Query 027419
Match_columns 223
No_of_seqs 110 out of 278
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00178 STI Soybean trypsin in 100.0 2.6E-59 5.7E-64 390.7 20.3 169 32-215 1-172 (172)
2 smart00452 STI Soybean trypsin 100.0 7.8E-59 1.7E-63 387.9 20.8 170 33-217 1-172 (172)
3 PF00197 Kunitz_legume: Trypsi 100.0 2.5E-58 5.5E-63 385.9 18.5 171 32-215 1-176 (176)
4 PF07951 Toxin_R_bind_C: Clost 87.4 3.8 8.1E-05 35.7 8.1 133 30-175 7-158 (214)
5 PF02402 Lysis_col: Lysis prot 65.0 4.3 9.3E-05 26.8 1.4 19 27-45 18-36 (46)
6 COG5341 Uncharacterized protei 58.8 95 0.0021 25.0 8.7 18 95-112 103-120 (132)
7 KOG3858 Ephrin, ligand for Eph 53.0 13 0.00029 32.8 2.9 43 36-80 116-164 (233)
8 PF07172 GRP: Glycine rich pro 46.2 16 0.00034 27.8 2.0 11 33-43 32-42 (95)
9 PF05474 Semenogelin: Semenoge 44.4 11 0.00023 36.9 1.0 15 1-15 1-15 (582)
10 PF08194 DIM: DIM protein; In 43.8 32 0.00069 21.7 2.8 16 1-17 1-16 (36)
11 PF14009 DUF4228: Domain of un 40.6 18 0.00039 28.9 1.8 20 36-55 64-83 (181)
12 COG5510 Predicted small secret 39.7 29 0.00062 22.9 2.2 17 1-17 2-18 (44)
13 COG2824 PhnA Uncharacterized Z 33.6 40 0.00087 26.4 2.5 25 29-53 41-65 (112)
14 PF00879 Defensin_propep: Defe 31.7 41 0.00089 22.9 2.1 17 1-18 1-17 (52)
15 PF11355 DUF3157: Protein of u 30.9 73 0.0016 27.5 3.9 42 1-51 1-45 (199)
16 PRK10220 hypothetical protein; 30.9 49 0.0011 26.0 2.6 23 31-53 42-64 (111)
17 TIGR00686 phnA alkylphosphonat 30.5 51 0.0011 25.9 2.6 23 31-53 41-63 (109)
18 PF09466 Yqai: Hypothetical pr 30.0 40 0.00086 24.5 1.9 21 31-51 24-44 (71)
19 COG3045 CreA Uncharacterized p 29.8 95 0.0021 25.9 4.3 24 32-55 42-65 (165)
20 PF03831 PhnA: PhnA protein; 29.7 25 0.00054 24.4 0.8 20 33-52 2-21 (56)
21 PRK10159 outer membrane phosph 28.8 41 0.0009 30.9 2.3 18 28-45 19-36 (351)
22 PF15284 PAGK: Phage-encoded v 26.3 46 0.00099 23.5 1.6 16 1-16 1-18 (61)
23 COG4851 CamS Protein involved 25.4 89 0.0019 29.0 3.7 35 27-62 24-70 (382)
24 PF10813 DUF2733: Protein of u 25.0 41 0.00088 20.7 1.0 19 29-47 11-29 (32)
25 PF12702 Lipocalin_3: Lipocali 24.3 42 0.00092 25.4 1.2 36 123-164 42-77 (93)
26 PRK15208 long polar fimbrial c 23.7 3.4E+02 0.0074 23.4 7.0 81 41-128 23-107 (228)
27 PF00812 Ephrin: Ephrin; Inte 23.0 54 0.0012 26.8 1.7 21 37-57 101-121 (145)
28 TIGR02588 conserved hypothetic 22.1 1.8E+02 0.0038 23.3 4.4 29 29-57 33-61 (122)
29 KOG3352 Cytochrome c oxidase, 21.4 1.2E+02 0.0025 25.3 3.3 33 136-172 109-147 (153)
30 PF11777 DUF3316: Protein of u 20.4 82 0.0018 24.3 2.2 9 1-9 1-9 (114)
No 1
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=100.00 E-value=2.6e-59 Score=390.70 Aligned_cols=169 Identities=44% Similarity=0.780 Sum_probs=153.4
Q ss_pred ceecCCCCeeccCCCEEEEecccCCCCCceEEecCCCCCCCCceEECCCCCCCCeeEEEEcCC-CCceeecCCceEEEEc
Q 027419 32 PLLDVNGNKVESTLQYHIVSAIWGAGGGGVSLHGGRNGYCPLDVIQLPSAIQWGKKLILSPYD-NSTIVRESTDLNLRFV 110 (223)
Q Consensus 32 ~VlDt~G~~L~~g~~YyIlP~~~g~gGGgl~l~~t~n~~CPl~VvQ~~~~~~~GlPv~Fs~~~-~~~~I~~~t~lnI~F~ 110 (223)
+|+|+|||||++|.+|||+|+++|. ||||++++++|++||++|+|++++..+|+||+|+|++ ++.+|+|+++|||+|.
