Query 027418
Match_columns 223
No_of_seqs 110 out of 1088
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:39:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 6.4E-51 1.4E-55 335.9 27.4 212 8-223 1-212 (212)
2 KOG0179 20S proteasome, regula 100.0 4.7E-48 1E-52 305.7 22.7 221 1-223 15-235 (235)
3 cd03759 proteasome_beta_type_3 100.0 7.4E-47 1.6E-51 308.0 26.6 192 14-218 2-194 (195)
4 cd03758 proteasome_beta_type_2 100.0 2.5E-45 5.4E-50 298.5 25.7 191 15-218 1-193 (193)
5 cd03761 proteasome_beta_type_5 100.0 3.7E-45 8.1E-50 296.3 25.9 187 16-216 1-187 (188)
6 cd03760 proteasome_beta_type_4 100.0 5.6E-45 1.2E-49 297.3 25.3 189 15-216 2-195 (197)
7 COG0638 PRE1 20S proteasome, a 100.0 4.8E-45 1E-49 305.0 23.9 193 10-216 25-220 (236)
8 TIGR03634 arc_protsome_B prote 100.0 2.2E-44 4.7E-49 291.0 25.4 185 15-213 1-185 (185)
9 cd03764 proteasome_beta_archea 100.0 6.6E-44 1.4E-48 288.9 25.6 187 16-216 1-187 (188)
10 cd03762 proteasome_beta_type_6 100.0 2.2E-43 4.8E-48 285.8 26.0 187 16-216 1-187 (188)
11 cd01912 proteasome_beta protea 100.0 2.9E-43 6.3E-48 285.1 26.2 188 16-216 1-188 (189)
12 PTZ00488 Proteasome subunit be 100.0 6.9E-43 1.5E-47 293.6 25.7 192 10-216 35-226 (247)
13 cd03763 proteasome_beta_type_7 100.0 1.3E-42 2.7E-47 281.7 25.7 187 16-217 1-187 (189)
14 TIGR03690 20S_bact_beta protea 100.0 1.1E-41 2.4E-46 282.1 25.3 189 14-215 1-201 (219)
15 cd03765 proteasome_beta_bacter 100.0 3.3E-41 7.1E-46 281.0 25.6 185 16-215 1-204 (236)
16 cd03750 proteasome_alpha_type_ 100.0 1.7E-41 3.8E-46 282.4 23.7 189 11-215 23-216 (227)
17 PF00227 Proteasome: Proteasom 100.0 2.3E-41 4.9E-46 273.7 23.3 184 12-208 1-190 (190)
18 cd03752 proteasome_alpha_type_ 100.0 1.9E-41 4.2E-46 279.7 23.0 185 11-208 25-213 (213)
19 TIGR03633 arc_protsome_A prote 100.0 4.2E-41 9.1E-46 279.6 23.8 193 11-219 25-221 (224)
20 PTZ00246 proteasome subunit al 100.0 3.7E-41 7.9E-46 284.7 23.5 189 11-212 27-219 (253)
21 cd03755 proteasome_alpha_type_ 100.0 7E-41 1.5E-45 275.2 22.5 181 11-208 23-207 (207)
22 cd03749 proteasome_alpha_type_ 100.0 1.2E-40 2.5E-45 274.6 23.3 184 11-209 23-211 (211)
23 cd01906 proteasome_protease_Hs 100.0 2.7E-40 5.9E-45 265.7 23.8 180 16-208 1-182 (182)
24 cd03754 proteasome_alpha_type_ 100.0 1.2E-40 2.6E-45 275.3 21.4 186 10-208 24-215 (215)
25 PRK03996 proteasome subunit al 100.0 2.2E-40 4.8E-45 278.1 23.3 192 11-218 32-227 (241)
26 cd03756 proteasome_alpha_arche 100.0 2.6E-40 5.7E-45 272.5 22.8 183 11-209 24-210 (211)
27 cd03751 proteasome_alpha_type_ 100.0 2.1E-40 4.6E-45 273.1 22.2 183 11-208 26-212 (212)
28 cd01911 proteasome_alpha prote 100.0 2.3E-40 4.9E-45 272.5 21.9 183 11-208 23-209 (209)
29 KOG0180 20S proteasome, regula 100.0 1E-40 2.2E-45 256.8 18.2 202 9-223 2-204 (204)
30 cd03753 proteasome_alpha_type_ 100.0 2.3E-39 4.9E-44 267.3 22.6 182 11-208 23-213 (213)
31 KOG0176 20S proteasome, regula 100.0 1.3E-38 2.9E-43 250.0 16.8 187 11-213 30-225 (241)
32 TIGR03691 20S_bact_alpha prote 100.0 1.3E-37 2.7E-42 258.9 22.9 181 11-212 23-211 (228)
33 KOG0185 20S proteasome, regula 100.0 9.3E-37 2E-41 245.2 16.3 204 3-217 30-236 (256)
34 KOG0174 20S proteasome, regula 100.0 3.7E-36 8E-41 235.6 17.1 197 11-221 15-211 (224)
35 KOG0177 20S proteasome, regula 100.0 8.7E-36 1.9E-40 232.7 18.3 190 15-217 1-192 (200)
36 KOG0173 20S proteasome, regula 100.0 2.2E-35 4.7E-40 239.5 18.0 196 6-216 28-223 (271)
37 KOG0175 20S proteasome, regula 100.0 2E-35 4.3E-40 240.3 17.3 191 12-216 68-258 (285)
38 KOG0178 20S proteasome, regula 100.0 7.1E-35 1.5E-39 231.0 17.1 193 11-215 27-223 (249)
39 KOG0181 20S proteasome, regula 100.0 1.8E-34 4E-39 226.2 14.4 189 11-215 28-220 (233)
40 KOG0184 20S proteasome, regula 100.0 4.3E-34 9.3E-39 228.2 16.4 187 10-211 29-219 (254)
41 KOG0183 20S proteasome, regula 100.0 4.9E-34 1.1E-38 226.8 14.6 190 11-215 26-220 (249)
42 KOG0863 20S proteasome, regula 100.0 6.9E-33 1.5E-37 222.4 16.2 188 11-213 28-220 (264)
43 PRK05456 ATP-dependent proteas 100.0 3.7E-32 8E-37 216.5 19.8 167 15-207 1-171 (172)
44 cd01913 protease_HslV Protease 100.0 2.2E-31 4.8E-36 210.8 20.3 165 16-207 1-170 (171)
45 TIGR03692 ATP_dep_HslV ATP-dep 100.0 3E-31 6.4E-36 210.1 19.5 166 16-207 1-170 (171)
46 KOG0182 20S proteasome, regula 100.0 2E-30 4.4E-35 205.9 18.8 199 8-219 29-231 (246)
47 cd01901 Ntn_hydrolase The Ntn 100.0 3.1E-28 6.8E-33 190.1 21.7 161 16-190 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.8 1.2E-19 2.6E-24 139.2 10.4 173 13-210 2-177 (178)
49 COG3484 Predicted proteasome-t 99.6 2.2E-14 4.8E-19 114.1 13.1 187 15-216 1-206 (255)
50 PF09894 DUF2121: Uncharacteri 97.3 0.036 7.8E-07 44.6 16.0 156 15-211 1-180 (194)
51 COG4079 Uncharacterized protei 96.2 0.38 8.2E-06 40.2 14.5 157 15-211 1-181 (293)
52 KOG3361 Iron binding protein i 76.0 3.4 7.4E-05 31.4 3.2 43 129-184 72-114 (157)
53 PF03928 DUF336: Domain of unk 57.7 20 0.00044 26.9 4.3 37 175-215 2-38 (132)
54 COG3193 GlcG Uncharacterized p 55.1 36 0.00078 26.2 5.2 37 174-214 6-42 (141)
55 PRK09732 hypothetical protein; 49.7 78 0.0017 24.1 6.3 39 174-216 5-43 (134)
56 TIGR02261 benz_CoA_red_D benzo 35.7 69 0.0015 27.3 4.5 41 113-158 101-144 (262)
57 COG4245 TerY Uncharacterized p 35.0 75 0.0016 25.9 4.4 40 180-219 22-61 (207)
58 PRK02487 hypothetical protein; 31.3 1.9E+02 0.0041 22.5 6.1 34 174-212 21-54 (163)
59 PF04539 Sigma70_r3: Sigma-70 31.0 89 0.0019 20.6 3.8 29 71-99 3-31 (78)
60 TIGR03192 benz_CoA_bzdQ benzoy 30.2 1E+02 0.0022 26.8 4.7 43 111-158 127-172 (293)
61 PF11211 DUF2997: Protein of u 26.9 81 0.0018 19.5 2.6 33 128-160 3-35 (48)
62 TIGR02259 benz_CoA_red_A benzo 24.5 1.3E+02 0.0027 27.6 4.4 41 113-158 271-314 (432)
63 COG1754 Uncharacterized C-term 23.2 89 0.0019 27.0 3.0 63 117-194 78-142 (298)
64 PF07499 RuvA_C: RuvA, C-termi 21.4 59 0.0013 19.7 1.3 32 144-187 13-44 (47)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.4e-51 Score=335.91 Aligned_cols=212 Identities=62% Similarity=0.956 Sum_probs=200.0
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCC
Q 027418 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
|+|++++|+|+|||+++||||||+|++.++|.++..++.+||++|++++++++||..+|++.+.++++.+++.|+..+++
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK 80 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 78999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 88 ~~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+++++.+++++++.+|.+|.+||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+.++|..
