165 TAAFQTVVTEIYNILSRK 182 (223)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~ 182 (223)
+++|++|++.+.++....
T Consensus 163 ~~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999988765443
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=5.8e-34 Score=211.10 Aligned_cols=168 Identities=49% Similarity=0.863 Sum_probs=153.5
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34678999999999999999999999998877778888888888888889889999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877666899999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027417 170 TVVTEIYN 177 (223)
Q Consensus 170 ~l~~~~~~ 177 (223)
+|++.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99987753
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=9.8e-34 Score=210.47 Aligned_cols=169 Identities=41% Similarity=0.732 Sum_probs=152.7
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34567799999999999999999999999888877788888888888888888999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999999999987766689999999999998777888999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027417 169 QTVVTEIYN 177 (223)
Q Consensus 169 ~~l~~~~~~ 177 (223)
++|++.+.+
T Consensus 167 ~~l~~~~~~ 175 (181)
T 2efe_B 167 YEIARRLPR 175 (181)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHHHHh
Confidence 999876643
No 18
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=216.26 Aligned_cols=173 Identities=49% Similarity=0.800 Sum_probs=146.4
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
...+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 33567899999999999999999999998888777888888888888888988899999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999877766689999999999998767788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027417 169 QTVVTEIYNILSR 181 (223)
Q Consensus 169 ~~l~~~~~~~~~~ 181 (223)
++|++.+.++...
T Consensus 180 ~~l~~~i~~~~~~ 192 (200)
T 2o52_A 180 LKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999988776543
No 19
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=215.09 Aligned_cols=171 Identities=42% Similarity=0.774 Sum_probs=147.5
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
.++.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34567789999999999999999999999888777788888888888888898899999999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTA 166 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~ 166 (223)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++.++... +++++++||++|.|+++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999988776668999999999999877788888999998875 78999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 167 AFQTVVTEIYNI 178 (223)
Q Consensus 167 ~~~~l~~~~~~~ 178 (223)
+|++|++.+.++
T Consensus 180 l~~~l~~~i~~~ 191 (192)
T 2il1_A 180 IFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 20
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.4e-33 Score=206.13 Aligned_cols=165 Identities=41% Similarity=0.700 Sum_probs=152.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
..+.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 34679999999999999999999999988888888888888888888899999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|+|++++.+++.+..|+..+........|+++|+||+|+.+.+++..+++..++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998776668999999999999877778889999999999999999999999999999999
Q ss_pred HHHHH
Q 027417 171 VVTEI 175 (223)
Q Consensus 171 l~~~~ 175 (223)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=3.9e-34 Score=210.45 Aligned_cols=166 Identities=38% Similarity=0.689 Sum_probs=144.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999888777788888888878888888889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999887665557999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHH
Q 027417 171 VVTEIY 176 (223)
Q Consensus 171 l~~~~~ 176 (223)
|++.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 22
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.3e-35 Score=218.92 Aligned_cols=172 Identities=44% Similarity=0.765 Sum_probs=156.8
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
...+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 34567899999999999999999999998887777788888888888888888889999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988776689999999999998778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027417 169 QTVVTEIYNILS 180 (223)
Q Consensus 169 ~~l~~~~~~~~~ 180 (223)
++|++.+.+.+.
T Consensus 178 ~~l~~~i~~~~~ 189 (191)
T 3dz8_A 178 ERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 999998876543
No 23
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.4e-33 Score=207.21 Aligned_cols=164 Identities=43% Similarity=0.719 Sum_probs=150.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45799999999999999999999998888777888888888888888988999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999877766689999999999998767788889999999999999999999999999999999
Q ss_pred HHHH
Q 027417 172 VTEI 175 (223)
Q Consensus 172 ~~~~ 175 (223)
++.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8654
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.6e-33 Score=208.75 Aligned_cols=168 Identities=31% Similarity=0.472 Sum_probs=151.0
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......+||+|+|++|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3456689999999999999999999999888888888877666 667778889999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC-CCCCHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL-DSSNVTA 166 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~ 166 (223)
++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++++.++..++++++++||+ ++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 999999999999999999999988653 44579999999999998878899999999999999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 027417 167 AFQTVVTEIYN 177 (223)
Q Consensus 167 ~~~~l~~~~~~ 177 (223)
+|++|++.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999987754
No 25
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-33 Score=208.74 Aligned_cols=169 Identities=46% Similarity=0.753 Sum_probs=145.0
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
+..+..++|+|+|++|||||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34577899999999999999999999998875 35667778888777778899899999999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988776668999999999999887788889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 168 FQTVVTEIYN 177 (223)
Q Consensus 168 ~~~l~~~~~~ 177 (223)
|++|.+.+.+
T Consensus 165 ~~~l~~~~~~ 174 (180)
T 2g6b_A 165 FTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 26
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.8e-34 Score=213.84 Aligned_cols=170 Identities=39% Similarity=0.667 Sum_probs=152.3
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
+.+..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 44556778999999999999999999999998877788888888888888888888999999999999999999999999
Q ss_pred CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|+++
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 99999999999999999999999999877666899999999999987677888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 167 AFQTVVTEIY 176 (223)
Q Consensus 167 ~~~~l~~~~~ 176 (223)
+|++|.+.+.
T Consensus 176 l~~~l~~~i~ 185 (192)
T 2fg5_A 176 LFQGISRQIP 185 (192)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=8e-34 Score=208.68 Aligned_cols=165 Identities=50% Similarity=0.848 Sum_probs=144.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998877778888878877888888888999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|+|++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++..+++..+++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999987766689999999999994 456778889999999999999999999999999999999
Q ss_pred HHHHHH
Q 027417 173 TEIYNI 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
+.+.++
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888654
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.5e-33 Score=208.07 Aligned_cols=171 Identities=31% Similarity=0.513 Sum_probs=150.6
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
.......++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 345567899999999999999999999998887777788776655 6667788889999999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
|++|+|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|+++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 999999999999999999999988843 3455799999999999987778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027417 167 AFQTVVTEIYNIL 179 (223)
Q Consensus 167 ~~~~l~~~~~~~~ 179 (223)
+|++|.+.+.+..
T Consensus 162 l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 162 AFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876543
No 29
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-33 Score=206.28 Aligned_cols=163 Identities=44% Similarity=0.750 Sum_probs=149.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
+.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999998887788888888888888889999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC---cccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA---REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
|+|++++.+++.+..|+..+......+.|+++|+||+|+.+. +++..+++..++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988776668999999999999765 66788889999999999999999999999999999
Q ss_pred HHHHHH
Q 027417 170 TVVTEI 175 (223)
Q Consensus 170 ~l~~~~ 175 (223)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998654
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=4.1e-33 Score=209.14 Aligned_cols=172 Identities=36% Similarity=0.672 Sum_probs=152.9
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeE-EEEEEECCE---------EEEEEEEeCCCchhhhch
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQ-TQKMDINGK---------EVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~G~~~~~~~ 79 (223)
..+..++|+|+|++|||||||+++|.+..+...+.++.+.++. ...+.+.+. .+.+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4577899999999999999999999998887777888887776 556666655 789999999999999999
Q ss_pred hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
+..+++.+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++...+++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999876643 57999999999999876778889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Q 027417 159 LDSSNVTAAFQTVVTEIYNILSR 181 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~~~~~~~~ 181 (223)
+++.|++++|++|.+.+.++..+
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988766543
No 31
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=205.87 Aligned_cols=168 Identities=30% Similarity=0.415 Sum_probs=137.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--hhchhHhhhcCCCE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--FRAVTSAYYRGAVG 89 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~~~~~~~~d~ 89 (223)
...++|+|+|++|||||||+++|.+..+...+. +.+.+.....+.+++..+.+.+|||||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 356999999999999999999999887755433 457777777788899999999999999887 56667788899999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887652 3479999999999998877888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027417 169 QTVVTEIYNILS 180 (223)
Q Consensus 169 ~~l~~~~~~~~~ 180 (223)
++|++.+.++..
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999988865443
No 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.5e-33 Score=206.86 Aligned_cols=165 Identities=35% Similarity=0.634 Sum_probs=150.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999886654 478999999999998767788899999999999999999999999999999999
Q ss_pred HHHHHH
Q 027417 172 VTEIYN 177 (223)
Q Consensus 172 ~~~~~~ 177 (223)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 987753
No 33
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.2e-33 Score=208.77 Aligned_cols=165 Identities=31% Similarity=0.483 Sum_probs=147.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4679999999999999999999998888888888877766 667778889999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 999999999999999999888655 3447999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027417 171 VVTEIYN 177 (223)
Q Consensus 171 l~~~~~~ 177 (223)
|++.+.+
T Consensus 163 l~~~~~~ 169 (181)
T 3t5g_A 163 IILEAEK 169 (181)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9987744
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=211.98 Aligned_cols=168 Identities=28% Similarity=0.369 Sum_probs=142.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc-hhHhhhcCCC
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-VTSAYYRGAV 88 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d 88 (223)
..+..++|+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345679999999999999999999976544333444556666677778899999999999999987664 7778889999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998876543 47999999999999877788899999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 168 FQTVVTEIYN 177 (223)
Q Consensus 168 ~~~l~~~~~~ 177 (223)
|++|++.+.+
T Consensus 179 f~~l~~~i~~ 188 (195)
T 3cbq_A 179 FEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 35
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=8.4e-33 Score=204.72 Aligned_cols=167 Identities=38% Similarity=0.691 Sum_probs=146.3
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
.....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999988887888888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCCCH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSSNV 164 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 164 (223)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999998865532 578999999999997 46678888898888 56788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027417 165 TAAFQTVVTEIYN 177 (223)
Q Consensus 165 ~~~~~~l~~~~~~ 177 (223)
+++|++|++.+++
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 36
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=4.4e-33 Score=208.77 Aligned_cols=166 Identities=39% Similarity=0.701 Sum_probs=147.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-chhHhhhcCCCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-AVTSAYYRGAVG 89 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~ 89 (223)
....+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3557999999999999999999999988888788888888888888889888999999999999988 888999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC---CCHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS---SNVT 165 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~ 165 (223)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.++...+++++++||+++ .|++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999987664 557999999999999877788899999999999999999999999 9999
Q ss_pred HHHHHHHHHHH
Q 027417 166 AAFQTVVTEIY 176 (223)
Q Consensus 166 ~~~~~l~~~~~ 176 (223)
++|++|++.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999987764
No 37
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.5e-33 Score=207.49 Aligned_cols=168 Identities=45% Similarity=0.796 Sum_probs=151.9
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 34456799999999999999999999999888888888888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +.+..+++..++...+++++++||+++.|++++
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 9999999999999999999999987764 34789999999999954 567788899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 168 FQTVVTEIYN 177 (223)
Q Consensus 168 ~~~l~~~~~~ 177 (223)
|++|++.+.+
T Consensus 169 ~~~l~~~~~~ 178 (195)
T 1x3s_A 169 FEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.9e-33 Score=207.31 Aligned_cols=165 Identities=38% Similarity=0.709 Sum_probs=151.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999998888888888888888888888999899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999877655679999999999998777788899999999999999999999999999999999
Q ss_pred HHHHH
Q 027417 172 VTEIY 176 (223)
Q Consensus 172 ~~~~~ 176 (223)
.+.+.
T Consensus 172 ~~~~~ 176 (179)
T 2y8e_A 172 AAALP 176 (179)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 87653
No 39
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.1e-33 Score=214.02 Aligned_cols=173 Identities=38% Similarity=0.712 Sum_probs=151.5
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE----------EEEEEEEeCCCchhhhc
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK----------EVKAQIWDTAGQERFRA 78 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~G~~~~~~ 78 (223)
...+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++. .+.+.||||||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 34567899999999999999999999998887766777777777766766655 78899999999999999
Q ss_pred hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q 027417 79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (223)
.+..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++|
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 999999999999999999999999999999988766543 5799999999999987777888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhh
Q 027417 158 ALDSSNVTAAFQTVVTEIYNILSR 181 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~~~~~~~ 181 (223)
|+++.|++++|++|++.+.+++..
T Consensus 180 a~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 180 AATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988765543
No 40
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.3e-32 Score=205.69 Aligned_cols=165 Identities=19% Similarity=0.343 Sum_probs=142.5
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
.......+||+|+|++|||||||+++|+++.+...+.++ +..+ ...+.+++..+.+.+|||+|++.+. +++.+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 345567899999999999999999999999887777776 3333 4777889999999999999988776 77889
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHcC-CeEEEEccCCCCC
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLK--DAREVTTAEGKALAEAQG-LFFMETSALDSSN 163 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 163 (223)
|++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..++...+ ++|+++||++|.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999999977643 479999999999994 456788999999999997 8999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIYNIL 179 (223)
Q Consensus 164 i~~~~~~l~~~~~~~~ 179 (223)
++++|++|++.+.+.+
T Consensus 167 v~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 167 VERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 41
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3.8e-33 Score=205.11 Aligned_cols=165 Identities=28% Similarity=0.362 Sum_probs=133.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc-hhHhhhcCCCEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-VTSAYYRGAVGALL 92 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~ 92 (223)
.+||+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777666666666777777888899999999999999988766 67778899999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999876543 479999999999998778899999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027417 172 VTEIYNI 178 (223)
Q Consensus 172 ~~~~~~~ 178 (223)
++.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9877543
No 42
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=210.00 Aligned_cols=165 Identities=30% Similarity=0.467 Sum_probs=141.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
.....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+ ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999988877888877665 445667888999999999999888775 678899999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc-CCCCCHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA-LDSSNVT 165 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~ 165 (223)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++|| +++.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999999987653 247999999999999877788899999999999999999999 8999999
Q ss_pred HHHHHHHHHHH
Q 027417 166 AAFQTVVTEIY 176 (223)
Q Consensus 166 ~~~~~l~~~~~ 176 (223)
++|+.|++.+.
T Consensus 175 ~lf~~l~~~i~ 185 (187)
T 3c5c_A 175 HVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 43
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=6e-33 Score=208.88 Aligned_cols=168 Identities=30% Similarity=0.526 Sum_probs=147.3
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......+||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 44567899999999999999999999999887777888776655 45678889999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027417 89 GALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA--REVTTAEGKALAEAQGLF-FMETSALDSSNV 164 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 164 (223)
++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++..++...+++ ++++||++|.|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 99999999999999997 789888876643 6999999999999753 678889999999999998 999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027417 165 TAAFQTVVTEIYNI 178 (223)
Q Consensus 165 ~~~~~~l~~~~~~~ 178 (223)
+++|++|++.+.+.
T Consensus 176 ~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 176 NEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887543
No 44
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=212.15 Aligned_cols=166 Identities=39% Similarity=0.688 Sum_probs=139.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45579999999999999999999999888777778888888888888899999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC------CCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK------DAREVTTAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..+++..++...+++++++||++|.|+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 999999999999999999999887766679999999999986 34667888999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 165 TAAFQTVVTEIY 176 (223)
Q Consensus 165 ~~~~~~l~~~~~ 176 (223)
+++|++|++.+.
T Consensus 185 ~el~~~l~~~i~ 196 (199)
T 2p5s_A 185 VEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 45
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-32 Score=209.23 Aligned_cols=169 Identities=48% Similarity=0.835 Sum_probs=150.9
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
.....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 44567999999999999999999999988877888888888888888889888999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++++|+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999887766679999999999994 466778888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 170 TVVTEIYNIL 179 (223)
Q Consensus 170 ~l~~~~~~~~ 179 (223)
+|.+.+.+..
T Consensus 175 ~l~~~~~~~~ 184 (213)
T 3cph_A 175 TLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998886654
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.6e-33 Score=208.79 Aligned_cols=167 Identities=33% Similarity=0.525 Sum_probs=146.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
....++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34679999999999999999999999887666667777777777887876 67899999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
+|+|||++++.+++.+..|+..+.... ....|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999998886642 12344889999999987777888999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 167 AFQTVVTEIYN 177 (223)
Q Consensus 167 ~~~~l~~~~~~ 177 (223)
+|++|++.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999987743
No 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3e-32 Score=205.95 Aligned_cols=166 Identities=39% Similarity=0.679 Sum_probs=147.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEE----------------------------
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE---------------------------- 62 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 62 (223)
.+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3457999999999999999999999998887788888888777777776654
Q ss_pred ---------EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 63 ---------VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 63 ---------~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
+.+.+|||||++.+...+..+++.+|++|+|+|++++.+++.+..|+..+..... .|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence 8899999999999999999999999999999999999999999999999877653 99999999999 55
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 179 (223)
.+.+..++++.++...+++++++||+++.|++++|++|++.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 5678889999999999999999999999999999999999887654
No 48
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.8e-33 Score=213.57 Aligned_cols=176 Identities=29% Similarity=0.457 Sum_probs=118.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCccceeEeEEEEEEECCE--EEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD--EFYPNSKSTIGVEFQTQKMDINGK--EVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
...++|+|+|++|||||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999988 676677777777777777778876 88999999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCC---CCCcEEEEEeCCCCCC-CcccCHHHHHHHHHHcCCeEEEEccCC-CC
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSD---MNVVTILVGNKSDLKD-AREVTTAEGKALAEAQGLFFMETSALD-SS 162 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 162 (223)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++..++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999987765 5899999999999987 677888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhH
Q 027417 163 NVTAAFQTVVTEIYNILSRKVMISQ 187 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~~~~~~~~~~ 187 (223)
|++++|++|++.+.+...++.....
T Consensus 178 gi~~l~~~i~~~~~~~~~~~~~~~~ 202 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDKVAAFQ 202 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999887776654443
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=5.6e-33 Score=206.30 Aligned_cols=170 Identities=33% Similarity=0.626 Sum_probs=134.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
.....++|+|+|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45668999999999999999999999988887788888887777777776 56688999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCC-cccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDLKDA-REVTTAEGKALAE-AQGLFFMETSALDSS 162 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 162 (223)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+. +.+..+++..++. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999988865432 57899999999999543 4567888888888 567889999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~~ 179 (223)
|++++|++|++.+.++.
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887653
No 50
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2.1e-32 Score=200.54 Aligned_cols=163 Identities=31% Similarity=0.411 Sum_probs=123.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.+||+|+|++|||||||+++|.+..... ..++.+.++ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 5899999999999999999999766543 334445444 45667889999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 9999999999999999988765 345799999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027417 173 TEIYNI 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887654
No 51
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=7.3e-33 Score=211.82 Aligned_cols=168 Identities=27% Similarity=0.469 Sum_probs=144.9
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
.+....+||+|+|++|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3445679999999999999999999999988888888877665 455667778899999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEE
Q 027417 89 GALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFM 154 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 154 (223)
++|+|||++++.+++. +..|+..+..... +.|+++|+||+|+.+. +.+..+++..++...++ +|+
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999 6999999987753 7999999999999753 67889999999999999 899
Q ss_pred EEccCCCCC-HHHHHHHHHHHHHHH
Q 027417 155 ETSALDSSN-VTAAFQTVVTEIYNI 178 (223)
Q Consensus 155 ~~Sa~~~~~-i~~~~~~l~~~~~~~ 178 (223)
+|||++|.| ++++|+.|++.+.+.
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EeccCCCcccHHHHHHHHHHHHhcc
Confidence 999999998 999999999887644
No 52
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=3.9e-32 Score=201.48 Aligned_cols=164 Identities=21% Similarity=0.344 Sum_probs=138.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...+||+|+|++|||||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+|||+|++. ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 456999999999999999999999988865 667766444 56677888899999999999876 45778899999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH---SDMNVVTILVGNKSDLK--DAREVTTAEGKALAEAQ-GLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 165 (223)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999999999999976655433 33579999999999994 44678889999998876 6889999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027417 166 AAFQTVVTEIYNILSRK 182 (223)
Q Consensus 166 ~~~~~l~~~~~~~~~~~ 182 (223)
++|++|++.+.+.....
T Consensus 158 ~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999988765544
No 53
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.7e-33 Score=209.86 Aligned_cols=167 Identities=32% Similarity=0.510 Sum_probs=143.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
....+||+|+|++|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 35679999999999999999999999998888888877665 55556667778999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
|+|||++++.+++.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999998765 334689999999999988788899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027417 170 TVVTEIYNI 178 (223)
Q Consensus 170 ~l~~~~~~~ 178 (223)
+|++.+.+.
T Consensus 180 ~l~~~i~~~ 188 (201)
T 3oes_A 180 KVIQEIARV 188 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999887544
No 54
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=9.2e-32 Score=201.02 Aligned_cols=167 Identities=33% Similarity=0.508 Sum_probs=144.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999888777777754 455566778889999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+ +....+++..++...+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999988764 345799999999999974 567788899999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027417 171 VVTEIYNILS 180 (223)
Q Consensus 171 l~~~~~~~~~ 180 (223)
|.+.+.+...
T Consensus 160 l~~~~~~~~~ 169 (189)
T 4dsu_A 160 LVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9988865543
No 55
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.2e-32 Score=200.28 Aligned_cols=163 Identities=36% Similarity=0.567 Sum_probs=142.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..++|+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999888777777766544 4456678888999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 999999999999999999887653 3479999999999998777788899999999999999999999999999999999
Q ss_pred HHHHH
Q 027417 172 VTEIY 176 (223)
Q Consensus 172 ~~~~~ 176 (223)
++.+.
T Consensus 162 ~~~i~ 166 (168)
T 1u8z_A 162 MREIR 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3.9e-32 Score=202.62 Aligned_cols=168 Identities=36% Similarity=0.535 Sum_probs=147.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 45579999999999999999999999888777777765544 45566788889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|++++|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 99999999999999999998886653 34799999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 170 TVVTEIYNIL 179 (223)
Q Consensus 170 ~l~~~~~~~~ 179 (223)
+|.+.+.++.
T Consensus 174 ~l~~~i~~~~ 183 (187)
T 2a9k_A 174 DLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999886654
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.6e-32 Score=199.21 Aligned_cols=161 Identities=32% Similarity=0.523 Sum_probs=143.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.++|+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999888777777766554 35566777889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++... +++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999888654 3457999999999999877778889999999887 7899999999999999999999
Q ss_pred HHHH
Q 027417 172 VTEI 175 (223)
Q Consensus 172 ~~~~ 175 (223)
++.+
T Consensus 162 ~~~i 165 (167)
T 1c1y_A 162 VRQI 165 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8766
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=205.12 Aligned_cols=170 Identities=28% Similarity=0.478 Sum_probs=139.3
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......++|+|+|++|||||||+++|.++.+...+.++++..+ ...+.+++..+.+.+|||||++.+..++..+++++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3456689999999999999999999999887777777766444 456677888899999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEE
Q 027417 89 GALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFM 154 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 154 (223)
++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.. .+.+..+++..++...++ +++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999996 79998877654 799999999999875 256778889999999887 899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417 155 ETSALDSSNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 155 ~~Sa~~~~~i~~~~~~l~~~~~~~~~ 180 (223)
++||++|.|++++|++|++.+.+...
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999998876544
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=3e-32 Score=199.37 Aligned_cols=162 Identities=35% Similarity=0.529 Sum_probs=144.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.++|+|+|++|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999988877777775543 466677888889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 99999999999999998886553 35799999999999987778888999999999999999999999999999999998
Q ss_pred HHHH
Q 027417 173 TEIY 176 (223)
Q Consensus 173 ~~~~ 176 (223)
+.+.
