Query 027420
Match_columns 223
No_of_seqs 150 out of 882
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:41:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3011 Predicted thiol-disulf 100.0 3.6E-29 7.8E-34 202.7 11.9 131 77-211 3-135 (137)
2 PF04134 DUF393: Protein of un 100.0 2.6E-28 5.6E-33 189.2 11.8 110 86-197 1-114 (114)
3 TIGR02180 GRX_euk Glutaredoxin 96.3 0.013 2.8E-07 41.7 5.9 71 84-161 1-77 (84)
4 cd03027 GRX_DEP Glutaredoxin ( 95.9 0.041 9E-07 38.9 6.7 70 83-158 2-71 (73)
5 cd02066 GRX_family Glutaredoxi 95.8 0.056 1.2E-06 36.4 7.1 71 83-159 1-71 (72)
6 cd03419 GRX_GRXh_1_2_like Glut 95.7 0.033 7.2E-07 39.5 5.8 70 83-161 1-76 (82)
7 TIGR02190 GlrX-dom Glutaredoxi 95.4 0.071 1.5E-06 38.5 6.5 73 80-159 6-78 (79)
8 PHA03050 glutaredoxin; Provisi 95.1 0.1 2.2E-06 40.6 7.1 83 79-161 10-92 (108)
9 cd03418 GRX_GRXb_1_3_like Glut 94.5 0.22 4.8E-06 34.8 6.9 70 83-160 1-73 (75)
10 PRK10638 glutaredoxin 3; Provi 94.3 0.32 6.8E-06 35.3 7.7 73 83-161 3-75 (83)
11 PRK11200 grxA glutaredoxin 1; 94.1 0.89 1.9E-05 32.9 9.6 75 83-161 2-81 (85)
12 cd03040 GST_N_mPGES2 GST_N fam 94.0 0.7 1.5E-05 32.5 8.8 70 83-161 1-74 (77)
13 cd02966 TlpA_like_family TlpA- 93.2 0.33 7.1E-06 35.0 6.0 40 81-120 20-61 (116)
14 TIGR02183 GRXA Glutaredoxin, G 92.9 0.73 1.6E-05 33.9 7.5 74 84-161 2-80 (86)
15 cd03028 GRX_PICOT_like Glutare 92.8 0.8 1.7E-05 33.9 7.7 64 91-160 22-85 (90)
16 TIGR02189 GlrX-like_plant Glut 92.8 0.52 1.1E-05 35.8 6.7 79 80-161 6-84 (99)
17 cd03041 GST_N_2GST_N GST_N fam 92.8 0.96 2.1E-05 32.1 7.8 72 84-161 2-75 (77)
18 cd03029 GRX_hybridPRX5 Glutare 92.7 0.55 1.2E-05 32.8 6.4 69 83-159 2-71 (72)
19 KOG1422 Intracellular Cl- chan 92.5 0.67 1.4E-05 40.7 7.8 93 88-189 17-111 (221)
20 TIGR02200 GlrX_actino Glutared 92.1 0.35 7.7E-06 33.5 4.7 36 83-121 1-36 (77)
21 cd03055 GST_N_Omega GST_N fami 92.0 0.85 1.8E-05 33.5 6.9 77 76-159 11-88 (89)
22 TIGR02181 GRX_bact Glutaredoxi 92.0 0.78 1.7E-05 32.5 6.5 72 84-161 1-72 (79)
23 TIGR02196 GlrX_YruB Glutaredox 91.8 0.81 1.7E-05 30.8 6.2 36 83-121 1-36 (74)
24 cd02973 TRX_GRX_like Thioredox 91.8 0.78 1.7E-05 31.3 6.1 37 83-119 2-40 (67)
25 PRK10329 glutaredoxin-like pro 91.5 0.87 1.9E-05 33.4 6.4 62 83-153 2-65 (81)
26 PTZ00051 thioredoxin; Provisio 91.2 0.85 1.8E-05 33.2 6.2 64 82-149 20-84 (98)
27 COG3019 Predicted metal-bindin 91.0 1.8 3.9E-05 35.9 8.3 78 80-163 24-104 (149)
28 TIGR00365 monothiol glutaredox 90.3 2.1 4.6E-05 32.3 7.8 66 90-161 25-90 (97)
29 PF13728 TraF: F plasmid trans 90.2 0.26 5.7E-06 42.8 3.0 40 79-118 119-159 (215)
30 TIGR02738 TrbB type-F conjugat 90.0 0.54 1.2E-05 38.7 4.6 41 79-119 49-90 (153)
31 cd00570 GST_N_family Glutathio 89.9 1.2 2.5E-05 29.2 5.5 68 85-158 2-69 (71)
32 PRK13703 conjugal pilus assemb 89.7 0.28 6.1E-06 43.8 2.9 39 79-118 142-180 (248)
33 cd03037 GST_N_GRX2 GST_N famil 89.5 3.2 6.9E-05 28.6 7.7 67 85-159 2-69 (71)
34 PF00578 AhpC-TSA: AhpC/TSA fa 88.9 1 2.2E-05 34.0 5.1 42 80-121 25-69 (124)
35 TIGR02739 TraF type-F conjugat 88.4 0.4 8.7E-06 43.0 3.0 38 79-117 149-186 (256)
36 cd02967 mauD Methylamine utili 87.7 2.3 5E-05 31.7 6.4 38 81-118 22-60 (114)
37 PF00085 Thioredoxin: Thioredo 87.2 2.5 5.5E-05 30.4 6.1 51 81-131 18-70 (103)
38 PRK10877 protein disulfide iso 86.7 1.2 2.5E-05 39.1 4.8 36 80-115 107-142 (232)
39 cd03045 GST_N_Delta_Epsilon GS 86.7 4.3 9.2E-05 27.9 6.9 70 84-159 1-72 (74)
40 TIGR01126 pdi_dom protein disu 86.6 2.3 4.9E-05 30.6 5.6 70 80-152 13-88 (102)
41 TIGR02194 GlrX_NrdH Glutaredox 86.5 2.8 6.1E-05 29.3 5.9 34 85-121 2-35 (72)
42 cd03059 GST_N_SspA GST_N famil 86.5 4.9 0.00011 27.5 7.0 70 84-160 1-70 (73)
43 cd03023 DsbA_Com1_like DsbA fa 86.4 1.2 2.6E-05 34.5 4.3 38 80-117 5-44 (154)
44 TIGR00411 redox_disulf_1 small 86.4 1.7 3.7E-05 30.4 4.7 23 83-105 2-24 (82)
45 cd02982 PDI_b'_family Protein 86.1 2.8 6.2E-05 30.6 6.0 55 81-135 13-69 (103)
46 cd02949 TRX_NTR TRX domain, no 85.9 3.4 7.3E-05 30.4 6.4 65 81-149 14-80 (97)
47 PRK10824 glutaredoxin-4; Provi 85.7 2.7 5.8E-05 33.3 5.9 76 80-161 13-93 (115)
48 cd03060 GST_N_Omega_like GST_N 85.6 3.2 7E-05 28.7 5.8 66 85-157 2-68 (71)
49 PRK03147 thiol-disulfide oxido 85.4 2.8 6E-05 33.6 6.1 38 82-119 63-102 (173)