T Consensus 1 ~VlD~~G~~l~~g~~YyI~p~~~g~-GGGl~l~~~~~~~CPl~VvQ~~~~~~~GlPv~Fs~~~~~~~~I~e~t~lnI~F~ 79 (172)
T cd00178 1 PVLDTDGNPLRNGGRYYILPAIRGG-GGGLTLAATGNETCPLTVVQSPSELDRGLPVKFSPPNPKSDVIRESTDLNIEFD 79 (172)
T ss_pred CcCcCCCCCCcCCCeEEEEEceeCC-CCcEEEcCCCCCCCCCeeEECCCCCCCCeeEEEEeCCCCCCEEECCCcEEEEeC
Confidence 6999999999999999999999995 5999999999999999999999999999999999987 8999999999999999
Q ss_pred cCCCCCCCC-CCCCcEEEeccCCCCcceEEEeCCCCCCCCCCCcCCcEEEEEcCCC-CceEEEcCCCCcccccccceeee
Q 027419 111 GLLSGSKQC-NELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLP-GAYKIVHCPSVCESCVKLCSSVG 188 (223)
Q Consensus 111 ~~~~~~~~C-~~st~W~v~~~d~~~~~~~V~tGg~~g~pg~~t~~~~FkIek~~~~-~~YKLvfCp~~~~~~~~~C~dVG 188 (223)
.. +.| ++|++|+|++.+. .++|+|+|||.+++ +..|||||||+++. +.|||+|||..| ...|+|||
T Consensus 80 ~~----~~c~~~st~W~V~~~~~-~~~~~V~~Gg~~~~----~~~~~FkIek~~~~~~~YKL~~Cp~~~---~~~C~~VG 147 (172)
T cd00178 80 AP----TWCCGSSTVWKVDRDST-PEGLFVTTGGVKGN----TLNSWFKIEKVSEGLNAYKLVFCPSSC---DSKCGDVG 147 (172)
T ss_pred CC----CcCCCCCCEEEEeccCC-ccCeEEEeCCcCCC----cccceEEEEECCCCCCcEEEEEcCCCC---CCceeecc
Confidence 88 556 9999999997655 78999999998875 67899999999863 579999999865 57999999
Q ss_pred EEEccCCceEEEEecCCCCceeEEEEE
Q 027419 189 RFSFEDGVRRLVLVRDDEPAFPVVLIP 215 (223)
Q Consensus 189 i~~~~~g~rrLvl~sd~~~p~~V~F~k 215 (223)
++.+++|.||||| +++ +||.|+|+|
T Consensus 148 i~~d~~g~rrL~l-~~~-~p~~V~F~k 172 (172)
T cd00178 148 IFIDPEGVRRLVL-SDD-NPLVVVFKK 172 (172)
T ss_pred cEECCCCcEEEEE-cCC-CCeEEEEeC
Confidence 9767799999999 764 699999997
No 2
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=100.00 E-value=7.8e-59 Score=387.89 Aligned_cols=170 Identities=38% Similarity=0.675 Sum_probs=152.5
Q ss_pred eecCCCCeeccCCCEEEEecccCCCCCceEEecCCCCCCCCceEECCCCCCCCeeEEEEcCC-CCceeecCCceEEEEcc
Q 027419 33 LLDVNGNKVESTLQYHIVSAIWGAGGGGVSLHGGRNGYCPLDVIQLPSAIQWGKKLILSPYD-NSTIVRESTDLNLRFVG 111 (223)
Q Consensus 33 VlDt~G~~L~~g~~YyIlP~~~g~gGGgl~l~~t~n~~CPl~VvQ~~~~~~~GlPv~Fs~~~-~~~~I~~~t~lnI~F~~ 111 (223)
|+|+|||||++|++|||+|++||. ||||++++++|++||++|+|++++..+|+||+|+|++ ++.+|+|+++|||+|..