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~- 159 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN- 159 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc-
Confidence 9999999999999999988889999999999998888999999999999999999999999999999999985321110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~~~~ 223 (223)
.|.++||++||++++.+||+.+.+||..++++++|++|+++|+++..+++|||
T Consensus 160 ---~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~ 212 (212)
T cd03757 160 ---VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD 212 (212)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence 13489999999999999999999999999999999999999999999999998
No 2
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-48 Score=305.67 Aligned_cols=221 Identities=57% Similarity=0.899 Sum_probs=213.8
Q ss_pred CCCCCCCcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHH
Q 027418 1 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLI 80 (223)
Q Consensus 1 ~~~~~~~~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 80 (223)
++|.|+.|+|++.+|+|+|||++.|+.|+|+|+|.++|..+.+++.+|||.++|+++++.+|+.+|+..|...++.....
T Consensus 15 ~~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~ 94 (235)
T KOG0179|consen 15 KTMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQ 94 (235)
T ss_pred CccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccC
Q 027418 81 YQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 160 (223)
Q Consensus 81 ~~~~~~~~~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~ 160 (223)
|+..+++.|++..+|++++..+|.+|++||.+..+|||+|++|++.+|.+||.|++.+..+.|.|+++..++++|+.++.
T Consensus 95 Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~ 174 (235)
T KOG0179|consen 95 YEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIG 174 (235)
T ss_pred HhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027418 161 SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 161 ~~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~~~~ 223 (223)
.+|++.+.+++ +.||+++|+.++..+|..|.+||..+|.+++|+|++++|+..+.+++|+|
T Consensus 175 ~kn~~~e~~~~--~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 175 HKNQNLENAER--TPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred CcCcccccCcc--cccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence 98887644433 58999999999999999999999999999999999999999999999998
No 3
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-47 Score=307.97 Aligned_cols=192 Identities=26% Similarity=0.472 Sum_probs=184.3
Q ss_pred CCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 027418 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPA 93 (223)
Q Consensus 14 ~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (223)
+|+|+|||+++||||||+|++.+++..+..++.+|||+|++++++++||..+|++.+.++++.+++.|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999987777778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeC-eEEEcCchhhHHHHHhcccCCCCCCCCCCCCC
Q 027418 94 MGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 94 la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~ 172 (223)
+++++++.+|.+|.+||+|++||||||++++|+||.+||+|++.++. ++|+|+|++.++++||+.|+
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~------------ 149 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWR------------ 149 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccC------------
Confidence 99999999999888999999999999988889999999999998887 99999999999999999965
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEe
Q 027418 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYM 218 (223)
Q Consensus 173 ~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~ 218 (223)
++|+.+||++++.+||+.+.+||..++++++|++|+++|++++++
T Consensus 150 -~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 150 -PDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 699999999999999999999999999999999999999998876
No 4
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-45 Score=298.53 Aligned_cols=191 Identities=27% Similarity=0.402 Sum_probs=180.8
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
++|+|||+++||||||+|+|.+.|.++..++.+|||+|++++++++||..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 ~~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 80 (193)
T cd03758 1 METLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAA 80 (193)
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 48999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-c-CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCC
Q 027418 95 GQLLSNTLYYK-R-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 95 a~~i~~~~~~~-r-~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~ 172 (223)
++++++++|.+ | .|||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 81 a~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~------------ 148 (193)
T cd03758 81 ANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK------------ 148 (193)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccC------------
Confidence 99999999643 3 369999999999998777999999999999999999999999999999999965
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEe
Q 027418 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYM 218 (223)
Q Consensus 173 ~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~ 218 (223)
++||++||++++.+||+.+.+||..++++++|.+|+++|++..|+
T Consensus 149 -~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~~ 193 (193)
T cd03758 149 -PDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDLEL 193 (193)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeCCC
Confidence 699999999999999999999999999999999999999987653
No 5
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-45 Score=296.34 Aligned_cols=187 Identities=27% Similarity=0.344 Sum_probs=179.7
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++++|.+|..||+|++||||||++ +|+||.+||+|++.+++++++|+|+++++++||+.|+ ++
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~-g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------------~~ 146 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKT-GPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYR-------------YD 146 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCC-CCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCC-------------CC
Confidence 999999999998899999999999964 4999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
|+.+||++++.+||..+.+||..++++++|++|+++|++.+
T Consensus 147 ~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 147 LSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 99999999999999999999999999999999999999653
No 6
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.6e-45 Score=297.32 Aligned_cols=189 Identities=29% Similarity=0.394 Sum_probs=179.7
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHH-HHHHhcCCCCCHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHL-IYQHQHNKQMSCPA 93 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 93 (223)
|+|+|||+++||||||+|+|.+.+.++..++.+|||+|+++++++++|..+|++.+.++++.+++ .+.+.++.+++++.
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~ 81 (197)
T cd03760 2 GTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKE 81 (197)
T ss_pred CceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 89999999999999999999998889988999999999999999999999999999999999987 56678999999999
Q ss_pred HHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCC
Q 027418 94 MGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 94 la~~i~~~~~~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
+++++++.+|++| +|||+|++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 82 la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~----------- 150 (197)
T cd03760 82 IHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWE----------- 150 (197)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcC-----------
Confidence 9999999999876 899999999999998677999999999999999999999999999999999965
Q ss_pred CCC--CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 172 AVT--PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 172 ~~~--~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
+ +||++||++++.+||+.+.++|..++++++|++|+++|++..
T Consensus 151 --~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 195 (197)
T cd03760 151 --KKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE 195 (197)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence 6 999999999999999999999999999999999999998754
No 7
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-45 Score=305.02 Aligned_cols=193 Identities=33% Similarity=0.482 Sum_probs=182.6
Q ss_pred cccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027418 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
+....|+|+|||+++||||||+|+|.++|.++..++.+|||+|+|||+|++||+.+|++.+.++++.+++.|++.+++++
T Consensus 25 a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i 104 (236)
T COG0638 25 AVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPI 104 (236)
T ss_pred HHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455799999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcC--CCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 90 SCPAMGQLLSNTLYYKRF--FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 90 ~~~~la~~i~~~~~~~r~--~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+++.+++.+++++|.++. |||+|++|+||+|+ ++|+||.+||+|++.++++.|+|+|++.|+++||+.|+
T Consensus 105 ~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~------- 176 (236)
T COG0638 105 SVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYR------- 176 (236)
T ss_pred CHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhcc-------
Confidence 999999999999999886 99999999999998 77999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC-CCeEEE
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK-DGIHRE 216 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~-~g~~~~ 216 (223)
++|+++||++++++||..+.+||..++++++|++|++ +|.+..
T Consensus 177 ------~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~ 220 (236)
T COG0638 177 ------EDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKL 220 (236)
T ss_pred ------CCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEc
Confidence 6999999999999999999999998889999999999 566544
No 8
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.2e-44 Score=291.00 Aligned_cols=185 Identities=34% Similarity=0.550 Sum_probs=178.9
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+|+|||+++||||||+|+|.+.|.++..++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCC
Q 027418 95 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 174 (223)
Q Consensus 95 a~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~ 174 (223)
++++++.+|.+++|||+|++|+||+|+++ |+||.+||+|++.+++++++|+|+++++++||+.|+ +
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------------~ 146 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEG-PHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYR-------------E 146 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCC-CEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCC-------------C
Confidence 99999999998999999999999999765 999999999999999999999999999999999965 6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027418 175 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 213 (223)
Q Consensus 175 ~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~ 213 (223)
+||++||++++.+||+.+.++|..++++++|++|+++|+
T Consensus 147 ~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 147 DMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 999999999999999999999999999999999999985
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.6e-44 Score=288.92 Aligned_cols=187 Identities=34% Similarity=0.514 Sum_probs=179.8
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|+|.++|.++..++.+||++|+++++++++|..+|++.+.++++.+++.|.+.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999898889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++.+|.+++|||+|++|+||+|+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+ ++
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~-------------~~ 146 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYK-------------ED 146 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCC-------------CC
Confidence 99999999999999999999999997 56999999999999999999999999999999999965 69
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
|+++||++++.+||+.+.++|..++++++|++|+++|++..
T Consensus 147 ~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 147 MTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 99999999999999999999999999999999999997654
No 10
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-43 Score=285.82 Aligned_cols=187 Identities=26% Similarity=0.340 Sum_probs=178.6
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|+|.+.|.++..++.+||++|+++++++++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++++|.+| +||++++||||+|++.+|+||.+||+|++.+++++++|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~-------------~~ 146 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYK-------------PG 146 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCC-------------CC
Confidence 99999998876 68999999999998666999999999999999999999999999999999965 69
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
|+++||++++.+||+.+.+||..++++++|++|+++|++.+
T Consensus 147 ~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~~ 187 (188)
T cd03762 147 MTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVERK 187 (188)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEEe
Confidence 99999999999999999999999999999999999999754
No 11
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-43 Score=285.06 Aligned_cols=188 Identities=38% Similarity=0.594 Sum_probs=180.7
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|..+..++.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++.+|.++.+||++++||||+|++++|+||.+||+|++.+++++++|+++++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~-------------~~ 147 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYK-------------PD 147 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccC-------------CC
Confidence 99999999988799999999999998777999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
|+++||++++.+||+.+.++|..++++++|++|+++|++..