50 PRK15412 thiol:disulfide inter 85.4 5.3 0.00012 33.2 8.0 35 82-118 70-104 (185)
51 PRK11657 dsbG disulfide isomer 85.4 1.5 3.2E-05 38.8 4.9 38 80-117 117-155 (251)
52 cd01659 TRX_superfamily Thiore 85.2 1.2 2.7E-05 27.4 3.2 37 84-121 1-40 (69)
53 cd02961 PDI_a_family Protein D 85.1 2.2 4.7E-05 30.1 4.8 62 82-146 17-82 (101)
54 cd02976 NrdH NrdH-redoxin (Nrd 84.9 3.5 7.5E-05 27.6 5.6 65 84-154 2-66 (73)
55 TIGR02740 TraF-like TraF-like 84.7 4.3 9.2E-05 36.4 7.5 40 80-119 166-206 (271)
56 cd03020 DsbA_DsbC_DsbG DsbA fa 84.6 1.7 3.6E-05 36.5 4.6 37 80-117 77-113 (197)
57 cd03056 GST_N_4 GST_N family, 84.2 5.8 0.00013 26.9 6.5 69 84-158 1-71 (73)
58 PF13098 Thioredoxin_2: Thiore 83.0 1.4 3.1E-05 32.7 3.2 24 81-104 6-29 (112)
59 cd03051 GST_N_GTT2_like GST_N 82.9 8.3 0.00018 26.1 6.9 67 85-158 2-72 (74)
60 cd03026 AhpF_NTD_C TRX-GRX-lik 82.3 2.5 5.5E-05 31.5 4.3 49 82-131 14-64 (89)
61 cd02984 TRX_PICOT TRX domain, 82.3 7.8 0.00017 27.8 6.9 64 81-148 15-80 (97)
62 cd02968 SCO SCO (an acronym fo 82.0 4 8.7E-05 31.5 5.5 39 81-119 23-67 (142)
63 COG4545 Glutaredoxin-related p 81.9 3.6 7.9E-05 30.8 4.8 38 83-123 3-40 (85)
64 TIGR02187 GlrX_arch Glutaredox 81.8 4.5 9.8E-05 34.5 6.2 69 81-154 134-204 (215)
65 cd02972 DsbA_family DsbA famil 81.4 2.4 5.1E-05 29.7 3.7 34 84-117 1-37 (98)
66 cd03036 ArsC_like Arsenate Red 81.4 2.5 5.5E-05 32.6 4.1 35 84-121 1-35 (111)
67 PTZ00062 glutaredoxin; Provisi 81.3 5.2 0.00011 34.7 6.5 76 79-160 110-190 (204)
68 cd02989 Phd_like_TxnDC9 Phosdu 81.2 6.6 0.00014 30.2 6.4 66 81-150 23-89 (113)
69 cd03061 GST_N_CLIC GST_N famil 80.9 5.6 0.00012 30.1 5.8 66 90-162 20-85 (91)
70 cd02957 Phd_like Phosducin (Ph 80.9 7.1 0.00015 29.6 6.5 65 82-150 26-90 (113)
71 cd02950 TxlA TRX-like protein 80.5 7.7 0.00017 31.1 6.9 64 83-149 23-90 (142)
72 cd02947 TRX_family TRX family; 80.5 8.3 0.00018 26.3 6.2 38 82-119 12-49 (93)
73 PRK13728 conjugal transfer pro 80.4 2.2 4.9E-05 36.4 3.8 39 79-118 68-106 (181)
74 PRK12759 bifunctional gluaredo 80.2 17 0.00037 34.5 10.1 72 83-157 3-79 (410)
75 cd02995 PDI_a_PDI_a'_C PDIa fa 79.1 3.7 8E-05 29.7 4.2 39 82-120 20-61 (104)
76 cd03032 ArsC_Spx Arsenate Redu 78.8 5 0.00011 31.0 5.1 35 84-121 2-36 (115)
77 cd03004 PDI_a_ERdj5_C PDIa fam 78.3 4.6 0.0001 29.7 4.6 49 82-130 21-71 (104)
78 PRK01655 spxA transcriptional 78.2 4.8 0.0001 32.2 4.9 36 84-122 2-37 (131)
79 PF13417 GST_N_3: Glutathione 78.1 16 0.00034 25.6 7.1 69 86-162 1-70 (75)
80 TIGR01617 arsC_related transcr 78.0 5 0.00011 31.1 4.9 35 84-121 1-35 (117)
81 cd02975 PfPDO_like_N Pyrococcu 77.5 6 0.00013 30.4 5.1 47 83-130 24-73 (113)
82 cd03052 GST_N_GDAP1 GST_N fami 76.3 13 0.00027 26.2 6.2 69 85-159 2-72 (73)
83 TIGR00385 dsbE periplasmic pro 75.9 17 0.00038 29.6 7.8 34 82-117 65-98 (173)
84 TIGR01068 thioredoxin thioredo 75.7 9.8 0.00021 27.0 5.6 50 82-131 16-67 (101)
85 cd02977 ArsC_family Arsenate R 75.3 4.8 0.0001 30.3 4.0 34 84-120 1-34 (105)
86 cd02956 ybbN ybbN protein fami 75.0 14 0.00029 26.6 6.3 63 82-148 14-78 (96)
87 cd03053 GST_N_Phi GST_N family 74.5 20 0.00043 24.7 6.8 71 84-160 2-74 (76)
88 cd03031 GRX_GRX_like Glutaredo 73.8 22 0.00049 29.2 7.9 66 91-161 15-83 (147)
89 PF13905 Thioredoxin_8: Thiore 72.8 3.6 7.9E-05 29.6 2.7 38 84-121 5-45 (95)
90 PF13462 Thioredoxin_4: Thiore 72.6 4.7 0.0001 31.7 3.5 25 80-104 12-36 (162)
91 PRK10996 thioredoxin 2; Provis 70.3 22 0.00047 28.2 6.9 65 81-149 53-119 (139)
92 cd03054 GST_N_Metaxin GST_N fa 70.2 24 0.00052 24.2 6.4 56 91-160 15-70 (72)
93 cd03001 PDI_a_P5 PDIa family, 70.2 8.8 0.00019 27.7 4.3 49 82-130 20-70 (103)
94 PF00462 Glutaredoxin: Glutare 69.8 8.7 0.00019 25.6 3.9 35 84-121 1-35 (60)
95 cd02999 PDI_a_ERp44_like PDIa 69.5 6.9 0.00015 29.3 3.6 39 81-119 19-57 (100)
96 cd02998 PDI_a_ERp38 PDIa famil 69.4 7.9 0.00017 27.9 3.9 40 82-121 20-62 (105)
97 PRK12559 transcriptional regul 69.2 9.9 0.00021 30.4 4.7 35 84-121 2-36 (131)
98 cd02948 TRX_NDPK TRX domain, T 69.0 25 0.00055 26.0 6.7 62 83-148 20-83 (102)
99 cd03035 ArsC_Yffb Arsenate Red 68.9 9.5 0.00021 29.3 4.4 35 84-121 1-35 (105)
100 PRK09381 trxA thioredoxin; Pro 68.8 20 0.00044 26.5 6.1 64 81-149 22-88 (109)