T Consensus 1 VlDt~G~~l~~G~~YyI~p~~~g~-GGGl~l~~~~n~~CPl~VvQ~~~~~~~GlPV~Fs~~~~~~~ii~e~t~lnI~F~~ 79 (172)
T smart00452 1 VLDTDGNPLRNGGTYYILPAIRGH-GGGLTLAATGNEICPLTVVQSPNEVDNGLPVKFSPPNPSDFIIRESTDLNIEFDA 79 (172)
T ss_pred CCCCCCCCCcCCCcEEEEEccccC-CCCEEEccCCCCCCCCeeEECCCCCCCceeEEEeecCCCCCEEecCceEEEEeCC
Confidence 799999999999999999999985 4899999999999999999999999999999999977 78899999999999998
Q ss_pred CCCCCCCCCCCCcEEEeccCCCCcceEEEeCCCCCCCCCCCcCCcEEEEEcCCC-CceEEEcCCCCcccccccceeeeEE
Q 027419 112 LLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLP-GAYKIVHCPSVCESCVKLCSSVGRF 190 (223)
Q Consensus 112 ~~~~~~~C~~st~W~v~~~d~~~~~~~V~tGg~~g~pg~~t~~~~FkIek~~~~-~~YKLvfCp~~~~~~~~~C~dVGi~ 190 (223)
. +.|++|++|+|++ ++..++|+|+||| +|+.. .|||||||+++. +.|||+|||..|+ ...|+|||++
T Consensus 80 ~----~~C~~st~W~V~~-~~~~~~~~V~~gg---~~~~~--~~~FkIek~~~~~~~YKLv~Cp~~~~--~~~C~~vGi~ 147 (172)
T smart00452 80 P----PLCAQSTVWTVDE-DSAPEGLAVKTGG---YPGVR--DSWFKIEKYSGESNGYKLVYCPNGSD--DDKCGDVGIF 147 (172)
T ss_pred C----CCCCCCCEEEEec-CCccccEEEEeCC---cCCCC--CCeEEEEECCCCCCCEEEEEcCCCCC--CCccCccCeE
Confidence 7 7899999999985 6677899999998 44433 699999999863 5799999998764 5789999996
Q ss_pred EccCCceEEEEecCCCCceeEEEEECC
Q 027419 191 SFEDGVRRLVLVRDDEPAFPVVLIPAR 217 (223)
Q Consensus 191 ~~~~g~rrLvl~sd~~~p~~V~F~ka~ 217 (223)
.+++|+||||| +++ +||+|+|+|++
T Consensus 148 ~d~~g~rrL~l-s~~-~p~~v~F~k~~ 172 (172)
T smart00452 148 IDPEGGRRLVL-SNE-NPLVVVFKKAE 172 (172)
T ss_pred ECCCCcEEEEE-cCC-CCeEEEEEECC
Confidence 67799999999 763 69999999985
No 3
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=100.00 E-value=2.5e-58 Score=385.88 Aligned_cols=171 Identities=45% Similarity=0.789 Sum_probs=151.2
Q ss_pred ceecCCCCeeccCCCEEEEecccCCCCCceEEecCCCCCCCCceEECCCCCCCCeeEEEEcC--C-CCceeecCCceEEE
Q 027419 32 PLLDVNGNKVESTLQYHIVSAIWGAGGGGVSLHGGRNGYCPLDVIQLPSAIQWGKKLILSPY--D-NSTIVRESTDLNLR 108 (223)
Q Consensus 32 ~VlDt~G~~L~~g~~YyIlP~~~g~gGGgl~l~~t~n~~CPl~VvQ~~~~~~~GlPv~Fs~~--~-~~~~I~~~t~lnI~ 108 (223)
||+|+|||||++|++|||+|+++|.| ||+++++++|++|||+|+|++++..+|+||+|+|+ . .+++|||+++|||+
T Consensus 1 pVlD~~G~~l~~g~~YyI~p~~~~~G-GGl~l~~~~n~~CPl~Vvq~~~~~~~GlPv~Fs~~~~~~~~~~ir~st~l~I~ 79 (176)
T PF00197_consen 1 PVLDTDGNPLRNGGEYYILPAIRGAG-GGLTLAKTGNETCPLDVVQSPSELSRGLPVKFSPPYRNSFDTVIRESTDLNIE 79 (176)
T ss_dssp B-BETTSCB-BTTSEEEEEESSTGCS-EEEEEECCTTSSSSEEEEEESSTTS-BSEEEEEESSSSSSTBCTBTTSEEEEE
T ss_pred CcCCCCCCCCcCCCCEEEEeCccCCC-CeeEecCCCCCCCChheEEccCCCCCceeEEEEeCCcccCCCeeEcceEEEEE
Confidence 69999999999999999999999986 77999999999999999999999999999999993 3 77899999999999
Q ss_pred EccCCCCCCCCCCCCcEEEeccCCCCcceEEEeCCCCCCCCCCCcCCcEEEEEcCC--CCceEEEcCCCCccccccccee
Q 027419 109 FVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNL--PGAYKIVHCPSVCESCVKLCSS 186 (223)
Q Consensus 109 F~~~~~~~~~C~~st~W~v~~~d~~~~~~~V~tGg~~g~pg~~t~~~~FkIek~~~--~~~YKLvfCp~~~~~~~~~C~d 186 (223)
|... +.|..+++|+|++.+.++++ +|+|||.+| .++..|||||||++. .+.|||+|||..|+ ...|+|
T Consensus 80 F~~~----~~c~~~~~W~V~~~~~~~~~-~V~~gg~~~---~~~~~~~FkIek~~~~~~~~YKLvfCp~~~~--~~~C~d 149 (176)
T PF00197_consen 80 FSSP----TSCACSTVWKVVKDDPETGQ-FVKTGGVKG---PETVDSWFKIEKYEDGFNNAYKLVFCPSVCC--DSLCGD 149 (176)
T ss_dssp ESSE----CTTSSSSBEEEEEETTTTEE-EEEEESSSS---SGCGCCEEEEEEESSSSTTEEEEEEESSSSS--TSSEEE
T ss_pred EccC----CCCCccCEEEEeecCcccce-EEEeCCccc---CCccCcEEEEEEeCCCCCCcEEEEECCCccc--cCccce
Confidence 9988 78999899999987766555 999999887 678899999999987 25799999998764 789999
Q ss_pred eeEEEccCCceEEEEecCCCCceeEEEEE
Q 027419 187 VGRFSFEDGVRRLVLVRDDEPAFPVVLIP 215 (223)
Q Consensus 187 VGi~~~~~g~rrLvl~sd~~~p~~V~F~k 215 (223)
|||+.|++|+||||| +|+ +||.|+|||
T Consensus 150 vGi~~d~~g~rrL~l-~~~-~p~~V~F~K 176 (176)
T PF00197_consen 150 VGIYFDDNGNRRLAL-SDD-NPFVVVFQK 176 (176)
T ss_dssp EEEEEETTSEEEEEE-ESS-SB-EEEEEE
T ss_pred eeEEEcCCCeEEEEE-CCC-CcEEEEEEC
Confidence 999778899999999 774 799999998
No 4
>PF07951 Toxin_R_bind_C: Clostridium neurotoxin, C-terminal receptor binding; InterPro: IPR013104 The Clostridium neurotoxin family is composed of tetanus neurotoxins and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domains and two receptor-binding domains []. This domain is the C-terminal receptor-binding domain, which adopts a modified beta-trefoil fold with a six stranded beta-barrel and a beta-hairpin triplet capping the domain []. The first step in the intoxication process is a binding event between this domain and the pre-synaptic nerve ending []. ; PDB: 3AZW_A 3N7L_A 3AZV_A 3N7M_A 3RSJ_B 3FUQ_A 3RMX_D 3OBT_A 3RMY_B 3OGG_A ....