T Consensus 162 ~~~~ 165 (167)
T 1kao_A 162 RQMN 165 (167)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 60
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.4e-32 Score=206.87 Aligned_cols=168 Identities=28% Similarity=0.375 Sum_probs=138.7
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhchhHhhhcCC
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVTSAYYRGA 87 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~ 87 (223)
.....+||+|+|++|||||||+++|.+.... ....++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 3456799999999999999999999964331 22233457677777778899999999999999876 455666778899
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..++++.++...+++|++|||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999998887654 234799999999999987677888888889999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 167 AFQTVVTEIYN 177 (223)
Q Consensus 167 ~~~~l~~~~~~ 177 (223)
+|++|++.+..
T Consensus 193 lf~~l~~~i~~ 203 (211)
T 2g3y_A 193 LFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987743
No 61
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-32 Score=204.70 Aligned_cols=166 Identities=34% Similarity=0.458 Sum_probs=145.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4569999999999999999999999988777777766554 45567788899999999999887 777888999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC-CHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS-NVTAAFQ 169 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~ 169 (223)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 999999999999999999888764 33579999999999998777888999999999999999999999999 9999999
Q ss_pred HHHHHHHHHH
Q 027417 170 TVVTEIYNIL 179 (223)
Q Consensus 170 ~l~~~~~~~~ 179 (223)
+|++.+.+..
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9998886543
No 62
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-32 Score=205.55 Aligned_cols=163 Identities=30% Similarity=0.418 Sum_probs=141.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
....++|+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34569999999999999999999999888777777766544 34556788889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 91 LLVYDISRRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999999888877765432 3689999999999975 5677888899999999999999999999999999
Q ss_pred HHHHHHH
Q 027417 169 QTVVTEI 175 (223)
Q Consensus 169 ~~l~~~~ 175 (223)
++|++.+
T Consensus 163 ~~l~~~~ 169 (199)
T 2gf0_A 163 QELLTLE 169 (199)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998655
No 63
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.9e-33 Score=214.29 Aligned_cols=173 Identities=25% Similarity=0.454 Sum_probs=146.4
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
......+||+|+|++|||||||+++|+++.+...+.++.+.+......... +..+.+.+|||||++.+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 345668999999999999999999999888877777777777666665554 3448899999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999999998776667999999999999887788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027417 168 FQTVVTEIYNILSR 181 (223)
Q Consensus 168 ~~~l~~~~~~~~~~ 181 (223)
|++|++.+.+....
T Consensus 166 ~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 166 FLHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHHHCCTTC
T ss_pred HHHHHHHHhccccc
Confidence 99999887655433
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.8e-32 Score=202.41 Aligned_cols=164 Identities=27% Similarity=0.505 Sum_probs=144.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35679999999999999999999999888777777766554 44566777889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEE
Q 027417 91 LLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMET 156 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 156 (223)
|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..+++..++...++ +++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999997 79998877654 7999999999999763 46788899999999998 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~ 176 (223)
||++|.|++++|++|++.++
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 65
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-32 Score=209.67 Aligned_cols=166 Identities=30% Similarity=0.554 Sum_probs=142.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999888777777776554 445667888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--------cCHHHHHHHHHHcCC-eEEEEccCCC
Q 027417 92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDARE--------VTTAEGKALAEAQGL-FFMETSALDS 161 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (223)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+. +..+++..++..+++ +++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999996 89999877654 799999999999876543 378888999999996 8999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 162 ~~i~~~~~~l~~~~~~~~ 179 (223)
.|++++|++|++.+.+..
T Consensus 165 ~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHhhhh
Confidence 999999999998876543
No 66
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-32 Score=206.34 Aligned_cols=169 Identities=31% Similarity=0.537 Sum_probs=143.3
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
|....+..+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 334456789999999999999999999999988777777776655 4456677788999999999999999999999999
Q ss_pred CCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-Ce
Q 027417 87 AVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LF 152 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 152 (223)
+|++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++..+++.++ ++
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999999999 789988876653 7999999999999742 4578888999999887 68
Q ss_pred EEEEccC-CCCCHHHHHHHHHHHHHH
Q 027417 153 FMETSAL-DSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 153 ~~~~Sa~-~~~~i~~~~~~l~~~~~~ 177 (223)
+++|||+ ++.|++++|+.|++.+++
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999988764
No 67
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=4.9e-32 Score=202.32 Aligned_cols=164 Identities=31% Similarity=0.542 Sum_probs=142.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999888777777766555 34566788889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEE
Q 027417 91 LLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LFFMET 156 (223)
Q Consensus 91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 156 (223)
|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++..+++.++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 789988876643 7999999999999742 5678889999999887 689999
Q ss_pred ccC-CCCCHHHHHHHHHHHHH
Q 027417 157 SAL-DSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 157 Sa~-~~~~i~~~~~~l~~~~~ 176 (223)
||+ ++.|++++|+.|++.++
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHHHHh
Confidence 999 68999999999998775
No 68
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.4e-31 Score=201.35 Aligned_cols=165 Identities=29% Similarity=0.499 Sum_probs=144.7
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
-....+||+|+|++|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 3467899999999999999999999998887777777766654 346678888999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEE
Q 027417 90 ALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFME 155 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 155 (223)
+|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++..++...++ ++++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 9999999999999999 688888876543 7999999999999764 45778889999999998 8999
Q ss_pred EccCCCCCHHHHHHHHHHHHH
Q 027417 156 TSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
+||++|.|++++|++|++.++
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998775
No 69
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=4.6e-31 Score=197.74 Aligned_cols=169 Identities=33% Similarity=0.503 Sum_probs=135.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|.+|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4569999999999999999999999887776666655443 456677888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +....++++++++..+++++++||+++.|++++|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998886653 34699999999999976 567788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027417 171 VVTEIYNILSRK 182 (223)
Q Consensus 171 l~~~~~~~~~~~ 182 (223)
|++.+.+.+.++
T Consensus 177 l~~~~~~~~~~~ 188 (190)
T 3con_A 177 LVREIRQYRMKK 188 (190)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHhh
Confidence 999887655443
No 70
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.1e-31 Score=200.10 Aligned_cols=163 Identities=29% Similarity=0.534 Sum_probs=143.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3569999999999999999999999888777777765444 455677889999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEc
Q 027417 92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETS 157 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 157 (223)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..+++..++...++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999997 79888877654 7999999999998753 46778889999999997 899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 027417 158 ALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~~ 176 (223)
|++|.|++++|++|++.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHS
T ss_pred CCCccCHHHHHHHHHHHHh
Confidence 9999999999999998774
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=9.9e-32 Score=205.47 Aligned_cols=166 Identities=33% Similarity=0.535 Sum_probs=124.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999888777777755433 455677888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEEc
Q 027417 92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQGL-FFMETS 157 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 157 (223)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.... .+..+++..+++..++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999996 79988876653 68999999999997642 5778889999999998 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 027417 158 ALDSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~~~~~ 179 (223)
|++|.|++++|++|++.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998886543
No 72
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=218.28 Aligned_cols=168 Identities=48% Similarity=0.823 Sum_probs=143.1
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
...+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 34567899999999999999999999998887777788888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988777789999999999998777777778888999999999999999999999999
Q ss_pred HHHHHHHH
Q 027417 169 QTVVTEIY 176 (223)
Q Consensus 169 ~~l~~~~~ 176 (223)
++|++.+.
T Consensus 188 ~~l~~~l~ 195 (199)
T 3l0i_B 188 MTMAAEIK 195 (199)
T ss_dssp HHHTTTTT
T ss_pred HHHHHHHH
Confidence 99987654
No 73
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=7.2e-31 Score=197.51 Aligned_cols=167 Identities=28% Similarity=0.378 Sum_probs=137.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhchhHhhhcCCC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDE--FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVTSAYYRGAV 88 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d 88 (223)
...+||+|+|++|||||||+++|.+.. +... .++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999999633 2333 33456677677778899999999999999766 4556777888999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
++|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++|++|||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999999998887654 3347899999999999876778888888888889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 168 FQTVVTEIYNIL 179 (223)
Q Consensus 168 ~~~l~~~~~~~~ 179 (223)
|++|++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999998886544
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=2.6e-31 Score=195.47 Aligned_cols=162 Identities=30% Similarity=0.403 Sum_probs=140.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..++|+|+|++|||||||+++|.++.+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 358999999999999999999999887766667766544 3445678888899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..+++..++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999999988876542 236899999999999877778888889999999999999999999999999999
Q ss_pred HHHHH
Q 027417 171 VVTEI 175 (223)
Q Consensus 171 l~~~~ 175 (223)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98654
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=1.1e-30 Score=190.80 Aligned_cols=161 Identities=34% Similarity=0.530 Sum_probs=141.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 93 (223)
.++|+++|++|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 4799999999999999999999988777666765543 355666788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +....+++..+++..+++++++||+++.|++++|++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999886653 34799999999999876 56678889999999999999999999999999999999
Q ss_pred HHHH
Q 027417 173 TEIY 176 (223)
Q Consensus 173 ~~~~ 176 (223)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=1e-31 Score=202.11 Aligned_cols=167 Identities=19% Similarity=0.288 Sum_probs=138.0
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CCccceeEeEEEEE-EECCEEEEEEEEeCCCchhhh
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPN-----------SKSTIGVEFQTQKM-DINGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G~~~~~ 77 (223)
..+..+||+|+|++|||||||++.+.+. +... ..++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4567899999999999999999877654 3333 23344444444334 456778899999999999999
Q ss_pred chhHhhhcCCCEEEEEEECC------CHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027417 78 AVTSAYYRGAVGALLVYDIS------RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL 151 (223)
Q Consensus 78 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (223)
..+..+++++|++|+|||++ +..+++.+..|+..+.. ...+.|+++|+||+|+.+ .+..+++..++...++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence 99999999999999999999 56788888889888743 334799999999999975 3788999999999999
Q ss_pred -eEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417 152 -FFMETSALDSSNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 152 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 180 (223)
+++++||++|.|++++|++|++.+.+...
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999998877654
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.2e-30 Score=198.36 Aligned_cols=164 Identities=30% Similarity=0.507 Sum_probs=138.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...+||+|+|++|||||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 456899999999999999999999988877777776665543 3667888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEc
Q 027417 92 LVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETS 157 (223)
Q Consensus 92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 157 (223)
+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++..++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999999 688888876543 7999999999999754 45778888999999988 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027417 158 ALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~~~ 177 (223)
|++|.|++++|++|++.+++
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987753
No 78
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=6e-30 Score=193.37 Aligned_cols=169 Identities=65% Similarity=1.044 Sum_probs=150.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999998887777888888888888889999999999999999999888999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|+|+++..+++.+..|+..+......+.|+++++||+|+.+.+.+..++++.++...++.++++||+++.|++++|+.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988766555578999999999998767778888999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 027417 172 VTEIYNILS 180 (223)
Q Consensus 172 ~~~~~~~~~ 180 (223)
.+.+.+...
T Consensus 163 ~~~~~~~~~ 171 (199)
T 2f9l_A 163 LTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998876553
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=8.5e-32 Score=200.16 Aligned_cols=163 Identities=30% Similarity=0.575 Sum_probs=126.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...+||+|+|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45699999999999999999999998877666666554332 22345666788889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----------cCHHHHHHHHHHcCC-eEEEEccC
Q 027417 92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDARE----------VTTAEGKALAEAQGL-FFMETSAL 159 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (223)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+. +..+++..++...++ +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999997 79998877654 799999999999876544 477888999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027417 160 DSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~~ 176 (223)
+|.|++++|++|++.++
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987663
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=2.9e-31 Score=200.09 Aligned_cols=169 Identities=17% Similarity=0.262 Sum_probs=129.3
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR 85 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 85 (223)
+..+....++|+|+|++|||||||+++|++..+.. .+.++.+..... +. ...+.+.+|||||++.+..++..+++
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--FE--KGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--EE--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 44566778999999999999999999999998877 677887754433 22 34478899999999999999999999
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC--------CCCcEEEEEeCCCCCCCcc---cCHHHHHHH-HHHcCCeE
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSD--------MNVVTILVGNKSDLKDARE---VTTAEGKAL-AEAQGLFF 153 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~-~~~~~~~~ 153 (223)
.+|++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+... +........ +...++++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEE
Confidence 99999999999999999999999888755411 2689999999999986522 111111111 14467789
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417 154 METSALDSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~~~~~~ 179 (223)
+++||++|.|++++|++|++.+.+..
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999998886553
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=7.5e-31 Score=199.16 Aligned_cols=163 Identities=28% Similarity=0.515 Sum_probs=139.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
....+||+|+|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35679999999999999999999999888777777754 44455666788889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEE
Q 027417 91 LLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQGL-FFMET 156 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 156 (223)
|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..+++..++ +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999996 8998887765 479999999999987643 2778889999999987 49999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 027417 157 SALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~ 175 (223)
||++|.|++++|++|++.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998654
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.9e-31 Score=204.70 Aligned_cols=168 Identities=29% Similarity=0.520 Sum_probs=147.6
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
.......+||+|+|.+|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+..++..+++.+
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34456779999999999999999999887777777778888888888888999999999999999999999999999999
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
|++|+|||++++.+++.+..|+..+..... +.|+++|+||+|+.+... ..+...++...+++++++||++|.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999987654 799999999999975432 22556678888999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 168 FQTVVTEIYNI 178 (223)
Q Consensus 168 ~~~l~~~~~~~ 178 (223)
|++|.+.+.+.
T Consensus 166 ~~~l~~~l~~~ 176 (221)
T 3gj0_A 166 FLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999887544
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=3.6e-29 Score=188.02 Aligned_cols=166 Identities=67% Similarity=1.046 Sum_probs=150.1
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 44677999999999999999999999998888888888988888889999999999999999999988888999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+++|+|+++..+++.+..|+..+........|+++++||+|+.+.+....++++.++...++.++++||+++.|++++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999887665555789999999999987667788899999999999999999999999999999
Q ss_pred HHHHHH
Q 027417 170 TVVTEI 175 (223)
Q Consensus 170 ~l~~~~ 175 (223)
.|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.9e-30 Score=194.32 Aligned_cols=161 Identities=20% Similarity=0.343 Sum_probs=129.1
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
.....++|+|+|++|||||||+++|.+..+...+.++.+.++.. +.. ..+.+.+|||||++.+...+..+++++|+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSA 93 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence 34567999999999999999999999988877777777766543 233 34778899999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCC
Q 027417 90 ALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSN 163 (223)
Q Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 163 (223)
+|+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.... ..++..... ...+++++++||++|.|
T Consensus 94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence 99999999999999999998887654 22479999999999997532 222222211 12345799999999999
Q ss_pred HHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIY 176 (223)
Q Consensus 164 i~~~~~~l~~~~~ 176 (223)
++++|++|++.+.
T Consensus 172 v~~l~~~l~~~~~ 184 (188)
T 1zd9_A 172 IDITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=188.67 Aligned_cols=161 Identities=21% Similarity=0.329 Sum_probs=129.0
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDE-FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
.....++|+|+|++|||||||+++|.+.. +...+.++.+. ....+.+++ +.+.+|||||++.+...+..+++++|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34567999999999999999999999877 45555666653 344444554 68889999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCC
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHSD---MNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALD 160 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 160 (223)
++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ....++...+.. ..+++++++||++
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999999999999988866533 4799999999999975 344556555543 2356899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEIY 176 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~ 176 (223)
|.|++++|++|.+.+.
T Consensus 171 ~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987663
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=8e-30 Score=187.51 Aligned_cols=158 Identities=20% Similarity=0.321 Sum_probs=125.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.++.+. .+.++.+... ..+.++ .+.+.+|||||++.+...+..+++.+|++|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45699999999999999999999988764 3556655443 344444 467889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKA-----LAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++... .+...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999998888775542 24799999999999976422 222222 122346689999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 166 AAFQTVVTEIY 176 (223)
Q Consensus 166 ~~~~~l~~~~~ 176 (223)
++|++|++.+.
T Consensus 158 ~l~~~l~~~i~ 168 (171)
T 1upt_A 158 EAMEWLVETLK 168 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=2.1e-30 Score=189.47 Aligned_cols=156 Identities=21% Similarity=0.397 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 94 (223)
+||+|+|++|||||||+++|.++.+.. +.+|.+.. ...+.. ..+.+.+|||||++.+...+..+++++|++|+|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 45665533 233333 3478889999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCeEEEEccCCCCCHHHHH
Q 027417 95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL-----AEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++.... +...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999999998887553 23468999999999997532 22222221 11234579999999999999999
Q ss_pred HHHHHHHHH
Q 027417 169 QTVVTEIYN 177 (223)
Q Consensus 169 ~~l~~~~~~ 177 (223)
++|++.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999887643
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=5.3e-29 Score=185.91 Aligned_cols=159 Identities=21% Similarity=0.376 Sum_probs=128.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.++. ...+.++.+... ..+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887 566667766443 3444444 67889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999999998887654 23479999999999997642 3333333221 345679999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYN 177 (223)
Q Consensus 166 ~~~~~l~~~~~~ 177 (223)
++|++|.+.+.+
T Consensus 169 ~l~~~l~~~i~~ 180 (186)
T 1ksh_A 169 PGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=5.1e-29 Score=187.00 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=126.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+++|++|||||||+++|.++.+. .+.++.+.+ ...+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988764 455565553 44555666 78899999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCeEEEEcc
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA------------QGLFFMETSA 158 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 158 (223)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+ .+..+++.+.... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999999999887654 234799999999999975 4566666665432 3467999999
Q ss_pred CCCCCHHHHHHHHHH
Q 027417 159 LDSSNVTAAFQTVVT 173 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~ 173 (223)
++|.|++++|++|++
T Consensus 174 ~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQ 188 (190)
T ss_dssp TTTBSHHHHHHHHHT
T ss_pred CcCCCHHHHHHHHHh
Confidence 999999999999875
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.9e-29 Score=190.52 Aligned_cols=156 Identities=20% Similarity=0.256 Sum_probs=122.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+++|++|||||||+++|.++.+. .+.++.+.+. ..+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999987764 4455655543 3455565 78899999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----------------cCCeE
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-----------------QGLFF 153 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 153 (223)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+ .+..+++.+++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999999999887654 234799999999999975 4667777776552 34579
Q ss_pred EEEccCCCCCHHHHHHHHHHH
Q 027417 154 METSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
++|||++|.|++++|++|++.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998753
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.8e-29 Score=187.93 Aligned_cols=159 Identities=22% Similarity=0.369 Sum_probs=124.4
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......++|+|+|++|||||||+++|.+..+ ..+.++.+.... .+.+++ +.+.+|||||++.+...+..+++.+|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3445679999999999999999999998877 444555554443 344454 78889999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCC
Q 027417 89 GALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSS 162 (223)
Q Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 162 (223)
++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 9999999999999999999988876542 347999999999999753 3344444332 2235579999999999
Q ss_pred CHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTE 174 (223)
Q Consensus 163 ~i~~~~~~l~~~ 174 (223)
|++++|++|++.
T Consensus 169 gi~~l~~~l~~~ 180 (181)
T 2h17_A 169 GLCQGLEWMMSR 180 (181)
T ss_dssp THHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998753
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.1e-29 Score=185.88 Aligned_cols=157 Identities=22% Similarity=0.386 Sum_probs=123.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.++.+. .+.++.+.+. ..+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999987765 4556655443 3334454 78889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998886642 247999999999999753 33444444332 345689999999999999
Q ss_pred HHHHHHHHHH
Q 027417 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
++|++|++.+
T Consensus 167 ~l~~~l~~~~ 176 (187)
T 1zj6_A 167 QGLEWMMSRL 176 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998766
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=4.8e-30 Score=192.92 Aligned_cols=158 Identities=18% Similarity=0.365 Sum_probs=119.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.++.+. .+.+|.+. ....+...+ +.+.+|||||++.+...+..+++.+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45699999999999999999999987764 34455553 233344443 78889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL-----AEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++.... +...+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 999999999999999998887543 23469999999999997542 22222221 11234579999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 166 AAFQTVVTEIY 176 (223)
Q Consensus 166 ~~~~~l~~~~~ 176 (223)
++|++|++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999987663
No 94
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=2.9e-28 Score=197.54 Aligned_cols=163 Identities=29% Similarity=0.522 Sum_probs=143.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+++|.+|||||||++++.++.+...+.++++..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4569999999999999999999999888777777765444 455677888999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEc
Q 027417 92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETS 157 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 157 (223)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+... +.+..+++..++...++ +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 78888877654 7999999999998653 56788899999999997 899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 027417 158 ALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~~ 176 (223)
|++|.|++++|+.|++.++
T Consensus 311 a~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999998765
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=5.4e-30 Score=191.32 Aligned_cols=162 Identities=22% Similarity=0.441 Sum_probs=122.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCccceeEeEEEEEEE---CCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD--EFYPNSKSTIGVEFQTQKMDI---NGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
.+||+|+|++|||||||+++|.+. .+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 344456677777766555443 235678999999999999999999999999
Q ss_pred EEEEEEECCCH-hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHcCCe----EEEEccCC
Q 027417 89 GALLVYDISRR-QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT---TAEGKALAEAQGLF----FMETSALD 160 (223)
Q Consensus 89 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 160 (223)
++++|||++++ .+++.+..|+..+..... +.|+++|+||+|+.+.+.+. .+.+..+++..+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 589999999998876543 68999999999997644332 33455666667776 99999999
Q ss_pred CC-CHHHHHHHHHHHHH
Q 027417 161 SS-NVTAAFQTVVTEIY 176 (223)
Q Consensus 161 ~~-~i~~~~~~l~~~~~ 176 (223)
+. +++++++.|.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 161 ESDALAKLRKTIINESL 177 (184)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHh
Confidence 96 99999998887664
No 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=8.8e-29 Score=184.29 Aligned_cols=159 Identities=23% Similarity=0.350 Sum_probs=124.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+++|++|||||||+++|.+..+ ..+.++.|.+ ...+.++ .+.+.+|||||++.+...+..+++.+|++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 5679999999999999999999998754 3345555643 3344445 367889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999999998877543 234789999999999976432 23332221 1234579999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYN 177 (223)
Q Consensus 166 ~~~~~l~~~~~~ 177 (223)
++|++|++.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999877644
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.8e-31 Score=202.34 Aligned_cols=162 Identities=29% Similarity=0.538 Sum_probs=137.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 5679999999999999999999998887766666654433 444556777788999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEEc
Q 027417 92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQGL-FFMETS 157 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 157 (223)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.. .+..+++..+++..++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999986 78888776544 79999999999997542 4566778888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 027417 158 ALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~ 175 (223)
|++|.|++++|++|++.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=3.1e-29 Score=188.99 Aligned_cols=164 Identities=24% Similarity=0.264 Sum_probs=123.3
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEE--EEEEEC-CEEEEEEEEeCCCchhhhchh---
Q 027417 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQT--QKMDIN-GKEVKAQIWDTAGQERFRAVT--- 80 (223)
Q Consensus 7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~D~~G~~~~~~~~--- 80 (223)
+..+....+||+|+|++|||||||++++.+... .. ++.+.+... ....+. +..+.+.+|||+|++.+....