101 cd03003 PDI_a_ERdj5_N PDIa fam 68.6 11 0.00024 27.5 4.6 47 83-130 21-70 (101)
102 PF13409 GST_N_2: Glutathione 68.4 36 0.00079 23.5 7.1 66 91-160 1-68 (70)
103 PF01323 DSBA: DSBA-like thior 68.1 5.2 0.00011 32.5 2.9 37 83-119 1-39 (193)
104 PF13192 Thioredoxin_3: Thiore 67.8 33 0.00072 24.2 6.8 68 83-159 2-72 (76)
105 cd03049 GST_N_3 GST_N family, 67.4 37 0.0008 23.2 7.3 70 84-158 1-71 (73)
106 cd03010 TlpA_like_DsbE TlpA-li 67.4 7.3 0.00016 29.7 3.5 37 82-119 27-63 (127)
107 cd02987 Phd_like_Phd Phosducin 67.1 23 0.00049 29.6 6.6 65 82-150 85-149 (175)
108 cd02970 PRX_like2 Peroxiredoxi 66.6 9.5 0.0002 29.4 4.0 39 83-121 26-67 (149)
109 PTZ00056 glutathione peroxidas 65.7 22 0.00047 30.2 6.4 36 83-118 42-79 (199)
110 TIGR01295 PedC_BrcD bacterioci 65.3 48 0.001 25.9 7.9 37 83-119 26-63 (122)
111 cd03080 GST_N_Metaxin_like GST 65.1 44 0.00095 23.2 7.3 57 91-161 16-72 (75)
112 cd02996 PDI_a_ERp44 PDIa famil 63.6 16 0.00034 27.2 4.6 23 83-105 21-43 (108)
113 cd03002 PDI_a_MPD1_like PDI fa 63.3 15 0.00032 27.0 4.3 37 83-119 21-60 (109)
114 cd03034 ArsC_ArsC Arsenate Red 63.3 14 0.00031 28.5 4.4 35 84-121 1-35 (112)
115 PRK13344 spxA transcriptional 63.0 16 0.00035 29.2 4.8 35 84-121 2-36 (132)
116 TIGR02187 GlrX_arch Glutaredox 62.3 18 0.00038 30.8 5.2 49 82-130 21-75 (215)
117 cd03005 PDI_a_ERp46 PDIa famil 61.9 11 0.00024 27.1 3.4 23 83-105 19-41 (102)
118 TIGR00014 arsC arsenate reduct 61.3 16 0.00035 28.3 4.4 35 84-121 1-35 (114)
119 cd03039 GST_N_Sigma_like GST_N 60.9 50 0.0011 22.5 7.0 70 84-159 1-70 (72)
120 PRK10387 glutaredoxin 2; Provi 60.8 57 0.0012 26.8 8.0 71 84-162 1-72 (210)
121 cd00340 GSH_Peroxidase Glutath 60.3 12 0.00026 29.9 3.6 36 82-118 24-61 (152)
122 cd02971 PRX_family Peroxiredox 60.1 12 0.00027 28.5 3.6 40 83-122 25-67 (140)
123 cd02997 PDI_a_PDIR PDIa family 59.8 9.3 0.0002 27.6 2.7 38 82-119 19-61 (104)
124 PHA02125 thioredoxin-like prot 59.8 24 0.00052 24.8 4.8 33 84-121 2-34 (75)
125 cd02988 Phd_like_VIAF Phosduci 59.5 30 0.00065 29.4 6.1 61 83-149 105-165 (192)
126 PRK10382 alkyl hydroperoxide r 59.5 25 0.00055 29.7 5.6 24 82-105 33-57 (187)
127 TIGR03137 AhpC peroxiredoxin. 59.4 20 0.00042 29.9 4.9 23 83-105 34-57 (187)
128 cd03012 TlpA_like_DipZ_like Tl 59.1 15 0.00034 28.0 4.0 38 82-119 25-64 (126)
129 PF08534 Redoxin: Redoxin; In 59.1 12 0.00026 29.1 3.4 23 83-105 31-54 (146)
130 PRK15113 glutathione S-transfe 58.7 64 0.0014 27.0 8.0 77 82-162 4-82 (214)
131 cd03050 GST_N_Theta GST_N fami 58.5 58 0.0012 22.4 6.8 71 84-160 1-73 (76)
132 cd03033 ArsC_15kD Arsenate Red 58.3 20 0.00043 28.0 4.4 36 83-121 1-36 (113)
133 cd02969 PRX_like1 Peroxiredoxi 56.9 14 0.0003 29.9 3.5 41 80-120 25-67 (171)
134 cd03019 DsbA_DsbA DsbA family, 56.9 16 0.00035 29.1 3.8 26 80-105 15-40 (178)
135 TIGR02182 GRXB Glutaredoxin, G 56.7 53 0.0012 27.6 7.2 69 86-162 2-71 (209)
136 cd03014 PRX_Atyp2cys Peroxired 56.5 13 0.00029 28.8 3.2 40 82-121 28-68 (143)
137 cd03011 TlpA_like_ScsD_MtbDsbE 54.9 11 0.00024 28.2 2.5 27 81-107 21-47 (123)
138 cd03018 PRX_AhpE_like Peroxire 53.4 16 0.00035 28.3 3.3 38 84-121 32-72 (149)
139 cd03076 GST_N_Pi GST_N family, 53.3 72 0.0016 22.0 6.5 69 84-159 2-70 (73)
140 PF06200 tify: tify domain; I 53.2 12 0.00027 23.8 2.0 19 78-96 2-20 (36)
141 cd02959 ERp19 Endoplasmic reti 51.7 45 0.00098 25.7 5.5 66 83-149 22-90 (117)
142 cd02963 TRX_DnaJ TRX domain, D 51.0 22 0.00048 26.9 3.6 66 80-149 24-92 (111)
143 cd03000 PDI_a_TMX3 PDIa family 50.9 15 0.00033 27.1 2.6 24 82-105 17-40 (104)
144 cd03044 GST_N_EF1Bgamma GST_N 49.8 84 0.0018 21.7 6.7 70 85-160 2-73 (75)
145 PLN02817 glutathione dehydroge 49.7 51 0.0011 29.3 6.2 67 89-162 70-136 (265)
146 cd02985 TRX_CDSP32 TRX family, 49.5 24 0.00052 26.2 3.5 38 82-119 17-54 (103)
147 COG1393 ArsC Arsenate reductas 49.2 34 0.00074 27.0 4.5 35 83-120 2-36 (117)
148 cd02951 SoxW SoxW family; SoxW 47.4 19 0.00041 27.4 2.8 22 81-102 15-36 (125)
149 TIGR02661 MauD methylamine deh 47.0 23 0.0005 29.6 3.4 34 83-116 77-111 (189)
150 PRK10026 arsenate reductase; P 45.9 40 0.00088 27.6 4.6 37 82-121 2-38 (141)
151 TIGR03759 conj_TIGR03759 integ 45.1 1.5E+02 0.0033 25.9 8.1 66 79-145 107-175 (200)