T Consensus 148 ~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 148 MTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 99999999999999999999999999999999999998753
No 12
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=6.9e-43 Score=293.61 Aligned_cols=192 Identities=25% Similarity=0.331 Sum_probs=181.7
Q ss_pred cccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027418 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
|+. +|+|+|||+++||||||+|+|.+.|.++..++.+||++|++++++++||+.+|++.+.++++.+++.|++++++++
T Consensus 35 ~~~-~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~i 113 (247)
T PTZ00488 35 EFA-HGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELI 113 (247)
T ss_pred ccC-CCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 444 5999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCC
Q 027418 90 SCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPA 169 (223)
Q Consensus 90 ~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~ 169 (223)
+++.+++.+++++|.+|..|+.+++|+||||+++ |+||.+||+|++.+++++++|+|+.+++++||+.|+
T Consensus 114 sv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k--------- 183 (247)
T PTZ00488 114 SVAAASKILANIVWNYKGMGLSMGTMICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFK--------- 183 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCc---------
Confidence 9999999999999999866788889999999766 999999999999999999999999999999999966
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 170 QDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 170 ~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
++|+.+||++++.+||+.+.+||..++++++|++|+++|++..
T Consensus 184 ----~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l 226 (247)
T PTZ00488 184 ----WDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKI 226 (247)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEEC
Confidence 6999999999999999999999999999999999999997543
No 13
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-42 Score=281.72 Aligned_cols=187 Identities=24% Similarity=0.342 Sum_probs=178.2
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++++++|..+|++.+.++++.+++.|+.+++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++.+|.++ .||+|++||||+|+++ |+||.+||+|++.+++++++|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~-------------~~ 145 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYK-------------PD 145 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcC-------------CC
Confidence 99999998764 4999999999999765 999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 217 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~ 217 (223)
||++||++++.+||+.+.++|..++++++|++|+++|++..+
T Consensus 146 ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~ 187 (189)
T cd03763 146 MTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLR 187 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEec
Confidence 999999999999999999999999999999999999998654
No 14
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.1e-41 Score=282.12 Aligned_cols=189 Identities=25% Similarity=0.363 Sum_probs=175.7
Q ss_pred CCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 027418 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPA 93 (223)
Q Consensus 14 ~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (223)
+|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---cCCCeeEEEEEEEEcCC-CCeEEEEEcCCCC-eeeeCeEEEcCchhhHHHHHhcccCCCCCCCCC
Q 027418 94 MGQLLSNTLYYK---RFFPYYSFNVLGGLDNE-GKGCVYTYDAVGS-YERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP 168 (223)
Q Consensus 94 la~~i~~~~~~~---r~~P~~v~~ilaG~d~~-~~~~ly~id~~G~-~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~ 168 (223)
+++.+++++|.. .+|||+|++||||||++ ++|+||.+||+|+ +..++++|+|+|+++++++||+.|+
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~-------- 152 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYS-------- 152 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCC--------
Confidence 999999999764 37999999999999974 6799999999995 7777899999999999999999865
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCc-------EEEEEEcCCCeEE
Q 027418 169 AQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK-------LEIVVLNKDGIHR 215 (223)
Q Consensus 169 ~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~-------iei~ii~~~g~~~ 215 (223)
++||.+||++++.+||..+.++|..+++. ++|++|+++|++.
T Consensus 153 -----~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~ 201 (219)
T TIGR03690 153 -----PDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARR 201 (219)
T ss_pred -----CCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEE
Confidence 69999999999999999999999866664 3999999999765
No 15
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-41 Score=280.96 Aligned_cols=185 Identities=17% Similarity=0.211 Sum_probs=169.8
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEec----CceEEEecCChHHHHHHHHHHHHHHHHHHHhcCC-CCC
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNK-QMS 90 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 90 (223)
|.+|||+++||||||+|+|.+.+... .++.+||++|+ ++++|+.||..+|++.+.+++|.+++.|++.+++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~-~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDN-ISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCcc-ccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 57899999999999999999887444 44789999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHhh----------cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeee----CeEEEcCchhhHHHHHh
Q 027418 91 CPAMGQLLSNTLYYK----------RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV----GYSSQGSGSTLIMPFLD 156 (223)
Q Consensus 91 ~~~la~~i~~~~~~~----------r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~----~~~aiG~g~~~a~~~Le 156 (223)
++.+++.+++.+++. +.|||+|++|+||||++.+|+||.+||+|++.++ +|+|+|+ +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 999999999986431 1479999999999997666999999999999998 6799996 699999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027418 157 NQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 215 (223)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~ 215 (223)
+.|+ ++||++||++++++||..+.++|..++++++|++|+++|++.
T Consensus 159 k~yk-------------~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 159 RVIT-------------PDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred HhcC-------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence 9976 699999999999999999999999999999999999999976
No 16
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-41 Score=282.44 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=174.8
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++.++++++
T Consensus 23 av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 101 (227)
T cd03750 23 AVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIP 101 (227)
T ss_pred HHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 457899999999999999999999984 5777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~--~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++. ++ .|||+|++||||||++ +|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 102 v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 174 (227)
T cd03750 102 VSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYN------ 174 (227)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhcc------
Confidence 99999999999943 44 7999999999999976 4999999999999999999999999999999999966
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEE
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD-GIHR 215 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~-g~~~ 215 (223)
++|+++||++++++||..+.+++. ++.+++|.+|+++ |.+.
T Consensus 175 -------~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~ 216 (227)
T cd03750 175 -------EDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRL 216 (227)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEE
Confidence 699999999999999999998775 8899999999996 5653
No 17
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.3e-41 Score=273.68 Aligned_cols=184 Identities=32% Similarity=0.495 Sum_probs=171.3
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecC-cCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRD-YSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~-~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+++|+|+|||+++||||||+|+|.+.|+.+..++ .+|||+|++++++++||..+|++.+.++++.+++.|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4689999999999999999999999998886776 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeee-CeEEEcCchhhHHHHHhcccCCCCCC
Q 027418 91 CPAMGQLLSNTL----YYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 91 ~~~la~~i~~~~----~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
++.+++.+++.+ +..++||+++++|+||+|++++|+||.+||+|++.++ +++++|+|+++++++||+.++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~----- 155 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYK----- 155 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHT-----
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhcc-----
Confidence 996666666655 4445899999999999998888999999999999999 799999999999999999975
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 166 ~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
++|+++||++++.+||+.+.++|..++++++|++|
T Consensus 156 --------~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 156 --------PDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp --------TTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred --------CCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 69999999999999999999999999999999987
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-41 Score=279.65 Aligned_cols=185 Identities=21% Similarity=0.235 Sum_probs=173.3
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+++..+.+++.+||++|+++++|++||..+|++.+.++++.+++.|++.++++++
T Consensus 25 a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 104 (213)
T cd03752 25 AISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIP 104 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56789999999999999999999999987776679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~----r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++..++.. +.|||+|++|++|||++.+|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 105 v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~------ 178 (213)
T cd03752 105 VEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYK------ 178 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhcc------
Confidence 999999999887443 3689999999999997766999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
++|+++||++++++||..+.++|..++.+++|.+|
T Consensus 179 -------~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 179 -------DDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 79999999999999999999999888899999875
No 19
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=4.2e-41 Score=279.60 Aligned_cols=193 Identities=21% Similarity=0.302 Sum_probs=177.8
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|++||+.+|++.+.+.++.++..|.+.+++.++
T Consensus 25 av~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 103 (224)
T TIGR03633 25 AVKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPID 103 (224)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999984 4666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~--~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.++. ++ .|||+|++||||+|+ ++|+||.+||+|++.+++++++|+|+++++++|++.|+
T Consensus 104 ~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~------ 176 (224)
T TIGR03633 104 VETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYR------ 176 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhcc------
Confidence 99999999999854 32 689999999999995 45999999999999999999999999999999999855
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEee
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 219 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~ 219 (223)
++|+++||++++++||..+.+ |..+++.++|++|+++|..++.+.
T Consensus 177 -------~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~ 221 (224)
T TIGR03633 177 -------EDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLS 221 (224)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECC
Confidence 799999999999999999888 888999999999999997666554
No 20
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.7e-41 Score=284.72 Aligned_cols=189 Identities=17% Similarity=0.172 Sum_probs=177.4
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+++.++..++.+|||+|+++++++++|..+|++.+.+.++.++..|.+.++++++
T Consensus 27 av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 106 (253)
T PTZ00246 27 AINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQP 106 (253)
T ss_pred HHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56789999999999999999999999997776677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~----r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++..++.. +.|||+|++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 107 v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~------ 180 (253)
T PTZ00246 107 VEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWK------ 180 (253)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhcc------
Confidence 999999999887543 3789999999999997767999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 212 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g 212 (223)
++|+++||++++++||..+.++|..++++++|++|+++|
T Consensus 181 -------~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 181 -------EDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 699999999999999999999999899999999999986
No 21
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-41 Score=275.17 Aligned_cols=181 Identities=18% Similarity=0.296 Sum_probs=167.9
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.+.. ++..+..+||++|+++++|++||+.+|++.+.++++.+++.|+..++++++
T Consensus 23 av~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (207)
T cd03755 23 AVRKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVT 101 (207)
T ss_pred HHHcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4678999999999999999999997764 556667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~--~~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++++ |.++ .|||+|++|+||+|++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 102 ~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~------ 175 (207)
T cd03755 102 VEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYK------ 175 (207)
T ss_pred HHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhcc------
Confidence 999999999999 4444 789999999999998877999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
++|+++||++++++||..+.+ .++.++||+++
T Consensus 176 -------~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 176 -------EEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 699999999999999999987 56789999875
No 22
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-40 Score=274.61 Aligned_cols=184 Identities=18% Similarity=0.237 Sum_probs=169.7
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+.+ +.++.+|||+|+++++|++||+.+|++.+.++++.++..|+++++++++
T Consensus 23 av~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 99 (211)
T cd03749 23 AVKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIP 99 (211)
T ss_pred HHhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4567999999999999999999998765 4567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYY--K--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~--~--r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++..++. + +.|||+|++||+|||+++ |+||.+||+|++.+++++|+|+|++.++++||+.|+.