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 445567789999999999999999998887432 22 333333322 222232 566789999999999987776
Q ss_pred HhhhcCCCEEEEEEECCCH--hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------CcccCHHHHHHHHH----
Q 027417 81 SAYYRGAVGALLVYDISRR--QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-------AREVTTAEGKALAE---- 147 (223)
Q Consensus 81 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~---- 147 (223)
..+++++|++|+|||++++ ++++.+..|+..+.... .+.|+++|+||+|+.. .+.+..+++..++.
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 8999999999999999997 67777778887775433 3799999999999865 24455666777887
Q ss_pred HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 148 AQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 148 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..+++|+++||++ .|++++|+.|++.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6788999999999 99999999998764
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=1.5e-29 Score=189.40 Aligned_cols=159 Identities=19% Similarity=0.332 Sum_probs=125.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
+..++|+|+|++|||||||+++|.++.+.. +.++.+... ..+.++ .+.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998876643 455655433 334444 367889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL-----AEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++.... +...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 999999999999999888877554 334799999999999975422 2222221 12335579999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYN 177 (223)
Q Consensus 166 ~~~~~l~~~~~~ 177 (223)
++|++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (189)
T 2x77_A 173 EGMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987743
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=9.3e-29 Score=183.91 Aligned_cols=159 Identities=19% Similarity=0.368 Sum_probs=124.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|++|||||||+++|.++.+ ..+.++.+... ..+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998776 44556656433 3344444 78889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999988886553 457999999999999753 33444443322 124579999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYN 177 (223)
Q Consensus 166 ~~~~~l~~~~~~ 177 (223)
++|++|.+.+.+
T Consensus 169 ~l~~~l~~~~~~ 180 (183)
T 1moz_A 169 EGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1.4e-27 Score=175.11 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=115.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh------chhHhhhc--
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR------AVTSAYYR-- 85 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~-- 85 (223)
.++|+|+|++|||||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998766555455545555555555555 578899999987664 33455554
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
.+|++++|+|+++.+. ...|+..+... +.|+++|+||+|+...+.+.. ++..++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999998543 44577666542 689999999999865444432 4677888889999999999999999
Q ss_pred HHHHHHHHHH
Q 027417 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=7.1e-27 Score=180.13 Aligned_cols=168 Identities=20% Similarity=0.109 Sum_probs=120.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch------hh---hchhHh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE------RF---RAVTSA 82 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~---~~~~~~ 82 (223)
...++|+|+|++|||||||+++|++..+.....+..+.+.........+ +.+.+|||||.. .. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4579999999999999999999998876432222222333333333343 678899999973 21 112334
Q ss_pred hhcCCCEEEEEEECCCHhhHHH--HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcC--CeEEE
Q 027417 83 YYRGAVGALLVYDISRRQTFDS--IGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA---EGKALAEAQG--LFFME 155 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~ 155 (223)
++..+|++|+|+|++++.+++. ...|+..+.... .+.|+++|+||+|+.+.+.+..+ ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5688999999999999887652 345666665442 26899999999999876666554 4566777777 88999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHhhh
Q 027417 156 TSALDSSNVTAAFQTVVTEIYNILSRK 182 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 182 (223)
+||++|.|++++|++|++.+.+.....
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~ 210 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAES 210 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887765543
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=6.8e-28 Score=183.87 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=113.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE-EEEEEEEeCCCchhhhc-hhHhhhcCCC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK-EVKAQIWDTAGQERFRA-VTSAYYRGAV 88 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~-~~~~~~~~~d 88 (223)
....++|+|+|++|||||||+++|+++.+...+.++ +.+... +.+++. .+.+.+|||||++.+.. ++..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 456799999999999999999999998876655433 443333 455543 57899999999999887 7888899999
Q ss_pred EEEEEEECCCHh-hHHHHHH-HHHHHhh--cCCCCCcEEEEEeCCCCCCCcccC--HHHHHH------------------
Q 027417 89 GALLVYDISRRQ-TFDSIGR-WLNELHT--HSDMNVVTILVGNKSDLKDAREVT--TAEGKA------------------ 144 (223)
Q Consensus 89 ~~i~v~d~~~~~-s~~~~~~-~~~~i~~--~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~------------------ 144 (223)
++|+|||+++.. ++..+.. |...+.. ....+.|+++|+||+|+.+..... .+....
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999954 4555544 4444433 234468999999999997643211 011111
Q ss_pred --------------HHH-Hc--CCeEEEEccCCC------CCHHHHHHHHHHH
Q 027417 145 --------------LAE-AQ--GLFFMETSALDS------SNVTAAFQTVVTE 174 (223)
Q Consensus 145 --------------~~~-~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~ 174 (223)
++. .+ +++|++|||++| .|++++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 11 567999999999 9999999999864
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.6e-29 Score=194.35 Aligned_cols=165 Identities=27% Similarity=0.339 Sum_probs=121.6
Q ss_pred ccCCeeeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCccc-eeEeEEE--------------EEEECCE
Q 027417 9 RAEDYLFKVVLIGDS---------AVGKSNLLARFAR---DEFYPNSKSTI-GVEFQTQ--------------KMDINGK 61 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~---------~sGKStli~~l~~---~~~~~~~~~~~-~~~~~~~--------------~~~~~~~ 61 (223)
......+||+|+|.+ |||||||+++|++ ..+...+.+++ +.++... ...+++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 335667999999999 9999999999998 45555555553 2222111 1124567
Q ss_pred EEEEEEEe-----------------------CCCchhhhchhHhhhc---------------------CCCEEEEEEECC
Q 027417 62 EVKAQIWD-----------------------TAGQERFRAVTSAYYR---------------------GAVGALLVYDIS 97 (223)
Q Consensus 62 ~~~~~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~ 97 (223)
.+.+.||| ++|++.+..++..+++ ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 5556666666666666 799999999999
Q ss_pred CH--hhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 98 RR--QTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 98 ~~--~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
++ .+|+.+..|+..+... ...+.|+++|+||+|+.+.+.+ +++..++.. .+++++++||++|.|++++|++|++
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 9999999999988654 3347999999999999764444 567777776 4889999999999999999999987
Q ss_pred HH
Q 027417 174 EI 175 (223)
Q Consensus 174 ~~ 175 (223)
.+
T Consensus 252 ~l 253 (255)
T 3c5h_A 252 LI 253 (255)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=9.4e-27 Score=172.20 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=118.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 90 (223)
.+..++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++. .+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 456799999999999999999999998887766666555555555666664 567999999999999988899999999
Q ss_pred EEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-------C--CeEEEEcc
Q 027417 91 LLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-------G--LFFMETSA 158 (223)
Q Consensus 91 i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa 158 (223)
|+|+|+++ ..+++.+ ..+. ..+.|+++|+||+|+.+. ..++........ + ++++++||
T Consensus 83 i~v~d~~~~~~~~~~~~l----~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI----NHAK---AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEETTCCCCHHHHHHH----HHHG---GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEECCCCCcHHHHHHH----HHHH---hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 99999998 4444332 2222 236899999999999753 223333222222 2 57999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027417 159 LDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~~~~ 177 (223)
++|.|++++|++|++.+..
T Consensus 153 ~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhh
Confidence 9999999999999876643
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=6.9e-27 Score=187.83 Aligned_cols=162 Identities=20% Similarity=0.287 Sum_probs=127.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh-----hchhHhhh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFY---PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-----RAVTSAYY 84 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~~~~~~~~ 84 (223)
..+||+|+|++|||||||+++|+++... ..+.+|.+.... .+.+.+ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999886322 133445444443 344444 578999999999888 67888899
Q ss_pred cCCCEEEEEEECCCHhhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCC--Ccc----cCHHHHHHHHHHcC---CeE
Q 027417 85 RGAVGALLVYDISRRQTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKD--ARE----VTTAEGKALAEAQG---LFF 153 (223)
Q Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 153 (223)
+++|++|+|||++++.+++.+..|...+... ...+.|+++|+||+|+.+ .+. +..+++.+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999999999999997775554332 133699999999999986 343 55678888999987 689
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHH
Q 027417 154 METSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
+++||++ .++.++|..+++.+...
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred EEeeecC-ChHHHHHHHHHHHHcCC
Confidence 9999999 89999999988766443
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.7e-27 Score=193.11 Aligned_cols=157 Identities=19% Similarity=0.370 Sum_probs=117.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..++|+|+|++|||||||+++|.+..+... .+|.+.... .+... .+.+.||||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 457999999999999999999998776433 345444433 33333 4778999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 166 (223)
|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+... .++..... ...+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999999998877776443 334799999999999986432 23322221 12345799999999999999
Q ss_pred HHHHHHHHHH
Q 027417 167 AFQTVVTEIY 176 (223)
Q Consensus 167 ~~~~l~~~~~ 176 (223)
+|++|++.+.
T Consensus 317 l~~~l~~~l~ 326 (329)
T 3o47_A 317 GLDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 108
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=4e-27 Score=175.96 Aligned_cols=158 Identities=20% Similarity=0.251 Sum_probs=118.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC-----------chhhhchhHhh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG-----------QERFRAVTSAY 83 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~ 83 (223)
++|+|+|++|||||||+++|.+..+...+.++.+... ..+.+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999887666555443332 333333 578999999 56677777777
Q ss_pred hcC-CCEEEEEEECCCHhhHHHH-HHHHHH--------H-hhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027417 84 YRG-AVGALLVYDISRRQTFDSI-GRWLNE--------L-HTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF 152 (223)
Q Consensus 84 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------i-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (223)
++. ++++++++++.+..+++.+ ..|... + ......+.|+++|+||+|+...+ .+++..++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 7777777777777788776 566542 1 22223469999999999997644 56777888888874
Q ss_pred -------EEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q 027417 153 -------FMETSALDSSNVTAAFQTVVTEIYNILSR 181 (223)
Q Consensus 153 -------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 181 (223)
++++||++|.|++++|++|++.+.+...+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999888665443
No 109
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=5.4e-27 Score=196.97 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=148.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCc----------hhhhchh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ----------ERFRAVT 80 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 80 (223)
+..++|+|+|.+|||||||+++|++.... ....++++.+.....+..++. .+.||||||+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999987653 233333344444445556664 4779999997 4454444
Q ss_pred H-hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHH----HcCCeEE
Q 027417 81 S-AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALAE----AQGLFFM 154 (223)
Q Consensus 81 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~ 154 (223)
. .+++.+|++|+|+|++++.+++.. .|+..+.. .++|+++|+||+|+.+.+....++.. .+.. ..+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 477889999999999998887775 46666554 36899999999999875554433332 2222 2367899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHhh------hhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417 155 ETSALDSSNVTAAFQTVVTEIYNILSR------KVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 155 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 222 (223)
++||++|.|++++|+.+.+.+.+...+ +..........+.|..++++.+++|.-|-...||.+..+||
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~~n 400 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVN 400 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEES
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEEeEecCCCCCCEEEEEeC
Confidence 999999999999999999877654321 12344455566788889999999999999999999988887
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=7.8e-27 Score=199.14 Aligned_cols=159 Identities=21% Similarity=0.397 Sum_probs=125.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
...++|+|+|.+|||||||+++|++..+. .+.+|.+.+... +.. ..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--EES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE--EEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999998754 445666655443 333 3478899999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 027417 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (223)
+|||++++.+|+.+..|+..+... ...++|+|+|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 999999999999999998887553 23479999999999997532 233322221 1223469999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYN 177 (223)
Q Consensus 166 ~~~~~l~~~~~~ 177 (223)
++|++|.+.+.+
T Consensus 473 ~l~~~l~~~~~~ 484 (497)
T 3lvq_E 473 EGLTWLTSNYKS 484 (497)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999876633
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=2.7e-26 Score=172.32 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=109.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhchh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAVT 80 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~ 80 (223)
....++|+|+|++|||||||+++|++..+.....++.+.+........++ .+.+||||| .+.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 45679999999999999999999998875555555555555444444444 578999999 66777777
Q ss_pred HhhhcCC---CEEEEEEECCCHhhHHHHH--HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--HHHHH-HHHHcCCe
Q 027417 81 SAYYRGA---VGALLVYDISRRQTFDSIG--RWLNELHTHSDMNVVTILVGNKSDLKDAREVTT--AEGKA-LAEAQGLF 152 (223)
Q Consensus 81 ~~~~~~~---d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~ 152 (223)
..+++.+ |++++|+|++++.++.... .|+.. .+.|+++|+||+|+.+.+++.. ++..+ +....+++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 7887766 9999999999987766543 33322 3689999999999986544322 22222 32234678
Q ss_pred EEEEccCCCCCHHHHHHHHHHHH
Q 027417 153 FMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 153 ~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++++||+++.|++++|++|.+.+
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEccCCCCHHHHHHHHHHHh
Confidence 99999999999999999998765
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.5e-26 Score=171.54 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=121.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh------chhHhhhc-
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR------AVTSAYYR- 85 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~- 85 (223)
..++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||+..+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 568999999999999999999998765544455555556666666665 678899999987764 34555554
Q ss_pred -CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417 86 -GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 86 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...+.+. ++...+++..+++++++||+++.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999875 5566677777654 368999999999987544443 3567788888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 165 TAAFQTVVTEIY 176 (223)
Q Consensus 165 ~~~~~~l~~~~~ 176 (223)
+++|++|++.+.
T Consensus 157 ~~l~~~i~~~~~ 168 (188)
T 2wjg_A 157 EELKKAISIAVK 168 (188)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999987663
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=2.5e-27 Score=189.45 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=121.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---hhHhhhcCCCE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYP---NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---VTSAYYRGAVG 89 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~ 89 (223)
||+++|+.|||||||++++.+...+. ...+|.|.++.. ++ ..+.+++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654322 245677766643 22 347899999999999964 46889999999
Q ss_pred EEEEEECCCH--hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHHH----cCCeEEEE
Q 027417 90 ALLVYDISRR--QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-------REVTTAEGKALAEA----QGLFFMET 156 (223)
Q Consensus 90 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 156 (223)
+|+|||++++ +.++.+..|+..+..... +.|+++++||+|+... +++..++++++++. .+++||++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999998 333444444555544433 7999999999999764 34667777888875 67899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHh
Q 027417 157 SALDSSNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~~~~~ 180 (223)
||++ .+|.++|..+++.++.+..
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHH
Confidence 9998 5899999999987765443
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=5.8e-26 Score=165.15 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRG 86 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ 86 (223)
+||+++|++|||||||+++|.+..+. ....++.+.+.....+..++. .+.+|||||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987643 222333344445555556654 678999999876 34456677899
Q ss_pred CCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCC
Q 027417 87 AVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSN 163 (223)
Q Consensus 87 ~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (223)
+|++|+|+|++++.+.. .+..|+.. .+.|+++|+||+|+.+.. +++.+++ ..++ +++++||++|.|
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR------KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH------HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh------cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence 99999999999864432 22233222 268999999999987542 3334444 5677 799999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++++|++|++.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998653
No 115
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=3.3e-26 Score=193.21 Aligned_cols=206 Identities=18% Similarity=0.157 Sum_probs=151.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhch
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAV 79 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 79 (223)
....++|+++|.+|+|||||+++|++... .....++++.+.....+..++. .++|||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 35579999999999999999999997643 2233333344443445555664 678999999 5666665
Q ss_pred hHh-hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCeE
Q 027417 80 TSA-YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-----GLFF 153 (223)
Q Consensus 80 ~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~ 153 (223)
... +++.+|++|+|+|+++..+ +....|...+.. .++|+|+|+||+|+.+.+....++..+.+... ++++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 553 7789999999999998543 222445555544 36899999999999876666667766666554 5789
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHhhh------hhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417 154 METSALDSSNVTAAFQTVVTEIYNILSRK------VMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 222 (223)
+++||++|.|++++|+.+.+.+.+...+. ..........+.|..++++.+++|.-|-...||.+..+||
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~ki~y~~q~~~~pp~~~~~~n 420 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVN 420 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEES
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCCCCCceeeEEEEecCCCCCCEEEEEec
Confidence 99999999999999999998775554321 1333445556777789999999999999999999888776
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=3e-26 Score=169.27 Aligned_cols=153 Identities=21% Similarity=0.215 Sum_probs=112.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch--------hHhh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSAY 83 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~ 83 (223)
..++|+|+|++|||||||+++|.+.... ....++++.++....+.+++. .+.+|||||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3579999999999999999999987543 223344455555666677764 4789999997542211 1235
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
++.+|++|+|+|++++.+++ ...|+..+......++|+++|+||+|+.+... .++...+.+++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999988876 35677777665555799999999999864211 11122467899999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++++|++|.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=2.2e-25 Score=174.74 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=117.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc------hhHhhh-
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA------VTSAYY- 84 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~- 84 (223)
...++|+|+|++|||||||+++|++..+.....+..+.+.....+...+ ..+.+|||||...+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4568999999999999999999998776544444444444444444444 6788999999877654 224454
Q ss_pred -cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417 85 -RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 85 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
..+|++|+|+|+++.++.. .|...+... +.|+++|+||+|+.+.+.+.. ....+++.++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM---EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT---TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc---CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999865533 355555443 699999999999875444432 36778888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++++|++|.+.+
T Consensus 154 i~el~~~i~~~~ 165 (258)
T 3a1s_A 154 LEELKEKIVEYA 165 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=2.6e-25 Score=178.66 Aligned_cols=164 Identities=18% Similarity=0.109 Sum_probs=125.1
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh---------
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--------- 77 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------- 77 (223)
+......-.|+|+|.+|||||||+++|++..+..... +.++........... ....+.||||||+....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHH
Confidence 3456677899999999999999999999987654322 222222223333333 14678899999975433
Q ss_pred -chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEE
Q 027417 78 -AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFM 154 (223)
Q Consensus 78 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~ 154 (223)
.....+++.+|++|+|+|++++.++.....|+..+... +.|+++|+||+|+........+....+...++ .+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 55667788999999999999988888888888877653 68999999999997445556677777888775 6799
Q ss_pred EEccCCCCCHHHHHHHHHHHH
Q 027417 155 ETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 155 ~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++||++|.|++++|+.|...+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYL 180 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHS
T ss_pred EEeCCCCCCHHHHHHHHHHhC
Confidence 999999999999999998765
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=2.4e-26 Score=197.61 Aligned_cols=164 Identities=22% Similarity=0.297 Sum_probs=125.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEE------EEE--CCEEEEEEEEeCCCchhhhchhH
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQK------MDI--NGKEVKAQIWDTAGQERFRAVTS 81 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~D~~G~~~~~~~~~ 81 (223)
.....+||+|+|.+|||||||+++|++..+...+.++.+.++.... +.+ ++..+.+.+||+||++.+..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3566799999999999999999999998887777788777766542 111 23457899999999999999999
Q ss_pred hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
.+++++|++|+|+|+++. +.+..|+..+..... +.|+|+|+||+|+.+.+.+..++++.++...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999865 556778888877654 6899999999999887788888889998899999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVTEIYN 177 (223)
Q Consensus 162 ~~i~~~~~~l~~~~~~ 177 (223)
.|++++++.|++.+.+
T Consensus 193 ~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLH 208 (535)
T ss_dssp --CTTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999887754
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=9.5e-26 Score=177.95 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=116.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh------chhHhhhc-
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR------AVTSAYYR- 85 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~- 85 (223)
..++|+|+|++|||||||+++|++........+ |++.......+.. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 358999999999999999999998764444343 3444444444555 5678899999987765 34555665
Q ss_pred -CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417 86 -GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 86 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
.+|++|+|+|+++.++. ..|...+.. .+.|+++|+||+|+.+.+.+. .....++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999986544 345555544 378999999999986544443 3457788888999999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 165 TAAFQTVVTEI 175 (223)
Q Consensus 165 ~~~~~~l~~~~ 175 (223)
+++|++|.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=6.9e-25 Score=164.33 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=114.5
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhch
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAV 79 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 79 (223)
+....++|+|+|++|||||||+++|++.... ...++.+.+........+. .+.+||||| .+.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 3456789999999999999999999988743 3344445444444433343 466999999 5667777
Q ss_pred hHhhhcCC---CEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--ccCHHHHHHHHHHc-CC
Q 027417 80 TSAYYRGA---VGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR--EVTTAEGKALAEAQ-GL 151 (223)
Q Consensus 80 ~~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~-~~ 151 (223)
+..+++.+ |++++|+|.++..+ ...+..|+... +.|+++|+||+|+.+.. ....++...++... ++
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 77777665 99999999987543 33344454432 68999999999997543 23345556666654 46
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 152 FFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 152 ~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
+++++||++|.|++++|++|.+.+.
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhh
Confidence 8999999999999999999987763
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.2e-25 Score=176.01 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc----------hhHhhh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA----------VTSAYY 84 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~ 84 (223)
.+|+|+|++|||||||+++|++........++.+.+.....+.+.+. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 58999999999999999999998765555566566666666666664 778999999876553 455566
Q ss_pred --cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417 85 --RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 85 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
..+|++|+|+|+++.++...+..|+. ..+.|+++|+||+|+.+.+.+.. ....+++.++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 89999999999999766555444432 23789999999999865433222 2345777889999999999999
Q ss_pred CHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTE 174 (223)
Q Consensus 163 ~i~~~~~~l~~~ 174 (223)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999753
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.6e-24 Score=166.03 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=110.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCc----------hhhhch
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQ----------ERFRAV 79 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~----------~~~~~~ 79 (223)
....++|+|+|.+|||||||+++|++...........+.+.......+. .....+.||||||. +.+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3557999999999999999999999876322222222333333333343 33467889999994 344555
Q ss_pred hHhhhcC---CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHH------
Q 027417 80 TSAYYRG---AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT--TAEGKALAEA------ 148 (223)
Q Consensus 80 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~------ 148 (223)
...+++. +|++|+|+|.+++.+. ....|+..+.. .+.|+++|+||+|+....+.. .++.......
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 5566655 7889999999975432 22344555544 368999999999997643321 1222222222
Q ss_pred -cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417 149 -QGLFFMETSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 149 -~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
.+++++++||++|.|++++|++|.+.+..
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 56779999999999999999999877643
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=2.7e-24 Score=169.90 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=118.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc------hhHhhh--c
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA------VTSAYY--R 85 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~ 85 (223)
.++|+|+|++|||||||+++|++..+.....++.+.+.....+...+. .+.+|||||+..+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999998765555566666666666666664 578999999877655 455555 6
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
++|++|+|+|+++.. ....|...+.... ..|+++|+||+|+.+.+..... ...+++.++++++++||++|.|++
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence 899999999999863 2333444443332 2899999999998653333322 667788889999999999999999
Q ss_pred HHHHHHHHHHH
Q 027417 166 AAFQTVVTEIY 176 (223)
Q Consensus 166 ~~~~~l~~~~~ 176 (223)
++|+.+...+.
