Query 027418
Match_columns 223
No_of_seqs 110 out of 1088
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:03:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 2.7E-51 9.3E-56 336.9 30.0 213 7-223 1-213 (213)
2 1ryp_M 20S proteasome; multica 100.0 1.8E-50 6.1E-55 334.2 28.3 217 7-223 1-222 (222)
3 1iru_J 20S proteasome; cell cy 100.0 5.3E-49 1.8E-53 321.5 27.5 203 8-223 1-205 (205)
4 1ryp_J 20S proteasome; multica 100.0 4E-48 1.4E-52 316.1 27.9 201 9-223 2-204 (204)
5 1yar_H Proteasome beta subunit 100.0 7.8E-47 2.7E-51 311.4 25.9 193 8-215 1-194 (217)
6 1g0u_M Proteasome component PR 100.0 9.4E-46 3.2E-50 313.6 24.6 202 2-217 29-243 (266)
7 3h4p_a Proteasome subunit beta 100.0 1.3E-45 4.3E-50 304.6 24.1 189 15-216 1-190 (219)
8 1ryp_H 20S proteasome; multica 100.0 5.2E-45 1.8E-49 297.9 26.4 194 10-218 4-197 (205)
9 1j2q_H Proteasome beta subunit 100.0 6.7E-45 2.3E-49 296.6 26.4 186 16-215 1-187 (202)
10 1ryp_K 20S proteasome; multica 100.0 4.4E-45 1.5E-49 296.7 25.2 190 15-217 1-193 (198)
11 1ryp_N 20S proteasome; multica 100.0 3.2E-45 1.1E-49 304.7 24.4 194 11-217 4-210 (233)
12 1iru_N 20S proteasome; cell cy 100.0 3.5E-45 1.2E-49 301.8 24.1 193 11-217 4-201 (219)
13 1iru_H 20S proteasome; cell cy 100.0 1.4E-44 4.9E-49 295.2 26.2 192 16-221 1-192 (205)
14 3nzj_K Proteasome component PR 100.0 1.8E-44 6.2E-49 308.2 26.7 195 10-217 70-264 (287)
15 1iru_K 20S proteasome; cell cy 100.0 1.4E-44 4.7E-49 294.5 24.2 190 15-217 1-192 (201)
16 1iru_L 20S proteasome; cell cy 100.0 6.2E-44 2.1E-48 291.2 27.1 187 16-216 1-187 (204)
17 1ryp_L 20S proteasome; multica 100.0 4.7E-44 1.6E-48 293.6 26.3 188 16-216 1-188 (212)
18 1ryp_A 20S proteasome; multica 100.0 2E-44 6.9E-49 301.7 23.6 196 11-214 25-225 (243)
19 3nzj_H Proteasome component PU 100.0 1.5E-43 5E-48 299.0 26.6 189 9-212 23-211 (261)
20 3unf_H Proteasome subunit beta 100.0 1.5E-43 5.1E-48 294.8 26.3 187 16-217 1-187 (234)
21 1iru_A 20S proteasome; cell cy 100.0 1.1E-43 3.7E-48 297.8 24.3 193 12-219 32-231 (246)
22 1ryp_I 20S proteasome; multica 100.0 4.3E-43 1.5E-47 290.0 26.3 187 16-217 1-188 (222)
23 1ryp_C 20S proteasome; multica 100.0 1.5E-43 5.2E-48 296.5 23.8 190 12-214 28-223 (244)
24 1iru_C 20S proteasome; cell cy 100.0 1.4E-43 4.9E-48 299.5 23.6 189 12-213 28-221 (261)
25 1yar_A Proteasome alpha subuni 100.0 2.7E-43 9.2E-48 293.1 23.7 186 12-213 31-220 (233)
26 1ryp_E 20S proteasome; multica 100.0 2.5E-43 8.5E-48 294.9 23.4 187 12-213 23-219 (242)
27 1iru_B 20S proteasome; cell cy 100.0 2.5E-43 8.4E-48 293.3 22.2 188 12-215 28-219 (233)
28 3unf_N Proteasome subunit beta 100.0 9.2E-43 3.1E-47 283.2 24.6 189 16-220 1-190 (199)
29 1ryp_D 20S proteasome; multica 100.0 1E-42 3.6E-47 290.9 25.1 189 11-212 24-217 (241)
30 1iru_I 20S proteasome; cell cy 100.0 1.4E-42 4.7E-47 289.1 24.7 186 16-216 1-186 (234)
31 1iru_E 20S proteasome; cell cy 100.0 6.8E-43 2.3E-47 292.1 22.2 186 12-213 31-225 (241)
32 1ryp_G 20S proteasome; multica 100.0 1.4E-42 4.7E-47 290.8 23.1 194 11-216 26-226 (244)
33 1q5r_H Proteasome beta-type su 100.0 2.9E-42 9.9E-47 295.5 25.2 192 11-215 61-269 (294)
34 1iru_G 20S proteasome; cell cy 100.0 1.1E-42 3.7E-47 293.0 22.1 186 12-211 30-219 (254)
35 1q5q_H Proteasome beta-type su 100.0 7.6E-42 2.6E-46 284.8 25.4 187 16-215 1-204 (235)
36 1iru_D 20S proteasome; cell cy 100.0 3.4E-42 1.2E-46 289.0 21.5 185 11-212 25-215 (248)
37 3h4p_A Proteasome subunit alph 100.0 1.7E-42 5.7E-47 293.3 19.6 192 11-219 34-229 (264)
38 1ryp_F 20S proteasome; multica 100.0 6.6E-42 2.3E-46 284.7 21.9 184 11-212 27-219 (233)
39 3nzj_F Proteasome component C1 100.0 4.8E-42 1.7E-46 293.3 21.6 188 11-210 30-221 (288)
40 1iru_F 20S proteasome; cell cy 100.0 7E-42 2.4E-46 289.4 21.5 186 12-212 29-219 (263)
41 1ryp_B 20S proteasome; multica 100.0 1.6E-41 5.4E-46 285.3 22.3 186 12-212 28-218 (250)
42 1j2p_A Alpha-ring, proteasome 100.0 4.9E-41 1.7E-45 281.7 24.9 186 12-214 31-222 (246)
43 2jay_A Proteasome; hydrolase; 100.0 1.5E-41 5E-46 290.8 21.6 191 12-215 54-261 (291)
44 3mi0_A Proteasome subunit alph 100.0 1.5E-40 5.3E-45 278.6 23.4 181 11-213 23-218 (248)
45 1q5q_A Proteasome alpha-type s 100.0 5E-40 1.7E-44 277.4 21.8 180 11-212 23-215 (259)
46 2z3b_A ATP-dependent protease 100.0 7.2E-36 2.5E-40 239.3 18.3 169 13-208 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 5.8E-35 2E-39 232.0 17.9 167 16-208 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 8.6E-35 2.9E-39 231.7 18.7 168 16-209 1-173 (174)
49 3fpw_A HBPS, extracellular HAE 28.2 1.1E+02 0.0037 23.8 5.4 37 174-214 63-99 (192)
50 2a2l_A Unknown; structural gen 25.0 71 0.0024 23.4 3.7 37 174-214 10-46 (145)
51 4gof_A Small glutamine-rich te 22.0 89 0.003 18.9 3.1 23 175-197 21-45 (52)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.7e-51 Score=336.92 Aligned_cols=213 Identities=49% Similarity=0.834 Sum_probs=201.9
Q ss_pred CcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcC
Q 027418 7 AWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN 86 (223)
Q Consensus 7 ~~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (223)
.|+|++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|++.++
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (213)
T 1iru_M 1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNN 80 (213)
T ss_dssp CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 38999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 87 KQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 87 ~~~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++++++.+++.+++++|++|++||++++||||+|++++|+||.+||+|++.+++++|+|+|+++++++||+.++.++..