Probab=87.36 E-value=3.8 Score=35.68 Aligned_cols=133 Identities=15% Similarity=0.216 Sum_probs=75.8
Q ss_pred CCceecCCCCeeccCCCEEEEecccCC-----CCCce-EEecCCCCCCCCceEECCCCCCCCeeEEEEcCC----CCcee
Q 027419 30 PEPLLDVNGNKVESTLQYHIVSAIWGA-----GGGGV-SLHGGRNGYCPLDVIQLPSAIQWGKKLILSPYD----NSTIV 99 (223)
Q Consensus 30 ~~~VlDt~G~~L~~g~~YyIlP~~~g~-----gGGgl-~l~~t~n~~CPl~VvQ~~~~~~~GlPv~Fs~~~----~~~~I 99 (223)
...+.|==||+|+-..+||++++..-. ...++ .+..++.. =-+.+.-..+++-.|++|++.... .+..|
T Consensus 7 ~niLKDfWGN~L~YdkeYYl~N~~~~n~yi~~~~~~~~~~n~~r~~-~~~ni~~n~r~LY~G~k~iIkr~~~~~~~Dn~V 85 (214)
T PF07951_consen 7 TNILKDFWGNYLRYDKEYYLLNVLYPNKYIKRKSDSILSINNQRGT-GVFNIYLNYRDLYTGIKFIIKRYADNSNNDNRV 85 (214)
T ss_dssp TTB-BBTTSSB-BTTSEEEEEESSSTTEEEEEETTSEEEEEEEEEE-EEEEEESEETSSSSS-EEEEEESSTSSSTSSB-
T ss_pred ccHHHHhcCCccccCceeEEEecCCcccceeecccceeeecccccc-cceeeeeeehhhccCceEEEEEccCCCCCccee
Confidence 457889999999999999999987531 01222 22221110 011233334568899999998632 78899
Q ss_pred ecCCceEEEEccCCCCCCCCCCCCcEEEec---c--CCCCcceEEE---eCCCCCCCCCCCcCCcEEEEEcCCCCce-EE
Q 027419 100 RESTDLNLRFVGLLSGSKQCNELPLWKVDN---Y--DASSGRWFIT---TGGLDGHPGAETLLNWFKLEKTNLPGAY-KI 170 (223)
Q Consensus 100 ~~~t~lnI~F~~~~~~~~~C~~st~W~v~~---~--d~~~~~~~V~---tGg~~g~pg~~t~~~~FkIek~~~~~~Y-KL 170 (223)
|.+..+.|.|... ...|.|-. + +.+..+-.+- ++...++.+ .-..|+|++..+-..| ..
T Consensus 86 r~~D~iy~n~~~~---------n~ey~l~~~~~Y~~~~~~~~kli~l~~l~~~~~~~~---~~~vmqik~~~~~~~yc~q 153 (214)
T PF07951_consen 86 RNGDYIYFNVVIN---------NKEYRLYADTMYKNSKNQSEKLIYLLRLSDSNDNIN---QYIVMQIKNYNSQGTYCSQ 153 (214)
T ss_dssp BTTEEEEEEEEET---------TEEEEEEEETEECTTSSSSEEEEEEEEEECSCTTTC---EECEEEEEEEEESTSSEEE
T ss_pred ecCCEEEEEEEeC---------CceEEEEeeeecccccccchheeeEEecccCCCCcC---ceEEEEEEecccccchhhh
Confidence 9999999999765 35788721 1 1122233442 322222211 2358999998663334 66
Q ss_pred EcCCC
Q 027419 171 VHCPS 175 (223)
Q Consensus 171 vfCp~ 175 (223)
.||..