152 TIGR00412 redox_disulf_2 small 45.1 45 0.00097 23.6 4.2 37 85-121 3-40 (76)
153 TIGR00862 O-ClC intracellular 44.4 98 0.0021 27.2 7.1 66 90-162 17-82 (236)
154 cd03015 PRX_Typ2cys Peroxiredo 43.3 41 0.00088 27.3 4.3 38 83-120 32-72 (173)
155 COG1651 DsbG Protein-disulfide 43.1 32 0.00069 29.4 3.7 25 81-105 85-109 (244)
156 cd03042 GST_N_Zeta GST_N famil 42.4 1E+02 0.0022 20.6 6.1 69 85-159 2-72 (73)
157 cd02994 PDI_a_TMX PDIa family, 42.4 57 0.0012 23.5 4.6 35 83-117 19-55 (101)
158 cd02992 PDI_a_QSOX PDIa family 42.2 30 0.00065 26.4 3.1 37 82-118 21-61 (114)
159 PRK09481 sspA stringent starva 41.8 1.1E+02 0.0024 25.4 6.8 73 83-162 10-82 (211)
160 cd02962 TMX2 TMX2 family; comp 41.0 1E+02 0.0022 25.3 6.2 48 84-131 51-101 (152)
161 PRK10853 putative reductase; P 40.8 45 0.00098 26.1 4.0 35 84-121 2-36 (118)
162 PF05768 DUF836: Glutaredoxin- 40.6 1.3E+02 0.0027 21.5 6.1 47 83-130 1-48 (81)
163 cd03021 DsbA_GSTK DsbA family, 40.6 36 0.00079 28.6 3.7 37 83-119 2-39 (209)
164 cd03038 GST_N_etherase_LigE GS 40.2 1.3E+02 0.0028 21.1 6.1 67 89-161 13-81 (84)
165 PLN02412 probable glutathione 39.8 31 0.00068 28.2 3.1 36 84-119 33-70 (167)
166 cd03009 TryX_like_TryX_NRX Try 39.7 34 0.00073 26.1 3.1 24 82-105 20-43 (131)
167 cd02954 DIM1 Dim1 family; Dim1 39.4 69 0.0015 25.2 4.8 48 83-131 17-67 (114)
168 cd02953 DsbDgamma DsbD gamma f 39.3 72 0.0016 23.3 4.7 21 82-102 13-33 (104)
169 cd03022 DsbA_HCCA_Iso DsbA fam 39.2 30 0.00065 28.0 2.9 37 84-120 1-38 (192)
170 TIGR01616 nitro_assoc nitrogen 38.3 62 0.0013 25.8 4.5 35 84-121 3-37 (126)
171 cd03024 DsbA_FrnE DsbA family, 37.4 39 0.00084 27.6 3.3 34 84-117 1-39 (201)
172 PHA02540 61 DNA primase; Provi 36.7 64 0.0014 30.2 4.9 74 81-160 256-333 (337)
173 PRK10954 periplasmic protein d 36.3 72 0.0016 26.9 4.8 19 81-99 38-56 (207)
174 PLN02378 glutathione S-transfe 36.2 1.5E+02 0.0033 24.8 6.8 66 90-162 18-83 (213)
175 cd03077 GST_N_Alpha GST_N fami 35.8 1.6E+02 0.0034 20.7 7.7 72 84-161 2-74 (79)
176 COG0695 GrxC Glutaredoxin and 35.8 1.4E+02 0.003 21.5 5.7 71 85-159 4-74 (80)
177 PLN02473 glutathione S-transfe 34.9 1.6E+02 0.0035 24.2 6.7 75 84-162 3-77 (214)
178 PRK00522 tpx lipid hydroperoxi 34.6 49 0.0011 26.9 3.5 40 82-121 46-86 (167)
179 COG2999 GrxB Glutaredoxin 2 [P 34.3 27 0.00059 30.4 1.9 17 85-102 3-19 (215)
180 PTZ00443 Thioredoxin domain-co 32.8 1.2E+02 0.0025 26.6 5.7 49 82-130 54-104 (224)
181 PLN00410 U5 snRNP protein, DIM 32.1 2.4E+02 0.0051 23.1 7.0 61 83-147 26-89 (142)
182 COG0625 Gst Glutathione S-tran 31.7 1.7E+02 0.0036 24.2 6.3 74 84-162 1-75 (211)
183 cd03016 PRX_1cys Peroxiredoxin 31.0 1E+02 0.0023 25.9 5.0 19 87-105 33-51 (203)
184 PF04423 Rad50_zn_hook: Rad50 31.0 12 0.00027 25.2 -0.6 11 89-99 20-30 (54)
185 PF03960 ArsC: ArsC family; I 30.9 96 0.0021 23.4 4.3 32 87-121 1-32 (110)
186 cd00158 RHOD Rhodanese Homolog 29.9 66 0.0014 22.0 3.0 36 78-115 46-81 (89)
187 cd02993 PDI_a_APS_reductase PD 29.1 66 0.0014 23.9 3.1 25 81-105 22-46 (109)
188 PF06053 DUF929: Domain of unk 29.0 73 0.0016 28.6 3.8 43 78-121 54-99 (249)
189 KOG4172 Predicted E3 ubiquitin 27.7 44 0.00095 23.6 1.7 16 89-104 43-58 (62)
190 PF03227 GILT: Gamma interfero 27.1 53 0.0011 25.1 2.3 19 83-101 2-20 (108)
191 cd03048 GST_N_Ure2p_like GST_N 25.7 2.3E+02 0.005 19.5 6.7 73 84-161 2-77 (81)
192 cd03017 PRX_BCP Peroxiredoxin 25.3 82 0.0018 23.9 3.1 40 83-122 26-68 (140)
193 PTZ00102 disulphide isomerase; 24.6 1.5E+02 0.0032 27.8 5.2 77 82-161 51-136 (477)
194 cd03008 TryX_like_RdCVF Trypar 24.5 1.3E+02 0.0029 24.5 4.3 22 84-105 29-50 (146)
195 PRK11752 putative S-transferas 24.2 4.8E+02 0.01 22.8 8.6 76 84-162 44-128 (264)
196 cd03079 GST_N_Metaxin2 GST_N f 24.0 2.8E+02 0.0061 20.0 6.0 63 83-160 10-72 (74)
197 cd02952 TRP14_like Human TRX-r 24.0 2.3E+02 0.005 22.2 5.5 62 90-154 38-108 (119)
198 PTZ00256 glutathione peroxidas 23.9 85 0.0018 25.9 3.1 33 86-118 47-81 (183)
199 cd03025 DsbA_FrnE_like DsbA fa 23.0 64 0.0014 26.1 2.2 24 83-106 2-25 (193)
200 cd03058 GST_N_Tau GST_N family 22.7 2.5E+02 0.0055 18.9 8.2 70 85-160 2-71 (74)
201 KOG0191 Thioredoxin/protein di 22.2 1.3E+02 0.0028 27.9 4.3 52 79-130 46-99 (383)
202 KOG3160 Gamma-interferon induc 22.1 83 0.0018 27.7 2.8 22 80-101 39-60 (220)