T Consensus 155 ~l~~~i~~~~~ 165 (271)
T 3k53_A 155 ELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=1.2e-24 Score=172.18 Aligned_cols=153 Identities=17% Similarity=0.162 Sum_probs=115.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc----------hhHhh
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA----------VTSAY 83 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~ 83 (223)
.++|+|+|++|||||||+++|++........++.+.+.....+...+ ..+.+|||||+..+.. ....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999876544455555555555555554 4567999999876552 22233
Q ss_pred h--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417 84 Y--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 84 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
+ ..+|++|+|+|+++.+....+..|+... +.|+++|+||+|+.+.+.+. .....+++.++++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 7999999999999976655544444432 68999999999986533322 2245677788999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVTEI 175 (223)
Q Consensus 162 ~~i~~~~~~l~~~~ 175 (223)
.|++++|++|.+.+
T Consensus 154 ~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 154 RGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987654
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=4.8e-25 Score=168.49 Aligned_cols=144 Identities=17% Similarity=0.298 Sum_probs=107.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC-
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP---NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG- 86 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~- 86 (223)
....++|+|+|++|||||||+++|.+..+.. .+.++.+..+ ..+.+.+|||||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4567999999999999999999999877643 2333322222 34568899999999998888888877
Q ss_pred ---CCEEEEEEECC-CHhhHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHcCCe
Q 027417 87 ---AVGALLVYDIS-RRQTFDSIGRWLNELHTH----SDMNVVTILVGNKSDLKDAREVT------TAEGKALAEAQGLF 152 (223)
Q Consensus 87 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~ 152 (223)
+|++|+|+|++ ++.+++.+..|+..+... ...+.|+++|+||+|+...+.+. .+++..++...+++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888999998888777543 34579999999999998765543 45567777777888
Q ss_pred EEEEccCCCCC
Q 027417 153 FMETSALDSSN 163 (223)
Q Consensus 153 ~~~~Sa~~~~~ 163 (223)
++++||+++.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998865
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=8e-23 Score=167.44 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=120.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh---------chhHh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR---------AVTSA 82 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~ 82 (223)
...++|+++|++|||||||+++|.+........+..+.......+... ...+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876432222222223333333333 3568899999964321 11223
Q ss_pred hhcCCCEEEEEEECCCHh--hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417 83 YYRGAVGALLVYDISRRQ--TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
....+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+..... .+++..++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999999877 67888889888876554 799999999999976433 2456666777889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~~~ 179 (223)
|+|+++++++|.+.+....
T Consensus 320 g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999998875543
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=3.2e-23 Score=174.90 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=98.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh--------Hhh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT--------SAY 83 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~ 83 (223)
..++|+|+|++|||||||+|+|++.... ....++++.+.....+.+++ +.+.+|||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3588999999999999999999987532 23334434455555566666 568899999987655433 335
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
++.+|++|+|+|++++.+++.+..+...+.... +.|+++|+||+|+...... ....+......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 789999999999999887754333333333222 6899999999999865443 22334443347899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIY 176 (223)
Q Consensus 164 i~~~~~~l~~~~~ 176 (223)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987764
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=2.4e-23 Score=166.50 Aligned_cols=156 Identities=20% Similarity=0.166 Sum_probs=107.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEEEEEEECCEEEEEEEEeCCCchh--------hhchhHh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSA 82 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~ 82 (223)
-...+|+|+|.+|||||||+++|++..+... ..+.++........... ...+.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 3457899999999999999999999877532 22222222222222223 46788999999765 4455667
Q ss_pred hhcCCCEEEEEEECCCHhhHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCeEEEEccCC
Q 027417 83 YYRGAVGALLVYDISRRQTFDSIGRWL-NELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+..... + .+.+..+ ....+++++||++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALD 156 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTC
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCC
Confidence 789999999999999865433 3443 4555443 3689999999999875433 1 1222222 1234699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEI 175 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~ 175 (223)
|.|++++++.|.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999987644
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=3.2e-23 Score=168.17 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhchhHhhhc---CC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTSAYYR---GA 87 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~~~---~~ 87 (223)
.+|+|+|.++||||||+++|++........+.++.......+.+++ ...+.+|||||... +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4689999999999999999998654322222223333333444443 24678999999543 3334455544 59
Q ss_pred CEEEEEEECCC---HhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccCC
Q 027417 88 VGALLVYDISR---RQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSALD 160 (223)
Q Consensus 88 d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 160 (223)
|++|+|+|+++ +.+++.+..|+.++..+.. ..+|+++|+||+|+.... +....+.+.+. .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7889999999999887642 479999999999987532 34566667766 6799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEI 175 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~ 175 (223)
+.|+++++++|.+.+
T Consensus 314 g~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 314 REGLRELLFEVANQL 328 (342)
T ss_dssp SSTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998766
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.88 E-value=1.2e-23 Score=174.85 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=113.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-------hH
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-------TS 81 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~ 81 (223)
+....++|+|+|++|+|||||+++|++..+.. ...+.++.+.....+.+.+.. .+.+|||||+..+..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 34567999999999999999999999877632 223333444445555555432 7889999998776544 35
Q ss_pred hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
.++..+|++|+|+|++.. +....|+..+... +.|+++|+||+|+...+.. +....+++.++++++++||++|
T Consensus 109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 578899999999999433 3335666666554 6899999999999875543 6666777778899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVTEI 175 (223)
Q Consensus 162 ~~i~~~~~~l~~~~ 175 (223)
.|++++|++|.+.+
T Consensus 181 ~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 181 KGFDDIGKTISEIL 194 (423)
T ss_dssp TSTTTHHHHHHHHS
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998766
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=3.9e-22 Score=167.55 Aligned_cols=200 Identities=20% Similarity=0.105 Sum_probs=129.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-----------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV----------- 79 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------- 79 (223)
+..++|+|+|++|||||||+++|++.... ....++++.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35699999999999999999999987542 222233333344455666775 5679999997433221
Q ss_pred -hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHH----HcCCeE
Q 027417 80 -TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALAE----AQGLFF 153 (223)
Q Consensus 80 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~ 153 (223)
...+++.+|++++++|++++.+.+.. .+...+.. .++|+++|+||+|+.+.+....++.. .+.. ..++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 12356789999999999986655442 22222322 36899999999999865544444332 2222 335789
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417 154 METSALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 222 (223)
+++||++|.|++++|+.+.+.+.+.. .+. ....... .++.+ ++.++.|..|....||.+-.+||
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~~-~~i~t~~ln~~l~~~~~--~~~~~--~~~ki~y~~q~~~~p~~~~~~~n 402 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASYT-TKVPSSAINSALQKVLA--FTNLP--RGLKIFFGVQVDIKPPTFLFFVN 402 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHT--TCCCS--TTCCEEEEEEEETTTTEEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHH--cCCCC--CCcEEEEEEecCCCCCEEEEEEc
Confidence 99999999999999999987654432 211 1111111 22222 88888898888888888777776
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=3.3e-22 Score=168.88 Aligned_cols=153 Identities=22% Similarity=0.230 Sum_probs=113.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCch-hhhc--------hhHhh
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE-RFRA--------VTSAY 83 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~~~~--------~~~~~ 83 (223)
.++|+|+|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999987543 33344445555556666666 467899999987 4432 23456
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
++.+|++|+|+|++++.+++...- ++.+ .++|+++|+||+|+.+. ...++...++. .+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKI-LERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHH-HHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHHH-HHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 789999999999999877765432 2333 26899999999999753 34455544432 346899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIYN 177 (223)
Q Consensus 164 i~~~~~~l~~~~~~ 177 (223)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=5.1e-22 Score=161.66 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=99.0
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----------HhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----------RQTFDSIGRWLNELHTH-SDMNVVTILVGNKSD 130 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D 130 (223)
.+.+.+|||+|++.++..|.+++++++++|+|+|+++ ..+++....|+..+... ...+.|+||++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4788999999999999999999999999999999999 46788888888887654 334799999999999
Q ss_pred CCCCc---------------ccCHHHHHHHHH-----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417 131 LKDAR---------------EVTTAEGKALAE-----------AQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 131 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
+.+.+ .++.+++..++. ..++.+++|||+++.||+++|++++..+.+.
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 85322 356788888876 3567899999999999999999999887654
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=1.4e-21 Score=164.23 Aligned_cols=151 Identities=25% Similarity=0.297 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh---------hhchhHhhh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---------FRAVTSAYY 84 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~ 84 (223)
.+|+|+|.||||||||+|+|++..... ...+.++.+.....+.+.+. .+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 479999999999999999999876432 22333333444555566664 567999999653 344566788
Q ss_pred cCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH-HHHHHHcCC-eEEEEccCC
Q 027417 85 RGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG-KALAEAQGL-FFMETSALD 160 (223)
Q Consensus 85 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 160 (223)
+.+|++|+|+|++++.+.. .+..|+.. .++|+++|+||+|+.+. . ..++ .++. .+++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 9999999999998865433 23444432 26899999999998532 1 1223 3443 4566 689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~ 177 (223)
|.|+.+++++|...+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999887753
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=5e-21 Score=159.17 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=114.8
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEE-------------------E---ECCEEEEEEE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM-------------------D---INGKEVKAQI 67 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~~~~l 67 (223)
.....++|+++|++++|||||+++|++....... +........ . .......+.+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc----CccccceeeccccccccceecccccccccccccccccceEEE
Confidence 3456799999999999999999999985432211 111000000 0 0113368899
Q ss_pred EeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHH
Q 027417 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKAL 145 (223)
Q Consensus 68 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~ 145 (223)
|||||++.+...+...+..+|++|+|+|++++.++.....|+..+.... ..|+++|+||+|+.+..+. ..++..++
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876777777776665443 2589999999999764321 12223333
Q ss_pred HHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 146 AEAQ---GLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 146 ~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
.... +++++++||++|.|++++++.|...+
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 3222 56899999999999999999987644
No 137
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=151.27 Aligned_cols=162 Identities=13% Similarity=0.172 Sum_probs=105.1
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc--cceeEeEEEEEEECCEEEEEEEEeCCCc-----------hhh
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKS--TIGVEFQTQKMDINGKEVKAQIWDTAGQ-----------ERF 76 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~-----------~~~ 76 (223)
+....++|+|+|++|||||||+++|++..+.....+ +.+.........+.+ ..+.+|||||. ..+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345679999999999999999999999877655544 333344444555555 46779999993 234
Q ss_pred hchhHhhhcCCCEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHH
Q 027417 77 RAVTSAYYRGAVGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT------TAEGKALAEA 148 (223)
Q Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~ 148 (223)
...+...++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.+...+. .+..+.+.+.
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 4445555678999999999976433 22333333333221 136999999999987654333 2457778888
Q ss_pred cCCeEEEEccCCC-----CCHHHHHHHHHHHH
Q 027417 149 QGLFFMETSALDS-----SNVTAAFQTVVTEI 175 (223)
Q Consensus 149 ~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~ 175 (223)
++..++.++...+ .++.++|+.+...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 8888888776644 57788887776544
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.87 E-value=2.2e-21 Score=164.46 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=110.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC----C---CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDE----F---YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYY 84 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~ 84 (223)
...++|+++|++++|||||+++|++.. . .....+.++.+.....+.+++ ..+.+|||||++.+...+...+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999999999865 1 122222222222223334444 6788999999999998899999
Q ss_pred cCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHc----CCeEEE
Q 027417 85 RGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQ----GLFFME 155 (223)
Q Consensus 85 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~ 155 (223)
..+|++|+|+|+++ +.+++.+. .+.. .+.|+++++||+|+.+... ...++..+++... ++++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999998 55554433 2222 2578899999999975321 1234455555555 578999
Q ss_pred EccCCCCCHHHHHHHHHHHHH
Q 027417 156 TSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
+||++|.|+++++++|...+.
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999987653
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=2.4e-21 Score=167.27 Aligned_cols=157 Identities=20% Similarity=0.273 Sum_probs=111.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----C------CccceeEeEEEEEEE-----CCEEEEEEEEeCCCch
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDE--FYPN-----S------KSTIGVEFQTQKMDI-----NGKEVKAQIWDTAGQE 74 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~--~~~~-----~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~ 74 (223)
...+|+|+|+.++|||||+++|+... +... . ....|.+.......+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46899999999999999999998621 1100 0 011233332222222 4567899999999999
Q ss_pred hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe--
Q 027417 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-- 152 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 152 (223)
.+...+...++.+|++|+|+|+++..+.+....|...... +.|+++|+||+|+...+ ..+...++...+++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----DLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----TCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999998777777777766542 68999999999998643 233345566666764
Q ss_pred -EEEEccCCCCCHHHHHHHHHHHH
Q 027417 153 -FMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 153 -~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++++||++|.|+++++++|.+.+
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHS
T ss_pred eEEEeecccCCCchhHHHHHhhcC
Confidence 89999999999999999988654
No 140
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=7.1e-21 Score=155.78 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=107.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc---------hhhhchhHhhhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ---------ERFRAVTSAYYRG 86 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~~~~ 86 (223)
.|+|+|++|||||||+++|++........+..+.+.....+.+++ ..+.+|||+|. +.+...+. .+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHh
Confidence 499999999999999999998765433333334445556677777 45789999995 22333333 4688
Q ss_pred CCEEEEEEECCCHh--hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHc---CCeEEEEccCC
Q 027417 87 AVGALLVYDISRRQ--TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQ---GLFFMETSALD 160 (223)
Q Consensus 87 ~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~Sa~~ 160 (223)
+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+.+... ...+.+..++... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 566666666666554444789999999999875421 0112333344444 34689999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027417 161 SSNVTAAFQTVVTEIY 176 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~ 176 (223)
+.|++++++.|.+.+.
T Consensus 338 g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 338 RTNLELLRDKIYQLAT 353 (364)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhc
Confidence 9999999999987653
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=1.4e-20 Score=156.73 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=104.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCc--cceeEeEEEEEEE-------------C--C----EEEEEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEF---YPNSKS--TIGVEFQTQKMDI-------------N--G----KEVKAQI 67 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l 67 (223)
...++|+++|++++|||||+++|++... .....+ |....+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4569999999999999999999986432 222222 3333333322211 1 1 1378999
Q ss_pred EeCCCchhhhchhHhhhcCCCEEEEEEECCC----HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHH
Q 027417 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISR----RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAE 141 (223)
Q Consensus 68 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~ 141 (223)
|||||++.|...+...+..+|++|+|+|+++ +++++.+..| .... ..|+++++||+|+.+... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EILG--IDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHTT--CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHcC--CCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999998888888888999999999995 4555554433 2111 257999999999976443 23456
Q ss_pred HHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 142 GKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 142 ~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+.+++.. .+++++++||++|.|+++++++|...+
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 6666654 367899999999999999999987543
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=1.7e-21 Score=156.45 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=96.8
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC----------CHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS----------RRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSD 130 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D 130 (223)
.+.+++|||+|+++++..|.+++++++++|+|+|++ +..+++....|+..+... ...+.|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 378899999999999999999999999999999665 567788887888777543 334799999999999
Q ss_pred CCCCc----------------ccCHHHHHHHH----------HHcCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417 131 LKDAR----------------EVTTAEGKALA----------EAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 131 l~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
+.+.+ ..+.+++..+. ...++.++++||+++.||+.+|+.+...+++.
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 86433 46778888774 34567789999999999999999999888654
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=8.2e-21 Score=163.66 Aligned_cols=158 Identities=23% Similarity=0.278 Sum_probs=114.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----CC------ccceeEeE----EEEEEE-CCEEEEEEEEeCCCc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD--EFYPN-----SK------STIGVEFQ----TQKMDI-NGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~-----~~------~~~~~~~~----~~~~~~-~~~~~~~~l~D~~G~ 73 (223)
+...+|+|+|+.++|||||+++|++. .+... .. ...|.+.. ...+.. ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45789999999999999999999762 11110 00 00122211 111211 455689999999999
Q ss_pred hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-
Q 027417 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF- 152 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 152 (223)
..|...+...++.+|++|+|+|+++..+.+....|..... .+.|+++++||+|+...+ ..+...++...+++.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999889999999999999999999888888877866553 268999999999997643 223345566666763
Q ss_pred --EEEEccCCCCCHHHHHHHHHHHH
Q 027417 153 --FMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 153 --~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++++||++|.|++++|++|++.+
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred ccEEEEEeecCCCchHHHHHHHHhc
Confidence 89999999999999999988655
No 144
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=2.8e-21 Score=151.61 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=106.2
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcc-ceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---------
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKST-IGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------- 78 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------- 78 (223)
+....++|+|+|++|||||||+++|++..... ...++ ++.+.........+ ..+.||||||+..+..
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34567999999999999999999999876433 33332 23333444444454 5678999999755422
Q ss_pred --hhHhhhcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEe-CCCCCCCcccCH-------HHHHHHHH
Q 027417 79 --VTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGN-KSDLKDAREVTT-------AEGKALAE 147 (223)
Q Consensus 79 --~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~ 147 (223)
.....++.+|++|+|+|+++... ...+..|+..+.... ...|+++++| |+|+... .+.. .+.+.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 22336789999999999986222 222334444432211 1356666665 9999743 2222 33445666
Q ss_pred HcCCe---E--EEEccCCCCCHHHHHHHHHHHHHH
Q 027417 148 AQGLF---F--METSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 148 ~~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
.++.. + +++||+++.|++++|+.|...+..
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 66643 2 789999999999999999887654
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=2.2e-22 Score=168.97 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=99.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch--------hhhchhHhhhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE--------RFRAVTSAYYR 85 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~ 85 (223)
.++|+|+|.+|||||||+++|++..... ...+.|++.......+......+.+|||||++ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 3689999999999999999999876542 23344665555555555445678899999975 56667778889
Q ss_pred CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCH
Q 027417 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNV 164 (223)
Q Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 164 (223)
.+|++|+|+|+.++.+... .|+..+.. ..++|+++|+||+|+..... +..++. ..++ .++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence 9999999999998766443 33333222 23689999999999875321 111222 3455 6899999999999
Q ss_pred HHHHHHHHHHH
Q 027417 165 TAAFQTVVTEI 175 (223)
Q Consensus 165 ~~~~~~l~~~~ 175 (223)
.++++++.+.+
T Consensus 153 ~~L~~~i~~~l 163 (436)
T 2hjg_A 153 GDLLDAVAEHF 163 (436)
T ss_dssp HHHHHHHHHTG
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=5.1e-22 Score=167.04 Aligned_cols=152 Identities=20% Similarity=0.196 Sum_probs=102.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhH--------hh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS--------AY 83 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~--------~~ 83 (223)
..++|+|+|++|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||...+..... .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4589999999999999999999986543 22234434444444555666 4568999999766543332 25
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
+..+|++|+|+|++++.+... ..|+..+. ..|+++|+||+|+....... ....+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 688999999999999766554 45555553 36999999999998654432 111111 356799999999999
Q ss_pred HHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIY 176 (223)
Q Consensus 164 i~~~~~~l~~~~~ 176 (223)
+++++++|.+.+.
T Consensus 371 i~eL~~~i~~~~~ 383 (462)
T 3geh_A 371 IDSLETAILEIVQ 383 (462)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987663
No 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=3.5e-21 Score=150.04 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=104.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeE--eEEEEEEECCEEEEEEEEeCCCc--------hhhhchh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVE--FQTQKMDINGKEVKAQIWDTAGQ--------ERFRAVT 80 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~ 80 (223)
....++|+|+|.+|||||||+++|++.........+.+++ .........+ ..+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3567999999999999999999999987765444332333 2333344444 56789999995 2232223
Q ss_pred Hhhh----cCCCEEEEEEECCCHhhH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc------cCHHHHHHHHHHc
Q 027417 81 SAYY----RGAVGALLVYDISRRQTF-DSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE------VTTAEGKALAEAQ 149 (223)
Q Consensus 81 ~~~~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~ 149 (223)
...+ +.+|++|+|+|+++.... ..+..|+..+......+.|+|+++||.|+..... ...+..+.+.+.+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 3333 899999999999863221 2223444443322223689999999999975321 1113467778888
Q ss_pred CCeEEEEccCC-----CCCHHHHHHHHHHHHHH
Q 027417 150 GLFFMETSALD-----SSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 150 ~~~~~~~Sa~~-----~~~i~~~~~~l~~~~~~ 177 (223)
+..++.+++.. +.|+.++++.|.+.+.+
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 88877766554 57899999888766654
No 148
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=1.2e-21 Score=156.82 Aligned_cols=155 Identities=18% Similarity=0.119 Sum_probs=105.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEEEEEEECCEEEEEEEEeCCCch-h--------hhchhHh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE-R--------FRAVTSA 82 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~--------~~~~~~~ 82 (223)
...+|+|+|++|||||||+++|++..+... ..+.++.......+... ...+.+|||||+. . +......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 446899999999999999999998765422 12211222222222223 3578899999986 2 2333455
Q ss_pred hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027417 83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDS 161 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (223)
+++.+|++++|+|.++ +.....|+..... ..+.|+++++||+|+........+....+...++. .++++||+++
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 6788999999999977 3333334333222 23689999999999875222233445556566676 6999999999
Q ss_pred CCHHHHHHHHHHH
Q 027417 162 SNVTAAFQTVVTE 174 (223)
Q Consensus 162 ~~i~~~~~~l~~~ 174 (223)
.|++++++.|...
T Consensus 160 ~~v~~l~~~i~~~ 172 (301)
T 1ega_A 160 LNVDTIAAIVRKH 172 (301)
T ss_dssp TTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998854
No 149
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=2.4e-21 Score=157.66 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=94.2
Q ss_pred EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC----------CHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCC
Q 027417 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS----------RRQTFDSIGRWLNELHTH-SDMNVVTILVGNKS 129 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~ 129 (223)
..+.+++|||+|++.++..|.+++++++++|+|||++ +..+++....|+..+... ...+.|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 788999999999888654 23479999999999
Q ss_pred CCCCCcc--c-------------------CHHHHHHHHHH----------------cCCeEEEEccCCCCCHHHHHHHHH
Q 027417 130 DLKDARE--V-------------------TTAEGKALAEA----------------QGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 130 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|+.+.+. + +.+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853211 1 24666666432 123478999999999999999999
Q ss_pred HHHHHHH
Q 027417 173 TEIYNIL 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
+.+.+..
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=5.8e-21 Score=160.20 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=106.6
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCccceeEeEEEEE
Q 027417 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFY-------------------------------PNSKSTIGVEFQTQKM 56 (223)
Q Consensus 8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 56 (223)
.......++|+++|++++|||||+++|++.... ....+ |.+......
T Consensus 11 ~~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~--GiTid~~~~ 88 (439)
T 3j2k_7 11 GAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK--GKTVEVGRA 88 (439)
T ss_pred CCCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhc--CceEEEeEE
Confidence 344567799999999999999999999653211 01111 334444444
Q ss_pred EECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhh---HHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCC
Q 027417 57 DINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQT---FDSIGRWLNELHTHSDMNVV-TILVGNKSDLK 132 (223)
Q Consensus 57 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~ 132 (223)
.+......+.||||||++.|...+...+..+|++|+|+|+++... |+....+...+......+.| +|+++||+|+.
T Consensus 89 ~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 89 YFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred EEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 444445688999999999999999999999999999999998532 21111111121111122466 89999999986
Q ss_pred CCc------ccCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHHH
Q 027417 133 DAR------EVTTAEGKALAEAQG------LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 133 ~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 169 (223)
... +...++...++...+ ++++++||++|.|+.++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 421 111233444554444 5799999999999999766
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=1.1e-21 Score=155.06 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=93.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------CccceeEeEEEEEEECCEEEEEEEEeCCCch-------hh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS--------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQE-------RF 76 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~~ 76 (223)
...++|+|+|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 34699999999999999999998876554332 3444555555544445555789999999962 22
Q ss_pred hchh-------Hhhhc-------------CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 77 RAVT-------SAYYR-------------GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 77 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
..+. ..++. .+|+++++++.+.....+.-..++..+.. ++|+|+|+||+|+....+
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 2222 22332 37899999987763222222344555543 699999999999875332
Q ss_pred cC--HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417 137 VT--TAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
.. .+...+.....+++++++|++++.|+.+++++|.+.