T Consensus 100 v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~g-p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~----- 173 (211)
T cd03749 100 VSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESG-PHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEE----- 173 (211)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCC-CeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhcc-----
Confidence 99999999998864 2 378999999999999765 9999999999999999999999999999999999863
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccc-ccCCcEEEEEEc
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDI-YTGDKLEIVVLN 209 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~-~~~~~iei~ii~ 209 (223)
.++|+++|++++++++|+.+.++|. .++.++||++|+
T Consensus 174 ------~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 174 ------FEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred ------ccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 2589999999999999999999887 889999999984
No 23
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.7e-40 Score=265.67 Aligned_cols=180 Identities=32% Similarity=0.468 Sum_probs=172.3
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|+|.+.|.....++.+|||+|+++++++++|..+|++.+.++++.++..|.+.+++.++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999877788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC--CCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRF--FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 173 (223)
Q Consensus 96 ~~i~~~~~~~r~--~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~ 173 (223)
+++++++|.++. |||++++|+||+|++++|+||.+||+|++.+++++++|+|+++++++||+.++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~------------- 147 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK------------- 147 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHcc-------------
Confidence 999999998875 99999999999998677999999999999999999999999999999999966
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 174 ~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
++||.+||++++.+||+.+.++|..++.+++|.+|
T Consensus 148 ~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 148 PDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred CCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 69999999999999999999999989999999875
No 24
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-40 Score=275.29 Aligned_cols=186 Identities=20% Similarity=0.306 Sum_probs=168.7
Q ss_pred cccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027418 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
...++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+++++|++||+.+|++.+.++++.++..|++++++++
T Consensus 24 a~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 102 (215)
T cd03754 24 AVKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEM 102 (215)
T ss_pred HHhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34456899999999999999999999875 44556889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCC
Q 027418 90 SCPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 90 ~~~~la~~i~~~~--~~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
+++.+++.+++++ |.++ .|||++++|+||+|++++|+||.+||+|++.+++++|+|+|+++++++||+.|++
T Consensus 103 ~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~---- 178 (215)
T cd03754 103 PVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKK---- 178 (215)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhcc----
Confidence 9999999999985 5544 5799999999999987679999999999999999999999999999999999873
Q ss_pred CCCCCCCCCCC--CHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 166 LLPAQDAVTPL--SEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 166 ~~~~~~~~~~l--s~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
..+| +++||++++++||..+.++|. .+.++||.++
T Consensus 179 -------~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 179 -------KPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred -------ccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 1247 999999999999999999986 4889999875
No 25
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.2e-40 Score=278.07 Aligned_cols=192 Identities=22% Similarity=0.310 Sum_probs=176.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.+. .++..++.+||++|+++++|++||..+|++.+.++++.+++.|+..++++++
T Consensus 32 av~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 110 (241)
T PRK03996 32 AVKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIG 110 (241)
T ss_pred HHHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 467899999999999999999999985 4666778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh--c--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYK--R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~--r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.++.. + .|||+|++||||+|+++ |+||.+||+|++.+++++|+|+|++.++++||+.|+
T Consensus 111 ~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~g-p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 183 (241)
T PRK03996 111 VETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGG-PRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYK------ 183 (241)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCc-CEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcc------
Confidence 999999999998543 2 78999999999999755 999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEe
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYM 218 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~ 218 (223)
++|+++||++++.+||+.+.++ ..++++++|++|+++|..++.+
T Consensus 184 -------~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~ 227 (241)
T PRK03996 184 -------EDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKL 227 (241)
T ss_pred -------cCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEEC
Confidence 6999999999999999999875 5578999999999998655544
No 26
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-40 Score=272.48 Aligned_cols=183 Identities=22% Similarity=0.317 Sum_probs=170.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.+. .++..++.+||++|+++++|++||..+|++.+.++++.+++.|++++++.++
T Consensus 24 av~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 102 (211)
T cd03756 24 AVKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPID 102 (211)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999975 4666789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYY--K--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~--~--r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.++. + +.|||++++||||+|+++ |+||.+||+|++.+++++++|+|++.++++||+.|+
T Consensus 103 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~-~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 175 (211)
T cd03756 103 VEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGG-PRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYK------ 175 (211)
T ss_pred HHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCC-CEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhcc------
Confidence 99999999998854 3 378999999999999754 999999999999999999999999999999999955
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN 209 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~ 209 (223)
++|+++||++++.+||..+.+++. ++.+++|++|+
T Consensus 176 -------~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 176 -------EDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 799999999999999999988776 88999999986
No 27
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-40 Score=273.14 Aligned_cols=183 Identities=17% Similarity=0.151 Sum_probs=168.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.++ .+...++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++++++
T Consensus 26 a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~ 104 (212)
T cd03751 26 AVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIP 104 (212)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999986 4555678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~----r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++.. ..|||+|++|+||+|+++ |+||.+||+|++.+++++|+|+|+..++++||+.|+
T Consensus 105 v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~g-p~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~------ 177 (212)
T cd03751 105 VKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDG-PQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKF------ 177 (212)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCc-CEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhcc------
Confidence 999999999988553 268999999999999654 999999999999999999999999999999999966
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
++||++||+++++++|..+.+.+...+.++||.++
T Consensus 178 -------~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 178 -------SELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 69999999999999999999866667789998874
No 28
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2.3e-40 Score=272.47 Aligned_cols=183 Identities=23% Similarity=0.329 Sum_probs=170.8
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+||++++||||||+|++.+.+ ++..++.+||++|++++++++||..+|++.+.+.++..+..|+..+++.++
T Consensus 23 ~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~ 101 (209)
T cd01911 23 AVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIP 101 (209)
T ss_pred HHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4568999999999999999999999875 555688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~--~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++++++.++ .++ .|||+|++||||+|++++|+||.+||.|++.+++++++|+|+++++++||+.|+
T Consensus 102 ~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~------ 175 (209)
T cd01911 102 VEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYK------ 175 (209)
T ss_pred HHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcc------
Confidence 9999999999884 333 689999999999998877999999999999999999999999999999999955
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
++|+++||++++.+||..+.++|. ++.+++|+++
T Consensus 176 -------~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 176 -------KDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred -------cCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 799999999999999999999998 9999999875
No 29
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-40 Score=256.78 Aligned_cols=202 Identities=25% Similarity=0.452 Sum_probs=195.5
Q ss_pred CcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCC
Q 027418 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ 88 (223)
Q Consensus 9 ~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (223)
++...+|++++|+++++||.||+|.|....+...+.+++|||+++|++++|.+|++.|++.+.++++...+.|+++.+|.