T Consensus 154 ~f~~n 158 (214)
T PF07951_consen 154 IFKSN 158 (214)
T ss_dssp EEEES
T ss_pred hhhhc
Confidence 66654
No 5
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=65.02 E-value=4.3 Score=26.83 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=15.1
Q ss_pred CCCCCceecCCCCeeccCC
Q 027419 27 SSVPEPLLDVNGNKVESTL 45 (223)
Q Consensus 27 ~a~~~~VlDt~G~~L~~g~ 45 (223)
+.+.+.|.|+.|-.+-+..
T Consensus 18 aCQaN~iRDvqGGtVaPSS 36 (46)
T PF02402_consen 18 ACQANYIRDVQGGTVAPSS 36 (46)
T ss_pred HhhhcceecCCCceECCCc
Confidence 5677899999998887653
No 6
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.77 E-value=95 Score=25.01 Aligned_cols=18 Identities=22% Similarity=0.147 Sum_probs=11.6
Q ss_pred CCceeecCCceEEEEccC
Q 027419 95 NSTIVRESTDLNLRFVGL 112 (223)
Q Consensus 95 ~~~~I~~~t~lnI~F~~~ 112 (223)
.+.+|-.-..|-|++...
T Consensus 103 GetIVclPh~lvIev~~~ 120 (132)
T COG5341 103 GETIVCLPHKLVIEVKSK 120 (132)
T ss_pred CCEEEEcCCeEEEEEEcc
Confidence 345666666677777655
No 7
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=53.00 E-value=13 Score=32.80 Aligned_cols=43 Identities=28% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCCCeeccCCCEEEEecccCCCC------CceEEecCCCCCCCCceEECCC
Q 027419 36 VNGNKVESTLQYHIVSAIWGAGG------GGVSLHGGRNGYCPLDVIQLPS 80 (223)
Q Consensus 36 t~G~~L~~g~~YyIlP~~~g~gG------Ggl~l~~t~n~~CPl~VvQ~~~ 80 (223)
..|.+-|+|.+||+++...|.-. ||+- .+.+..|=..|.|++.
T Consensus 116 p~G~EF~pG~~YY~IStStg~~~g~~~~~ggvc--~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 116 PLGFEFQPGHTYYYISTSTGDAEGLCNLRGGVC--VTRNMKLLMKVGQSPR 164 (233)
T ss_pred CCCccccCCCeEEEEeCCCccccccchhhCCEe--ccCCceEEEEecccCC
Confidence 36999999999999998876431 2333 3345667777888765
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=46.23 E-value=16 Score=27.84 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=4.8
Q ss_pred eecCCCCeecc
Q 027419 33 LLDVNGNKVES 43 (223)
Q Consensus 33 VlDt~G~~L~~ 43 (223)
+...+-++|+.
T Consensus 32 ~~~~~~~~v~~ 42 (95)
T PF07172_consen 32 EKEEEENEVQD 42 (95)
T ss_pred cccccCCCCCc
Confidence 33444444544
No 9
>PF05474 Semenogelin: Semenogelin; InterPro: IPR008836 This family consists of several mammalian semenogelin (I and II) proteins. Freshly ejaculated Homo sapiens semen has the appearance of a loose gel in which the predominant structural protein components are the seminal vesicle secreted semenogelins (Sg) [].; GO: 0005198 structural molecule activity, 0019953 sexual reproduction, 0005576 extracellular region, 0030141 stored secretory granule
Probab=44.45 E-value=11 Score=36.88 Aligned_cols=15 Identities=33% Similarity=0.662 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHHH
Q 027419 1 MKTLLATILSFLILA 15 (223)
Q Consensus 1 MK~~~~~~lsfll~a 15 (223)
||++++|+||+||+.
T Consensus 1 MK~~I~F~lSLLLiL 15 (582)
T PF05474_consen 1 MKSIIFFVLSLLLIL 15 (582)
T ss_pred CCceeehHHHHHHHH
Confidence 999998888877754
No 10
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=43.82 E-value=32 Score=21.74 Aligned_cols=16 Identities=50% Similarity=0.619 Sum_probs=9.5
Q ss_pred CchhHHHHHHHHHHHHh
Q 027419 1 MKTLLATILSFLILALA 17 (223)
Q Consensus 1 MK~~~~~~lsfll~a~~ 17 (223)
||...+.++ |+|+|+.
T Consensus 1 Mk~l~~a~~-l~lLal~ 16 (36)
T PF08194_consen 1 MKCLSLAFA-LLLLALA 16 (36)
T ss_pred CceeHHHHH-HHHHHHH
Confidence 898776333 5555554
No 11
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=40.59 E-value=18 Score=28.90 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=17.0
Q ss_pred CCCCeeccCCCEEEEecccC
Q 027419 36 VNGNKVESTLQYHIVSAIWG 55 (223)
Q Consensus 36 t~G~~L~~g~~YyIlP~~~g 55 (223)
.-.++|++|.-||+||..+-
T Consensus 64 ~~d~~L~~G~~Y~llP~~~~ 83 (181)
T PF14009_consen 64 PPDEELQPGQIYFLLPMSRL 83 (181)
T ss_pred CccCeecCCCEEEEEEcccc
Confidence 45689999999999998763
No 12
>COG5510 Predicted small secreted protein [Function unknown]
Probab=39.72 E-value=29 Score=22.87 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=10.4
Q ss_pred CchhHHHHHHHHHHHHh
Q 027419 1 MKTLLATILSFLILALA 17 (223)
Q Consensus 1 MK~~~~~~lsfll~a~~ 17 (223)
||.+.++.++++|.++.