203 cd02955 SSP411 TRX domain, SSP 22.1 3.5E+02 0.0075 21.3 6.2 17 84-100 19-35 (124)
204 smart00450 RHOD Rhodanese Homo 21.5 2.4E+02 0.0052 19.2 4.8 35 79-115 53-87 (100)
205 PLN02399 phospholipid hydroper 21.4 96 0.0021 27.4 3.1 37 82-118 101-139 (236)
206 KOG1752 Glutaredoxin and relat 21.0 3.2E+02 0.007 21.1 5.6 79 78-160 10-89 (104)
207 TIGR01130 ER_PDI_fam protein d 20.6 1.9E+02 0.0042 26.5 5.1 48 83-130 21-73 (462)
No 1
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=99.96 E-value=3.6e-29 Score=202.73 Aligned_cols=131 Identities=27% Similarity=0.421 Sum_probs=117.1
Q ss_pred CCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHHHH
Q 027420 77 PSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAF 155 (223)
Q Consensus 77 ~~~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~ 155 (223)
++++.+.++|+|||.|+||..+|+||.++|. .++|+|.++|++.+.+ ++..|+++|.. ..|+.+++|+.+.|+||+
T Consensus 3 ~~~~~p~~vvlyDG~C~lC~~~vrfLi~~D~-~~~i~f~~~q~e~g~~~l~~~~l~~~~~--~s~~~~~~g~~~~~sdA~ 79 (137)
T COG3011 3 PQMKKPDLVVLYDGVCPLCDGWVRFLIRRDQ-GGRIRFAALQSEPGQALLEAAGLDPEDV--DSVLLVEAGQLLVGSDAA 79 (137)
T ss_pred CCCCCCCEEEEECCcchhHHHHHHHHHHhcc-CCcEEEEeccCchhhhHHhhcCCChhhh--heeeEecCCceEeccHHH
Confidence 4567888999999999999999999999997 6999999999999876 77889999984 356777999999999999
Q ss_pred HHHHHHcCchhhhh-hhhccchhhHHHHHHHHHHhhchhccCCCCchhhhHHHhhcc
Q 027420 156 RRLYEEVGLGWVYA-ITKYEPIAKIADFVYSVWAKYRLQITGRPPLEEILEARRKNK 211 (223)
Q Consensus 156 ~~Il~~lp~~wl~~-ll~lppi~~L~d~lY~~IArnR~ri~Gr~~~c~l~~~~~~~~ 211 (223)
+++++.+|.+|++. .+...| ++++|++|++||+|||+|||+.+-|+++.+++|..
T Consensus 80 ~~i~~~L~~~Wr~~~~~~~lp-~plrD~~Y~~~A~nRyrwfGr~~~~~~~~~~~~~r 135 (137)
T COG3011 80 IRILRLLPGPWRLLVWLWILP-RPLRDRVYDFFADNRYRWFGRKDQCELPPPRERQR 135 (137)
T ss_pred HHHHHHCCcceeeeehhhccc-hHHHHHHHHHHHHhhhhhcCcccccccCCHHHhhh
Confidence 99999999999965 445555 99999999999999999999999999999997764
No 2
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=99.96 E-value=2.6e-28 Score=189.15 Aligned_cols=110 Identities=33% Similarity=0.593 Sum_probs=100.4
Q ss_pred EEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe-EEehHHHHHHHHHHcC
Q 027420 86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT-VVTDVEAFRRLYEEVG 163 (223)
Q Consensus 86 VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~-v~~G~dA~~~Il~~lp 163 (223)
|||||+||||++++++++++|. .+.|+|+|+|++.... ++..|++.|++++.+|+ +++|+ ++.|++|+.++++.+|
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~~ 78 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRLP 78 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHcC
Confidence 7999999999999999999986 6899999998877665 56789999999999999 67876 9999999999999997
Q ss_pred c--hhhhhhhhccchhhHHHHHHHHHHhhchhccCC
Q 027420 164 L--GWVYAITKYEPIAKIADFVYSVWAKYRLQITGR 197 (223)
Q Consensus 164 ~--~wl~~ll~lppi~~L~d~lY~~IArnR~ri~Gr 197 (223)
. +|+..++.+|+++++++.+|++||+||++|+||
T Consensus 79 ~~~~~l~~l~~lp~~~~l~~~~Y~~iA~~R~~~~gr 114 (114)
T PF04134_consen 79 GPWRWLAWLLRLPGIRPLADRLYRWIARNRYRWFGR 114 (114)
T ss_pred cchHHHHHHHHcccHHHHHHHHHHHHHhhHhhhhCc
Confidence 6 666778899999999999999999999999997
No 3
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.31 E-value=0.013 Score=41.70 Aligned_cols=71 Identities=17% Similarity=0.334 Sum_probs=48.3
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-----HH-hCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-----EE-NQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR 157 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~-----~~-~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~ 157 (223)
+++|+-.+||.|.....+|.++.. .+.+.++++....... +. ..|. ..+-.+.-+|+.+.|++-+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i-~~~~~~~~v~~~~~~~~~~~~l~~~~g~------~~vP~v~i~g~~igg~~~~~~ 73 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNV-KPAYEVVELDQLSNGSEIQDYLEEITGQ------RTVPNIFINGKFIGGCSDLLA 73 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC-CCCCEEEEeeCCCChHHHHHHHHHHhCC------CCCCeEEECCEEEcCHHHHHH
Confidence 478999999999999999999864 2347888877642111 11 1121 122233458999999999998
Q ss_pred HHHH
Q 027420 158 LYEE 161 (223)
Q Consensus 158 Il~~ 161 (223)
+...