T Consensus 81 ~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~- 159 (213)
T 1iru_M 81 KAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ- 159 (213)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCS-
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccc-
Confidence 9999999999999999998899999999999999888899999999999999999999999999999999997642211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~~~~ 223 (223)
+.|.++|+++||++++.+||..+.++|..++++++|++|+++|++.+++++|||
T Consensus 160 ---~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 160 ---NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213 (213)
T ss_dssp ---SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred ---ccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence 336789999999999999999999999999999999999999999999999998
No 2
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.8e-50 Score=334.22 Aligned_cols=217 Identities=44% Similarity=0.732 Sum_probs=202.6
Q ss_pred CcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcC
Q 027418 7 AWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN 86 (223)
Q Consensus 7 ~~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (223)
.|+|++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.++
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (222)
T 1ryp_M 1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHN 80 (222)
T ss_dssp CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 38999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred -CCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCC
Q 027418 87 -KQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 87 -~~~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
++++++.+++.+++.+|.+|++||++++||||+|++++|+||.+||+|++.++++.|+|+|+++++++||+.++.++..
T Consensus 81 ~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 81 DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp TCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 9999999999999999998899999999999999888899999999999999999999999999999999997642211
Q ss_pred C----CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027418 166 L----LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 166 ~----~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~~~~ 223 (223)
. -.+..|.++|+++||++++++||..+.++|..++++++|++|+++|++.+++++|||
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence 1 011236789999999999999999999999999999999999999999999999998
No 3
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=5.3e-49 Score=321.50 Aligned_cols=203 Identities=23% Similarity=0.407 Sum_probs=194.0
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCC
Q 027418 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
++|++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|++.+++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 47899999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcC-CCCeEEEEEcCCCCeeee-CeEEEcCchhhHHHHHhcccCCCCCC
Q 027418 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 88 ~~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~-~~~~~ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
+++++.+++.+++.+|++|..||++++|+||||+ +++|+||.+||+|++.++ +|+++|+|+++++++||+.|+
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~----- 155 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE----- 155 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccC-----
Confidence 9999999999999999988889999999999996 567999999999999665 579999999999999999976
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027418 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 166 ~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~~~~ 223 (223)
++|+++||++++.+||..+.++|..++++++|++|+++|++.+.+++|||
T Consensus 156 --------~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 156 --------PNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205 (205)
T ss_dssp --------SSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence 69999999999999999999999999999999999999999999999998
No 4
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=4e-48 Score=316.06 Aligned_cols=201 Identities=23% Similarity=0.479 Sum_probs=192.8
Q ss_pred CcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCC
Q 027418 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ 88 (223)
Q Consensus 9 ~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (223)
+|++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+ +++++++|..+|++.+.++++.+++.|+++++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 80 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA 80 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 589999999999999999999999999999988888999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcC-CCCeEEEEEcCCCCeeee-CeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 89 MSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 89 ~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~-~~~~~ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++++.+++.+++.+|++|..||++++|+||||+ +++|+||.+||+|++.++ +|+++|+|+++++++||+.|+
T Consensus 81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~------ 154 (204)
T 1ryp_J 81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE------ 154 (204)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcC------
Confidence 999999999999999988779999999999997 577999999999999666 589999999999999999976
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~~~~ 223 (223)
++|+++||++++.+||..+.++|..++++++|++|+++|++++.+++|||
T Consensus 155 -------~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 155 -------PNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp -------SSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred -------CCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence 69999999999999999999999989999999999999999999999998
No 5
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=7.8e-47 Score=311.41 Aligned_cols=193 Identities=27% Similarity=0.433 Sum_probs=178.3
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCC
Q 027418 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
|+|++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|+.++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 88 ~~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+++++.+++.+++.+|.+|.|||++++|+|||| + +|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 151 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS------- 151 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S-SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-C-CCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcc-------
Confidence 999999999999999998889999999999999 5 4999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC-CCeEE
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK-DGIHR 215 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~-~g~~~ 215 (223)
++|+++||++++++||..+.++|..++++++|++|++ +|++.
T Consensus 152 ------~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~ 194 (217)
T 1yar_H 152 ------EKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQ 194 (217)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEE
T ss_pred ------cCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEE
Confidence 6999999999999999999999998999999999999 77554
No 6
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=9.4e-46 Score=313.62 Aligned_cols=202 Identities=15% Similarity=0.238 Sum_probs=188.2
Q ss_pred CCCCCCcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHH
Q 027418 2 TKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIY 81 (223)
Q Consensus 2 ~~~~~~~~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (223)
+|++|+|.|.. +|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|
T Consensus 29 ~~~~~~~~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~ 107 (266)
T 1g0u_M 29 SPMVNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTEN 107 (266)
T ss_dssp -----CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHh
Confidence 57899999988 59999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HH-----hcCCCCCHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHH
Q 027418 82 QH-----QHNKQMSCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 154 (223)
Q Consensus 82 ~~-----~~~~~~~~~~la~~i~~~~~~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~ 154 (223)
+. .++++++++.+++.+++++|.+| ++||+|++||||+|++++|+||.+||+|++.+++++++|+|+++++++
T Consensus 108 ~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 108 AYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp HTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred hhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 98 89999999999999999999877 789999999999998767999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEEE
Q 027418 155 LDNQLKSPSPLLLPAQDAVT-----PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD-GIHREY 217 (223)
Q Consensus 155 Le~~~~~~~~~~~~~~~~~~-----~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~-g~~~~~ 217 (223)
||+.|+ + +|+++||++++++||..+.++|..++++++|++|+++ |++...
T Consensus 188 Le~~~~-------------~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~ 243 (266)
T 1g0u_M 188 LRKVVD-------------RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKK 243 (266)
T ss_dssp HTTTCS-------------SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEE
T ss_pred HHHhhc-------------ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcC
Confidence 999976 5 8999999999999999999999999999999999999 876543
No 7
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-45 Score=304.58 Aligned_cols=189 Identities=27% Similarity=0.446 Sum_probs=181.3
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+|+|||+++||||||+|+|.+.|.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeC-eEEEcCchhhHHHHHhcccCCCCCCCCCCCCCC
Q 027418 95 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 173 (223)
Q Consensus 95 a~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~ 173 (223)
++.+++++|.+|++||+|++||||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~------------- 147 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD------------- 147 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCC-------------
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcC-------------
Confidence 9999999998888999999999999986779999999999999999 99999999999999999965
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 174 ~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
++|+++||++++++||..+.++|..++++++|++|+++|++..