T Consensus 2 mk~t~l~i~~vll~s~l 18 (44)
T COG5510 2 MKKTILLIALVLLASTL 18 (44)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 77766665545665554
No 13
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=33.63 E-value=40 Score=26.42 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=20.3
Q ss_pred CCCceecCCCCeeccCCCEEEEecc
Q 027419 29 VPEPLLDVNGNKVESTLQYHIVSAI 53 (223)
Q Consensus 29 ~~~~VlDt~G~~L~~g~~YyIlP~~ 53 (223)
....|.|.+||.|+.|..-.|+--.
T Consensus 41 ~~~~v~DsnGn~L~dGDsV~lIKDL 65 (112)
T COG2824 41 EALIVKDSNGNLLADGDSVTLIKDL 65 (112)
T ss_pred CceEEEcCCCcEeccCCeEEEEEee
Confidence 3468999999999999888776544
No 14
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=31.72 E-value=41 Score=22.95 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHHHHhh
Q 027419 1 MKTLLATILSFLILALAS 18 (223)
Q Consensus 1 MK~~~~~~lsfll~a~~t 18 (223)
||+..|++- .||+||-+
T Consensus 1 MRTL~LLaA-lLLlAlqa 17 (52)
T PF00879_consen 1 MRTLALLAA-LLLLALQA 17 (52)
T ss_pred CcHHHHHHH-HHHHHHHH
Confidence 888776664 68888764
No 15
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.92 E-value=73 Score=27.54 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=26.8
Q ss_pred CchhHHHHHHHHHHHHhhccccccCCCCCCCceecCCCCeeccCCCE---EEEe
Q 027419 1 MKTLLATILSFLILALASCPLLVLGTSSVPEPLLDVNGNKVESTLQY---HIVS 51 (223)
Q Consensus 1 MK~~~~~~lsfll~a~~t~~~l~~~~~a~~~~VlDt~G~~L~~g~~Y---yIlP 51 (223)
||+.++++| ||++. + .. +|+...|-=.||..|+-..++ |+++
T Consensus 1 mk~~~~lal--ll~s~---~--a~--Aa~~~~VTLedGrqV~LnDDFTWeYv~~ 45 (199)
T PF11355_consen 1 MKTYILLAL--LLLSS---S--AF--AAEVATVTLEDGRQVQLNDDFTWEYVIP 45 (199)
T ss_pred CchHHHHHH--HHHhh---h--hh--hccccEEEecCCCEEEecCCceEEEEec
Confidence 888876654 23331 1 11 334457888999999988766 6664
No 16
>PRK10220 hypothetical protein; Provisional
Probab=30.90 E-value=49 Score=25.99 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=18.9
Q ss_pred CceecCCCCeeccCCCEEEEecc
Q 027419 31 EPLLDVNGNKVESTLQYHIVSAI 53 (223)
Q Consensus 31 ~~VlDt~G~~L~~g~~YyIlP~~ 53 (223)
..|.|.+|++|..|..--++=-.
T Consensus 42 ~~vkDsnG~~L~dGDsV~viKDL 64 (111)
T PRK10220 42 LIVKDANGNLLADGDSVTIVKDL 64 (111)
T ss_pred ceEEcCCCCCccCCCEEEEEeec
Confidence 46999999999999887776544
No 17
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=30.45 E-value=51 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.0
Q ss_pred CceecCCCCeeccCCCEEEEecc
Q 027419 31 EPLLDVNGNKVESTLQYHIVSAI 53 (223)
Q Consensus 31 ~~VlDt~G~~L~~g~~YyIlP~~ 53 (223)
..|.|.+|++|+.|.+--|+=-.
T Consensus 41 ~~~kDsnG~~L~dGDsV~liKDL 63 (109)
T TIGR00686 41 LIVKDCNGNLLANGDSVILIKDL 63 (109)
T ss_pred ceEEcCCCCCccCCCEEEEEeec
Confidence 46999999999999887776544
No 18
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=30.03 E-value=40 Score=24.47 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=12.1
Q ss_pred CceecCCCCeeccCCCEEEEe
Q 027419 31 EPLLDVNGNKVESTLQYHIVS 51 (223)
Q Consensus 31 ~~VlDt~G~~L~~g~~YyIlP 51 (223)
-++.|.-|+++.+|.+|+|.|
T Consensus 24 ~~i~D~yG~EI~~~D~y~i~~ 44 (71)
T PF09466_consen 24 HPIEDFYGDEIFPGDDYFISP 44 (71)
T ss_dssp -B---TTSS-B-TTS-EEE-E
T ss_pred cceeeeeccccccCCeEEEeC
Confidence 467789999999999999976
No 19
>COG3045 CreA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.80 E-value=95 Score=25.90 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=20.1
Q ss_pred ceecCCCCeeccCCCEEEEecccC
Q 027419 32 PLLDVNGNKVESTLQYHIVSAIWG 55 (223)
Q Consensus 32 ~VlDt~G~~L~~g~~YyIlP~~~g 55 (223)
.|++.--+|.-.|..-||--+.+|
T Consensus 42 IvveafdDP~V~gVTCyvs~a~~g 65 (165)
T COG3045 42 IVVEAFDDPDVKGVTCYVSRAKTG 65 (165)
T ss_pred EEEEecCCCCcCcEEEEEEEeccc
Confidence 667777788889999999998876
No 20
>PF03831 PhnA: PhnA protein; InterPro: IPR013988 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the C-terminal domain of PhnA.; PDB: 2AKK_A 2AKL_A.