T Consensus 74 ~~~~ 77 (84)
T TIGR02180 74 LYKS 77 (84)
T ss_pred HHHc
Confidence 8764
No 4
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.88 E-value=0.041 Score=38.87 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=47.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL 158 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~I 158 (223)
+++||.=..||.|.+..++|.+++. .+.++|+........+...+.. ...+-++.-+|+.+.|.+.+..+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi---~~~~~di~~~~~~~~el~~~~g---~~~vP~v~i~~~~iGg~~~~~~~ 71 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGL---PYVEINIDIFPERKAELEERTG---SSVVPQIFFNEKLVGGLTDLKSL 71 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCC---ceEEEECCCCHHHHHHHHHHhC---CCCcCEEEECCEEEeCHHHHHhh
Confidence 5788888999999999999998753 5888999875432111111111 12233445689999999988764
No 5
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.85 E-value=0.056 Score=36.44 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=46.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
+++||.-..||.|.....+|.++. -.+..+|+............+.. ...+-++.-+|+.+.|++.+.++.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~---i~~~~~di~~~~~~~~~l~~~~~---~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLG---IEFEEIDILEDGELREELKELSG---WPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC---CcEEEEECCCCHHHHHHHHHHhC---CCCcCEEEECCEEEecHHHHHHhh
Confidence 468888899999999999998875 36788888875432111110110 122323345899999999887763
No 6
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.74 E-value=0.033 Score=39.53 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=47.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H----H-HhCCCChhcccceEEEEEeCCeEEehHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I----E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFR 156 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~-~----~-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~ 156 (223)
++++|+-.+||.|....++|.++.. .+.++++...... . . +..|. ..+-++--+|+.+.|++-+.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~------~~~P~v~~~g~~igg~~~~~ 71 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQ------RTVPNVFIGGKFIGGCDDLM 71 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCC------CCCCeEEECCEEEcCHHHHH
Confidence 4788999999999999999998864 4667666654321 1 1 11111 12223345899999999998
Q ss_pred HHHHH
Q 027420 157 RLYEE 161 (223)
Q Consensus 157 ~Il~~ 161 (223)
.+.+.
T Consensus 72 ~~~~~ 76 (82)
T cd03419 72 ALHKS 76 (82)
T ss_pred HHHHc
Confidence 88764
No 7
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.39 E-value=0.071 Score=38.51 Aligned_cols=73 Identities=12% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
.+.+++||.=-+||+|.+..++|..++ -.+..+++....... +.. ...-...+-++.-+|+.+.|++.+...+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~g---i~y~~idi~~~~~~~-~~~---~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKG---YDFEEIPLGNDARGR-SLR---AVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcC---CCcEEEECCCChHHH-HHH---HHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 566789999999999999999998764 357778887653222 110 0011234445556999999999887754
No 8
>PHA03050 glutaredoxin; Provisional
Probab=95.13 E-value=0.1 Score=40.64 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=52.5
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 027420 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL 158 (223)
Q Consensus 79 ~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~I 158 (223)
....+++||-=.+||+|.+..++|..+......++.+++............+..-.....+-.+.-+|+.+.|.+-+.++
T Consensus 10 i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~l 89 (108)
T PHA03050 10 LANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLEI 89 (108)
T ss_pred hccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHHH
Confidence 35567899999999999999999988754223688888875211100000010111122343445689999999998887
Q ss_pred HHH
Q 027420 159 YEE 161 (223)
Q Consensus 159 l~~ 161 (223)
-+.
T Consensus 90 ~~~ 92 (108)
T PHA03050 90 DNM 92 (108)
T ss_pred HHc
Confidence 643
No 9
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.50 E-value=0.22 Score=34.76 Aligned_cols=70 Identities=16% Similarity=0.318 Sum_probs=48.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-H-HhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~-~-~-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
+++||.=-.||.|.....+|.+++ -.+..+++...... + + +..|. ...+-++.-+|+...|++.+..+.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~---i~~~~i~i~~~~~~~~~~~~~~~~-----~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKG---VDYEEIDVDGDPALREEMINRSGG-----RRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC---CcEEEEECCCCHHHHHHHHHHhCC-----CCccCEEEECCEEEeChHHHHHHH
Confidence 467888899999999999998875 36888888765221 1 1 11111 112334556899999999998876
Q ss_pred H
Q 027420 160 E 160 (223)
Q Consensus 160 ~ 160 (223)
+
T Consensus 73 ~ 73 (75)
T cd03418 73 R 73 (75)
T ss_pred h
Confidence 4
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=94.35 E-value=0.32 Score=35.27 Aligned_cols=73 Identities=16% Similarity=0.308 Sum_probs=48.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~ 161 (223)
+++||--..||+|.+...+|.++.. .+..+++........+...+ .....+-++.-+|+.+.|++.+..+...
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi---~y~~~dv~~~~~~~~~l~~~---~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGV---SFQEIPIDGDAAKREEMIKR---SGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCC---CcEEEECCCCHHHHHHHHHH---hCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 5777888999999999999988743 57778886553221111111 1112344555689999999998887654
No 11
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.06 E-value=0.89 Score=32.94 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=50.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCChhhh--HH-HhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISSDEYS--IE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR 157 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~--~~~~I~fvdiqs~~~~--~~-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~ 157 (223)
+++||+=.+||+|.+..++|.++.. ..-.+.++|+..+... .+ ...|... ..+-.+.-||+.+.|.+-+..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~----~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV----ETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC----CcCCEEEECCEEEcCHHHHHH
Confidence 6789999999999999999988531 1246888888865311 11 1122111 123344468999999999988
Q ss_pred HHHH
Q 027420 158 LYEE 161 (223)
Q Consensus 158 Il~~ 161 (223)
+.+.