T Consensus 148 ~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l 190 (219)
T 3h4p_a 148 RDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIF 190 (219)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEc
Confidence 6999999999999999999999999999999999999987653
No 8
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=5.2e-45 Score=297.92 Aligned_cols=194 Identities=27% Similarity=0.376 Sum_probs=184.8
Q ss_pred cccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027418 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
.++++|+|+|||+++||||||+|+|.+.|.++..++.+||++|++++++++||..+|++.+.++++.+++.|+..+++ +
T Consensus 4 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~ 82 (205)
T 1ryp_H 4 GEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-P 82 (205)
T ss_dssp TCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 456779999999999999999999999998889999999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCC
Q 027418 90 SCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPA 169 (223)
Q Consensus 90 ~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~ 169 (223)
+++.+++.+++.+|.+|.+ |++++|+||||++++|+||.+||+|++.++++.++|+|+++++++||+.|+
T Consensus 83 ~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--------- 152 (205)
T 1ryp_H 83 STETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--------- 152 (205)
T ss_dssp CHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC---------
T ss_pred CHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccC---------
Confidence 9999999999999988765 999999999998667999999999999999999999999999999999976
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEe
Q 027418 170 QDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYM 218 (223)
Q Consensus 170 ~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~ 218 (223)
++|+++||++++.+||..+.++|..++++++|++|+++|+..+.+
T Consensus 153 ----~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 153 ----ENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 699999999999999999999999899999999999999987765
No 9
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=6.7e-45 Score=296.55 Aligned_cols=186 Identities=27% Similarity=0.446 Sum_probs=179.0
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|+.+++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeC-eEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 174 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~ 174 (223)
+.+++.+|.+|.|||++++|+||||++ +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ +
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~-------------~ 146 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT-------------P 146 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETT-EEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC-------------T
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCC-CCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcC-------------C
Confidence 999999999888999999999999974 59999999999999999 99999999999999999976 6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027418 175 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 215 (223)
Q Consensus 175 ~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~ 215 (223)
+|+++||++++.+||..+.++|..++++++|++|+++|++.
T Consensus 147 ~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 187 (202)
T 1j2q_H 147 EIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQ 187 (202)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEE
Confidence 99999999999999999999999899999999999998654
No 10
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=4.4e-45 Score=296.69 Aligned_cols=190 Identities=21% Similarity=0.330 Sum_probs=180.4
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 79999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-C-CCeeEEEEEEEEcC-CCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCC
Q 027418 95 GQLLSNTLYYKR-F-FPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~i~~~~~~~r-~-~P~~v~~ilaG~d~-~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
++.+++.+|.++ . +||++++|+||||+ +++|+||.+||+|++.+++++++|+|+++++++||+.|+
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~----------- 149 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR----------- 149 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcC-----------
Confidence 999999998764 3 59999999999997 567999999999999999999999999999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027418 172 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 217 (223)
Q Consensus 172 ~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~ 217 (223)
++|+++||++++.+||..+.++|..++++++|++|+++|++...
T Consensus 150 --~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~ 193 (198)
T 1ryp_K 150 --PDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVD 193 (198)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEEC
T ss_pred --CCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEec
Confidence 69999999999999999999999999999999999999977554
No 11
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3.2e-45 Score=304.75 Aligned_cols=194 Identities=15% Similarity=0.234 Sum_probs=184.5
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHH-----hc
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQH-----QH 85 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~ 85 (223)
++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|++||..+|++.+.++++.+++.|+. .+
T Consensus 4 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (233)
T 1ryp_N 4 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADA 83 (233)
T ss_dssp CCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTT
T ss_pred cccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhc
Confidence 3556999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CCCCCHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCC
Q 027418 86 NKQMSCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPS 163 (223)
Q Consensus 86 ~~~~~~~~la~~i~~~~~~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~ 163 (223)
+++++++.+++++++.+|.+| ++||++++||||+|++++|+||.+||+|++.+++++++|+|+++++++||+.|+
T Consensus 84 ~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--- 160 (233)
T 1ryp_N 84 EEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD--- 160 (233)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS---
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhc---
Confidence 999999999999999999877 789999999999998767999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEEE
Q 027418 164 PLLLPAQDAVT-----PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD-GIHREY 217 (223)
Q Consensus 164 ~~~~~~~~~~~-----~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~-g~~~~~ 217 (223)
+ +|+++||++++++||..+.++|..++++++|++|+++ |++...
T Consensus 161 ----------~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~ 210 (233)
T 1ryp_N 161 ----------RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKK 210 (233)
T ss_dssp ----------SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEE
T ss_pred ----------cccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcC
Confidence 6 8999999999999999999999999999999999999 876543
No 12
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=3.5e-45 Score=301.78 Aligned_cols=193 Identities=23% Similarity=0.305 Sum_probs=183.6
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHH-hcCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQH-QHNKQM 89 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~ 89 (223)
++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+. .+++++
T Consensus 4 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (219)
T 1iru_N 4 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSY 83 (219)
T ss_dssp CCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred CccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 90 SCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 90 ~~~~la~~i~~~~~~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+++.+++.+++.+|.+| ++||++++|+||+|++ +|+||.+||+|++.+++++++|+|+++++++||+.|+
T Consensus 84 ~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 155 (219)
T 1iru_N 84 SPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLE------- 155 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcC-------
Confidence 99999999999999887 8999999999999975 6999999999999999999999999999999999976
Q ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027418 168 PAQDAVT--PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 217 (223)
Q Consensus 168 ~~~~~~~--~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~ 217 (223)
+ +|+++||++++.+||..+.++|..++++++|++|+++|++...
T Consensus 156 ------~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~ 201 (219)
T 1iru_N 156 ------KQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEG 201 (219)
T ss_dssp ------SCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred ------CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcC
Confidence 5 9999999999999999999999999999999999999976544
No 13
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.4e-44 Score=295.24 Aligned_cols=192 Identities=22% Similarity=0.300 Sum_probs=183.2
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++++|.+|. ||++++|+||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~-------------~~ 146 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR-------------EG 146 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCC-------------TT
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcC-------------CC
Confidence 999999998775 9999999999998677999999999999999999999999999999999976 69
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeecc
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELR 221 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~~ 221 (223)
|+++||++++.+||..+.++|..++++++|++|+++|++++.++.+
T Consensus 147 ~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ 192 (205)
T 1iru_H 147 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGD 192 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGG
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChH
Confidence 9999999999999999999999899999999999999987777653
No 14
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.8e-44 Score=308.17 Aligned_cols=195 Identities=22% Similarity=0.251 Sum_probs=182.6
Q ss_pred cccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027418 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
..+.+|||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.+++++
T Consensus 70 ~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~i 149 (287)
T 3nzj_K 70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERI 149 (287)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCC
Q 027418 90 SCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPA 169 (223)
Q Consensus 90 ~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~ 169 (223)
+++.+++.+++++|.+|.+||++++||||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 150 sv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~--------- 220 (287)
T 3nzj_K 150 SVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK--------- 220 (287)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCC---------
T ss_pred CHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhc---------
Confidence 99999999999999998889999999999997777999999999999999999999999999999999976
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027418 170 QDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 217 (223)
Q Consensus 170 ~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~ 217 (223)
++|+++||++++++||..+.++|..++++++|++|+++|+++..
T Consensus 221 ----~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~ 264 (287)
T 3nzj_K 221 ----WDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHG 264 (287)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEE
T ss_pred ----CCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeC
Confidence 69999999999999999999999999999999999999976653
No 15
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.4e-44 Score=294.49 Aligned_cols=190 Identities=21% Similarity=0.373 Sum_probs=179.7
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hhhc-CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCC
Q 027418 95 GQLLSNTL-YYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 95 a~~i~~~~-~~~r-~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~ 172 (223)
++++++.+ +..+ .+||++++|+||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~------------ 148 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT------------ 148 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhccc------------
Confidence 99998876 5533 469999999999998777999999999999999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027418 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 217 (223)
Q Consensus 173 ~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~ 217 (223)
++|+++||++++.+||..+.++|..++++++|++|+++|++..+
T Consensus 149 -~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~ 192 (201)
T 1iru_K 149 -PTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLD 192 (201)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCC
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEee
Confidence 69999999999999999999999999999999999999987654
No 16
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=6.2e-44 Score=291.23 Aligned_cols=187 Identities=26% Similarity=0.319 Sum_probs=179.3
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+||++|++++++++||..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.+|.+||++++|+||||++ +|+||.+||+|++.++++.|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~-------------~~ 146 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKR-GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS-------------YD 146 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSS-SEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC-------------TT
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCC-CCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCC-------------CC
Confidence 999999999888899999999999974 5999999999999999999999999999999999966 69
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
||++||++++.+||..+.++|..++++++|++|+++|++..