T Consensus 2 ~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~ 81 (204)
T KOG0180|consen 2 SIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREERE 81 (204)
T ss_pred cceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeee-CeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 89 MSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 89 ~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+-|+.+++.+|..+|++|+-||.+..++||+|++++|++..+|..|..... +|++.|.+++..++.+|..|
T Consensus 82 i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly-------- 153 (204)
T KOG0180|consen 82 IKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALY-------- 153 (204)
T ss_pred cCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999998765 59999999999999999995
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~~~~ 223 (223)
+|||..+|.++.+..+|.++.+||+.+||...+++|+|+.+....+|+|||
T Consensus 154 -----~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK~RmD 204 (204)
T KOG0180|consen 154 -----EPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLKGRMD 204 (204)
T ss_pred -----CCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhhhcCC
Confidence 489999999999999999999999999999999999999999999999998
No 30
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-39 Score=267.30 Aligned_cols=182 Identities=20% Similarity=0.259 Sum_probs=167.4
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|+++++|++||+.+|++.+.+.++.+++.|++.++++++
T Consensus 23 a~~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (213)
T cd03753 23 AIKLGSTAIGIKTKEGVVLAVEKRITSP-LMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMT 101 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEecccCCc-CcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4578999999999999999999999865 556678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh--c-------CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCC
Q 027418 91 CPAMGQLLSNTLYYK--R-------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 91 ~~~la~~i~~~~~~~--r-------~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~ 161 (223)
++.+++.+++.+|.. + .|||+|++||||+|+++ |+||.+||+|++.+++++++|+++++++++|++.|+
T Consensus 102 ~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~g-p~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~- 179 (213)
T cd03753 102 VESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENG-PQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYH- 179 (213)
T ss_pred HHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCC-CEEEEECCCCCeecccEEEECCCcHHHHHHHHhhcc-
Confidence 999999999998652 1 48999999999999655 999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 162 ~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
++|+++||++++++||+.+.+++ .++.++||++|
T Consensus 180 ------------~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 180 ------------KDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred ------------CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 69999999999999999987755 67889999875
No 31
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=250.05 Aligned_cols=187 Identities=20% Similarity=0.251 Sum_probs=173.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+++.|+|.|||+.++||||++++|+++. +..+++..||+.|++||+|++||+.+|++.++++.|.++++|++.|+++++
T Consensus 30 AikLGsTaIGv~TkEgVvL~vEKritSp-Lm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~ 108 (241)
T KOG0176|consen 30 AIKLGSTAIGVKTKEGVVLAVEKRITSP-LMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPIS 108 (241)
T ss_pred HHhcCCceeeeeccceEEEEEeccccCc-ccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCccc
Confidence 5688999999999999999999999986 667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-------c--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCC
Q 027418 91 CPAMGQLLSNTLYYK-------R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 91 ~~~la~~i~~~~~~~-------r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~ 161 (223)
++.+.+.++++.... + .|||||++|+||+|.++ |+||+.||||++.++++-|||+|++-|.+.|++.|+
T Consensus 109 VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~g-pqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~- 186 (241)
T KOG0176|consen 109 VESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETG-PQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYH- 186 (241)
T ss_pred HHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCC-ceEEEeCCCCceEEecceeccccchHHHHHHHHHHh-
Confidence 999999999987321 1 58999999999999666 999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027418 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 213 (223)
Q Consensus 162 ~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~ 213 (223)
++|+++||+.+++..|+..++. ..+..|+++.+|+++|-
T Consensus 187 ------------~~ltL~ea~~~~L~iLkqVMee-Kl~~~Nvev~~vt~e~~ 225 (241)
T KOG0176|consen 187 ------------KDLTLKEAEKIVLKILKQVMEE-KLNSNNVEVAVVTPEGE 225 (241)
T ss_pred ------------hcccHHHHHHHHHHHHHHHHHH-hcCccceEEEEEcccCc
Confidence 5999999999999999999984 45678999999999853
No 32
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.3e-37 Score=258.87 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=163.5
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcC-CCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (223)
++++|+|+|||+++||||||+|++. ++.+|||+|+|+++|+++|+.+|++.++++.+.+++.|.+.++ .++
T Consensus 23 av~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~ 94 (228)
T TIGR03691 23 GIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDV 94 (228)
T ss_pred HHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 4578999999999999999999962 3678999999999999999999999999999999999999997 689
Q ss_pred CHHHHHHHHHHHHHhh---cCCCeeEEEEEEEEcC-CCCeEEEEEcCCCCeeeeC-eEEEcCchhhHHHHHhcccCCCCC
Q 027418 90 SCPAMGQLLSNTLYYK---RFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSP 164 (223)
Q Consensus 90 ~~~~la~~i~~~~~~~---r~~P~~v~~ilaG~d~-~~~~~ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~ 164 (223)
+++.+++.+++.++.. +.|||+|++|+||||+ +.+|+||.+||+|++.++. ++|+|+|++.++++||++|+
T Consensus 95 ~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~---- 170 (228)
T TIGR03691 95 TGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYR---- 170 (228)
T ss_pred cHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcC----
Confidence 9999999888876432 4689999999999986 4569999999999999976 89999999999999999976
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHH--hcccccCCcEEEEEEcCCC
Q 027418 165 LLLPAQDAVTPLSEAEAVDLVKTCFASAT--ERDIYTGDKLEIVVLNKDG 212 (223)
Q Consensus 165 ~~~~~~~~~~~ls~~eai~~~~~~l~~~~--~~d~~~~~~iei~ii~~~g 212 (223)
++||.+||++++++||..+. +++..++.++||.+|++++
T Consensus 171 ---------~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 171 ---------DGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR 211 (228)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence 69999999999999999995 4566888999999999765
No 33
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-37 Score=245.23 Aligned_cols=204 Identities=23% Similarity=0.352 Sum_probs=190.7
Q ss_pred CCCCCcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHH
Q 027418 3 KQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQ 82 (223)
Q Consensus 3 ~~~~~~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (223)
|-++|..|++. ||++||+||+|||+||+|+..++|++...++.++|++++|++++|+||..+|++.+.+.|.....+..
T Consensus 30 ~~qrt~~p~vT-GTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn 108 (256)
T KOG0185|consen 30 PIQRTLNPIVT-GTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDN 108 (256)
T ss_pred CcccccCceec-cceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccc
Confidence 66789999998 99999999999999999999999999999999999999999999999999999999999998877633
Q ss_pred -HhcCCCCCHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhccc
Q 027418 83 -HQHNKQMSCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159 (223)
Q Consensus 83 -~~~~~~~~~~~la~~i~~~~~~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~ 159 (223)
+..|+.+.|+.+++.+.+++|.+| +.|++..++|||++.++.|+|-.+|.-|..++.+.+|+|.|.+.|.++|++.+
T Consensus 109 ~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~ 188 (256)
T KOG0185|consen 109 RLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEW 188 (256)
T ss_pred ccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhh
Confidence 456799999999999999999987 89999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027418 160 KSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 217 (223)
Q Consensus 160 ~~~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~ 217 (223)
..+ -++++.+||.+++.+||+....||+.+.++++|.+|+.+|+++..
T Consensus 189 ~~k----------~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~ 236 (256)
T KOG0185|consen 189 EKK----------GEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISK 236 (256)
T ss_pred hcc----------chhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecC
Confidence 632 268999999999999999999999999999999999999998653
No 34
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-36 Score=235.59 Aligned_cols=197 Identities=28% Similarity=0.353 Sum_probs=186.1
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+..|||++||++++||||++|+|.+.|.++.++-.+|+-+|.|+|+||-||.++|.|.+.+.++-.+..|..+++++++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 35569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 91 ~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~ 170 (223)
+...|+.++++.|++|- -+.+.+||||||+..++++|.|--.|.+.+.+++.-|+|+.+++++++..
T Consensus 95 v~~aA~l~r~~~Y~~re-~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~------------ 161 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE-MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDAN------------ 161 (224)
T ss_pred HHHHHHHHHHHHHhCHH-hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhh------------
Confidence 99999999999999872 37889999999998778999998888999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeecc
Q 027418 171 DAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELR 221 (223)
Q Consensus 171 ~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~~ 221 (223)
|+|+|++||++....+|+..|+.||-.+|+-+.+.+|+++|+++..++.-
T Consensus 162 -~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d 211 (224)
T KOG0174|consen 162 -WRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGD 211 (224)
T ss_pred -cCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCC
Confidence 45899999999999999999999999999999999999999999888653
No 35
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-36 Score=232.75 Aligned_cols=190 Identities=25% Similarity=0.374 Sum_probs=180.8
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|.+++||++.|+|++|+|+....+.+++.++.+|+++++++++|+++|..+|+.++.+++.+.++.|..++|.+++|+..
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh--hcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCC
Q 027418 95 GQLLSNTLYY--KRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 95 a~~i~~~~~~--~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~ 172 (223)
|+++++.+.. +..+||.|++|+||+|++.+|.||++|..|+..+.+|++.|.|+.+..++|++.|+
T Consensus 81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~------------ 148 (200)
T KOG0177|consen 81 AHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK------------ 148 (200)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhC------------
Confidence 9999999954 33789999999999999977999999999999999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027418 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 217 (223)
Q Consensus 173 ~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~ 217 (223)
||||.+||+++..+|+.++.+|-..+-.++.|.+|+|+|++..+
T Consensus 149 -pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~ 192 (200)
T KOG0177|consen 149 -PDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLD 192 (200)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceecc
Confidence 79999999999999999999999888899999999999997543
No 36
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-35 Score=239.53 Aligned_cols=196 Identities=21% Similarity=0.324 Sum_probs=182.9
Q ss_pred CCcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhc
Q 027418 6 PAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQH 85 (223)
Q Consensus 6 ~~~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 85 (223)
..-|.+.+-||||+||.++||||+++|+|.+.|..+..++..||+.+.++|+||.+|-++|...+.+.+..+.+.|++..
T Consensus 28 ~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t 107 (271)
T KOG0173|consen 28 LKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNT 107 (271)
T ss_pred CCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhcc
Confidence 44556777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCC
Q 027418 86 NKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 86 ~~~~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
+|.+.+-..-+.+.+.+|.+.. -.++.+|+||+|++| ||||.+.|.|+....+|.+.|||+..|+++||..|
T Consensus 108 ~R~~rVv~A~~mlkQ~LFrYqG-~IgA~LiiGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~------ 179 (271)
T KOG0173|consen 108 GRKPRVVTALRMLKQHLFRYQG-HIGAALILGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRW------ 179 (271)
T ss_pred CCCCceeeHHHHHHHHHHHhcC-cccceeEEccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhc------
Confidence 9999999999999999976542 378999999999998 99999999999999999999999999999999994
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 166 ~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
+|||++|||++++.+|+...+..|..+|+++++|+|++.++...