T Consensus 78 ~~~~ 81 (85)
T PRK11200 78 YVKE 81 (85)
T ss_pred HHHH
Confidence 8765
No 12
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.04 E-value=0.7 Score=32.47 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=45.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-e---CCeEEehHHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-S---DGTVVTDVEAFRRL 158 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~-~---dG~v~~G~dA~~~I 158 (223)
+++||+...||+|++...+|..+.. .++++++.......... . ....+-++. . +|+++..+.++..-
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi---~y~~~~~~~~~~~~~~~---~---~~~~vP~l~~~~~~~~~~l~eS~~I~~y 71 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGI---PYEVVEVNPVSRKEIKW---S---SYKKVPILRVESGGDGQQLVDSSVIIST 71 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC---ceEEEECCchhHHHHHH---h---CCCccCEEEECCCCCccEEEcHHHHHHH
Confidence 5789999999999999999988753 46666664322111111 1 122333333 3 48899999999876
Q ss_pred HHH
Q 027420 159 YEE 161 (223)
Q Consensus 159 l~~ 161 (223)
+..
T Consensus 72 L~~ 74 (77)
T cd03040 72 LKT 74 (77)
T ss_pred HHH
Confidence 654
No 13
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=93.22 E-value=0.33 Score=34.98 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=27.5
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccC--CCEEEEeCCCh
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQY--GTIKFVDISSD 120 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~~--~~I~fvdiqs~ 120 (223)
..-++.||..+|+.|...+..+.+.-... ..+.++.+..+
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d 61 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVD 61 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECC
Confidence 45678899999999999888776664322 34666554443
No 14
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=92.90 E-value=0.73 Score=33.86 Aligned_cols=74 Identities=19% Similarity=0.366 Sum_probs=48.6
Q ss_pred eEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhhh-H-H-HhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEYS-I-E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL 158 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs~~~~-~-~-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~I 158 (223)
++||.=.+||+|.+..++|.++... .-.+..+|++.+... + + +..|. ....+-++.-+|+...|.+-+..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~----~~~tVP~ifi~g~~igG~~dl~~~ 77 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGK----PVETVPQIFVDEKHVGGCTDFEQL 77 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCC----CCCCcCeEEECCEEecCHHHHHHH
Confidence 4677788999999999999887431 124777888754311 1 1 11121 012444555689999999999988
Q ss_pred HHH
Q 027420 159 YEE 161 (223)
Q Consensus 159 l~~ 161 (223)
.+.
T Consensus 78 ~~~ 80 (86)
T TIGR02183 78 VKE 80 (86)
T ss_pred HHh
Confidence 764
No 15
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.84 E-value=0.8 Score=33.92 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=41.3
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 027420 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (223)
Q Consensus 91 ~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~ 160 (223)
.||+|.+..++|..+. -.+..+|+........+ +..-.....+-.+.-+|+.+.|.+-+.++.+
T Consensus 22 ~Cp~C~~ak~~L~~~~---i~y~~idv~~~~~~~~~---l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 22 RCGFSRKVVQILNQLG---VDFGTFDILEDEEVRQG---LKEYSNWPTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred CCcHHHHHHHHHHHcC---CCeEEEEcCCCHHHHHH---HHHHhCCCCCCEEEECCEEEeCHHHHHHHHH
Confidence 8999999999998874 46888887655322111 1001111233344568999999999888754
No 16
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=92.75 E-value=0.52 Score=35.84 Aligned_cols=79 Identities=13% Similarity=0.163 Sum_probs=50.9
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
...+++||==..||+|.+..++|.++. -.+..+++............+..-.....+-.+.-+|+.+.|.+-+.++.
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~---i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLG---VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcC---CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 456788888999999999999998774 34678888654321100000111111234445567899999999888876
Q ss_pred HH
Q 027420 160 EE 161 (223)
Q Consensus 160 ~~ 161 (223)
+.
T Consensus 83 ~~ 84 (99)
T TIGR02189 83 IS 84 (99)
T ss_pred Hc
Confidence 43
No 17
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=92.75 E-value=0.96 Score=32.14 Aligned_cols=72 Identities=8% Similarity=0.058 Sum_probs=44.8
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-Ee-CCeEEehHHHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VS-DGTVVTDVEAFRRLYEE 161 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv-~~-dG~v~~G~dA~~~Il~~ 161 (223)
++|++...||+|.+...+|..++. .++.+++........+...+.+. ..+-++ +. +|.+..++.|+..-+..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi---~y~~~~v~~~~~~~~~~~~~~p~---~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELEL---DVILYPCPKGSPKRDKFLEKGGK---VQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCC---cEEEEECCCChHHHHHHHHhCCC---CcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 577888899999999888877643 46777775432111111112221 333333 43 47899999999987654
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.73 E-value=0.55 Score=32.83 Aligned_cols=69 Identities=14% Similarity=0.332 Sum_probs=46.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
+++||-=..||+|.+..++|.+++ -.+..+++....... .... .....+-++.-+|+.+.|++.+.+.+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~---i~~~~~~v~~~~~~~~~~~~-----~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENG---ISYEEIPLGKDITGRSLRAV-----TGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcC---CCcEEEECCCChhHHHHHHH-----hCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 567888889999999999998764 357788887654221 1111 01123444556899999998887764
No 19
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=92.49 E-value=0.67 Score=40.73 Aligned_cols=93 Identities=20% Similarity=0.243 Sum_probs=61.2
Q ss_pred EcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc-Cchh
Q 027420 88 YDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV-GLGW 166 (223)
Q Consensus 88 YDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~l-p~~w 166 (223)
+.|+||||++...-|...+. .=.+.-||++..... ...+.+. +.+-++.-||.+.+.++.+...+... +.+.
T Consensus 17 ~~Gdcpf~qr~~m~L~~k~~-~f~vttVd~~~kp~~---f~~~sp~---~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~ 89 (221)
T KOG1422|consen 17 SLGDCPFCQRLFMTLELKGV-PFKVTTVDLSRKPEW---FLDISPG---GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPK 89 (221)
T ss_pred cCCCChhHHHHHHHHHHcCC-CceEEEeecCCCcHH---HHhhCCC---CCCCeEEeCCceeccHHHHHHHHHHhcCCCC
Confidence 47999999999988876654 235677888775422 2334443 34557778999999999999988874 5433
Q ss_pred hhhhhhccc-hhhHHHHHHHHHHh
Q 027420 167 VYAITKYEP-IAKIADFVYSVWAK 189 (223)
Q Consensus 167 l~~ll~lpp-i~~L~d~lY~~IAr 189 (223)
...+- ++ ...++.-+|..++.