Probab=29.70 E-value=25 Score=24.36 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=11.4
Q ss_pred eecCCCCeeccCCCEEEEec
Q 027419 33 LLDVNGNKVESTLQYHIVSA 52 (223)
Q Consensus 33 VlDt~G~~L~~g~~YyIlP~ 52 (223)
|.|.+|++|+.|.+--++=-
T Consensus 2 v~DsnGn~L~dGDsV~~iKD 21 (56)
T PF03831_consen 2 VKDSNGNELQDGDSVTLIKD 21 (56)
T ss_dssp -B-TTS-B--TTEEEEESS-
T ss_pred eEcCCCCCccCCCEEEEEee
Confidence 78999999999987766543
No 21
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=28.79 E-value=41 Score=30.86 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=13.0
Q ss_pred CCCCceecCCCCeeccCC
Q 027419 28 SVPEPLLDVNGNKVESTL 45 (223)
Q Consensus 28 a~~~~VlDt~G~~L~~g~ 45 (223)
+.+.+|+|.||.-|...+
T Consensus 19 a~A~~vy~~d~ssvtlyG 36 (351)
T PRK10159 19 VQAAEVYNKDGNKLDVYG 36 (351)
T ss_pred ccEEEEEECCCCEEEEEE
Confidence 344589999998877654
No 22
>PF15284 PAGK: Phage-encoded virulence factor
Probab=26.31 E-value=46 Score=23.46 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=8.9
Q ss_pred Cc--hhHHHHHHHHHHHH
Q 027419 1 MK--TLLATILSFLILAL 16 (223)
Q Consensus 1 MK--~~~~~~lsfll~a~ 16 (223)
|| ...++.|.|.|.|.
T Consensus 1 Mkk~ksifL~l~~~LsA~ 18 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAA 18 (61)
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 77 44455555666654
No 23
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=25.40 E-value=89 Score=29.04 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCCCceecCCCCeec----------cCCCEE--EEecccCCCCCceE
Q 027419 27 SSVPEPLLDVNGNKVE----------STLQYH--IVSAIWGAGGGGVS 62 (223)
Q Consensus 27 ~a~~~~VlDt~G~~L~----------~g~~Yy--IlP~~~g~gGGgl~ 62 (223)
..+.+.|.+.+|++-. ....|| +||-..|.. .|+.
T Consensus 24 dd~edkv~qk~~~sseq~k~Iv~k~nis~n~YktvLpyk~~ka-RGl~ 70 (382)
T COG4851 24 DDTEDKVVQKEGKSSEQEKGIVPKANISENYYKTVLPYKAGKA-RGLG 70 (382)
T ss_pred CCccchhhhccCCchhhcccccccccccccchheeeeeccccc-cchh
Confidence 3456789999998766 246677 888766654 4443
No 24
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=25.00 E-value=41 Score=20.73 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=14.7
Q ss_pred CCCceecCCCCeeccCCCE
Q 027419 29 VPEPLLDVNGNKVESTLQY 47 (223)
Q Consensus 29 ~~~~VlDt~G~~L~~g~~Y 47 (223)
..+++.|.+|+++.--.+|
T Consensus 11 r~n~l~Dv~G~~Inl~~dF 29 (32)
T PF10813_consen 11 RHNPLKDVKGNPINLYKDF 29 (32)
T ss_pred cCCcccccCCCEEechhcc
Confidence 4578999999998765554
No 25
>PF12702 Lipocalin_3: Lipocalin-like; InterPro: IPR024311 This is a family of proteins of 115 residues on average. There are 16 subunits in each asymmetric unit cell. The interface interaction indicates that the biomolecule of protein Q8A9E6 from SWISSPROT should be a monomer. The family has two highly conserved tryptophan residues. The fold is very similar to the lipocalin-like fold from several comparable structures.; PDB: 3HTY_I.
Probab=24.33 E-value=42 Score=25.36 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=23.6
Q ss_pred CcEEEeccCCCCcceEEEeCCCCCCCCCCCcCCcEEEEEcCC
Q 027419 123 PLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNL 164 (223)
Q Consensus 123 t~W~v~~~d~~~~~~~V~tGg~~g~pg~~t~~~~FkIek~~~ 164 (223)
..|++. + ..++..|-.+|+.+.......|+|++...