T Consensus 180 -------k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~l 223 (271)
T KOG0173|consen 180 -------KPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYL 223 (271)
T ss_pred -------CcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCcccc
Confidence 58999999999999999999999999999999999998877653
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=240.29 Aligned_cols=191 Identities=27% Similarity=0.344 Sum_probs=184.6
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
-.+|||.+|++++.||++|+|+|.+.|.+|-+....||.+||++.+-.++|.++|+++..+.+..+|+.|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCC
Q 027418 92 PAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 92 ~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
...++++++++|++|..-+.+...|||||+.| |.||.+|..|.....+-.++|+|+.+|+++|+..|+
T Consensus 148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr----------- 215 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYR----------- 215 (285)
T ss_pred HHHHHHHHHHHhhccCcchhheeeEeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCCC-----------
Confidence 99999999999999977899999999999877 999999999999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 172 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 172 ~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
+||+.+||.+++++|+..|..||..+|+-+.++.|+.+|...+
T Consensus 216 --~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v 258 (285)
T KOG0175|consen 216 --YDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKV 258 (285)
T ss_pred --CCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceec
Confidence 5999999999999999999999999999999999999998654
No 38
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-35 Score=231.05 Aligned_cols=193 Identities=21% Similarity=0.265 Sum_probs=179.7
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++.+.+|+||+-.+||||||++++.++..+-.+...+||++|+|+|+|+.+|+++|+..|++.+|..+++|.++|++++|
T Consensus 27 ais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP 106 (249)
T KOG0178|consen 27 AISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIP 106 (249)
T ss_pred HHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 35678999999999999999999999876666778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.|.+.+++..+.++ .|||||++|.+|||+..+.+||+.||||++..|++.++|.++..|++.|++.|++
T Consensus 107 ~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykd----- 181 (249)
T KOG0178|consen 107 CEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKD----- 181 (249)
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhcc-----
Confidence 9999999999996544 7999999999999998779999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 215 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~ 215 (223)
..++++||+.+|++.|..+.+.+..+...+|++.++++.-+-
T Consensus 182 -------d~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~ 223 (249)
T KOG0178|consen 182 -------DENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT 223 (249)
T ss_pred -------ccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce
Confidence 457799999999999999999998899999999999987554
No 39
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=226.22 Aligned_cols=189 Identities=19% Similarity=0.216 Sum_probs=174.4
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++.+|.+.|||+-.||||||++++..+. +....+.+|+++|.++|+|.+||..+|++.+++..++.++.|...|+++++
T Consensus 28 Av~~G~~SvGi~A~nGvVlatekk~~s~-L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~p 106 (233)
T KOG0181|consen 28 AVVNGQTSVGIKAANGVVLATEKKDVSP-LVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIP 106 (233)
T ss_pred HHhCCCCceeeeecCceEEEeccCCCCc-cchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCC
Confidence 5678999999999999999999977654 667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
+..+.+.++.++++++ .||||+++++||||.. +|.||++||||++..|+++|+|.+...++++||++|+
T Consensus 107 t~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~------ 179 (233)
T KOG0181|consen 107 TTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYN------ 179 (233)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccceeehhhhhhccCcchHHHHHHHHhc------
Confidence 9999999999997654 7999999999999976 5999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 215 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~ 215 (223)
.+|.++|+++.++..|++..+... +.+++||.++..++.++
T Consensus 180 -------edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~F~~ 220 (233)
T KOG0181|consen 180 -------EDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENGFRR 220 (233)
T ss_pred -------cccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCceee
Confidence 499999999999999999998654 67899999999777664
No 40
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-34 Score=228.21 Aligned_cols=187 Identities=16% Similarity=0.188 Sum_probs=170.1
Q ss_pred cccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027418 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
.++.+++|+|||||+||||+++++.+++..+ .....+|||.|+++|+|+.+|+.+|.+.+..+++.++..|+.+|+.++
T Consensus 29 KAven~~T~IGIk~kdGVVl~vEKli~SkLy-~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~pi 107 (254)
T KOG0184|consen 29 KAVENSGTCIGIKCKDGVVLAVEKLITSKLY-EPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPI 107 (254)
T ss_pred HHHhcCCcEEEEecCCeEEEEEeeeeccccc-ccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCC
Confidence 3688999999999999999999999998744 567889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCC
Q 027418 90 SCPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 90 ~~~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
|...++..++++.+..+ .||||++.++++||.+| |+||+++|||..+.++.+|+|.|.+.|++.||++--
T Consensus 108 P~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g-~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~----- 181 (254)
T KOG0184|consen 108 PGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEG-PQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKI----- 181 (254)
T ss_pred chHHHHHHHHhhhheeehhhccccccceEEEEEEeCCC-ceEEEEcCCCCccceeeeeccchhHHHHHHHHhccc-----
Confidence 99999999999996654 68999999999999555 999999999999999999999999999999999943
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q 027418 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 211 (223)
Q Consensus 166 ~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~ 211 (223)
.+|+.+|+++.+.+.+..+.+......-.+|+.|+..+
T Consensus 182 --------~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~e 219 (254)
T KOG0184|consen 182 --------DEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEE 219 (254)
T ss_pred --------ccccHHHHHHHHHheeEeecccccCcceEEEEEEEEee
Confidence 48999999999999999888765555557888888764
No 41
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-34 Score=226.81 Aligned_cols=190 Identities=18% Similarity=0.285 Sum_probs=173.8
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++.+|+|+||++++|+|||+.+++.... +...+...||..+++|++|+++|+.+|++.|+++.|.+|+.|++..+.+++
T Consensus 26 AvrkGstaVgvrg~~~vvlgvEkkSv~~-Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvt 104 (249)
T KOG0183|consen 26 AVRKGSTAVGVRGNNCVVLGVEKKSVPK-LQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVT 104 (249)
T ss_pred HHhcCceEEEeccCceEEEEEeecchhh-hhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcH
Confidence 5789999999999999999999887654 667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.++.+|+.+.+.++ .||||++.|++|+|++|.|+||++||+|.+.+|.+.|+|.+++.+..+||+.|.++
T Consensus 105 veyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~---- 180 (249)
T KOG0183|consen 105 VEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEE---- 180 (249)
T ss_pred HHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccc----
Confidence 9999999999885443 68999999999999999999999999999999999999999999999999998852
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEE
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG-IHR 215 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g-~~~ 215 (223)
+-.+..+++++++++|.+..+.+ ++++|++++..++ .+.
T Consensus 181 -------~~~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~~~~~ 220 (249)
T KOG0183|consen 181 -------AIATEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRKDLKM 220 (249)
T ss_pred -------cccccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCCceee
Confidence 34789999999999999999854 4799999999987 443
No 42
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-33 Score=222.41 Aligned_cols=188 Identities=21% Similarity=0.245 Sum_probs=173.7
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|++.||+|.++..||++-+|..+- +++-..|||+|++|+++.++|+++|++.|.++++.+|..++..++++++
T Consensus 28 avkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~p 104 (264)
T KOG0863|consen 28 AVKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLP 104 (264)
T ss_pred HHhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCccc
Confidence 5789999999999999999999988753 6778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
+..+...+.+.++.++ .|||||.++++|||+.| |+||.++|+|++.++...+||+.++.++++||+.+..
T Consensus 105 v~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~----- 178 (264)
T KOG0863|consen 105 VLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEE----- 178 (264)
T ss_pred HHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHH-----
Confidence 9999999999987543 68999999999999877 9999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCCCe
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERD-IYTGDKLEIVVLNKDGI 213 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d-~~~~~~iei~ii~~~g~ 213 (223)
+++++.+|.|+.++.||+.+...| ..++.+++|.|+.++..
T Consensus 179 ------f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p 220 (264)
T KOG0863|consen 179 ------FEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP 220 (264)
T ss_pred ------HhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc
Confidence 369999999999999999999754 67889999999999853
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=3.7e-32 Score=216.47 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=146.2
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPA 93 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (223)
|||+|||+++||||||+|+|++.|.++.+++.+||++| +++++|++||..+|++.+.+.++.+++.|+... ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHH
Confidence 79999999999999999999999999999999999999 999999999999999999999999999988321 466
Q ss_pred HHHHHHHHHHhhc-CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeee--CeEEEcCchhhHHHHHhcccCCCCCCCCCCC
Q 027418 94 MGQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 94 la~~i~~~~~~~r-~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~ 170 (223)
+++.+..+ ...+ .+|+.+++|++ |. |+||.+|+.|++.+. ++.++|+|+.+++++|++.|+.
T Consensus 76 ~a~l~~~l-~~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~--------- 140 (172)
T PRK05456 76 AVELAKDW-RTDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLEN--------- 140 (172)
T ss_pred HHHHHHHH-HhccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhc---------
Confidence 66555433 2223 36888999994 42 699999999999766 7999999999999999999762
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q 027418 171 DAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVV 207 (223)
Q Consensus 171 ~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~i 207 (223)
|+| ||++++.+|++++.+||..++.+++|-.
T Consensus 141 ---~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 141 ---TDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred ---CCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 589 9999999999999999999999998864
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=2.2e-31 Score=210.82 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=142.8
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecC-ceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|++.|.++.+++.+||++|++ +++|+++|..+|++.+.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999988774 33
Q ss_pred HHHHHHHHHhhcCCCee-EEEEEEEEcCCCCeEEEEEcCCCCeeee--CeEEEcCchhhHHHHHhcccCCCCCCCCCCCC
Q 027418 95 GQLLSNTLYYKRFFPYY-SFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~i~~~~~~~r~~P~~-v~~ilaG~d~~~~~~ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
++.+... ...+.+|+. +.+++++++ +||.+||.|.+.+. ++.++|||+.+|+++||..|+
T Consensus 76 a~l~~~l-~~~~~~~~l~a~~iv~~~~-----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk----------- 138 (171)
T cd01913 76 VELAKDW-RTDRYLRRLEAMLIVADKE-----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLD----------- 138 (171)
T ss_pred HHHHHHH-HhccCcCceEEEEEEeCCC-----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhc-----------
Confidence 4443333 333444555 767765443 89999999999998 499999999999999999987
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q 027418 172 AVTP-LSEAEAVDLVKTCFASATERDIYTGDKLEIVV 207 (223)
Q Consensus 172 ~~~~-ls~~eai~~~~~~l~~~~~~d~~~~~~iei~i 207 (223)
++ |+ +.+++.+|++.|.+||..+|.+++|..