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 21 233455566778999999999999999999887653
No 152
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=1.3e-20 Score=156.97 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=111.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCc--cceeEeEEEEEEE-------------C--C----EEEEE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEF---YPNSKS--TIGVEFQTQKMDI-------------N--G----KEVKA 65 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 65 (223)
.....++|+++|++++|||||+++|++... .....+ |....+....+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 456779999999999999999999986432 122222 3333333322211 1 1 13689
Q ss_pred EEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCH
Q 027417 66 QIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTT 139 (223)
Q Consensus 66 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~ 139 (223)
.||||||++.|.......+..+|++|+|+|+++ +.+++.+..|. ... ..|+++++||+|+.+... ...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~~~--~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ----IIG--QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH----HHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH----HcC--CCcEEEEEECccCCCHHHHHHHH
Confidence 999999999998888888889999999999995 44555544332 111 257899999999986432 223
Q ss_pred HHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 140 AEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 140 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+++.+++.. .+++++++||++|.|+++++++|...+
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 445555543 367899999999999999999987543
No 153
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.85 E-value=6.2e-21 Score=155.75 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=91.1
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----------HhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----------RQTFDSIGRWLNELHTH-SDMNVVTILVGNKSD 130 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D 130 (223)
.+.+.+|||+|++.++..|.+++++++++|+|+|+++ ..+++....|+..+... ...+.|+||++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 3788999999999999999999999999999999999 67899998888887654 334799999999999
Q ss_pred CCCCc----------------ccCHHHHHHHHH-----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417 131 LKDAR----------------EVTTAEGKALAE-----------AQGLFFMETSALDSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 131 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 179 (223)
+.+.+ .++.+++..++. ..++.+++|||+++.||+++|+++...+++..
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 86322 256778777652 34577999999999999999999998886544
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=2.6e-21 Score=164.35 Aligned_cols=154 Identities=19% Similarity=0.113 Sum_probs=100.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------------CCccceeEeEEEEEEECCEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN-----------------------------SKSTIGVEFQTQKMDINGKE 62 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 62 (223)
...+||+++|++++|||||+++|++...... .....|.+.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4579999999999999999999976411000 00011333333333344445
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHH------HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDS------IGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
+.+.||||||++.+...+..++..+|++|+|+|++++.++.. ....+..+... . ..|+|+|+||+|+.+.++
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEECcCcccchH
Confidence 678999999999999999999999999999999999754322 11122222222 1 256999999999986433
Q ss_pred cCHHHHH----HHHHHc-----CCeEEEEccCCCCCHHHH
Q 027417 137 VTTAEGK----ALAEAQ-----GLFFMETSALDSSNVTAA 167 (223)
Q Consensus 137 ~~~~~~~----~~~~~~-----~~~~~~~Sa~~~~~i~~~ 167 (223)
...++.. .+.... +++++++||++|.|+.++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 3333333 333333 457999999999999864
No 155
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=4.3e-22 Score=163.07 Aligned_cols=164 Identities=19% Similarity=0.330 Sum_probs=92.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCC--------ccceeEeEEEEEEECCEEEEEEEEeCCCc-------hh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSK--------STIGVEFQTQKMDINGKEVKAQIWDTAGQ-------ER 75 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~~ 75 (223)
...++|+|+|++|+|||||+++|++..... .+. ++.+.......+...+..+.+++|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987654332 211 33333333333444566778999999998 56
Q ss_pred hhchhH-------hhhcCCCE-----------EEEEEECCC-HhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 76 FRAVTS-------AYYRGAVG-----------ALLVYDISR-RQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 76 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
+..+.. .+++.+++ .+++|++++ ..++..+. .|+..+ ..+.|+|+|+||+|+...+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 666665 55543322 234555444 34454443 444443 2478999999999998655
Q ss_pred ccCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417 136 EVTT--AEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 136 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 180 (223)
++.. +++..++...+++++++||+++.+ ++.|..+.+.+.+..+
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 5443 566777777899999999999999 8889888887765443
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.2e-21 Score=143.73 Aligned_cols=117 Identities=19% Similarity=0.335 Sum_probs=88.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC-
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP---NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG- 86 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~- 86 (223)
....++|+|+|++|||||||+++|.+..+.. ...++.+. ....+.+.+|||||+..+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3567999999999999999999999876543 11222111 1134567899999998888777777765
Q ss_pred ---CCEEEEEEECC-CHhhHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCCcc
Q 027417 87 ---AVGALLVYDIS-RRQTFDSIGRWLNELHTH----SDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 87 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
+|++|+|+|++ +..++..+..|+..+... ...+.|+++|+||+|+.+...
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999998888776543 334799999999999986543
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=1.2e-21 Score=164.39 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=106.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCC----------------------C-----ccceeEeEEEEEEECCEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD--EFYPNS----------------------K-----STIGVEFQTQKMDINGKE 62 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~~----------------------~-----~~~~~~~~~~~~~~~~~~ 62 (223)
...++|+++|++++|||||+++|++. .+.... + ...|.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45699999999999999999999864 221100 0 001222222223333344
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhc----CCCC-CcEEEEEeCCCCCCCc--
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH----SDMN-VVTILVGNKSDLKDAR-- 135 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~-~p~ivv~nK~Dl~~~~-- 135 (223)
+.+.||||||++.|...+..++..+|++|+|+|+++ .+|+.+..|......+ ...+ .|+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 678899999999999999999999999999999999 6777654433222211 1113 4689999999997621
Q ss_pred ----ccCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027417 136 ----EVTTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 136 ----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 169 (223)
+...++.+.++...+ ++++++||++|.|+.++++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 122355666777665 6799999999999986654
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.83 E-value=1e-22 Score=173.37 Aligned_cols=158 Identities=19% Similarity=0.172 Sum_probs=111.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 92 (223)
..++|+|+|++++|||||+++|.+..+.....++++.++....+..+ ....++||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46889999999999999999999876654444444443333333231 22367899999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHH---HHHc--CCeEEEEccCCCCCHHH
Q 027417 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKAL---AEAQ--GLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~ 166 (223)
|+|+++....+....| ..+. ..+.|+++++||+|+...+.. ...+...+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999986554444333 2222 236899999999998753221 11111111 1111 34799999999999999
Q ss_pred HHHHHHHHH
Q 027417 167 AFQTVVTEI 175 (223)
Q Consensus 167 ~~~~l~~~~ 175 (223)
+|+.|...+
T Consensus 158 Lle~I~~l~ 166 (537)
T 3izy_P 158 LAEATIALA 166 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998654
No 159
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.83 E-value=8.8e-20 Score=150.17 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=96.6
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----------HhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCC
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----------RQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDL 131 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl 131 (223)
+.+++|||+|++.++..|..++++++++|+|||+++ ..+|+.+..|+..+... ...+.|++||+||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 788999999999999999999999999999999999 88999999999998765 3457999999999998
Q ss_pred CCCcc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEEccCCCCCHHHHH
Q 027417 132 KDARE---V---------------------------TTAEGKALA-----EA--------QGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 132 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~~~ 168 (223)
.+.+. + ..+++..++ .. ..+.+++|||+++.||+++|
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 54221 1 135566553 22 24668899999999999999
Q ss_pred HHHHHHHHHHHh
Q 027417 169 QTVVTEIYNILS 180 (223)
Q Consensus 169 ~~l~~~~~~~~~ 180 (223)
+++...+.+...
T Consensus 377 ~~v~~~I~~~~l 388 (402)
T 1azs_C 377 NDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887765543
No 160
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=1.8e-20 Score=151.05 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=95.0
Q ss_pred EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC----------CHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCC
Q 027417 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS----------RRQTFDSIGRWLNELHTH-SDMNVVTILVGNKS 129 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~ 129 (223)
..+.+++||++|+++++..|.+++++++++|+|+|++ +..++.....|+..+... ...+.|++|++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 3478899999999999999999999999999999998 678888888888877544 33579999999999
Q ss_pred CCCCCc---------------ccCHHHHHHHHH-Hc--------------------------CCeEEEEccCCCCCHHHH
Q 027417 130 DLKDAR---------------EVTTAEGKALAE-AQ--------------------------GLFFMETSALDSSNVTAA 167 (223)
Q Consensus 130 Dl~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~i~~~ 167 (223)
|+.+.+ ....+++.++.. .. .+.++++||++..||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 975311 124566655443 22 367899999999999999
Q ss_pred HHHHHHHHHH
Q 027417 168 FQTVVTEIYN 177 (223)
Q Consensus 168 ~~~l~~~~~~ 177 (223)
|+.+...+++
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998877
No 161
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=1.4e-20 Score=154.40 Aligned_cols=147 Identities=12% Similarity=0.084 Sum_probs=106.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 95 (223)
+|+++|++++|||||+++|+.. +.+.......+......+.+|||||++.|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 9999999999999999999811 222222222333344568899999999998888888899999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcCCCCCcE-EEEEe-CCCCCCCcccCH--HHHHHHHHHc---CCeEEE--EccCC---CCC
Q 027417 96 ISRRQTFDSIGRWLNELHTHSDMNVVT-ILVGN-KSDLKDAREVTT--AEGKALAEAQ---GLFFME--TSALD---SSN 163 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~ 163 (223)
+. ..+.....|+..+... +.|. ++++| |+|+ +...+.. ++.++++... .+++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 43 3344455555555433 4666 88899 9999 5322221 4455555544 368999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 027417 164 VTAAFQTVVTEIYNI 178 (223)
Q Consensus 164 i~~~~~~l~~~~~~~ 178 (223)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998776443
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.83 E-value=1.4e-20 Score=156.06 Aligned_cols=158 Identities=17% Similarity=0.108 Sum_probs=108.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC------CCC--------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFY------PNS--------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA 78 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 78 (223)
..++|+++|++++|||||+++|++.... ... ....|.+.......+......+.||||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4589999999999999999999873110 000 01123344333444444446788999999999988
Q ss_pred hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHHHHHcC----
Q 027417 79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDARE---VTTAEGKALAEAQG---- 150 (223)
Q Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~---- 150 (223)
.+...+..+|++|+|+|+++....+....| ..+.. .+.| +++++||+|+....+ ...++.++++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888899999999999999985443333333 33332 2577 689999999874221 12345666777666
Q ss_pred -CeEEEEccCCCCC----------HHHHHHHHHHH
Q 027417 151 -LFFMETSALDSSN----------VTAAFQTVVTE 174 (223)
Q Consensus 151 -~~~~~~Sa~~~~~----------i~~~~~~l~~~ 174 (223)
++++++||++|.| +.++++.|...
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 5899999999764 77777776543
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=4.8e-21 Score=161.68 Aligned_cols=154 Identities=17% Similarity=0.120 Sum_probs=101.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC--------chhhhchhHhh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG--------QERFRAVTSAY 83 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G--------~~~~~~~~~~~ 83 (223)
....+|+|+|.+|||||||+++|++..+.. ...+.|++.......+......+.+||||| ++.+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 446899999999999999999999876542 233446666666666666667889999999 66777788888
Q ss_pred hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (223)
++.+|++|+|+|..+..+ ....|+..+... .++|+++|+||+|+.+.. ....++. ..+. .++++||++|.
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGL 170 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCT
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccccc
Confidence 999999999999877433 223333333222 479999999999986432 1111121 2333 36799999999
Q ss_pred CHHHHHHHHHHHH
Q 027417 163 NVTAAFQTVVTEI 175 (223)
Q Consensus 163 ~i~~~~~~l~~~~ 175 (223)
|+.++++.+...+
T Consensus 171 gv~~L~~~i~~~l 183 (456)
T 4dcu_A 171 GLGDLLDAVAEHF 183 (456)
T ss_dssp THHHHHHHHHTTG
T ss_pred chHHHHHHHHhhc
Confidence 9999999987644
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.82 E-value=7.7e-21 Score=158.16 Aligned_cols=151 Identities=18% Similarity=0.126 Sum_probs=104.2
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--CC-----ccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARD--------EFYPN--SK-----STIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~--------~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
......++|+++|++++|||||+++|++. .+... .+ ...|.+.......+......+.||||||+
T Consensus 6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 34556799999999999999999999873 11100 00 12233333334444444467889999999
Q ss_pred hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHHHHHc
Q 027417 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDARE---VTTAEGKALAEAQ 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~ 149 (223)
+.|...+...+..+|++|+|+|+++.... ....|+..+... +.| +++++||+|+....+ ...++...++...
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 99988888899999999999999986543 334455554432 577 889999999974221 1123556666666
Q ss_pred C-----CeEEEEccCCCCC
Q 027417 150 G-----LFFMETSALDSSN 163 (223)
Q Consensus 150 ~-----~~~~~~Sa~~~~~ 163 (223)
+ ++++++||++|.|
T Consensus 162 ~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp TSCTTTSCEEECCHHHHHH
T ss_pred cccccCCCEEEccHHHhhh
Confidence 5 6799999999987
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=6.5e-20 Score=158.39 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=106.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CccceeEeEEEEE------------EECCEEEEEEEEeCCCchhh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNS----KSTIGVEFQTQKM------------DINGKEVKAQIWDTAGQERF 76 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~l~D~~G~~~~ 76 (223)
..++|+|+|++++|||||+++|++..+.... .++.+..+..... .++.....++||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4579999999999999999999876543221 1222322221100 00001125889999999999
Q ss_pred hchhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------------HH-
Q 027417 77 RAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT------------TA- 140 (223)
Q Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~- 140 (223)
...+...++.+|++|+|+|+++ +.+++.+..+ .. .+.|+++++||+|+....... .+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999888999999999999999 6776655432 22 268999999999986421100 00
Q ss_pred ----------HHHHHHHHc---------------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 141 ----------EGKALAEAQ---------------GLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 141 ----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
+........ .++++++||++|.|+++++++|...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 111111222 237999999999999999999987654
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=7.4e-20 Score=153.47 Aligned_cols=157 Identities=21% Similarity=0.212 Sum_probs=105.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCC--CCC----------CCccc-------------------eeEeEEEEEEEC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF--YPN----------SKSTI-------------------GVEFQTQKMDIN 59 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~--~~~----------~~~~~-------------------~~~~~~~~~~~~ 59 (223)
....++|+++|++++|||||+++|++... ... ...++ |.+.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35569999999999999999999986531 110 00110 112222222233
Q ss_pred CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--c
Q 027417 60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--V 137 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~ 137 (223)
.....+.+|||||++.|...+...+..+|++|+|+|++++...+ ...|+..+.... ..|+|+|+||+|+.+..+ +
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLLG--IKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHH
Confidence 33467889999999999888888999999999999999864322 233443333321 246899999999975321 1
Q ss_pred --CHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHHH
Q 027417 138 --TTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 138 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~ 170 (223)
..++...++..++ ++++++||++|.|+.++++.
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 2345566677777 67999999999999986543
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.82 E-value=5.1e-20 Score=157.23 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=83.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCC-----CccceeEeEEEEEEECCEEEEEEEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFY-----------------PNS-----KSTIGVEFQTQKMDINGKEVKAQIW 68 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~-----------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~ 68 (223)
.....+|+|+|++|+|||||+++|+..... ... ....+.......+... .+.+.||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~li 87 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLL 87 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEE
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEE
Confidence 345689999999999999999999621000 000 0011111122223333 4678899
Q ss_pred eCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 69 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
||||+..+...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT---TTCCEEEEEECTTSCC
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH---cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999999777666655533 222 2689999999999865
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.7e-21 Score=165.37 Aligned_cols=157 Identities=20% Similarity=0.144 Sum_probs=102.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----------------------------ccceeEeEEEEEEECCEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-----------------------------STIGVEFQTQKMDINGKE 62 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 62 (223)
...++|+|+|++++|||||+++|++........ ...|++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457999999999999999999998753221110 001233322222333344
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhh---HHHHHHHHHHHhhcCCCC-CcEEEEEeCCCCCCCcccC
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQT---FDSIGRWLNELHTHSDMN-VVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~-~p~ivv~nK~Dl~~~~~~~ 138 (223)
+.+.||||||++.+...+...+..+|++|+|+|++++.. +.....+...+......+ .|+|+|+||+|+...++..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 678899999999999999999999999999999987521 101111111111111113 4589999999998633322
Q ss_pred H----HHHHHHHHHc-----CCeEEEEccCCCCCHHHHH
Q 027417 139 T----AEGKALAEAQ-----GLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 139 ~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~ 168 (223)
. ++...++... +++++++||++|.|+.++.
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 2 2333344444 3589999999999998763
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=1.1e-20 Score=159.73 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=91.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCC----------------------CCC-----ccceeEeEEE--EEEECC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD--EFYP----------------------NSK-----STIGVEFQTQ--KMDING 60 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~--~~~~----------------------~~~-----~~~~~~~~~~--~~~~~~ 60 (223)
...++|+++|++++|||||+++|++. .+.. ..+ ...|.+.... .+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 56799999999999999999999752 1110 000 0012222221 22233
Q ss_pred EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCc-
Q 027417 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR---QTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAR- 135 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~- 135 (223)
...+.||||||++.|...+...+..+|++|+|+|+++. .+|+....|...+......++| +|+++||+|+....
T Consensus 120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 36788999999999999888899999999999999986 2333222233332222223566 89999999996421
Q ss_pred -----ccCHHHHHHHHHHc-------CCeEEEEccCCCCCHHHHHH
Q 027417 136 -----EVTTAEGKALAEAQ-------GLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 136 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+...++...++... +++++++||++|.|+.++++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 11223455666655 46699999999999988763
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=2.5e-20 Score=148.87 Aligned_cols=162 Identities=17% Similarity=0.214 Sum_probs=103.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------Cccc-----------------e---eEeE-----------
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS------KSTI-----------------G---VEFQ----------- 52 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~------~~~~-----------------~---~~~~----------- 52 (223)
.....++|+|+|.+|||||||+++|++..+.+.. .++. | ++..
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999998764211 1210 0 0000
Q ss_pred ------------EEEEEE-CCEEEEEEEEeCCCch-------------hhhchhHhhhcCCCEEE-EEEECCCHhhHHHH
Q 027417 53 ------------TQKMDI-NGKEVKAQIWDTAGQE-------------RFRAVTSAYYRGAVGAL-LVYDISRRQTFDSI 105 (223)
Q Consensus 53 ------------~~~~~~-~~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~ 105 (223)
...+.+ ......+.||||||.. .+......+++.++.+| +|+|+++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 000000 0012578899999953 34556667888888776 79999886554443
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--C-CeEEEEccCCCCCHHHHHHHHHHH
Q 027417 106 GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ--G-LFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 106 ~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
..|+..+. ..+.|+++|+||+|+.+......+......... + .+++++||+++.|+++++++|...
T Consensus 182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 182 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 34555543 346899999999999764432222222110011 2 357889999999999999998763
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=2.2e-21 Score=163.92 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=105.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 91 (223)
++.++|+++|++++|||||+++|.+..+.....+.++.+.....+..++ ..++||||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999987655433322222222112222233 46789999999999999988899999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--ccCHHH--HHHHHHHcC--CeEEEEccCCCC
Q 027417 92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR--EVTTAE--GKALAEAQG--LFFMETSALDSS 162 (223)
Q Consensus 92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~ 162 (223)
+|+|+++ +.+.+.+ ..+.. .+.|+++++||+|+...+ .+..+. ...++..++ ++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 9999988 4444432 22222 268999999999997531 111110 001112222 689999999999
Q ss_pred CHHHHHHHHHH
Q 027417 163 NVTAAFQTVVT 173 (223)
Q Consensus 163 ~i~~~~~~l~~ 173 (223)
|++++|++|..
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999999863
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=2.4e-19 Score=135.90 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=100.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----------hhchh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------FRAVT 80 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~ 80 (223)
.....+|+|+|++|||||||+++|.+..+.....++.|.+.....+.+.+ .+.+||+||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999998764333344555554433333333 466999999632 23333
Q ss_pred Hhhh---cCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcC--C
Q 027417 81 SAYY---RGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQG--L 151 (223)
Q Consensus 81 ~~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~ 151 (223)
..++ ..++++++++|++++.+.. .+..|+.. .+.|+++++||+|+.+..+ ...+.++.++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3344 5789999999999865543 23334321 2588999999999875321 12345555655554 4
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHH
Q 027417 152 FFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 152 ~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
.++++||+++.|++++++.|.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCHHHHHHHHHHHH
Confidence 588999999999999999987654
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=2.9e-19 Score=161.52 Aligned_cols=160 Identities=17% Similarity=0.121 Sum_probs=107.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDE-------FYP-------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
.....++|+++|++++|||||+++|++.. +.. ....+.|.++....+.++.....+.||||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 44567999999999999999999998631 000 0011223333333334444456788999999999
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHHHHHcC-
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDARE---VTTAEGKALAEAQG- 150 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~- 150 (223)
|...+...+..+|++|+|+|+++....+. ..|+..+... ++| +|+++||+|+.+..+ ...++...++...+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 99888889999999999999998543222 3333444332 577 789999999975322 12345666777665
Q ss_pred ----CeEEEEccCCC--------CCHHHHHHHHHH
Q 027417 151 ----LFFMETSALDS--------SNVTAAFQTVVT 173 (223)
Q Consensus 151 ----~~~~~~Sa~~~--------~~i~~~~~~l~~ 173 (223)
++++++||++| .|+.++++.|..
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 57999999999 356666666654
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.79 E-value=3.4e-20 Score=156.31 Aligned_cols=155 Identities=18% Similarity=0.157 Sum_probs=102.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC------------------C----C-----ccceeEeEEEEEEECCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFYPN------------------S----K-----STIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~------------------~----~-----~~~~~~~~~~~~~~~~~ 61 (223)
....++|+++|++++|||||+++|++. .+... + + ...|.+.......+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 346799999999999999999999864 11100 0 0 00122221111223334
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hHH---HHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TFD---SIGRWLNELHTHSDMNVV-TILVGNKSDLKDA 134 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~ 134 (223)
...+.||||||++.|...+...+..+|++|+|+|+++.. +|+ ....++..+.. .+.| +|+++||+|+.+.
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence 467899999999999999999999999999999999763 231 11222222222 2455 8999999999742
Q ss_pred cc----cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHH
Q 027417 135 RE----VTTAEGKALAEAQG-----LFFMETSALDSSNVTAAF 168 (223)
Q Consensus 135 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 168 (223)
.+ ...++...++...+ ++++++||++|.|+.++.
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 11 12344555666665 679999999999997553
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.77 E-value=5.3e-18 Score=133.13 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=84.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc-----
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR----- 85 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----- 85 (223)
...++|+|+|.+|+|||||+++|++..... ...+..+.......+..++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 457999999999999999999999877532 2222223333444445555 47889999998776555444433
Q ss_pred ----CCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCC--CcEEEEEeCCCCCCCcccC
Q 027417 86 ----GAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMN--VVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 86 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~ 138 (223)
.+|++|+|++++... +... ..|+..+....... .|+++|+||+|+...+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 789999999998754 3333 46666665543222 4899999999986443333
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=4.8e-18 Score=149.68 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=109.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEE-------EEE---------------------------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQT-------QKM--------------------------- 56 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~-------~~~--------------------------- 56 (223)
...++|+|+|.+|+|||||+|+|++..+.+. ..+++...... ...