T Consensus 42 ~~Wk~~--g----~~Lil~g~s~Gn~~~~~~~~t~~I~~lt~ 77 (93)
T PF12702_consen 42 EKWKLE--G----NKLILEGESIGNGQSSEFTDTFDIEKLTS 77 (93)
T ss_dssp EEEEEE--T----TEEEEEEEEEETTEEEEEEEEEEEEEE-S
T ss_pred eeEEEc--C----CEEEEEEEEccCCccEEEEEEEEEEEeCC
Confidence 579965 2 24677776677654344567899999865
No 26
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=23.67 E-value=3.4e+02 Score=23.44 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=37.8
Q ss_pred eccCCCEEEEecccCCCCCceEEecCCCCCCCCceEECCCCCC---CCeeEEEEcCC-CCceeecCCceEEEEccCCCCC
Q 027419 41 VESTLQYHIVSAIWGAGGGGVSLHGGRNGYCPLDVIQLPSAIQ---WGKKLILSPYD-NSTIVRESTDLNLRFVGLLSGS 116 (223)
Q Consensus 41 L~~g~~YyIlP~~~g~gGGgl~l~~t~n~~CPl~VvQ~~~~~~---~GlPv~Fs~~~-~~~~I~~~t~lnI~F~~~~~~~ 116 (223)
|..+..-.|.++-.. +-.+.+..++++ =|. .+|+.-+.. .-.|...+|+- +. --.+...|.|..... ..
T Consensus 23 v~l~~TRvI~~~~~~--~~si~i~N~~~~-~~~-LvQsWv~~~~~~~~~pfivtPPl~rl-~p~~~q~lRIi~~~~--~l 95 (228)
T PRK15208 23 VALSSTRVIYDGSKK--EASLTVNNKSKT-EEF-LIQSWIDDANGNKKTPFIITPPLFKL-DPTKNNVLRIVNITN--TL 95 (228)
T ss_pred EEeCceEEEEeCCCc--eEEEEEEeCCCC-CcE-EEEEEEECCCCCccCCEEECCCeEEE-CCCCccEEEEEECCC--CC
Confidence 455566777776322 245666554332 243 345532211 11477777763 10 011223444544322 12
Q ss_pred CCCCCCCcEEEe
Q 027419 117 KQCNELPLWKVD 128 (223)
Q Consensus 117 ~~C~~st~W~v~ 128 (223)
|.=.||..|...
T Consensus 96 P~DrESlf~lnv 107 (228)
T PRK15208 96 PQDRESVYWINV 107 (228)
T ss_pred CCCeeEEEEEEE
Confidence 445567777544
No 27
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=22.98 E-value=54 Score=26.79 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=16.7
Q ss_pred CCCeeccCCCEEEEecccCCC
Q 027419 37 NGNKVESTLQYHIVSAIWGAG 57 (223)
Q Consensus 37 ~G~~L~~g~~YyIlP~~~g~g 57 (223)
.|-+-++|.+||++....|.-
T Consensus 101 ~G~EF~pG~~YY~ISts~g~~ 121 (145)
T PF00812_consen 101 LGLEFQPGHDYYYISTSTGTQ 121 (145)
T ss_dssp TSSS--TTEEEEEEEEESSSS
T ss_pred CCeeecCCCeEEEEEccCCCC
Confidence 799999999999999888754
No 28
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=22.09 E-value=1.8e+02 Score=23.32 Aligned_cols=29 Identities=21% Similarity=0.043 Sum_probs=21.7
Q ss_pred CCCceecCCCCeeccCCCEEEEecccCCC
Q 027419 29 VPEPLLDVNGNKVESTLQYHIVSAIWGAG 57 (223)
Q Consensus 29 ~~~~VlDt~G~~L~~g~~YyIlP~~~g~g 57 (223)
.|.......+..=+.+++||+--++++.|
T Consensus 33 pp~l~v~~~~~~r~~~gqyyVpF~V~N~g 61 (122)
T TIGR02588 33 AAVLEVAPAEVERMQTGQYYVPFAIHNLG 61 (122)
T ss_pred CCeEEEeehheeEEeCCEEEEEEEEEeCC
Confidence 44556677777666889999998888875
No 29
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=21.41 E-value=1.2e+02 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=22.0
Q ss_pred ceEEEeCCCCCCCCCCCcCCcEEEEEcCC------CCceEEEc
Q 027419 136 RWFITTGGLDGHPGAETLLNWFKLEKTNL------PGAYKIVH 172 (223)
Q Consensus 136 ~~~V~tGg~~g~pg~~t~~~~FkIek~~~------~~~YKLvf 172 (223)
.+.|.-|..+++ +--.||.|||-+. +..|||+.
T Consensus 109 ~RiVGC~c~eD~----~~V~Wmwl~Kge~~rc~eCG~~fkL~~ 147 (153)
T KOG3352|consen 109 KRIVGCGCEEDS----HAVVWMWLEKGETQRCPECGHYFKLVP 147 (153)
T ss_pred ceEEeecccCCC----cceEEEEEEcCCcccCCcccceEEeee
Confidence 567777665553 2347999999875 24567665
No 30
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.35 E-value=82 Score=24.26 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=6.8
Q ss_pred CchhHHHHH
Q 027419 1 MKTLLATIL 9 (223)
Q Consensus 1 MK~~~~~~l 9 (223)
||.++++++
T Consensus 1 MKk~~ll~~ 9 (114)
T PF11777_consen 1 MKKIILLAS 9 (114)
T ss_pred CchHHHHHH
Confidence 998887664
Done!