T Consensus 139 --~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 139 --HTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred --cCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 54 99 559999999999999999999998764
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=3e-31 Score=210.10 Aligned_cols=166 Identities=20% Similarity=0.257 Sum_probs=143.2
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|++.|.++.+++.+||++| +++++|+++|..+|++.+.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999887633 3666
Q ss_pred HHHHHHHHHhhcCC-CeeEEEEEEEEcCCCCeEEEEEcCCCCeeee--CeEEEcCchhhHHHHHhcccCCCCCCCCCCCC
Q 027418 95 GQLLSNTLYYKRFF-PYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~i~~~~~~~r~~-P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
++.+++. ..++++ .+.+.+|++|+ ++||.+||.|.+.++ ++.++|||+.+|+++||..|+.
T Consensus 76 a~l~~~~-~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~---------- 139 (171)
T TIGR03692 76 VELAKDW-RTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN---------- 139 (171)
T ss_pred HHHHHHH-hhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc----------
Confidence 6666663 222322 34477777644 389999999999996 6999999999999999999853
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q 027418 172 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVV 207 (223)
Q Consensus 172 ~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~i 207 (223)
++|+ |++++.++++.|.+||..+|.+++|..
T Consensus 140 --~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 140 --TDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --CCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 4777 999999999999999999999998864
No 46
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=205.90 Aligned_cols=199 Identities=19% Similarity=0.263 Sum_probs=180.1
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCC
Q 027418 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
|+...+-|-|.||++++|++|+++.++++.. ++.++...++|+|+++|+|+++|..+|++..+++++.++.++++.||.
T Consensus 29 fkAin~~gltsVavrgkDcavvvsqKkvpDK-Lld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gy 107 (246)
T KOG0182|consen 29 FKAINQAGLTSVAVRGKDCAVVVTQKKVPDK-LLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGY 107 (246)
T ss_pred HHHhhcCCCceEEEcCCceEEEEecccCccc-ccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCC
Confidence 4444455999999999999999999999976 667778899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCC
Q 027418 88 QMSCPAMGQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPS 163 (223)
Q Consensus 88 ~~~~~~la~~i~~~~~--~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~ 163 (223)
+||++.|++.++++.+ .++ +||+||.+.+.|+|++.+|.+|..||.|.+..+++.+.|.....+.++||+.|+.
T Consensus 108 emp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk-- 185 (246)
T KOG0182|consen 108 EMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKK-- 185 (246)
T ss_pred CCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhcc--
Confidence 9999999999999884 444 8999999999999999889999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEee
Q 027418 164 PLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 219 (223)
Q Consensus 164 ~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~ 219 (223)
..+++.+|++++++.||..+...|.. .+.+||.+++++..++..+.
T Consensus 186 ---------~~~~t~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~Ls 231 (246)
T KOG0182|consen 186 ---------DIDLTFEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRILS 231 (246)
T ss_pred ---------CccchHHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeecc
Confidence 13588999999999999999988874 46999999999987665553
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=3.1e-28 Score=190.09 Aligned_cols=161 Identities=27% Similarity=0.339 Sum_probs=152.6
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+||++++|||+||+|++.+.+........+|+++++++++++++|..+|++.+.++++.+++.|+..+++++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998776678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeee-CeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 173 (223)
Q Consensus 96 ~~i~~~~~~~r-~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~ 173 (223)
+.+++.++.++ .+|+++++|+||+|+ ++|+||.+||+|.+.++ +++++|+++..+.++|++.++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~------------- 146 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYK------------- 146 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhc-------------
Confidence 99999998876 489999999999997 66999999999999999 899999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027418 174 TPLSEAEAVDLVKTCFA 190 (223)
Q Consensus 174 ~~ls~~eai~~~~~~l~ 190 (223)
++++++|+++++.+||.
T Consensus 147 ~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 147 PDMTLEEAVELALKALK 163 (164)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999999986
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.2e-19 Score=139.16 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=144.3
Q ss_pred CCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecC-ceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 13 ~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
-+||||++++-++-|+||+|.++|.|+.++..+..|+.+|.. .++.|++|.++|+..|.++++.+++.|.-+.-+ .+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aa 79 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AA 79 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HH
Confidence 369999999999999999999999999999999999988875 799999999999999999999999987622212 56
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeee--CeEEEcCchhhHHHHHhcccCCCCCCCCCC
Q 027418 92 PAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPA 169 (223)
Q Consensus 92 ~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~ 169 (223)
.++++.++.--|.++ +.+-++++ |++ .+|.+...|.+.+. +..|||||..+|.+..+..+..
T Consensus 80 velaKdwr~Dk~lr~---LEAmllVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~-------- 143 (178)
T COG5405 80 VELAKDWRTDKYLRK---LEAMLLVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN-------- 143 (178)
T ss_pred HHHHHhhhhhhHHHH---HhhheeEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc--------
Confidence 777777776656555 77788886 544 58999999998753 4999999999999999999764
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC
Q 027418 170 QDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 210 (223)
Q Consensus 170 ~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~ 210 (223)
+++ .|.+++.++|..+.+-+.+++.++.|..+..
T Consensus 144 ----~~l---sA~eIa~~sl~iA~eiciyTN~ni~ve~l~~ 177 (178)
T COG5405 144 ----TEL---SAREIAEKSLKIAGDICIYTNHNIVVEELRL 177 (178)
T ss_pred ----cCC---CHHHHHHHHHhhhheEEEecCCcEEEEEeec
Confidence 455 4567888999999999999999998877653
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.2e-14 Score=114.08 Aligned_cols=187 Identities=19% Similarity=0.215 Sum_probs=148.8
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEec---Cc-eEEEecCChHHHHHHHHHHHHHHHHHHH-hcCCCC
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLA---DK-CVMASSGFQADVKALQKLLAARHLIYQH-QHNKQM 89 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~ 89 (223)
||.|||++-+.|.|+++|+|...|.. ..+.+.|+|... ++ ++++.+|..+-.|.+++.+.+..+...- ..-..+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 78999999999999999999999843 335677877663 45 6778899999999999999887762211 111233
Q ss_pred CHHHHHHHHHHHH---Hhh-c------CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeee----eCeEEEcCchhhHHHHH
Q 027418 90 SCPAMGQLLSNTL---YYK-R------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER----VGYSSQGSGSTLIMPFL 155 (223)
Q Consensus 90 ~~~~la~~i~~~~---~~~-r------~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~----~~~~aiG~g~~~a~~~L 155 (223)
+.-+.+..+.... +.+ + .--|.|++|+||.-..+.|.||.|.|.|++.+ .+|..+|. ..+.+++|
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPil 158 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPIL 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhh
Confidence 4455555554443 222 1 34688999999998888899999999999975 57999998 67889999
Q ss_pred hcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 156 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 156 e~~~~~~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
++.+.. +++++|+.+.++-++....+.+...|-++++.++.+|.....
T Consensus 159 dR~i~~-------------~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~ 206 (255)
T COG3484 159 DRTITY-------------DTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVR 206 (255)
T ss_pred hhhhhc-------------cCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeee
Confidence 999874 999999999999999999999999999999999999976543
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.30 E-value=0.036 Score=44.60 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+-+||..+++|.|||+|+|. ++|-|.-.....|.+.| -.|+=-+-++|
T Consensus 1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEeeL---------YsG~IktdeEL 49 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEEL---------YSGKIKTDEEL 49 (194)
T ss_pred CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHHH---------hCCccCCHHHH
Confidence 678999999999999999983 13446655555554444 23554566777
Q ss_pred HHHHHHHH---Hh--hc--CCCeeEEEEEEEEcCC-----CCeEEEEE-------cCCCCeeeeCeE-----EEcCchhh
Q 027418 95 GQLLSNTL---YY--KR--FFPYYSFNVLGGLDNE-----GKGCVYTY-------DAVGSYERVGYS-----SQGSGSTL 150 (223)
Q Consensus 95 a~~i~~~~---~~--~r--~~P~~v~~ilaG~d~~-----~~~~ly~i-------d~~G~~~~~~~~-----aiG~g~~~ 150 (223)
.+....+= +- .| -+-.+- +|+|-+..- ..-++|.. |-.|.-....-. .+=.|..+
T Consensus 50 ~kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~ 128 (194)
T PF09894_consen 50 LKKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKF 128 (194)
T ss_pred HHHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCHH
Confidence 66554422 10 11 122222 444433221 11355543 222221111111 11124455
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q 027418 151 IMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 211 (223)
Q Consensus 151 a~~~Le~~~~~~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~ 211 (223)
.+.+-++.++. .|.+.|+++++..+..++|..+...-+..++.+++...++.