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3568999999999999999999998775442 23332110000 011
Q ss_pred -------------------EECCEE--EEEEEEeCCCchh---hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHH
Q 027417 57 -------------------DINGKE--VKAQIWDTAGQER---FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL 112 (223)
Q Consensus 57 -------------------~~~~~~--~~~~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 112 (223)
..+... ..+.||||||... .......+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 111000 2578999999655 3345556789999999999999988877777676554
Q ss_pred hhcCCCCCcEEEEEeCCCCCCCcccCHH----------HHHH-----HHHH--------cCCeEEEEccC----------
Q 027417 113 HTHSDMNVVTILVGNKSDLKDAREVTTA----------EGKA-----LAEA--------QGLFFMETSAL---------- 159 (223)
Q Consensus 113 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~---------- 159 (223)
.. .+.|+++|+||+|+.....++.+ .... +... ...+++++||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 33 25789999999998643211111 1111 1111 12369999999
Q ss_pred ----CCCCHHHHHHHHHHHHHHHH
Q 027417 160 ----DSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 160 ----~~~~i~~~~~~l~~~~~~~~ 179 (223)
++.|+.++++.|...+....
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999988765433
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=4.8e-19 Score=145.21 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=105.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccce-eEeEE------------E-------------------------
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG-VEFQT------------Q------------------------- 54 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~-~~~~~------------~------------------------- 54 (223)
...+|+|+|++|||||||+++|++..+.+....+.+ ..... .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999776433221111 00000 0
Q ss_pred --------------EEEE-CCEEEEEEEEeCCCchhh-------------hchhHhhhcCCCEEEEEEECCCHhhHHHHH
Q 027417 55 --------------KMDI-NGKEVKAQIWDTAGQERF-------------RAVTSAYYRGAVGALLVYDISRRQTFDSIG 106 (223)
Q Consensus 55 --------------~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 106 (223)
...+ ......+++|||||...+ ..+...++..+|++|+++|..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 011235789999997665 556677889999999999876543222 3
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417 107 RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 107 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
.|+..+......+.|+++|+||+|+.+......+....+....+.+|+++++.++.++++.+..+.
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 445555555555789999999999986555445545544556678899999999888877655543
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.76 E-value=8.9e-20 Score=157.91 Aligned_cols=152 Identities=22% Similarity=0.218 Sum_probs=82.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------------------CccceeEeEEEEEEECCE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-----------------------------KSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (223)
....++|+|+|++++|||||+++|++....... ....|++.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999642100000 001133333333334444
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hH---HHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCC
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TF---DSIGRWLNELHTHSDMNVV-TILVGNKSDLKDA 134 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~ 134 (223)
...+.||||||+..|...+...+..+|++|+|+|++++. ++ ......+..+... ++| +|+|+||+|+...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccc
Confidence 578899999999999988888899999999999998632 11 0011111222222 454 8999999998753
Q ss_pred cccC----HHHHHHHH-HHcCC-----eEEEEccCCCCCHH
Q 027417 135 REVT----TAEGKALA-EAQGL-----FFMETSALDSSNVT 165 (223)
Q Consensus 135 ~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 165 (223)
.... .++...+. ...++ +++++||++|.|+.
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2211 22333444 33444 69999999999998
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=4.5e-18 Score=141.03 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhchhH---hhhcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTS---AYYRGA 87 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~---~~~~~~ 87 (223)
..|+|+|++|||||||+++|.+........+.++.......+..++ ...+.+||+||... +..+.. ..+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999988643222222222233333444443 24678999999632 212222 234579
Q ss_pred CEEEEEEECCCHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417 88 VGALLVYDISRRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
+.+++++|++ ...+..+..|.+++..+.. ...|.++|+||+|+... ...++........+.+++.+||+++.|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999998 5567777777766654421 25789999999998753 22344445555567889999999999999
Q ss_pred HHHHHHHHHHHH
Q 027417 166 AAFQTVVTEIYN 177 (223)
Q Consensus 166 ~~~~~l~~~~~~ 177 (223)
+++++|.+.+.+
T Consensus 314 eL~~~i~~~l~~ 325 (416)
T 1udx_A 314 ALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.76 E-value=4.4e-18 Score=149.28 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=81.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------Cc---cceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-------------KS---TIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
+...+|+|+|+.|+|||||+++|++....... .+ ..+.++......+....+.+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45689999999999999999999853221100 00 012222222222222346788999999999
Q ss_pred hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
+......+++.+|++++|+|+++....... .++..+.. .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence 988899999999999999998876443333 33344433 268999999999986
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=2.4e-19 Score=143.39 Aligned_cols=161 Identities=16% Similarity=0.248 Sum_probs=85.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC-CCCCCCC--------ccceeEeEEEEEEECCEEEEEEEEeCCCc-------h
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARD-EFYPNSK--------STIGVEFQTQKMDINGKEVKAQIWDTAGQ-------E 74 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~ 74 (223)
....++|+|+|++|||||||+++|.+. .++.... ++.+...........+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 455699999999999999999998875 3332221 11111111111122334567899999997 4
Q ss_pred hhhchhH-------hhhc-------------CCCEEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 75 RFRAVTS-------AYYR-------------GAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 75 ~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
.+..+.. .++. .+++++++.+.+. .+++.+. .++..+ . .+.++++|+||.|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---T-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---H-hcCCEEEEEEeCCCCC
Confidence 4444443 3332 2334455544332 1233332 233332 2 3579999999999876
Q ss_pred Cccc--CHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417 134 AREV--TTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
.+++ ..+++.+++..+++++|++||+++ |++++|..+.+.+.+
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 4333 346778888999999999999999 999999999887743
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=6.9e-18 Score=148.57 Aligned_cols=117 Identities=21% Similarity=0.173 Sum_probs=84.5
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhcC--CC------CC------------CCCccceeEeEEEEEEECCEEEEEEEE
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFARD--EF------YP------------NSKSTIGVEFQTQKMDINGKEVKAQIW 68 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~--~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 68 (223)
...+..++|+|+|++|+|||||+++|+.. .+ .. ....|. ......+... .+.+.||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi--~~~~~~~~~~--~~~i~li 82 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI--TAAVTTCFWK--DHRINII 82 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEET--TEEEEEE
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccc--ccceEEEEEC--CeEEEEE
Confidence 34567799999999999999999999842 11 00 011111 1112222233 3678899
Q ss_pred eCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 69 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
||||+..+...+..+++.+|++|+|+|+++..+......|.... . .+.|+++++||+|+..
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~-~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE-K---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-H---TTCCEEEEEECTTSTT
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH-H---cCCCEEEEEECCCccc
Confidence 99999999889999999999999999999987777776665432 2 2689999999999865
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.74 E-value=1.1e-17 Score=134.48 Aligned_cols=162 Identities=16% Similarity=0.179 Sum_probs=96.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-cccee----EeEEE-------------------------------
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGV----EFQTQ------------------------------- 54 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~----~~~~~------------------------------- 54 (223)
....++|+|+|.+|||||||+++|++..+.+... ..+.. .....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3456899999999999999999999977632211 00000 00000
Q ss_pred ---------------------EEE-ECCEEEEEEEEeCCCchh-------------hhchhHhhhcCCCEEEEEEECCCH
Q 027417 55 ---------------------KMD-INGKEVKAQIWDTAGQER-------------FRAVTSAYYRGAVGALLVYDISRR 99 (223)
Q Consensus 55 ---------------------~~~-~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~ 99 (223)
.+. .......+.||||||... +......++..+|++|+|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 011124688999999643 445666788999999999997443
Q ss_pred h-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC---C---CCCHHHHHHHHH
Q 027417 100 Q-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL---D---SSNVTAAFQTVV 172 (223)
Q Consensus 100 ~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~l~ 172 (223)
. .......+...+ ...+.|+++|+||+|+........+.........+..++++++. + +.|+.++++.+.
T Consensus 181 ~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 181 DLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp CSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred chhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 2 111111223333 23478999999999997644322222221111122567777655 3 788899988876
Q ss_pred HHH
Q 027417 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
..+
T Consensus 258 ~~~ 260 (315)
T 1jwy_B 258 LYF 260 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=1.9e-17 Score=141.48 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=78.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------------------CccceeEeEEEEEEECCEEEEEEEEeCC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS--------------------KSTIGVEFQTQKMDINGKEVKAQIWDTA 71 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 71 (223)
...++|+|+|++|+|||||+++|+........ ....|.+.......+....+.+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 45689999999999999999999863111000 0011222111112222234678899999
Q ss_pred CchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
|+..+......+++.+|++|+|+|+++...... ..++..+. ..+.|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 999998888889999999999999988543222 22222222 23689999999999865
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=7.8e-18 Score=132.75 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=81.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhH-------hh-
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS-------AY- 83 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~-------~~- 83 (223)
...++|+++|.+|+|||||+++|++..+..... ..+.+.......+....+.+.+|||||...+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 457999999999999999999999877532221 112222222222222346788999999866543222 11
Q ss_pred -hcCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCC--CcEEEEEeCCCCCCCcccC
Q 027417 84 -YRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMN--VVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 84 -~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~ 138 (223)
.+.+|++|+|+|++.. ++... ..|+..+....... .|+++|+||+|+...+...
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~ 173 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP 173 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence 2469999999999763 34333 46776665443222 6999999999987544333
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=4.6e-18 Score=141.02 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=84.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-----
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-NS-------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR----- 77 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----- 77 (223)
....++|+|+|++|||||||++.|++..+.. .. .++.+...........+....+++||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 4556899999999999999999999876532 11 1121211111111223334578999999965431
Q ss_pred --ch------------------hHhhhcCCCEEEEEEECCCH-hhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 78 --AV------------------TSAYYRGAVGALLVYDISRR-QTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 78 --~~------------------~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
.+ ...++..+++.+++|+.... .+++.+. .|+..+. .+.|+|+|+||+|+...+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 11 11233455554555555443 3454443 5766664 268999999999998655
Q ss_pred ccCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 136 EVTT--AEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 136 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
++.. +++...+...+++++++|++++.++.++|..+..
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 5544 6677788888999999999999999988877654
No 187
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.72 E-value=2.6e-18 Score=137.46 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=109.1
Q ss_pred HHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh-hHHHHH
Q 027417 29 NLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIG 106 (223)
Q Consensus 29 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 106 (223)
+|+.+++.+.+. ..+.+|+|..+. ..+..++ .+.+||+ ++++..++..+++++|++|+|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 678888888887 788899885543 2222222 6789999 7899999999999999999999999997 789999
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHHHHHH
Q 027417 107 RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 107 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
.|+..+.. .++|+++|+||+|+.+.+.+ +++.+++..++ ++++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99988765 36899999999999764332 45677777777 89999999999999999988754
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=2.3e-16 Score=139.06 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=83.9
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------CCCc---cceeEeEEE--EEEEC-----CEEEEEE
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARD--EFYP-----------NSKS---TIGVEFQTQ--KMDIN-----GKEVKAQ 66 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~-----------~~~~---~~~~~~~~~--~~~~~-----~~~~~~~ 66 (223)
..+..++|+|+|+.|+|||||+++|+.. .+.. .+.+ ..+.+.... .+.+. +..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 3456789999999999999999999752 1110 0000 112222221 22222 2347899
Q ss_pred EEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 67 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
||||||+..|...+..+++.+|++|+|+|+++.........|... . ..+.|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-N---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-H---HcCCCEEEEEeCCCccc
Confidence 999999999988899999999999999999987666555555332 2 22689999999999864
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=7.2e-18 Score=139.42 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQK--M-------------------DING-KEVKAQIWDTAG 72 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~l~D~~G 72 (223)
++|+|+|.+|||||||+++|++........+.++.+..... + .+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632222222222211111 1 1122 257899999999
Q ss_pred chh----hhchhH---hhhcCCCEEEEEEECCCH
Q 027417 73 QER----FRAVTS---AYYRGAVGALLVYDISRR 99 (223)
Q Consensus 73 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 99 (223)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 346899999999999875
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=8.6e-17 Score=141.68 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=83.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhc--CCCCC-----------CC-----CccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFAR--DEFYP-----------NS-----KSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
.+...+|+|+|++|+|||||+++|+. +.+.. .+ ...++.......+... .+.+.||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 35678999999999999999999985 22210 00 0000111111223333 36788999999
Q ss_pred chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
+..+...+..+++.+|++|+|+|+++..+......|.. +... +.|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 99998888999999999999999999777776666644 3322 689999999999865
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=6e-18 Score=138.29 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=93.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------ccc--------------------------------------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK------STI-------------------------------------- 47 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~------~~~-------------------------------------- 47 (223)
...++|+|+|.+|||||||+++|++..+.+... ++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 446899999999999999999999987642211 210
Q ss_pred -----eeEeEEEEEEEC-CEEEEEEEEeCCCch-------------hhhchhHhhhcCCC-EEEEEEECCCHhhHHHHHH
Q 027417 48 -----GVEFQTQKMDIN-GKEVKAQIWDTAGQE-------------RFRAVTSAYYRGAV-GALLVYDISRRQTFDSIGR 107 (223)
Q Consensus 48 -----~~~~~~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 107 (223)
|+......+.+. .....+.||||||.. .+..+...++..++ ++++++|.+....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 000000001110 113568899999953 33445566666555 5555666654322122222
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH--HHHHcC-CeEEEEccCCCCCHHHHHHHHHH
Q 027417 108 WLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA--LAEAQG-LFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 108 ~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
++.. ....+.|+++|+||+|+.+......+.... +....+ .+++.+||+++.|++++++++..
T Consensus 189 i~~~---~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKE---VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH---HCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHH---hCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333 334478999999999997543311211110 001122 24678999999999999988865
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.65 E-value=1e-16 Score=122.39 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=94.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEe--------------EEEEEEE----------------CCEE
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEF--------------QTQKMDI----------------NGKE 62 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 62 (223)
...+|+|+|.+|||||||+++|.+.............+. ....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999986522111000000000 0011111 0112
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG 142 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 142 (223)
+.+.+|||+|.... ...+....+.+|+|+|+.+.... ...+.... +.|+++|+||+|+........++.
T Consensus 109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDDV--VEKHPEIF------RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTTH--HHHCHHHH------HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcchh--hhhhhhhh------hcCCEEEEecccCCcchhhHHHHH
Confidence 46779999884110 11111357889999998775321 11111111 478899999999864333456666
Q ss_pred HHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417 143 KALAEAQ--GLFFMETSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 143 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
...+... +++++++||++|.|+++++++|.+.+.+.
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6665554 47899999999999999999998776443
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=4.5e-15 Score=120.64 Aligned_cols=145 Identities=17% Similarity=0.106 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchhhh--
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQERFR-- 77 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~-- 77 (223)
++|+|+|.+|||||||+++|++........+..+.......+.+++. ...+.+|||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987643322222222222223334432 2578899999976542
Q ss_pred -----chhHhhhcCCCEEEEEEECCCH----------hhHHHHHHHHHH-------------------------------
Q 027417 78 -----AVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNE------------------------------- 111 (223)
Q Consensus 78 -----~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------- 111 (223)
......++.+|++++|+|+++. +.++.+..+..+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 2233457899999999999862 122222111111
Q ss_pred ---------Hh-------------------hc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417 112 ---------LH-------------------TH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL 159 (223)
Q Consensus 112 ---------i~-------------------~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (223)
+. .+ ....+|+++++|+.|..-......+..+.++...+++++++||+
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 11 01 12249999999999964211223566777888889999999965
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.63 E-value=3.2e-16 Score=128.07 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=69.5
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG 142 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 142 (223)
+.+.||||||... .....+..+|++|+|+|....+.+..+.. .-.+.|+++|+||+|+....... ...
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LAA 239 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HHH
Confidence 5688999999533 23344588999999999876544322211 11246899999999986432211 111
Q ss_pred HHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417 143 KALAEA----------QGLFFMETSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 143 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
.++... ++.+++++||++|.|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 122221 25789999999999999999999887754
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=4.9e-18 Score=130.17 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=89.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeE------------EEEEEEC-CE------------------
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQ------------TQKMDIN-GK------------------ 61 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 61 (223)
..++|+|+|.+|||||||+++|+...+...+.++.+.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999976554433333333321 1111111 10
Q ss_pred -EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 027417 62 -EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA 140 (223)
Q Consensus 62 -~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 140 (223)
...+.++|++|.-.. ...+-...+..+.++|......... .+...+ ..|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence 012345555442000 0011112344455666432111000 000111 3678999999998754345667
Q ss_pred HHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 141 EGKALAEAQ--GLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 141 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
+...++... +++++++||++|.|++++|+.|.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 777776654 578999999999999999999987664
No 196
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=1.3e-14 Score=124.62 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=82.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCC------------------CC----CCCCccceeEeEEEEEEECCEEEEEEEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDE------------------FY----PNSKSTIGVEFQTQKMDINGKEVKAQIW 68 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 68 (223)
.....||+|+|+.++|||||..+|+... .. .+....+++......+.+. .+.++|+
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlI 105 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLL 105 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEE
Confidence 3457899999999999999999996310 00 0001111111112223334 4778899
Q ss_pred eCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 69 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
||||+..|..-....++-+|++|+|+|+...-.-+...-|...... ++|+++++||+|...
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~----~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR----ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCCEEEEEECTTSCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh----CCceEEEEecccchh
Confidence 9999999999999999999999999999986555555556444332 699999999999864
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=9.4e-16 Score=137.63 Aligned_cols=119 Identities=19% Similarity=0.167 Sum_probs=87.8
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CCCccceeEeEEEEEE------------EC
Q 027417 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYP------------------NSKSTIGVEFQTQKMD------------IN 59 (223)
Q Consensus 10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~------------~~ 59 (223)
.....++|+|+|++++|||||+++|++..... ....|+........+. .+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 34567899999999999999999998641100 0001211112222222 23
Q ss_pred CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417 60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 132 (223)
+..+.++||||||+..|...+..+++.+|++|+|+|++++.+++....|..... .+.|+++++||+|+.
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 447889999999999999999999999999999999999888887766655433 268999999999986
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=5.7e-15 Score=120.66 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-------------------EEEEEEEEeCCCchh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-------------------KEVKAQIWDTAGQER 75 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~G~~~ 75 (223)
++|+|+|.+|||||||+++|++........+..+.........+++ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6799999999999999999997643222222111111122222321 235788999999765
Q ss_pred hh-------chhHhhhcCCCEEEEEEECCCH----------hhHHHHHHHHHH---------------------------
Q 027417 76 FR-------AVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNE--------------------------- 111 (223)
Q Consensus 76 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~--------------------------- 111 (223)
.. ......++.+|++++|+|+++. +.+..+..+..+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 2233457899999999999851 111111110000
Q ss_pred ------------Hhh-------------------c-CCCCCcEEEEEeCCCCC--CC-cccCHHHHHHHHHHcCCeEEEE
Q 027417 112 ------------LHT-------------------H-SDMNVVTILVGNKSDLK--DA-REVTTAEGKALAEAQGLFFMET 156 (223)
Q Consensus 112 ------------i~~-------------------~-~~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~ 156 (223)
+.. + .-..+|+++++|+.|.. +. +....+..+.+++..+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 000 0 01137999999999842 22 1234566778888889999999
Q ss_pred ccCCCCCHHHHHHH
Q 027417 157 SALDSSNVTAAFQT 170 (223)
Q Consensus 157 Sa~~~~~i~~~~~~ 170 (223)
||+...++.++.+.
T Consensus 242 SAk~E~el~eL~~~ 255 (368)
T 2dby_A 242 SARLEAELAELSGE 255 (368)
T ss_dssp CHHHHHHHHTSCHH
T ss_pred echhHHHHHHhchH
Confidence 99987777666554
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.58 E-value=1.8e-15 Score=129.93 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=82.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCccceeEeEEEEEEEC------CE----------------E---
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFY---PNSKSTIGVEFQTQKMDIN------GK----------------E--- 62 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~------~~----------------~--- 62 (223)
....++|+|+|.+|+|||||+|+|++..+. ....+++.. ......-. +. +
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~--~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC--FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS--EEEEECCSSSEEECCC------------------CC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce--EEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 456799999999999999999999998763 222333211 11000000 00 0
Q ss_pred --------------EEEEEEeCCCchh-----------hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC
Q 027417 63 --------------VKAQIWDTAGQER-----------FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD 117 (223)
Q Consensus 63 --------------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 117 (223)
..+.||||||... +......++..+|++|+|+|+++....+....|+..+..
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--- 216 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--- 216 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence 2578999999764 445666778899999999999886555556666666543
Q ss_pred CCCcEEEEEeCCCCCCC
Q 027417 118 MNVVTILVGNKSDLKDA 134 (223)
Q Consensus 118 ~~~p~ivv~nK~Dl~~~ 134 (223)
.+.|+++|+||+|+...
T Consensus 217 ~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVET 233 (550)
T ss_dssp CGGGEEEEEECGGGSCH
T ss_pred cCCCEEEEEECCCccCH
Confidence 35899999999998754
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.3e-14 Score=113.82 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=102.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYY 84 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~ 84 (223)
....+|+|+|.|+||||||+|+|++........+.++.+.....+.+.+ ..++++||||... ........+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 3457999999999999999999998766555556666677777777777 4577999999532 112233456
Q ss_pred cCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC--------CcccCHHHHHHHHHHcCCeEEE
Q 027417 85 RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKD--------AREVTTAEGKALAEAQGLFFME 155 (223)
Q Consensus 85 ~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~ 155 (223)
+.+|++++|+|++++.. .+.+...+..+..... +.|.+++.||.|... ......++.+.+...+.+.--+
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~-~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLN-KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEET-CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhHhhc-cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 88999999999999743 3334444444332222 577888999999642 1335567777766665543222
Q ss_pred EccCCCCCHHHHHH
Q 027417 156 TSALDSSNVTAAFQ 169 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~ 169 (223)
+--..+...+++.+
T Consensus 227 v~~~~nv~eddl~d 240 (376)
T 4a9a_A 227 IAFRCDATVDDLID 240 (376)
T ss_dssp EEECSCCCHHHHHH
T ss_pred eeecccCCHHHHHH
Confidence 22334445555544
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.55 E-value=2.8e-15 Score=122.12 Aligned_cols=103 Identities=11% Similarity=0.009 Sum_probs=62.6
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG 142 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 142 (223)
+.+.++||+|.... .......+|++++|+|++++...+.+.. .+ ...|.++|+||+|+...... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 46789999996322 2344678999999999987643322211 11 14688999999998632111 0111
Q ss_pred HHHHH----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417 143 KALAE----------AQGLFFMETSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 143 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
..+.. .+..+++.+||+++.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 12211 124578999999999999999999876643
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=7.1e-15 Score=119.48 Aligned_cols=103 Identities=16% Similarity=0.117 Sum_probs=65.3
Q ss_pred EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--H
Q 027417 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT--A 140 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~ 140 (223)
+.+.||||||...... .....+|++++|+|.+....+..+... . .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5688999999654332 245899999999999765432211110 0 1367899999999875322111 1
Q ss_pred HHHHHHHHc-------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 141 EGKALAEAQ-------GLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 141 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
+.+...... ..+++++||++|.|++++++.|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222222222 356899999999999999999988765
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.51 E-value=4.6e-15 Score=129.66 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=81.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCC------C---CC-----ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD--EFYP------N---SK-----STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~--~~~~------~---~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 77 (223)
..||+|+|+.++|||||..+|+.. .... . .+ ..-|.+.......+....+.++|+|||||..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 468999999999999999998631 1110 0 00 000223333333334455778899999999999
Q ss_pred chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
.-....++-+|++|+|+|+...-.-+...-|...... ++|.++++||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEecccccc
Confidence 9999999999999999999986444444445443333 688999999999754
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.50 E-value=6.2e-13 Score=117.61 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=82.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCCC--------CccceeEeE--EEEEEEC-----CEEEEEEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARD--------EFYPNS--------KSTIGVEFQ--TQKMDIN-----GKEVKAQI 67 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~--------~~~~~~--------~~~~~~~~~--~~~~~~~-----~~~~~~~l 67 (223)
-+...||+|+|+.++|||||..+|+.. ...... ..--|.+.. ...+.+. ...+.++|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 356789999999999999999998631 111000 000122222 2222222 13578999
Q ss_pred EeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 68 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
+|||||-.|..-....++-+|++|+|+|+...-.-+...-|...... ++|.++++||+|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 99999999999999999999999999999986555555555554443 689999999999753
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.49 E-value=7.4e-14 Score=122.87 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=96.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CccceeEe---------------------------------------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEF--------------------------------------- 51 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~--------------------------------------- 51 (223)
-..++|+|+|.+++|||||+|+|++..+.+.. ..++....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45689999999999999999999997763221 11111000
Q ss_pred -----------EEEEEEECCEEEEEEEEeCCCchh-------------hhchhHhhh-cCCCEEEEEEECCCHhhHHHHH
Q 027417 52 -----------QTQKMDINGKEVKAQIWDTAGQER-------------FRAVTSAYY-RGAVGALLVYDISRRQTFDSIG 106 (223)
Q Consensus 52 -----------~~~~~~~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 106 (223)
....+... ....+.|+||||... .......++ ..+|++++|+|+++...-....