T Consensus 147 ~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l 187 (204)
T 1iru_L 147 LEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRV 187 (204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEe
Confidence 99999999999999999999988999999999999997654
No 17
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=4.7e-44 Score=293.65 Aligned_cols=188 Identities=22% Similarity=0.268 Sum_probs=180.5
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+||++|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.+|..||++++|+||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 147 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK-------------WD 147 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCC-------------TT
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCC-------------CC
Confidence 99999999988779999999999997767999999999999999999999999999999999976 69
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
||++||++++++||..+.++|..++++++|++|+++|++..
T Consensus 148 ~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~ 188 (212)
T 1ryp_L 148 LSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH 188 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEE
Confidence 99999999999999999999999999999999999997654
No 18
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2e-44 Score=301.68 Aligned_cols=196 Identities=19% Similarity=0.248 Sum_probs=179.5
Q ss_pred ccCC-CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027418 11 YDNN-GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 11 ~~~~-gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
++++ |+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|++||+.+|++.+.++++.+++.|++.+++++
T Consensus 25 av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~ 103 (243)
T 1ryp_A 25 ATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDM 103 (243)
T ss_dssp HTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4778 9999999999999999999999 6677888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCC
Q 027418 90 SCPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 90 ~~~~la~~i~~~~--~~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
+++.+++.+++++ |.+| +|||+|++||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+.++.
T Consensus 104 ~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~- 182 (243)
T 1ryp_A 104 PCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI- 182 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCS-
T ss_pred CHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhccc-
Confidence 9999999999999 7777 7999999999999986779999999999999999999999999999999999762000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q 027418 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 214 (223)
Q Consensus 166 ~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~ 214 (223)
...++|+++||++++++||..+.++| .++++++|++|+++|.+
T Consensus 183 -----~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~ 225 (243)
T 1ryp_A 183 -----DHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFF 225 (243)
T ss_dssp -----SSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEE
T ss_pred -----ccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeE
Confidence 00019999999999999999999999 68999999999999843
No 19
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.5e-43 Score=299.04 Aligned_cols=189 Identities=23% Similarity=0.323 Sum_probs=175.7
Q ss_pred CcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCC
Q 027418 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ 88 (223)
Q Consensus 9 ~~~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (223)
+.++++|+|+|||+++||||||+|+|.+.|.++..++.+||++|+++++|++||..+|++.+.++++.+++.|++.++++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCC
Q 027418 89 MSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP 168 (223)
Q Consensus 89 ~~~~~la~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~ 168 (223)
++++.+++.+++.+|.++ +||++++||||+|+++ |+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 103 ~~v~~~a~~l~~~l~~~~-~~~gv~llvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------- 172 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK-------- 172 (261)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--------
T ss_pred CCHHHHHHHHHHHHHHhc-CcccEEEEEEEEeCCC-CEEEEECCCccEEecCeEEeccchHHHHHHHHHHhc--------
Confidence 999999999999988654 6999999999999865 999999999999999999999999999999999965
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027418 169 AQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 212 (223)
Q Consensus 169 ~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g 212 (223)
++|+++||++++.+||..+.++|..++++++|++|+++|
T Consensus 173 -----~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 173 -----QDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp -----SSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred -----cCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence 699999999999999999999999999999999999999
No 20
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.5e-43 Score=294.77 Aligned_cols=187 Identities=19% Similarity=0.302 Sum_probs=178.5
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 79999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++ +||++++||||+|++ +|+||.+||+|++.+++++|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~~-~p~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 145 (234)
T 3unf_H 81 RILRQTLFRYQ-GHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ-------------PN 145 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCC-------------SS
T ss_pred HHHHHHHHhcC-CCccEEEEEEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccC-------------CC
Confidence 99999998754 699999999999985 5999999999999999999999999999999999965 69
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 217 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~ 217 (223)
|+++||++++.+||..+.++|..++++++|++|+++|++...
T Consensus 146 ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~ 187 (234)
T 3unf_H 146 MTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQR 187 (234)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeC
Confidence 999999999999999999999999999999999999987654
No 21
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.1e-43 Score=297.77 Aligned_cols=193 Identities=18% Similarity=0.278 Sum_probs=180.2
Q ss_pred cCC-CCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 12 DNN-GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 12 ~~~-gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+++ |+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||..+|++.+.++++.+++.|+..++++++
T Consensus 32 v~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 110 (246)
T 1iru_A 32 INQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIP 110 (246)
T ss_dssp HHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 455 9999999999999999999999 56788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~--~~~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++++ |.++ +|||+|++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 111 ~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~------ 184 (246)
T 1iru_A 111 VDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK------ 184 (246)
T ss_dssp HHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhc------
Confidence 999999999996 5555 789999999999998677999999999999999999999999999999999965
Q ss_pred CCCCCCCC--CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEee
Q 027418 167 LPAQDAVT--PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 219 (223)
Q Consensus 167 ~~~~~~~~--~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~ 219 (223)
+ +|+++||++++++||..+.++| .++++++|++|+++|+.++.++
T Consensus 185 -------~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~ 231 (246)
T 1iru_A 185 -------KKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILT 231 (246)
T ss_dssp -------SCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECC
T ss_pred -------ccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECC
Confidence 6 9999999999999999999999 7899999999999998665554
No 22
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=4.3e-43 Score=289.98 Aligned_cols=187 Identities=22% Similarity=0.290 Sum_probs=178.3
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++.+++.+||++|+++++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++ +||++++|+||+|++ +|+||.+||+|++.+++++|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 145 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK-------------QD 145 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC-------------SS
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeCC-CCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCC-------------CC
Confidence 99999998764 799999999999975 5999999999999999999999999999999999976 69
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG-IHREY 217 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g-~~~~~ 217 (223)
|+++||++++++||..+.++|..++++++|++|+++| ++..+
T Consensus 146 ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~ 188 (222)
T 1ryp_I 146 LTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLR 188 (222)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEe
Confidence 9999999999999999999999899999999999999 87544
No 23
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.5e-43 Score=296.48 Aligned_cols=190 Identities=21% Similarity=0.257 Sum_probs=178.3
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|..+.+++.+||++|+++++|++||..+|++.+.++++.+++.|+..+++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (244)
T 1ryp_C 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPV 107 (244)
T ss_dssp HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 67899999999999999999999999977668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 92 PAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~i~~~~~~~----r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++.. +.|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 180 (244)
T 1ryp_C 108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK------- 180 (244)
T ss_dssp HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhh-------
Confidence 99999999999543 3789999999999996677999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc--CCCeE
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN--KDGIH 214 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~--~~g~~ 214 (223)
++|+++||++++++||..+.++|..++++++|++|+ ++|..