T Consensus 129 ~K~ia~~~lkk---------~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 129 TKEIANKELKK---------YWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHH---------hcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 55555554432 26689999999999999999998877778889999887764
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.22 E-value=0.38 Score=40.24 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=98.1
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||-+|+-.+++|.|||+|+|.. .+-|.-.|...|.+.| ..|.-.|-++|
T Consensus 1 MtLviay~gknGaviaGDrR~i----------------------~frgdee~re~lEekL---------YsGeIkteEEL 49 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRREI----------------------TFRGDEEDREKLEEKL---------YSGEIKTEEEL 49 (293)
T ss_pred CeEEEEEecCCCcEEeccceEE----------------------EEecChhHHHHHHHHh---------hcCccccHHHH
Confidence 6789999999999999998732 2345556655555444 24555577777
Q ss_pred HHHHHHHHHh-----hc--CCCeeEEEEEEEEcCCC-----CeEEEEEcCCCCeee-----------eC-eEEEcCchhh
Q 027418 95 GQLLSNTLYY-----KR--FFPYYSFNVLGGLDNEG-----KGCVYTYDAVGSYER-----------VG-YSSQGSGSTL 150 (223)
Q Consensus 95 a~~i~~~~~~-----~r--~~P~~v~~ilaG~d~~~-----~~~ly~id~~G~~~~-----------~~-~~aiG~g~~~ 150 (223)
+.+....--. .| .+-..-++++|-+..-. .-++|..-..-...+ .. ..-+=.|..+
T Consensus 50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 7766554310 11 23333345555444322 124554332222211 11 2333345677
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q 027418 151 IMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 211 (223)
Q Consensus 151 a~~~Le~~~~~~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~ 211 (223)
++.+-.+.++. .|.+.++++++..+..++|..+...-...++.++++.+.+.
T Consensus 130 ~Ke~aneflk~---------~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 130 TKEVANEFLKD---------NLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHHh---------hccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 77666666552 37789999999999999999998777778889999988775
No 52
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=76.01 E-value=3.4 Score=31.39 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=37.2
Q ss_pred EEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHH
Q 027418 129 TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDL 184 (223)
Q Consensus 129 ~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ls~~eai~~ 184 (223)
.+|.+|.+....|-..|.|+..|.+.+-.. |+..++++|+.++
T Consensus 72 kvd~~g~I~dakFKTFGCGSAIASSS~aTe-------------wvkgkt~dea~kI 114 (157)
T KOG3361|consen 72 KVDDSGVIEDAKFKTFGCGSAIASSSLATE-------------WVKGKTLDEALKI 114 (157)
T ss_pred EECCCCcEEEeeeeecccchHhhhhHHHHH-------------HHccccHHHHHhc
Confidence 588899999999999999999998888777 5678999998753
No 53
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=57.66 E-value=20 Score=26.87 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027418 175 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 215 (223)
Q Consensus 175 ~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~ 215 (223)
.+++++|.+++..+++.+.++. .++-|.|++..|...
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~~~ 38 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGHLL 38 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-EE
T ss_pred CcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCCEE
Confidence 5789999999999999998753 468899999998543
No 54
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=55.07 E-value=36 Score=26.24 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q 027418 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 214 (223)
Q Consensus 174 ~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~ 214 (223)
+.+|+++|.+++..++..+.+. ++++.+.+++..|--
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~ 42 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHL 42 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCE
Confidence 6899999999999999987763 689999999999853
No 55
>PRK09732 hypothetical protein; Provisional
Probab=49.72 E-value=78 Score=24.10 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 174 ~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
+.||++.|.+++..++..+.+. +.++.|.+++..|.-..
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a 43 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLA 43 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEE
Confidence 4799999999999999988874 46999999999986443
No 56
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=35.65 E-value=69 Score=27.34 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=27.2
Q ss_pred EEEEEEEcCCCCeEEEEEcCCCCeeee---CeEEEcCchhhHHHHHhcc
Q 027418 113 FNVLGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGSTLIMPFLDNQ 158 (223)
Q Consensus 113 ~~ilaG~d~~~~~~ly~id~~G~~~~~---~~~aiG~g~~~a~~~Le~~ 158 (223)
-+=+||.| -.+..+|..|.+... +.||.|.|+ |.....+..
T Consensus 101 IiDIGGQD----~K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~~L 144 (262)
T TIGR02261 101 VLDIGALH----GRAIRMDERGKVEAYKMTSQCASGSGQ-FLENIARYL 144 (262)
T ss_pred EEEeCCCc----eEEEEEcCCCcEeeEEecCcccccccH-HHHHHHHHh
Confidence 34467777 467889999987542 488999987 444444433
No 57
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=35.05 E-value=75 Score=25.88 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEee
Q 027418 180 EAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 219 (223)
Q Consensus 180 eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~ 219 (223)
|++...+..|......|......++|.||+-+|..+++.+
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p 61 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP 61 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec
Confidence 6667777777778888888778899999999987666655
No 58
>PRK02487 hypothetical protein; Provisional
Probab=31.27 E-value=1.9e+02 Score=22.54 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027418 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 212 (223)
Q Consensus 174 ~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g 212 (223)
+.+++++|.+++..+.+.+.++ +.++.|.|+. .|
T Consensus 21 ~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G 54 (163)
T PRK02487 21 PHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NG 54 (163)
T ss_pred CCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CC
Confidence 6899999999999999988764 4589999984 55
No 59
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=31.03 E-value=89 Score=20.62 Aligned_cols=29 Identities=3% Similarity=0.066 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 027418 71 QKLLAARHLIYQHQHNKQMSCPAMGQLLS 99 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~la~~i~ 99 (223)
.+.+++-........|+.++.+++|..+.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 34555566667777899999999998774
No 60
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=30.20 E-value=1e+02 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=28.7
Q ss_pred eEEEEEEEEcCCCCeEEEEEcCCCCeeee---CeEEEcCchhhHHHHHhcc
Q 027418 111 YSFNVLGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGSTLIMPFLDNQ 158 (223)
Q Consensus 111 ~v~~ilaG~d~~~~~~ly~id~~G~~~~~---~~~aiG~g~~~a~~~Le~~ 158 (223)
..-+=+||.| -.+..+|..|.+.+. .-||.|.|+ +.....+..
T Consensus 127 ~tIIDIGGQD----sK~I~~d~~G~v~dF~MNdkCAAGTGr-FLE~~A~~L 172 (293)
T TIGR03192 127 RTILDMGGQD----CKAIHCDEKGKVTNFLMNDKCAAGTGR-GMEVISDLM 172 (293)
T ss_pred CEEEEeCCCc----eEEEEEcCCCcEeeeeecCcccccccH-HHHHHHHHc
Confidence 4455577887 467888999986542 488999987 434444443
No 61
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=26.87 E-value=81 Score=19.49 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=26.3
Q ss_pred EEEcCCCCeeeeCeEEEcCchhhHHHHHhcccC
Q 027418 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 160 (223)
Q Consensus 128 y~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~ 160 (223)
|.|+|+|.+...--...|+....+...|+..+.
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG 35 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALG 35 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhC
Confidence 678999999887777788888888888877653
No 62
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=24.48 E-value=1.3e+02 Score=27.64 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=26.8
Q ss_pred EEEEEEEcCCCCeEEEEEcCCCCeee---eCeEEEcCchhhHHHHHhcc
Q 027418 113 FNVLGGLDNEGKGCVYTYDAVGSYER---VGYSSQGSGSTLIMPFLDNQ 158 (223)
Q Consensus 113 ~~ilaG~d~~~~~~ly~id~~G~~~~---~~~~aiG~g~~~a~~~Le~~ 158 (223)
-+=+||.| -.+..+|..|.+.. .+.||.|.|+ +.....+..
T Consensus 271 IIDIGGQD----sK~I~ld~~G~V~dF~MNDKCAAGTGr-FLE~mA~~L 314 (432)
T TIGR02259 271 VLDIGGQD----TKGIQIDDHGIVENFQMNDRCAAGCGR-YLGYIADEM 314 (432)
T ss_pred EEEeCCCc----eEEEEEcCCCcEeeeeecCcccccchH-HHHHHHHHc
Confidence 34467776 46789999997753 3488999987 434444433
No 63
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=23.22 E-value=89 Score=27.04 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=39.9
Q ss_pred EEEcCC-CCeEEEEEcCCCCeeeeCeEEEcCc-hhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 027418 117 GGLDNE-GKGCVYTYDAVGSYERVGYSSQGSG-STLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194 (223)
Q Consensus 117 aG~d~~-~~~~ly~id~~G~~~~~~~~aiG~g-~~~a~~~Le~~~~~~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~ 194 (223)
-|.|+. |.+-.......|-|... ..|.. -.-..+.|-+.+.. .++++|+|+++...=.....+
T Consensus 78 LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~------------e~ItLE~AL~LLsLPR~iG~h 142 (298)
T COG1754 78 LGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKP------------ETITLEKALKLLSLPRVIGKH 142 (298)
T ss_pred cccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCCh------------hhCcHHHHHHHHcCchhhCCC
Confidence 367865 65566677777776543 45655 44455556666443 479999999986655554443
No 64
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=21.38 E-value=59 Score=19.72 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=21.3
Q ss_pred EcCchhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 027418 144 QGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187 (223)
Q Consensus 144 iG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ls~~eai~~~~~ 187 (223)
.|.....+...+++.... ++++.++.++.+++
T Consensus 13 LGy~~~e~~~av~~~~~~------------~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEK------------PGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHS------------TTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcC------------CCCCHHHHHHHHHh
Confidence 467777778777777521 58898888877654
Done!