T Consensus 129 ~g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00111111 112477999999533 222333344 5789999999998753322222
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-H-HHHcC-CeEEEEccCCCCCHHHHHHHHHH
Q 027417 107 RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA-L-AEAQG-LFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 107 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
.++..+. ..+.|+++|+||+|+............. . ....+ .+++.+||++|.|++++++.+..
T Consensus 208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 3333333 3478999999999998643332211110 0 00012 24677999999999999988875
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.47 E-value=2.7e-13 Score=105.99 Aligned_cols=108 Identities=13% Similarity=-0.016 Sum_probs=66.6
Q ss_pred EEEEEEeCCCchhhhchhH------hhhcCCCEEEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 63 VKAQIWDTAGQERFRAVTS------AYYRGAVGALLVYDISRR---QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
+.+.||||||......... ..+.. +++|+++|.... ..+.....+.... ....+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI--DLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH--HHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH--hcccCCCeEEEEecccccc
Confidence 4788999999776543221 23455 888888887542 2222222111111 1112589999999999875
Q ss_pred CcccCHHHHHHH----------------------------HHHcC--CeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 134 AREVTTAEGKAL----------------------------AEAQG--LFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 134 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..+. ++..++ +...+ ++++++||+++.|+++++++|.+.+
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 3221 111111 23333 4799999999999999999998665
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=2.8e-13 Score=109.82 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=64.1
Q ss_pred EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH
Q 027417 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE 141 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 141 (223)
.+.+.|+||+|..... ......+|++++++|....+..+.+..+. . ..+.++++||+|+......+...
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence 3567899999964322 23457899999999987543322111111 1 24567778999975432222222
Q ss_pred HHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417 142 GKALAEA----------QGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 142 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
.+.+... +..+++.+||+++.|++++++.|.+.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3333221 1356899999999999999999987653
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.42 E-value=3.6e-13 Score=107.57 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=80.0
Q ss_pred chhhhchhHhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHcC
Q 027417 73 QERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT-TAEGKALAEAQG 150 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 150 (223)
++++..+...++.++|++|+|+|++++. +++.+..|+..+.. .++|+++|+||+|+.+..++. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 4667777778899999999999999986 89989999987654 368999999999997543222 345566677788
Q ss_pred CeEEEEccCCCCCHHHHHHHHH
Q 027417 151 LFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 151 ~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
.+++++||+++.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998874
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=4e-11 Score=98.59 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=62.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER 75 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~ 75 (223)
....+|+|+|++|||||||+++|++... .....|+++.+.....+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4457999999999999999999999765 4444444444444555555541 13578999999432
Q ss_pred -------hhchhHhhhcCCCEEEEEEECCC
Q 027417 76 -------FRAVTSAYYRGAVGALLVYDISR 98 (223)
Q Consensus 76 -------~~~~~~~~~~~~d~~i~v~d~~~ 98 (223)
........++.+|++++|+|..+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23345566789999999999863
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=106.20 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=53.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchhh
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQERF 76 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~ 76 (223)
...++|+|+|.+|||||||+++|++..+.....++++.+.....+.+++. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999987664444444444444445554432 235889999997654
Q ss_pred hc-------hhHhhhcCCCEEEEEEECCCHhh
Q 027417 77 RA-------VTSAYYRGAVGALLVYDISRRQT 101 (223)
Q Consensus 77 ~~-------~~~~~~~~~d~~i~v~d~~~~~s 101 (223)
.. .+..+++.+|++++|+|+.+..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 32 45677899999999999986433
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=90.71 Aligned_cols=103 Identities=6% Similarity=-0.019 Sum_probs=67.7
Q ss_pred CCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHH----hhcC-CCCCcEEEEEeCC-CCCCCcccCHHHHH
Q 027417 70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL----HTHS-DMNVVTILVGNKS-DLKDAREVTTAEGK 143 (223)
Q Consensus 70 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i----~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~ 143 (223)
.+|++..+.+|.+|+.++|++|||+|.++.+-++ ....+..+ .... -.+.|++|++||. |+.. .++..+..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 3478889999999999999999999999875444 33333222 2221 2478999999995 6753 34555544
Q ss_pred HHHH----HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 144 ALAE----AQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 144 ~~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+... ...+.++.|||++|+|+.+.++||...+
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 4322 1245589999999999999999998655
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.00 E-value=4.3e-10 Score=87.80 Aligned_cols=104 Identities=5% Similarity=-0.012 Sum_probs=72.0
Q ss_pred CCCchhhhchhHhhhcCCCEEEEEEECCCHhhHH---HHHHHHHHHhhc-CCCCCcEEEEEeC-CCCCCCcccCHHHHHH
Q 027417 70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFD---SIGRWLNELHTH-SDMNVVTILVGNK-SDLKDAREVTTAEGKA 144 (223)
Q Consensus 70 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~ 144 (223)
.+|++..+..|.+|+.++|++|+|+|.++.+.++ ++......+... .-.+.|++|.+|| -|+.. .++..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 4678889999999999999999999999976544 222222223222 1237899999996 57764 345555443
Q ss_pred HHH----HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417 145 LAE----AQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 145 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
... ...+.+..|||.+|+|+.+.++||...+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 322 1234589999999999999999998765
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=2.6e-09 Score=87.46 Aligned_cols=95 Identities=24% Similarity=0.290 Sum_probs=73.3
Q ss_pred chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHHH
Q 027417 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA----LAEA 148 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~ 148 (223)
.+.|...+.++.+.++++++|+|++++. ..|...+..... +.|+++|+||+|+... ....++..+ +++.
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~ 128 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQ 128 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999863 445555555433 6899999999999753 233333333 3566
Q ss_pred cCC---eEEEEccCCCCCHHHHHHHHHHH
Q 027417 149 QGL---FFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 149 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
.+. +++.+||++|.|++++++.|.+.
T Consensus 129 ~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 129 LGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp TTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 777 79999999999999999998653
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.92 E-value=9.1e-11 Score=96.18 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC-----CCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhH
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD-----EFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTS 81 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~ 81 (223)
.+|+++|.+|+|||||+|+|++. .... .....+++.....+.+... +.++||||...... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 57999999999999999999975 1111 1111234444444544432 67999999532211 112
Q ss_pred hhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417 82 AYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL 159 (223)
Q Consensus 82 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (223)
.++ +..+.++++++......+.. +..+......+.|+++++||.|....... ......+.+..+..+.+.++.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~----l~~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~ 313 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGG----LARLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKR 313 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETT----TEEEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred HHhcccccCceEEEEcCCceEEECC----EEEEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCch
Confidence 222 67899999999843211001 11122223346899999999998753332 222334556667666665555
Q ss_pred CCCC
Q 027417 160 DSSN 163 (223)
Q Consensus 160 ~~~~ 163 (223)
+..+
T Consensus 314 ~~~~ 317 (369)
T 3ec1_A 314 YAAE 317 (369)
T ss_dssp GTTT
T ss_pred hhhh
Confidence 4333
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.91 E-value=5e-10 Score=94.85 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=85.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHh------cCCCC---C-CCCcc-----------ceeEeEEEEEE-------------
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFA------RDEFY---P-NSKST-----------IGVEFQTQKMD------------- 57 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~------~~~~~---~-~~~~~-----------~~~~~~~~~~~------------- 57 (223)
.....|+|+|.+||||||+++.|. +.... . .+.+. .+..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 32211 0 00000 01111110000
Q ss_pred ECCEEEEEEEEeCCCchhhhc-hhHh---h--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcE-EEEEeCCC
Q 027417 58 INGKEVKAQIWDTAGQERFRA-VTSA---Y--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT-ILVGNKSD 130 (223)
Q Consensus 58 ~~~~~~~~~l~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~D 130 (223)
.....+.+.|+||||...... +... . ...+|.+++|+|........ .....+.. ..|+ ++|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCc
Confidence 000235678999999653211 1111 1 23799999999998754311 11222222 1564 88999999
Q ss_pred CCCCcccCHHHHHHHHHHcCCeE------------------EEEccCCCCC-HHHHHHHHHHH
Q 027417 131 LKDAREVTTAEGKALAEAQGLFF------------------METSALDSSN-VTAAFQTVVTE 174 (223)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~ 174 (223)
..... ..+.......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKG----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCC----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccch----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 76321 11223334555553 2368889999 99999888754
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.85 E-value=8.5e-11 Score=96.27 Aligned_cols=135 Identities=12% Similarity=0.133 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc----h----hH
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYP-----NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA----V----TS 81 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~----~~ 81 (223)
.+|+++|.+|+|||||+|+|++..... ......+++.....+.+... +.++||||...... + ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 589999999999999999999753211 11122244444444444433 67999999533221 1 11
Q ss_pred hh--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q 027417 82 AY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 82 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (223)
.+ ....+.++++++......+.. +..+......+.|+++++||+|....... ......+.+..+..+++.+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~----l~~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSG----LARFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETT----TEEEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcc----eEEEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 11 256788888888743211001 01122223346899999999998753322 2223344455665544444
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.84 E-value=3.2e-09 Score=83.26 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=70.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------ccceeEeEEEEEEECC--EEEEEEEEeCCCchhhh-------
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSK-------STIGVEFQTQKMDING--KEVKAQIWDTAGQERFR------- 77 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~l~D~~G~~~~~------- 77 (223)
.++++|+|+.|+|||||++.|.+...+.... ...........+.... -...++++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999998753322110 0000000111111111 12367899998832100
Q ss_pred ch-------hHh--------------hhcCCCEEEEEEECCC-HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417 78 AV-------TSA--------------YYRGAVGALLVYDISR-RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 78 ~~-------~~~--------------~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 135 (223)
.+ ... .+..+++.++++|... +-.-.. ...+..+.. ..++|+|.+|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 00 000 1124688888888652 211111 223333332 28899999999987533
Q ss_pred cc--CHHHHHHHHHHcCCeEEE
Q 027417 136 EV--TTAEGKALAEAQGLFFME 155 (223)
Q Consensus 136 ~~--~~~~~~~~~~~~~~~~~~ 155 (223)
+. .....+......++.+|+
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 22 122333445566777654
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=8.7e-09 Score=85.33 Aligned_cols=116 Identities=20% Similarity=0.246 Sum_probs=59.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc--cceeEeEEEEEEE--CCEEEEEEEEeCCCchhh-------------
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKS--TIGVEFQTQKMDI--NGKEVKAQIWDTAGQERF------------- 76 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~------------- 76 (223)
.++++|+|++|+|||||++.|.+..+...... ..+.......+.+ .+....++++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 46799999999999999999998643221110 1122222222222 222346789999874321
Q ss_pred -hchhHhhh-------------cC--CCE-EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417 77 -RAVTSAYY-------------RG--AVG-ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 77 -~~~~~~~~-------------~~--~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 134 (223)
...+..++ .. +|+ ++++.|...+-+-.. ..++..+ . .+.|+|+|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L---~-~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL---D-SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT---C-SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH---h-hCCCEEEEEcchhccch
Confidence 01111111 11 233 555666554332222 1222222 2 47899999999997653
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.81 E-value=9.3e-08 Score=79.11 Aligned_cols=154 Identities=12% Similarity=0.149 Sum_probs=81.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeE-EEEEEECCEEEEEEEEeCCCchhhhchhHh-----hhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQ-TQKMDINGKEVKAQIWDTAGQERFRAVTSA-----YYRG 86 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~-----~~~~ 86 (223)
...|+|+|++|||||||++.|.+...+..-. ...+.... ...+.-......+++||++|.......... .+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3479999999999999999999843322111 11111110 011111111124679999985322111111 2234
Q ss_pred CCEEEEEEECCC--HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-------CCcccCHHH----HHHHH----HHc
Q 027417 87 AVGALLVYDISR--RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK-------DAREVTTAE----GKALA----EAQ 149 (223)
Q Consensus 87 ~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~----~~~ 149 (223)
.+.+++ ++... ..... ....+.. .+.|+++|.||.|+. .-+....++ .+++. ...
T Consensus 149 ~~~~~~-lS~G~~~kqrv~----la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDID----IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp CSEEEE-EESSCCCHHHHH----HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEE-eCCCCccHHHHH----HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555 77762 22111 1222222 258999999999963 111222332 23332 122
Q ss_pred C---CeEEEEcc--CCCCCHHHHHHHHHHHH
Q 027417 150 G---LFFMETSA--LDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 150 ~---~~~~~~Sa--~~~~~i~~~~~~l~~~~ 175 (223)
+ ..++.+|+ .++.|++++.+.+...+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 2 24788999 56667999998887655
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=1e-08 Score=83.98 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=71.1
Q ss_pred CchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q 027417 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA----LAE 147 (223)
Q Consensus 72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~ 147 (223)
.++.|.....++++.++++|+|+|++++.+ .|...+..... +.|+++|+||+|+... ....+...+ ++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 367899999999999999999999999763 34434433333 6899999999999753 223333333 355
Q ss_pred HcCC---eEEEEccCCCCCHHHHHHHHHHH
Q 027417 148 AQGL---FFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 148 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
..+. .++.+||++|.|++++++.|.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 6676 68999999999999999988654
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=2.8e-08 Score=78.36 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=70.4
Q ss_pred EEeCCCch-hhhchhHhhhcCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 027417 67 IWDTAGQE-RFRAVTSAYYRGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK 143 (223)
Q Consensus 67 l~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 143 (223)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..|+ .++|+++|+||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 44578875 35556667789999999999999987653 344443 368999999999997521 122223
Q ss_pred HHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417 144 ALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 144 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
++.+..+.+++.+||+++.|+.++++.+.+.+..
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 4445567899999999999999999988766643
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.60 E-value=4.1e-08 Score=77.41 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=36.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
...++|+++|.||||||||+|+|.+........ ..+++.....+.... .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 456899999999999999999999865432222 223443333333333 46799999954
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.50 E-value=4.2e-08 Score=76.56 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
++|+++|.+|+|||||+|+|.+..... ..++.|++.....+.... .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999866532 222334443333333332 467999999654
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.38 E-value=1.1e-06 Score=73.26 Aligned_cols=86 Identities=16% Similarity=0.057 Sum_probs=51.9
Q ss_pred EEEEEEeCCCchhhhc-hhH-----hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 63 VKAQIWDTAGQERFRA-VTS-----AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
+.+.|+||+|...... ... .....+|.+++|+|......... ....+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCcc---
Confidence 5678999999433211 111 12246899999999987543222 22333322 245678999999763
Q ss_pred cCHHHHHHHHHHcCCeEEEEcc
Q 027417 137 VTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..-.+..+....+.|+..++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 233455566678888776664
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.22 E-value=5.3e-06 Score=69.13 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCchhhhc-hhH---h--hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCC-c-EEEEEeCCCCCC
Q 027417 62 EVKAQIWDTAGQERFRA-VTS---A--YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV-V-TILVGNKSDLKD 133 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ivv~nK~Dl~~ 133 (223)
.+.+.|+||||...... +.. . .+..+|.+++|+|...... .......+.. .. | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCCcc
Confidence 35678999999544211 111 1 1236899999999876532 1122222221 24 5 788999999753
Q ss_pred CcccCHHHHHHHHHHcCCeEEEE
Q 027417 134 AREVTTAEGKALAEAQGLFFMET 156 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~ 156 (223)
. ...+..+....+.|+..+
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 223344666677775443
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.21 E-value=1.3e-06 Score=75.34 Aligned_cols=65 Identities=18% Similarity=0.094 Sum_probs=39.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccc-eeEeEEEEE--EE-CCEEEEEEEEeCCCchh
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI-GVEFQTQKM--DI-NGKEVKAQIWDTAGQER 75 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~l~D~~G~~~ 75 (223)
....++|+|+|.||+|||||+|+|++.........++ +.+.....+ .+ ......+.|+||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4567899999999999999999999876321111111 111111111 11 12234677999999643
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.19 E-value=7.8e-07 Score=69.33 Aligned_cols=93 Identities=16% Similarity=0.070 Sum_probs=61.9
Q ss_pred CCCchh-hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 027417 70 TAGQER-FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA 148 (223)
Q Consensus 70 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (223)
.|||.. ........+.++|++|.|+|+.++.+.... .+. .. ++|.++|+||+|+.+... .+...++.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 366543 233556677899999999999998664321 011 11 689999999999985311 2223344455
Q ss_pred cCCeEEEEccCCCCCHHHHHHHHHH
Q 027417 149 QGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 149 ~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
.+.++ .+||+++.|++++++.+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999999887754
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.18 E-value=1.3e-06 Score=72.54 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=54.6
Q ss_pred EEEEEEEeCCCchh--hhc-h---hHh--hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417 62 EVKAQIWDTAGQER--FRA-V---TSA--YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 62 ~~~~~l~D~~G~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 133 (223)
.+.+.++||||... ... . ... ....++.+++|+|......... ....+... -.+..+|+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence 35677999999533 111 1 111 1235789999999987543222 22333322 245788999999753
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417 134 AREVTTAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
..-.+..+....+.|+..++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 344556666778999877765 5554
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.16 E-value=4.3e-06 Score=66.33 Aligned_cols=92 Identities=16% Similarity=0.062 Sum_probs=56.0
Q ss_pred EEEEEEEeCCCchh--hhc-hhH-----hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCC
Q 027417 62 EVKAQIWDTAGQER--FRA-VTS-----AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLK 132 (223)
Q Consensus 62 ~~~~~l~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~ 132 (223)
.+.+.++||||... ... +.. .....+|.+++|+|...... .......+.. ..+ ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 35678999999665 211 221 12457999999999875321 1122223322 244 67889999965
Q ss_pred CCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
. ....+..+....+.|+..++ .|+++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 3 23445667778889977766 4555544
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.05 E-value=8.7e-06 Score=70.85 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~ 38 (223)
..|+|+|+.|||||||++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999864
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.01 E-value=2.3e-06 Score=68.11 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=61.1
Q ss_pred hhHhhhcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCeEEE
Q 027417 79 VTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEAQGLFFME 155 (223)
Q Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 155 (223)
+....+.++|.+++|+|+.+|.. ...+..++..... .++|+++|+||+|+.+.... ..+...++....+.+++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 33446789999999999998654 4445555544322 26889999999999864220 123333444456888999
Q ss_pred EccCCCCCHHHHHHHH
Q 027417 156 TSALDSSNVTAAFQTV 171 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l 171 (223)
+||.++.|++++++.+
T Consensus 156 ~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 156 TSSKDQDSLADIIPHF 171 (307)
T ss_dssp CCHHHHTTCTTTGGGG
T ss_pred EecCCCCCHHHHHhhc
Confidence 9999888877666543
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.88 E-value=8.6e-07 Score=74.85 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=62.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--hhchh--------H
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--FRAVT--------S 81 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~--------~ 81 (223)
...+.|+++|.+||||||+.++|....... ...+.............+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999987542211 111111110000000011112335789888632 22222 4
Q ss_pred hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEE
Q 027417 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVG 126 (223)
Q Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~ 126 (223)
.++...++.++|+|.++. +.+....|+..+... ..+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 456667888999999987 566667777766554 23444443
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.84 E-value=1.9e-05 Score=63.39 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=51.9
Q ss_pred EEEEEeCCCchhhhch-hHh-----hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417 64 KAQIWDTAGQERFRAV-TSA-----YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 137 (223)
.+.++|++|....... ... ..-.+|-.++++|..... .+......+.... ...++++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence 3557999995432221 111 113578889999976653 2223333333221 23478899999632
Q ss_pred CHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417 138 TTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
..-.+.......+.|+..++ +|+++++
T Consensus 283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 23335566677789977766 5655543
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.79 E-value=6.6e-05 Score=60.88 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=56.6
Q ss_pred hhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCeEEEEccCC
Q 027417 83 YYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 83 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
...++|.+++|.+. +|. +...+..++...... ++|+++|+||+|+.+.... ..++........+.+++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 35789999988765 454 344555555443222 5788999999999853210 01122233345688899999999
Q ss_pred CCCHHHHHHHH
Q 027417 161 SSNVTAAFQTV 171 (223)
Q Consensus 161 ~~~i~~~~~~l 171 (223)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999887654
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.55 E-value=7.7e-05 Score=62.25 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
..+..-|.|+|++++|||+|+|.|++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 44567789999999999999999986
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.46 E-value=7.2e-05 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.694 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.+++|+|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.43 E-value=8.6e-05 Score=60.21 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEF 39 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~ 39 (223)
.++|+|++|||||||++.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998543
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.43 E-value=0.0011 Score=55.25 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=45.4
Q ss_pred EEEEEEEeCCCchhhhc-hhH-----hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCC
Q 027417 62 EVKAQIWDTAGQERFRA-VTS-----AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDA 134 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~ 134 (223)
.+.+.|+||||...... +.. .....++.+++|+|....... ......+.. ..+ .-+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 35678999999544321 111 123478999999998754321 122222222 233 3478999997532
Q ss_pred cccCHHHHHHHHHHcCCeE
Q 027417 135 REVTTAEGKALAEAQGLFF 153 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (223)
. ..+..+....+.|+
T Consensus 256 --~--g~~l~i~~~~~~Pi 270 (433)
T 2xxa_A 256 --G--GAALSIRHITGKPI 270 (433)
T ss_dssp --C--THHHHHHHHHCCCE
T ss_pred --H--HHHHHHHHHHCCCe
Confidence 1 23345555667663
No 239
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.39 E-value=0.00029 Score=55.91 Aligned_cols=23 Identities=48% Similarity=0.797 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-.++|+|++|||||||++.|. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999998 53
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.37 E-value=3.7e-05 Score=61.10 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-.++|+|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998753
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.35 E-value=0.00011 Score=53.75 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.31 E-value=0.00013 Score=54.24 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
-.++|+|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999876
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.21 E-value=0.00018 Score=53.28 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.21 E-value=0.00018 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999874
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.20 E-value=0.00019 Score=52.68 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.17 E-value=0.00021 Score=53.35 Aligned_cols=23 Identities=43% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998743
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.15 E-value=0.00022 Score=53.82 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~ 38 (223)
--++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999998743
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.14 E-value=0.0002 Score=51.78 Aligned_cols=20 Identities=45% Similarity=0.579 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027417 16 KVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~ 35 (223)
-++|+|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 46899999999999999644
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.13 E-value=0.00024 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|++|||||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998874
No 250
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.11 E-value=0.00035 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|++||||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.11 E-value=0.00027 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
--|+|+|++|||||||++.|.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45789999999999999999864
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.10 E-value=0.00027 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|.+||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.08 E-value=0.00033 Score=52.26 Aligned_cols=26 Identities=31% Similarity=0.220 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
+....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999988764
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.06 E-value=0.00031 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-|+|+|++|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999875
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.05 E-value=0.00034 Score=50.05 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999998754
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.05 E-value=0.00035 Score=51.37 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.05 E-value=0.00031 Score=53.64 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988874
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.01 E-value=0.00038 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988763
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.99 E-value=0.00039 Score=51.49 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~~ 38 (223)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999988753
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.98 E-value=0.00041 Score=50.79 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.97 E-value=0.00046 Score=49.44 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 027417 15 FKVVLIGDSAVGKSNLLARF 34 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l 34 (223)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 262
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.97 E-value=0.00042 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998753
No 263
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.97 E-value=0.00038 Score=52.75 Aligned_cols=22 Identities=41% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999988874
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.96 E-value=0.00046 Score=52.88 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 265
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.94 E-value=0.00046 Score=51.10 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
-.|+|+|++|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 266
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.94 E-value=0.012 Score=43.71 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=55.4
Q ss_pred EEEEEEEeCCCc-hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 027417 62 EVKAQIWDTAGQ-ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA 140 (223)
Q Consensus 62 ~~~~~l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 140 (223)
.+.+.++|+|+. .. ......+..+|.+|++...+ ..++..+...++.+.... +.++.+|.|+.|.... . ...