T Consensus 181 ------~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~ 223 (244)
T 1ryp_C 181 ------DDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGE 223 (244)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSS
T ss_pred ------cCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCc
Confidence 699999999999999999999955578999999999 99863
No 24
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.4e-43 Score=299.45 Aligned_cols=189 Identities=20% Similarity=0.213 Sum_probs=180.5
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|++||..+|++.+.++++.+++.|+..+++++++
T Consensus 28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (261)
T 1iru_C 28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPC 107 (261)
T ss_dssp HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 67899999999999999999999999988887779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 92 PAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++++|.++ .|||+|++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 180 (261)
T 1iru_C 108 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK------- 180 (261)
T ss_dssp HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhc-------
Confidence 999999999997654 789999999999997677999999999999999999999999999999999965
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027418 168 PAQDAVT-PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 213 (223)
Q Consensus 168 ~~~~~~~-~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~ 213 (223)
+ +|+++||++++++||..+.++|..++++++|++|+++|.
T Consensus 181 ------~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~ 221 (261)
T 1iru_C 181 ------EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG 221 (261)
T ss_dssp ------TTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSS
T ss_pred ------cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCC
Confidence 7 999999999999999999999999999999999999985
No 25
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.7e-43 Score=293.10 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=176.0
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++++++++||..+|++.+.++++.+++.|+.++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI 109 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 678999999999999999999999997 5677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 92 PAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++++|..+ .|||++++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 110 ~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~------- 181 (233)
T 1yar_A 110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK------- 181 (233)
T ss_dssp HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhc-------
Confidence 999999999997543 589999999999997 45999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 213 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~ 213 (223)
++|+++||++++++||..+.++|. ++++++|++|+++|.
T Consensus 182 ------~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~ 220 (233)
T 1yar_A 182 ------ENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNK 220 (233)
T ss_dssp ------TTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSC
T ss_pred ------cCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCC
Confidence 699999999999999999999997 789999999999984
No 26
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.5e-43 Score=294.86 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=176.8
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+.|..+ +++.+||++|+++++|++||..+|++.+.++++.+++.|+..+++++++
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 101 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV 101 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 678999999999999999999999999776 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----------CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCC
Q 027418 92 PAMGQLLSNTLYYKR----------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 92 ~~la~~i~~~~~~~r----------~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~ 161 (223)
+.+++.+++++|.++ .|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~- 180 (242)
T 1ryp_E 102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH- 180 (242)
T ss_dssp HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhc-
Confidence 999999999986532 579999999999996677999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027418 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 213 (223)
Q Consensus 162 ~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~ 213 (223)
++|+++||++++++||..+.++ ..++++++|++|+++|.
T Consensus 181 ------------~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~ 219 (242)
T 1ryp_E 181 ------------SSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDG 219 (242)
T ss_dssp ------------TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTE
T ss_pred ------------cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCC
Confidence 6999999999999999999998 56789999999999997
No 27
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.5e-43 Score=293.33 Aligned_cols=188 Identities=17% Similarity=0.228 Sum_probs=176.0
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||..+|++.+.++++.+++.|+.++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 106 (233)
T 1iru_B 28 VAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPT 106 (233)
T ss_dssp HHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 6689999999999999999999998 467788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 92 PAMGQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~i~~~~~~--~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++. ++ +|||++++||||||+ ++|+||.+||+|++.+++++++|+|+++++++||+.|+
T Consensus 107 ~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~------- 178 (233)
T 1iru_B 107 AQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN------- 178 (233)
T ss_dssp HHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhc-------
Confidence 9999999999944 43 689999999999995 45999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 215 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~ 215 (223)
++|+++||++++++||..+.++| .++++++|++|+++|++.
T Consensus 179 ------~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~ 219 (233)
T 1iru_B 179 ------EDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRR 219 (233)
T ss_dssp ------TTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEE
T ss_pred ------cCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEE
Confidence 69999999999999999999999 678999999999999554
No 28
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=9.2e-43 Score=283.20 Aligned_cols=189 Identities=22% Similarity=0.300 Sum_probs=178.3
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeC-eEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 174 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~ 174 (223)
+++++.+|.+| +||++++||||+|++++|+||. |+|++.++. ++++|+|+++++++||+.|+ +
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~-------------~ 144 (199)
T 3unf_N 81 NVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYK-------------P 144 (199)
T ss_dssp HHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCC-------------S
T ss_pred HHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcC-------------C
Confidence 99999998765 5999999999999877799999 999976655 77789999999999999966 6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeec
Q 027418 175 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMEL 220 (223)
Q Consensus 175 ~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~~ 220 (223)
+|+++||++++.+||..+.++|..++++++|++|+++|++++.++.
T Consensus 145 ~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~ 190 (199)
T 3unf_N 145 GMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 190 (199)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCc
Confidence 9999999999999999999999999999999999999998877754
No 29
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1e-42 Score=290.94 Aligned_cols=189 Identities=17% Similarity=0.246 Sum_probs=175.6
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|+..++++++
T Consensus 24 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (241)
T 1ryp_D 24 AVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVT 103 (241)
T ss_dssp HHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 37789999999999999999999999998777669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCC-CCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCC
Q 027418 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNE-GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 91 ~~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~-~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
++.+++.+++++|.++ .|||++++||||||++ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+.
T Consensus 104 v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~---- 179 (241)
T 1ryp_D 104 VEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDR---- 179 (241)
T ss_dssp HHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCT----
T ss_pred HHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhc----
Confidence 9999999999998643 5799999999999985 679999999999999999999999999999999999720
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027418 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 212 (223)
Q Consensus 166 ~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g 212 (223)
..++|+++||++++++||..+.+ .++++++|++|+++|
T Consensus 180 ------~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~ 217 (241)
T 1ryp_D 180 ------KEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDS 217 (241)
T ss_dssp ------TSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTT
T ss_pred ------ccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCC
Confidence 02699999999999999999986 678999999999997
No 30
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.4e-42 Score=289.09 Aligned_cols=186 Identities=23% Similarity=0.336 Sum_probs=177.2
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027418 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~i~~~~~~~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++ +||++++|+||+|+++ |+||.+||+|++.+++++|+|+|++.++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 145 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDVTG-PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR-------------PD 145 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECSSC-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCC-------------TT
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcCCC-CEEEEECCCCCEEecCEEEECCchHHHHHHHHHhcc-------------CC
Confidence 99999998765 5999999999999755 999999999999999999999999999999999976 69
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027418 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~ 216 (223)
|+++||++++.+||..+.++|..++++++|++|+++|++..
T Consensus 146 ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~ 186 (234)
T 1iru_I 146 MEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFL 186 (234)
T ss_dssp CCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEE
Confidence 99999999999999999999998999999999999998644
No 31
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=6.8e-43 Score=292.06 Aligned_cols=186 Identities=18% Similarity=0.215 Sum_probs=175.6
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+.|..+ +++.+||++|++++++++||..+|++.+.++++.+++.|+..+++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV 109 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 678999999999999999999999999776 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhhc-------CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCC
Q 027418 92 PAMGQLLSNTL--YYKR-------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSP 162 (223)
Q Consensus 92 ~~la~~i~~~~--~~~r-------~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~ 162 (223)
+.+++.+++++ |.++ .|||++++||||+| +++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-- 186 (241)
T 1iru_E 110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH-- 186 (241)
T ss_dssp HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhc--
Confidence 99999999999 4333 57999999999999 566999999999999999999999999999999999966
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027418 163 SPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 213 (223)
Q Consensus 163 ~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~ 213 (223)
++|+++||++++++||..+.++ ..++++++|++|+++|.
T Consensus 187 -----------~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~ 225 (241)
T 1iru_E 187 -----------KSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN 225 (241)
T ss_dssp -----------TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC
T ss_pred -----------cCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC
Confidence 6999999999999999999998 66899999999999997
No 32
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.4e-42 Score=290.79 Aligned_cols=194 Identities=20% Similarity=0.214 Sum_probs=177.4
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.++|.++.+ ..+||++|+++++|++||..+|++.+.++++.+++.|+.+++++++
T Consensus 26 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 104 (244)
T 1ryp_G 26 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIP 104 (244)
T ss_dssp HHHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 367899999999999999999999999977654 4599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh--c--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYK--R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~--r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++.. + +|||++++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.++.
T Consensus 105 v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~----- 178 (244)
T 1ryp_G 105 IPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDH----- 178 (244)
T ss_dssp HHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhh-----
Confidence 999999999999543 2 589999999999996 459999999999999999999999999999999997211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC---CCeEEE
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK---DGIHRE 216 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~---~g~~~~ 216 (223)
|.++||++||++++++||..+.++|..++++++|++|++ +|.+..
T Consensus 179 -----~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~ 226 (244)
T 1ryp_G 179 -----HPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 226 (244)
T ss_dssp -----CTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEE
T ss_pred -----cCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeee
Confidence 236999999999999999999999998899999999998 787754
No 33
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.9e-42 Score=295.46 Aligned_cols=192 Identities=21% Similarity=0.248 Sum_probs=180.8
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.++++++
T Consensus 61 Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~is 140 (294)
T 1q5r_H 61 LAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 140 (294)
T ss_dssp CSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc---CCCeeEEEEEEEEcCCCC-----eEEEEEcCCCCeeee--CeEEEcCchhhHHHHHhcccC
Q 027418 91 CPAMGQLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLK 160 (223)
Q Consensus 91 ~~~la~~i~~~~~~~r---~~P~~v~~ilaG~d~~~~-----~~ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~ 160 (223)
++.+++.+++++|.++ .+||+|++||||||++++ |+||.+||+|++.++ +++++|+|+++++++||+.|+
T Consensus 141 v~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~ 220 (294)
T 1q5r_H 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 220 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhcc
Confidence 9999999999998754 689999999999998756 999999999999999 899999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCc--E-----EEEEEcCCCeEE
Q 027418 161 SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK--L-----EIVVLNKDGIHR 215 (223)
Q Consensus 161 ~~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~--i-----ei~ii~~~g~~~ 215 (223)
++|+++||++++++||..+.++|..+++. + +|++|+++|++.
T Consensus 221 -------------~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~ 269 (294)
T 1q5r_H 221 -------------PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 269 (294)
T ss_dssp -------------SSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred -------------CCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEE
Confidence 69999999999999999999999887653 6 999999998765
No 34
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.1e-42 Score=293.04 Aligned_cols=186 Identities=12% Similarity=0.097 Sum_probs=175.7
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+.|.++ .++.+||++|+++++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus 30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 108 (254)
T 1iru_G 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPL 108 (254)
T ss_dssp HHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 678999999999999999999999999776 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 92 PAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++++|.++ +|||+|++||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+
T Consensus 109 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 181 (254)
T 1iru_G 109 KHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM------- 181 (254)
T ss_dssp HHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCG-------
T ss_pred HHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhcc-------
Confidence 999999999997654 689999999999996677999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 211 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~ 211 (223)
++|+++||+++++++|..+.++|..++.+++|++|+++
T Consensus 182 ------~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~ 219 (254)
T 1iru_G 182 ------KEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGEL 219 (254)
T ss_dssp ------GGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred ------CCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcC
Confidence 69999999999999999998888767889999999988
No 35
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=7.6e-42 Score=284.78 Aligned_cols=187 Identities=22% Similarity=0.249 Sum_probs=176.2
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---CCCeeEEEEEEEEcCCCC-----eEEEEEcCCCCeeee--CeEEEcCchhhHHHHHhcccCCCCCC
Q 027418 96 QLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 96 ~~i~~~~~~~r---~~P~~v~~ilaG~d~~~~-----~~ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
+.+++++|.++ .|||+|++||||||++++ |+||.+||+|++.++ +++|+|+|+++++++||+.|+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~----- 155 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS----- 155 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC-----
Confidence 99999998754 789999999999998866 999999999999999 899999999999999999965
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCc--E-----EEEEEcCCCeEE
Q 027418 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK--L-----EIVVLNKDGIHR 215 (223)
Q Consensus 166 ~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~--i-----ei~ii~~~g~~~ 215 (223)
++|+++||++++++||..+.++|..+++. + +|++|+++|++.
T Consensus 156 --------~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~ 204 (235)
T 1q5q_H 156 --------PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 204 (235)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred --------CCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEE
Confidence 69999999999999999999999877653 2 999999998664
No 36
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=3.4e-42 Score=288.99 Aligned_cols=185 Identities=18% Similarity=0.278 Sum_probs=173.6
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+.| ++..++.+||++|+++++|+++|..+|++.+.++++.+++.|+..++++++
T Consensus 25 av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (248)
T 1iru_D 25 AVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVT 103 (248)
T ss_dssp HHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3678999999999999999999999998 567788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~r----~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++..+ .|||+|++||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+
T Consensus 104 v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~------ 177 (248)
T 1iru_D 104 VEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT------ 177 (248)
T ss_dssp HHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCC------
T ss_pred HHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhc------
Confidence 9999999999996543 579999999999996667999999999999999999999999999999999965
Q ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027418 167 LPAQDAVTPL--SEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 212 (223)
Q Consensus 167 ~~~~~~~~~l--s~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g 212 (223)
++| +++||++++++||..+.+ .++++++|++|+++|
T Consensus 178 -------~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g 215 (248)
T 1iru_D 178 -------DEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ 215 (248)
T ss_dssp -------SSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS
T ss_pred -------ccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC
Confidence 699 999999999999998887 368899999999998
No 37
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.7e-42 Score=293.26 Aligned_cols=192 Identities=19% Similarity=0.323 Sum_probs=177.6
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|+++++|+++|+.+|++.+.++++.+++.|++.++++++
T Consensus 34 av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~ 112 (264)
T 3h4p_A 34 AVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEIS 112 (264)
T ss_dssp HHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence 4568999999999999999999999997 667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh--c--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYK--R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~--r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++.+ + +|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 113 v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------ 185 (264)
T 3h4p_A 113 IEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR------ 185 (264)
T ss_dssp HHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhcc------
Confidence 999999999999643 2 689999999999996 45999999999999999999999999999999999966
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEee
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 219 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~~~~~~ 219 (223)
++|+++||++++++||..+.++ .++++++|++|++++..++.++
T Consensus 186 -------~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~ 229 (264)
T 3h4p_A 186 -------DDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIP 229 (264)
T ss_dssp -------TTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECC
Confidence 6999999999999999999986 6889999999999876655554
No 38
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=6.6e-42 Score=284.74 Aligned_cols=184 Identities=20% Similarity=0.242 Sum_probs=171.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+.|. .++.+||++|++++++++||..+|++.+.++++.+++.|+..++++++
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~~~l---~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (233)
T 1ryp_F 27 AIKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLA 103 (233)
T ss_dssp HHHTSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcCCCEEEEEcCCEEEEEEEecccccc---ccccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 36789999999999999999999999884 358899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~----r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++.+ ..|||+|++||||||++ +|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 104 v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~------ 176 (233)
T 1ryp_F 104 VERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD------ 176 (233)
T ss_dssp HHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCC-cCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhc------
Confidence 999999999999542 26899999999999975 5999999999999999999999999999999999976
Q ss_pred CCCCCCCC--CC--CHHHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCCC
Q 027418 167 LPAQDAVT--PL--SEAEAVDLVKTCFASATERD-IYTGDKLEIVVLNKDG 212 (223)
Q Consensus 167 ~~~~~~~~--~l--s~~eai~~~~~~l~~~~~~d-~~~~~~iei~ii~~~g 212 (223)
+ +| +++||+++++++|..+. +| ..++++++|++|++++
T Consensus 177 -------~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~ 219 (233)
T 1ryp_F 177 -------TFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDT 219 (233)
T ss_dssp -------HHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTE
T ss_pred -------cccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCC
Confidence 5 89 99999999999999999 77 5689999999999994
No 39
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.8e-42 Score=293.30 Aligned_cols=188 Identities=20% Similarity=0.211 Sum_probs=174.4
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.++|.++. +..+||++|+++++|+++|+.+|++.|.++++.+++.|++.++++++
T Consensus 30 Av~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~ 108 (288)
T 3nzj_F 30 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIP 108 (288)
T ss_dssp HHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 67789999999999999999999999997755 47799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~~----r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++.+ ++|||+|++||||||+++ |+||.+||+|++.+++++++|+|+++++++||+.++.