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~-~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-K-DGD 139 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-C-HHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-h-HHH
Confidence 356779999975 32 23445667899999888875 455666666666665533 4568899999986531 1 134
Q ss_pred HHHHHHHHcCCeEE
Q 027417 141 EGKALAEAQGLFFM 154 (223)
Q Consensus 141 ~~~~~~~~~~~~~~ 154 (223)
+..+..+..+.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 45555555676654
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.93 E-value=0.00061 Score=49.21 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.92 E-value=0.00055 Score=49.06 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.92 E-value=0.00055 Score=52.41 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027417 15 FKVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~ 35 (223)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999988
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.92 E-value=0.00049 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998874
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.91 E-value=0.00049 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|+.|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999988874
No 272
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.91 E-value=0.00049 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999988874
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.90 E-value=0.0005 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988874
No 274
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.88 E-value=0.00059 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.441 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 275
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.00046 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.++|+|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.87 E-value=0.00054 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 277
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.86 E-value=0.00055 Score=53.28 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999998874
No 278
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.86 E-value=0.00062 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.85 E-value=0.00059 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988874
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.85 E-value=0.00066 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
...|+|+|+.|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988763
No 281
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.85 E-value=0.00057 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999988764
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.85 E-value=0.00058 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988874
No 283
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.85 E-value=0.00078 Score=49.81 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=22.6
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
........|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3345557899999999999999998864
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.85 E-value=0.00065 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998874
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.84 E-value=0.00059 Score=52.98 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4689999999999999988874
No 286
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.83 E-value=0.00061 Score=52.16 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988874
No 287
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.83 E-value=0.00063 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.83 E-value=0.00062 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998763
No 289
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.82 E-value=0.00067 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998875
No 290
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.82 E-value=0.0019 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|.|++|+|||++++.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999997765
No 291
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.81 E-value=0.00068 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999884
No 292
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.81 E-value=0.00078 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
+.|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 293
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.81 E-value=0.00066 Score=52.27 Aligned_cols=22 Identities=45% Similarity=0.603 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988874
No 294
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.81 E-value=0.00076 Score=49.87 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.80 E-value=0.00071 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999988863
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.80 E-value=0.0005 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.79 E-value=0.00067 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998874
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.79 E-value=0.00074 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999884
No 299
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.78 E-value=0.00077 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999998876
No 300
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.77 E-value=0.00083 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEF 39 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~ 39 (223)
.++++|++|||||||++.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 301
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.77 E-value=0.00084 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 302
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.77 E-value=0.00071 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988874
No 303
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.77 E-value=0.00073 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988874
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.76 E-value=0.00085 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.76 E-value=0.00079 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
...|+|+|++|||||||++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988763
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.00092 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
.|+|.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 307
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.75 E-value=0.00076 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988874
No 308
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.74 E-value=0.001 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.74 E-value=0.00079 Score=53.63 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.....-|+|+|++|||||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 344567899999999999999988774
No 310
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.73 E-value=0.00077 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 311
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.73 E-value=0.00079 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988874
No 312
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.72 E-value=0.001 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 313
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.71 E-value=0.0009 Score=51.00 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027417 16 KVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~ 35 (223)
-++|+|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 314
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.70 E-value=0.00098 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-++|+|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999864
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.69 E-value=0.0013 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 316
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.69 E-value=0.0011 Score=48.81 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
......|+|+|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344578999999999999999988764
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.69 E-value=0.0011 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.69 E-value=0.00055 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cC
Q 027417 16 KVVLIGDSAVGKSNLLARFA-RD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~-~~ 37 (223)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57999999999999999998 64
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.69 E-value=0.0012 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 320
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.69 E-value=0.00099 Score=49.82 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 321
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.68 E-value=0.0012 Score=50.44 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=21.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...++|+|+|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 322
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.66 E-value=0.0011 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.66 E-value=0.0012 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.0011 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.++|+|+.|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988753
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.66 E-value=0.0014 Score=48.58 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=22.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
......|+|+|++|||||||++.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344567999999999999999988764
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.65 E-value=0.0013 Score=47.98 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
....|+|+|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988653
No 327
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.62 E-value=0.0011 Score=51.86 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 027417 17 VVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~ 36 (223)
++|+|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999987
No 328
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.62 E-value=0.00073 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.++|+|++|+|||+|++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998874
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.0014 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998764
No 330
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.60 E-value=0.0015 Score=48.44 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 331
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.60 E-value=0.0014 Score=49.65 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=21.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
......|+|+|.+||||||+.+.|..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998864
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.59 E-value=0.0011 Score=47.78 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.59 E-value=0.0018 Score=47.78 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=21.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.....|+|.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998864
No 334
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.58 E-value=0.0011 Score=53.67 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998843
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.57 E-value=0.0014 Score=46.73 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 336
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.57 E-value=0.001 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999998874
No 337
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.56 E-value=0.0015 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
....-|+|.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999864
No 338
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.56 E-value=0.0013 Score=50.49 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
++|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998863
No 339
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.55 E-value=0.00063 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.|+|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988863
No 340
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.55 E-value=0.0013 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999888743
No 341
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.54 E-value=0.0012 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988874
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.54 E-value=0.0012 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.|+|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999998763
No 343
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.54 E-value=0.00086 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5799999999999999988763
No 344
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.53 E-value=0.0013 Score=53.18 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999988753
No 345
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.52 E-value=0.0015 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998863
No 346
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.51 E-value=0.0014 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3689999999999999998874
No 347
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.51 E-value=0.0017 Score=48.99 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
+.|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 348
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.50 E-value=0.0018 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998876
No 349
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.50 E-value=0.0015 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999988753
No 350
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.50 E-value=0.002 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
....+-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998865
No 351
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.49 E-value=0.0015 Score=53.38 Aligned_cols=23 Identities=48% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999998743
No 352
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0084 Score=48.12 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 027417 17 VVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~ 36 (223)
++|.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 353
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.48 E-value=0.0018 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.0024 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
....|+|+|.+||||||+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999998865
No 355
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.47 E-value=0.0016 Score=47.15 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.46 E-value=0.0019 Score=47.68 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
...|+|.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999988764
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.46 E-value=0.0015 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.46 E-value=0.0016 Score=53.06 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|+.|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3689999999999999998874
No 359
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.46 E-value=0.0016 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999988753
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.44 E-value=0.0019 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 361
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.44 E-value=0.0016 Score=50.04 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
......|+|+|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998865
No 362
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.43 E-value=0.0023 Score=50.41 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=22.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
......|+|+|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999987765
No 363
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.43 E-value=0.0017 Score=49.99 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.43 E-value=0.0016 Score=52.30 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|++|||||||++.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998874
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.41 E-value=0.0019 Score=48.63 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 027417 17 VVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~ 36 (223)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988864
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.41 E-value=0.0017 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-.|+|+|+.||||||+++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999998875
No 367
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.40 E-value=0.012 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
...|+|.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 356999999999999999998653
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.39 E-value=0.0019 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998854
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.39 E-value=0.0021 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.39 E-value=0.002 Score=46.95 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 371
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.39 E-value=0.0019 Score=52.73 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.|+|+|++|||||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998863
No 372
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.39 E-value=0.0019 Score=50.37 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
|+|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999863
No 373
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.38 E-value=0.0017 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.++|+|+.|||||||++.|.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999874
No 374
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0023 Score=47.34 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...-|+|+|++|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998875
No 375
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.37 E-value=0.0022 Score=47.08 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 376
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.36 E-value=0.0019 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.++|+|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999988763
No 377
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.35 E-value=0.0025 Score=50.56 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
...-|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988873
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.35 E-value=0.002 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
--++|+|+.||||||+++.|.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998865
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.34 E-value=0.0022 Score=45.95 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.34 E-value=0.0023 Score=46.16 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..+.|+|.+|||||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998876
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.33 E-value=0.0029 Score=46.02 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 382
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.33 E-value=0.0013 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 36899999999999999988743
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.32 E-value=0.0025 Score=46.68 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 384
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.32 E-value=0.0022 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988853
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.31 E-value=0.0022 Score=46.49 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999865
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.31 E-value=0.00083 Score=50.02 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998865
No 387
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.30 E-value=0.0021 Score=53.28 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.|+|+|+.|||||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 388
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.28 E-value=0.0021 Score=52.70 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999998874
No 389
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.28 E-value=0.0027 Score=48.81 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027417 15 FKVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~ 35 (223)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 390
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.28 E-value=0.0027 Score=49.05 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 391
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.28 E-value=0.0024 Score=46.34 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998764
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.26 E-value=0.0019 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
....-|+|.|+.|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567899999999999999988764
No 393
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.25 E-value=0.0029 Score=45.18 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998754
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.25 E-value=0.0027 Score=45.93 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|.+||||||+++.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998876
No 395
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.24 E-value=0.0025 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|+|++|+|||+|++++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999999999876
No 396
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.23 E-value=0.011 Score=49.18 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=52.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhc------------------CCCCC---CCCccceeEeEEEEE--EE-CCEEEEEE
Q 027417 11 EDYLFKVVLIGDSAVGKSNLLARFAR------------------DEFYP---NSKSTIGVEFQTQKM--DI-NGKEVKAQ 66 (223)
Q Consensus 11 ~~~~~~i~i~G~~~sGKStli~~l~~------------------~~~~~---~~~~~~~~~~~~~~~--~~-~~~~~~~~ 66 (223)
..+..-|.|+|+.++|||+|+|.|+. ..|.. ....|.|+-.-...+ .. ++..+.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 45667778999999999999996641 11211 111233332221111 11 55678899
Q ss_pred EEeCCCchhhhch-------hHhhhcCCCEEEEEEEC-CCHhhHHHHHH
Q 027417 67 IWDTAGQERFRAV-------TSAYYRGAVGALLVYDI-SRRQTFDSIGR 107 (223)
Q Consensus 67 l~D~~G~~~~~~~-------~~~~~~~~d~~i~v~d~-~~~~s~~~~~~ 107 (223)
++||.|....... .....--++.+|+-..- -+...++.+..
T Consensus 144 llDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L~~ 192 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQL 192 (457)
T ss_dssp EEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHHHH
T ss_pred EEeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHHHH
Confidence 9999994332211 11111235666554433 34455666543
No 397
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.23 E-value=0.0021 Score=46.29 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988653
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.22 E-value=0.003 Score=48.45 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 399
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.21 E-value=0.003 Score=46.54 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
..++|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988763
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.21 E-value=0.0034 Score=46.92 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998865
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.20 E-value=0.0024 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.++|+|++|||||||++.+.+..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998743
No 402
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.20 E-value=0.0018 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=15.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
No 403
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.18 E-value=0.0013 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999988743
No 404
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.16 E-value=0.0032 Score=47.39 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.16 E-value=0.0027 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.11 E-value=0.0036 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
..+.|+|.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998864
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.10 E-value=0.0033 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-++|+|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 408
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.10 E-value=0.0033 Score=47.55 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-++|+|++|+|||||+..+.+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998873
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.09 E-value=0.0034 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|+|.+||||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 410
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.09 E-value=0.004 Score=47.28 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=21.6
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 9 RAEDYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 9 ~~~~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
........|+|+|.+||||||+.+.|..
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444557899999999999999998864
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0029 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.++|+|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999998774
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.08 E-value=0.0033 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.--|+|+|+.||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34688999999999999998865
No 413
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.06 E-value=0.0041 Score=43.82 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 027417 17 VVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~ 35 (223)
.+|+|+.|+|||||++++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999999875
No 414
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.05 E-value=0.004 Score=43.51 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
....|+|.|++|+|||++.+.+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988764
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.03 E-value=0.0038 Score=47.33 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
...-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988763
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.03 E-value=0.0034 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.01 E-value=0.0036 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.760 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
--|+|+|+.|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4688999999999999998865
No 418
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.98 E-value=0.0045 Score=48.42 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~ 35 (223)
..+.|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999886
No 419
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.98 E-value=0.0029 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-++|+|..|||||||++.|.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35689999999999999999975
No 420
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.96 E-value=0.0041 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
+++|+|+.|+|||||++.+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999885
No 421
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0062 Score=45.95 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=20.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
...+-|+.-|+++.||++|++++.+.
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CCceEEEecCcccccHHHHHHHHhcc
Confidence 33455555599999999999999986
No 422
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.93 E-value=0.0041 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
-.++|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998886
No 423
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.92 E-value=0.0045 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 424
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.89 E-value=0.0043 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-.|+|.|++|+|||+|++++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 425
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.87 E-value=0.12 Score=40.89 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 027417 17 VVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~ 36 (223)
+++.|++|+|||++++++..
T Consensus 51 ~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHH
Confidence 45556699999999999875
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.86 E-value=0.0046 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
....++|.|++|+|||+|++++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999998763
No 427
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.86 E-value=0.0058 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|.|++|+|||+|++++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998876
No 428
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.85 E-value=0.0046 Score=52.05 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 568999999999999998876
No 429
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.84 E-value=0.0038 Score=46.45 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888765
No 430
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.84 E-value=0.0053 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
..-+++.|+||+|||+|++++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45678889999999999998875
No 431
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.83 E-value=0.0051 Score=46.06 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 432
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.82 E-value=0.0052 Score=45.40 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
.++|.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998875
No 433
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.82 E-value=0.0071 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.++|+|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999988753
No 434
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.80 E-value=0.0065 Score=47.82 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=20.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.....++|.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999986654
No 435
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.80 E-value=0.005 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-.|+|.|++|+|||+|++++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34689999999999999999886
No 436
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.75 E-value=0.0069 Score=44.59 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.....|+|.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 437
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.74 E-value=0.0054 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.++|.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988763
No 438
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.71 E-value=0.0055 Score=47.71 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.71 E-value=0.0072 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
-++|+|+.|||||||++.|.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999988753
No 440
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.69 E-value=0.0056 Score=52.92 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999988874
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.68 E-value=0.0061 Score=50.81 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
+++|+|+.|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998874
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.0079 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.++|+|+.|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57999999999999999988753
No 443
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.65 E-value=0.0091 Score=46.19 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.....++|.|++|+|||+|++++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44568999999999999999988763
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.64 E-value=0.007 Score=44.77 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 445
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.59 E-value=0.0071 Score=49.17 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027417 15 FKVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~ 35 (223)
+ .+|+|+.|||||||+++++
T Consensus 25 ~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 I-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp E-EEEECCTTSSHHHHHHHHH
T ss_pred e-EEEECCCCCCHHHHHHHHH
Confidence 5 4599999999999999886
No 446
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.59 E-value=0.0069 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
..-|+|+|.+||||||+.+.|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999875
No 447
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.58 E-value=0.01 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.++|+|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988763
No 448
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.58 E-value=0.0089 Score=51.69 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999988874
No 449
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.54 E-value=0.0091 Score=45.22 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
..+++.|+|+|||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999998854
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.51 E-value=0.01 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.++|+|+.|+|||||++.|.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999988753
No 451
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.50 E-value=0.0079 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...++|.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 452
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.49 E-value=0.0092 Score=43.94 Aligned_cols=21 Identities=43% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
.|.|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 453
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.48 E-value=0.0075 Score=51.64 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.++|+|+.|||||||++.|.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 454
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.44 E-value=0.0058 Score=52.99 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988874
No 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.42 E-value=0.0092 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.++|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998853
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.41 E-value=0.0085 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~ 38 (223)
.++|+|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 457
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.0084 Score=47.83 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-.|+|.|+||+|||+|++++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998863
No 458
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.41 E-value=0.008 Score=48.55 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998876
No 459
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.41 E-value=0.0082 Score=47.35 Aligned_cols=85 Identities=11% Similarity=0.096 Sum_probs=48.5
Q ss_pred EEEEEEeCCCchhhhch-h---Hhhhc--CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417 63 VKAQIWDTAGQERFRAV-T---SAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (223)
+.+.|+||+|....... . ...+. ..+.+++|+|.+.. .+.+..+...+.. . ...-+|.||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l-~~~giVltk~D~~~--- 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---V-PVNQYIFTKIDETT--- 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---S-CCCEEEEECTTTCS---
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---C-CCCEEEEeCCCccc---
Confidence 46789999996543221 1 12222 36778899987753 2334443333221 1 12356679999653
Q ss_pred cCHHHHHHHHHHcCCeEEEEc
Q 027417 137 VTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~S 157 (223)
....+...+...+.|+..++
T Consensus 254 -~~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 -SLGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp -CCHHHHHHHHTCSCCCSEEC
T ss_pred -chhHHHHHHHHHCcCEEEEE
Confidence 23356667778888865543
No 460
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0085 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.--|++.|+||+|||+|++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999999886
No 461
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.40 E-value=0.0097 Score=47.17 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...++|.|++|+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 462
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.39 E-value=0.009 Score=45.19 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999776654
No 463
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.39 E-value=0.0065 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988763
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.38 E-value=0.0056 Score=52.90 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6789999999999999977763
No 465
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.36 E-value=0.0085 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-+.|+|++|+|||||+..+.+.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998874
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.35 E-value=0.009 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 467
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.34 E-value=0.0093 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988764
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.34 E-value=0.0098 Score=47.13 Aligned_cols=86 Identities=19% Similarity=0.114 Sum_probs=47.9
Q ss_pred EEEEEEeCCCchhhhc-hh------Hhhh-----cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417 63 VKAQIWDTAGQERFRA-VT------SAYY-----RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 130 (223)
+.+.++||||...... +. ...+ ..++.+++|+|.... .+.+.. ...+.... ...-+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCEEEEeCCC
Confidence 3577999999532211 11 1111 247889999998743 222221 22222221 23456789999
Q ss_pred CCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417 131 LKDAREVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
... ..-.+..+....+.|+..+..
T Consensus 261 ~~~----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence 642 233467777888998766644
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.33 E-value=0.0076 Score=46.47 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 12 DYLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 12 ~~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.....|+|.|.+||||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998765
No 470
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.32 E-value=0.013 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
..+|+|+|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999987654
No 471
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.32 E-value=0.011 Score=43.84 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 027417 17 VVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~ 35 (223)
.+|+|+.|+|||||++++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3789999999999999874
No 472
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.30 E-value=0.011 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|.|+||+|||+|++++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999876
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.29 E-value=0.0074 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|+|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999987763
No 474
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.01 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
..--|++.||||+|||+|++++.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999986
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.01 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027417 17 VVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~ 38 (223)
++|+|+.|+|||||++.+.+..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998754
No 476
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.012 Score=48.87 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
..--|++.||||+|||+|++++.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 346799999999999999999986
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.25 E-value=0.011 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.24 E-value=0.0047 Score=47.62 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027417 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~ 36 (223)
.|+|.|++|+|||+|++++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998875
No 479
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.22 E-value=0.0015 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027417 17 VVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~~ 38 (223)
++|+|+.|||||||++.+.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999999988743
No 480
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.18 E-value=0.011 Score=47.29 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
.++|.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988753
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.18 E-value=0.012 Score=47.30 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988764
No 482
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.012 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.--|++.||||+|||.|++++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 45699999999999999999986
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.09 E-value=0.015 Score=41.98 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.=|+|.|++|+||||+...|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35899999999999999988874
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.09 E-value=0.011 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.++|.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 485
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.08 E-value=0.011 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
..-.++|.|++|+|||+|++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998875
No 486
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.08 E-value=0.012 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-.++|.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 487
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.07 E-value=0.012 Score=49.88 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-|+|+|++|+|||+|++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998863
No 488
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.06 E-value=0.013 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
...|+|.|++|+|||+|++.+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 357999999999999999998764
No 489
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.05 E-value=0.013 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
-.|+|.|++|+|||+|++++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988763
No 490
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.04 E-value=0.012 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-+++|+|+||+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999987653
No 491
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.00 E-value=0.013 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
-.++|+|++|+|||||++.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 492
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.99 E-value=0.015 Score=42.25 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027417 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 i~i~G~~~sGKStli~~l~~~ 37 (223)
++|+|.++||||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998854
No 493
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.99 E-value=0.014 Score=49.22 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 027417 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~ 36 (223)
.-|+|+|++|+|||+|++++.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999886
No 494
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.98 E-value=0.016 Score=46.52 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027417 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~ 37 (223)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 495
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.97 E-value=0.016 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027417 16 KVVLIGDSAVGKSNLLARFARDEF 39 (223)
Q Consensus 16 ~i~i~G~~~sGKStli~~l~~~~~ 39 (223)
.++|+|+.|+|||||++.|.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999987654
No 496
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.96 E-value=0.017 Score=43.77 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
..|+|.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999988753
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.95 E-value=0.014 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~ 36 (223)
....|+|.|++|+|||+|++++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 498
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.93 E-value=0.016 Score=46.03 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 027417 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~i~i~G~~~sGKStli~~l~~~ 37 (223)
.-|+|+|++|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999988653
No 499
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.88 E-value=0.015 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 027417 14 LFKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 14 ~~~i~i~G~~~sGKStli~~l~~ 36 (223)
...|+|.|++|+|||++++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 500
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.86 E-value=0.016 Score=46.91 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417 13 YLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 13 ~~~~i~i~G~~~sGKStli~~l~~~ 37 (223)
....|+|.|+||+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988753
Done!