T Consensus 109 v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~----- 182 (288)
T 3nzj_F 109 IPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDH----- 182 (288)
T ss_dssp HHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCC-CEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccc-----
Confidence 999999999999654 278999999999999855 9999999999999999999999999999999999211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 210 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~ 210 (223)
|.++|+++||++++++||..+.+++..++.+++|.+|++
T Consensus 183 -----~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 183 -----HPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp -----CTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred -----cCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 226999999999999999999999887888999999999
No 40
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=7e-42 Score=289.39 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=172.7
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+.|. .++.+||++|+++++|++||..+|++.+.++++.+++.|++.+++++++
T Consensus 29 v~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v 105 (263)
T 1iru_F 29 VKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV 105 (263)
T ss_dssp HHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 6679999999999999999999999984 3588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 92 PAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~i~~~~~~~----r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++++|.. ..|||+|++||||||++ +|+||.+||+|++.+++++++|+|+++++++||+.|+.
T Consensus 106 ~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~------ 178 (263)
T 1iru_F 106 SRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM-GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE------ 178 (263)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhhcccccccceEEEEEEEEcCC-CCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcc------
Confidence 99999999999643 26899999999999974 59999999999999999999999999999999999761
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCCC
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERD-IYTGDKLEIVVLNKDG 212 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d-~~~~~~iei~ii~~~g 212 (223)
.++|+++||++++++||..+.++| ..++++++|++|++++
T Consensus 179 -----~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~ 219 (263)
T 1iru_F 179 -----FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL 219 (263)
T ss_dssp -----HTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE
T ss_pred -----cCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC
Confidence 129999999999999999999999 4789999999999994
No 41
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.6e-41 Score=285.25 Aligned_cols=186 Identities=18% Similarity=0.236 Sum_probs=172.8
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHH-HHHhcCCCCC
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLI-YQHQHNKQMS 90 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~ 90 (223)
+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|++||..+|++.+.++++.+++. |+..++.+++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (250)
T 1ryp_B 28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP 106 (250)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6789999999999999999999998 6678888999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHh----hcCCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCC
Q 027418 91 CPAMGQLLSNTLYY----KRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~i~~~~~~----~r~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++. .++|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 107 ~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------ 180 (250)
T 1ryp_B 107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWN------ 180 (250)
T ss_dssp HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhc------
Confidence 99998888888743 23689999999999998777999999999999999999999999999999999966
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027418 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 212 (223)
Q Consensus 167 ~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g 212 (223)
++|+++||++++++||..+.+++. ++++++|++|++++
T Consensus 181 -------~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 181 -------DELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN 218 (250)
T ss_dssp -------TTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred -------cCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence 699999999999999999998764 78999999999974
No 42
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=4.9e-41 Score=281.65 Aligned_cols=186 Identities=17% Similarity=0.239 Sum_probs=173.0
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+.+. +..++.+||++|+++++++++|..+|++.+.++++.+++.|++.+++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITV 109 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCccc-cccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 6789999999999999999999999874 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeCeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 92 PAMGQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~i~~~~~~--~r--~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++. ++ .|||++++||||+| ++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 110 ~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 180 (246)
T 1j2p_A 110 KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR------- 180 (246)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhc-------
Confidence 9999999999954 33 67999999999999 55999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc-CC-CeE
Q 027418 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN-KD-GIH 214 (223)
Q Consensus 168 ~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~-~~-g~~ 214 (223)
++|+++||++++++||..+.++ ..++++++|++|+ ++ +.+
T Consensus 181 ------~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~ 222 (246)
T 1j2p_A 181 ------DDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFK 222 (246)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCE
T ss_pred ------cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceE
Confidence 6999999999999999999997 7788999999999 64 444
No 43
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.5e-41 Score=290.83 Aligned_cols=191 Identities=21% Similarity=0.271 Sum_probs=160.2
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027418 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|++||..+|++.+.++++.+++.|+..+++++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 78899999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc---CCCeeEEEEEEEEcCCCC-----eEEEEEcCCCCee--eeCeEEEcCchhhHHHHHhcccCC
Q 027418 92 PAMGQLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYE--RVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 92 ~~la~~i~~~~~~~r---~~P~~v~~ilaG~d~~~~-----~~ly~id~~G~~~--~~~~~aiG~g~~~a~~~Le~~~~~ 161 (223)
+.+++.+++++|.++ .+||+|++||||||++++ |+||.+||+|++. +++++|+|+|+++++++||+.|+
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~- 212 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS- 212 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcC-
Confidence 999999999998764 579999999999998766 9999999999998 88999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCc--E-----EEEEEcCCCeEE
Q 027418 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK--L-----EIVVLNKDGIHR 215 (223)
Q Consensus 162 ~~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~--i-----ei~ii~~~g~~~ 215 (223)
++|+++||++++++||..+.++|..+++. + +|++|+++|++.
T Consensus 213 ------------~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~ 261 (291)
T 2jay_A 213 ------------QVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD 261 (291)
T ss_dssp ------------GCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEE
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEE
Confidence 69999999999999999999999877653 2 699999998664
No 44
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.5e-40 Score=278.61 Aligned_cols=181 Identities=17% Similarity=0.164 Sum_probs=163.3
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcC-CCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (223)
++++|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++.++ +++
T Consensus 23 av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i 94 (248)
T 3mi0_A 23 GIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDV 94 (248)
T ss_dssp HHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 356899999999999999999999 35789999999999999999999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHH---HhhcCCCeeEEEEEEEEcC---CCCeEEEEEcCCCCeee-eCeEEEcCchhhHHHHHhcccCCC
Q 027418 90 SCPAMGQLLSNTL---YYKRFFPYYSFNVLGGLDN---EGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSP 162 (223)
Q Consensus 90 ~~~~la~~i~~~~---~~~r~~P~~v~~ilaG~d~---~~~~~ly~id~~G~~~~-~~~~aiG~g~~~a~~~Le~~~~~~ 162 (223)
+++.+++.+++.+ |++++|||+|++||||||+ +++|+||.+||+|++.+ ++++|+|+|++.++++||+.|+
T Consensus 95 ~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~-- 172 (248)
T 3mi0_A 95 TGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA-- 172 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcC--
Confidence 9999999999654 5556899999999999998 46799999999999994 9999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------hcccccCCcEEEEEEcCCCe
Q 027418 163 SPLLLPAQDAVTPLSEAEAVDLVKTCFASAT-------ERDIYTGDKLEIVVLNKDGI 213 (223)
Q Consensus 163 ~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~-------~~d~~~~~~iei~ii~~~g~ 213 (223)
++|+++||++++++||..+. +++ .++.+++|++|+++|.
T Consensus 173 -----------~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~ 218 (248)
T 3mi0_A 173 -----------ENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRP 218 (248)
T ss_dssp -----------TTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSS
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCC
Confidence 69999999999999999998 554 5778999999999983
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=5e-40 Score=277.43 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=164.6
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHHhcC-CCC
Q 027418 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (223)
Q Consensus 11 ~~~~gttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (223)
++++|+|+|||+++||||||+|+| +++.+||++|+++++|+++|..+|++.|.++++.+++.|.+.++ +++
T Consensus 23 av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i 94 (259)
T 1q5q_A 23 GIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDV 94 (259)
T ss_dssp HHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 467899999999999999999998 36789999999999999999999999999999999999999987 599
Q ss_pred CHHHHHHHHHHHH---HhhcCCCeeEEEEEEEEc--C-CCCeEEEEEcCCCCee-eeCeEEEcCchhhHHHHHhcccCCC
Q 027418 90 SCPAMGQLLSNTL---YYKRFFPYYSFNVLGGLD--N-EGKGCVYTYDAVGSYE-RVGYSSQGSGSTLIMPFLDNQLKSP 162 (223)
Q Consensus 90 ~~~~la~~i~~~~---~~~r~~P~~v~~ilaG~d--~-~~~~~ly~id~~G~~~-~~~~~aiG~g~~~a~~~Le~~~~~~ 162 (223)
+++.+++.+++.+ |+.++|||+|++|||||| + +++|+||.+||+|++. +++++++|+|++.++++||+.|+
T Consensus 95 ~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~-- 172 (259)
T 1q5q_A 95 TGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR-- 172 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhcc--
Confidence 9999999999963 666789999999999999 3 5669999999999999 78999999999999999999966
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-----hcccccCCcEEEEEEcCCC
Q 027418 163 SPLLLPAQDAVTPLSEAEAVDLVKTCFASAT-----ERDIYTGDKLEIVVLNKDG 212 (223)
Q Consensus 163 ~~~~~~~~~~~~~ls~~eai~~~~~~l~~~~-----~~d~~~~~~iei~ii~~~g 212 (223)
++|+++||++++++||..+. ++|. ++++++|++|+++|
T Consensus 173 -----------~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~ 215 (259)
T 1q5q_A 173 -----------ADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSR 215 (259)
T ss_dssp -----------TTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTS
T ss_pred -----------CCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCC
Confidence 69999999999999999998 8898 89999999999995
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=7.2e-36 Score=239.26 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=150.0
Q ss_pred CCCCeEEEEEcCCEEEEeEecccccCce-eeecCcCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027418 13 NNGGTCVAIAGADYCVTAADTRMSTGYS-ILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 13 ~~gttii~i~~~dgVviaaD~r~~~g~~-~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| +++++++++|..+|++.+.++++.+++.|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 5699999999999999999999999888 999999999999 999999999999999999999999999887 3 22
Q ss_pred HHHHHHHHHHHHHhhc-CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeee--CeEEEcCchhhHHHHHhcccCCCCCCCC
Q 027418 91 CPAMGQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 91 ~~~la~~i~~~~~~~r-~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+..+ ..+++.+++.+ .|||++++|+| | +|+||.+||+|++.++ ++.|+|+|+++|+++||+.|+
T Consensus 78 ~~~~-~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~------- 144 (180)
T 2z3b_A 78 KRAA-VELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKK------- 144 (180)
T ss_dssp HHHH-HHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHH-------
T ss_pred HHHH-HHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhh-------
Confidence 3333 34566665544 57999999999 3 3899999999999984 899999999999999999976
Q ss_pred CCCCCCC---CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 168 PAQDAVT---PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 168 ~~~~~~~---~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
+ +|+.+|+ +.+||..+.++|..++++++|++|
T Consensus 145 ------~~~~~mt~eel---~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 145 ------HAGESMSASEI---ARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp ------HHGGGCCHHHH---HHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred ------ccCCCCCHHHH---HHHHHHHHHHhcCccCCeEEEEEE
Confidence 5 8999994 679999999999999999999998
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=5.8e-35 Score=232.02 Aligned_cols=167 Identities=20% Similarity=0.242 Sum_probs=148.9
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++++++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999989999999999999 99999999999999999999999999987643 26666
Q ss_pred HHHHHHHHHhhc-CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeC--eEEEcCchhhHHHHHhcccCCCCCCCCCCCC
Q 027418 95 GQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG--YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~i~~~~~~~r-~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~--~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
++. .+.+++++ .+||++++|+| | +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+.
T Consensus 76 ~~l-~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~---------- 139 (171)
T 1m4y_A 76 VEL-AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN---------- 139 (171)
T ss_dssp HHH-HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH----------
T ss_pred HHH-HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc----------
Confidence 665 44666666 46799999998 4 59999999999999987 999999999999999999761
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027418 172 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 172 ~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii 208 (223)
++|+. .+++.+||..+.++|..++++++|+++
T Consensus 140 --~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 140 --TDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp --CCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred --CCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 48997 678999999999999999999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=8.6e-35 Score=231.69 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=150.9
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027418 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 16 ttii~i~~~dgVviaaD~r~~~g~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++++++|..+|++.+.++++.+++.|+. +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999989999999999999 9999999999999999999999999998874 45666
Q ss_pred HHHHHHHHHhhc-CCCeeEEEEEEEEcCCCCeEEEEEcCCCCeeeeC---eEEEcCchhhHHHHHhcccCCCCCCCCCCC
Q 027418 95 GQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG---YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 95 a~~i~~~~~~~r-~~P~~v~~ilaG~d~~~~~~ly~id~~G~~~~~~---~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~ 170 (223)
+..+++.++++| .||+ +.+++|+| +|+||.+||+|++.+++ +.|+|+|+++|+++||+.|+.
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~--------- 140 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN--------- 140 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc---------
Confidence 777888887776 4565 56777787 49999999999999988 999999999999999999762
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q 027418 171 DAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN 209 (223)
Q Consensus 171 ~~~~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~ 209 (223)
++|+.+ +++.+||..+.++|..++++++|++|+
T Consensus 141 ---~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 141 ---TELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp ---CCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred ---CCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 489955 799999999999999999999999985
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=28.20 E-value=1.1e+02 Score=23.76 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q 027418 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 214 (223)
Q Consensus 174 ~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~ 214 (223)
+.+++++|.+++..++..+.++. .++.|.|++..|--
T Consensus 63 ~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G~l 99 (192)
T 3fpw_A 63 THLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNGNT 99 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSCE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCCCE
Confidence 58999999999999999998853 58999999988854
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=24.99 E-value=71 Score=23.40 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q 027418 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 214 (223)
Q Consensus 174 ~~ls~~eai~~~~~~l~~~~~~d~~~~~~iei~ii~~~g~~ 214 (223)
+.+++++|.+++..+...+.++ +.++.|.|++..|--
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~l 46 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNT 46 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCE
Confidence 4689999999999999998875 458999999988754
No 51
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=22.04 E-value=89 Score=18.86 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=18.2
Q ss_pred CCCH--HHHHHHHHHHHHHHHhccc
Q 027418 175 PLSE--AEAVDLVKTCFASATERDI 197 (223)
Q Consensus 175 ~ls~--~eai~~~~~~l~~~~~~d~ 197 (223)
.++. .|.+++|+.||..+.+-+.
T Consensus 21 ~~s~D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 21 GLSSDAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CcCHhHHHHHHHHHHHHHHHcCCCc
Confidence 4454 4889999999999998654
Done!