T Consensus 90 ~~~~~--~~E~asag~diF~kF~~ 111 (221)
T KOG1422|consen 90 LPTLA--PPESASAGSDIFAKFSA 111 (221)
T ss_pred CcccC--CHHHHhhHHHHHHHHHH
Confidence 32221 22 45566666665554
No 20
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=92.08 E-value=0.35 Score=33.46 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=29.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
+++||+-.+||.|.....+|.+.. -.+.++|+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~---~~~~~idi~~~~ 36 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLG---AAYEWVDIEEDE 36 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcC---CceEEEeCcCCH
Confidence 478999999999999999997764 357888887654
No 21
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=92.00 E-value=0.85 Score=33.47 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=48.1
Q ss_pred CCCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeC-CeEEehHHH
Q 027420 76 DPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSD-GTVVTDVEA 154 (223)
Q Consensus 76 ~~~~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~d-G~v~~G~dA 154 (223)
++.+....++||+-..||.|.+....|..++. .++++.+......+ +...+. ....+-++..+ |.++..+.|
T Consensus 11 ~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~-~~~~~n---p~~~vPvL~~~~g~~l~eS~a 83 (89)
T cd03055 11 EPPPVPGIIRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPD-WFLEKN---PQGKVPALEIDEGKVVYESLI 83 (89)
T ss_pred CCCCCCCcEEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcH-HHHhhC---CCCCcCEEEECCCCEEECHHH
Confidence 45577888999999999999988777777643 35555554322111 111111 12334444434 889999999
Q ss_pred HHHHH
Q 027420 155 FRRLY 159 (223)
Q Consensus 155 ~~~Il 159 (223)
|..-+
T Consensus 84 I~~yL 88 (89)
T cd03055 84 ICEYL 88 (89)
T ss_pred HHHhh
Confidence 87643
No 22
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=91.96 E-value=0.78 Score=32.52 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=47.5
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~ 161 (223)
++||-=.+||.|....++|.+++ -.+..+++..+.....+...+. ....+-++.-+|+.+.|++.+..+...
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~---i~~~~~di~~~~~~~~~~~~~~---g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG---VTFTEIRVDGDPALRDEMMQRS---GRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC---CCcEEEEecCCHHHHHHHHHHh---CCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 36777789999999999998874 3578888876542211111000 012233455689999999999887754
No 23
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=91.77 E-value=0.81 Score=30.85 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=28.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++++|+-.+||.|.....++...+ -.+..+|+.+..
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~---i~~~~vdi~~~~ 36 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKG---IAFEEIDVEKDS 36 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCC---CeEEEEeccCCH
Confidence 478999999999999988887653 357788887643
No 24
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=91.76 E-value=0.78 Score=31.32 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=26.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEE--EeCCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKF--VDISS 119 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~f--vdiqs 119 (223)
++++||=.+||.|......+.++......+.| +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~ 40 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE 40 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc
Confidence 47899999999999999998876332234555 45443
No 25
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.50 E-value=0.87 Score=33.37 Aligned_cols=62 Identities=11% Similarity=0.283 Sum_probs=40.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVE 153 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~--~~~~gld~e~~~~~lhvv~~dG~v~~G~d 153 (223)
+++||--.+||+|.+..++|.++. -.++.+|+..+.... ....| ...+-++..+|..+.|++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~g---I~~~~idi~~~~~~~~~~~~~g------~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRG---FDFEMINVDRVPEAAETLRAQG------FRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCC---CceEEEECCCCHHHHHHHHHcC------CCCcCEEEECCEEEecCC
Confidence 578899999999999999997764 357788888654221 11111 123334445677777764
No 26
>PTZ00051 thioredoxin; Provisional
Probab=91.21 E-value=0.85 Score=33.17 Aligned_cols=64 Identities=27% Similarity=0.473 Sum_probs=39.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~ 149 (223)
.-++.||..+|+.|+.....+.+.......+.|+.+..+.... ...+++. ..= .+ ++..+|+..
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~P-t~-~~~~~g~~~ 84 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENIT--SMP-TF-KVFKNGSVV 84 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCc--eee-EE-EEEeCCeEE
Confidence 4467899999999999988887764434456776655543322 3445552 111 23 344677643
No 27
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.97 E-value=1.8 Score=35.90 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=52.1
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEeh---HHHHH
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTD---VEAFR 156 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G---~dA~~ 156 (223)
+..+++++||-.|+=|..|++.++..+- .+.-+...+-... -+..|++.+- .+=|-..=+|.++-| .+|+.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf---~Vk~~~~~d~~al-K~~~gIp~e~--~SCHT~VI~Gy~vEGHVPa~aI~ 97 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGF---EVKVVETDDFLAL-KRRLGIPYEM--QSCHTAVINGYYVEGHVPAEAIA 97 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCc---EEEEeecCcHHHH-HHhcCCChhh--ccccEEEEcCEEEeccCCHHHHH
Confidence 6778899999999999999999985432 3444443332221 2358887772 344544458888777 57777
Q ss_pred HHHHHcC
Q 027420 157 RLYEEVG 163 (223)
Q Consensus 157 ~Il~~lp 163 (223)
+++..-|
T Consensus 98 ~ll~~~p 104 (149)
T COG3019 98 RLLAEKP 104 (149)
T ss_pred HHHhCCC
Confidence 7766544
No 28
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.31 E-value=2.1 Score=32.32 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=41.5
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 027420 90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (223)
Q Consensus 90 G~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~ 161 (223)
.+||+|.+..++|..+.. .+..+|+........+ +..-.....+-.+.-+|+.+.|.+.+.++.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~~i---~~~~~di~~~~~~~~~---l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~~ 90 (97)
T TIGR00365 25 PQCGFSARAVQILKACGV---PFAYVNVLEDPEIRQG---IKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQS 90 (97)
T ss_pred CCCchHHHHHHHHHHcCC---CEEEEECCCCHHHHHH---HHHHhCCCCCCEEEECCEEEeChHHHHHHHHC
Confidence 479999999999988753 5778888544322111 10001112333344589999999999887653
No 29
>PF13728 TraF: F plasmid transfer operon protein
Probab=90.17 E-value=0.26 Score=42.77 Aligned_cols=40 Identities=23% Similarity=0.683 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCC-CEEEEeCC
Q 027420 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYG-TIKFVDIS 118 (223)
Q Consensus 79 ~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~-~I~fvdiq 118 (223)
.+.+.+++||+|+||+|....-.|+......+ .+..+++.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 36788999999999999999988887754221 34445544
No 30
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=90.01 E-value=0.54 Score=38.74 Aligned_cols=41 Identities=17% Similarity=0.514 Sum_probs=29.9
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCC
Q 027420 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISS 119 (223)
Q Consensus 79 ~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~-~~I~fvdiqs 119 (223)
.++.+++.||-.+||.|+.++-.+.+.-... -.+-.+++.+
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 5777899999999999999999988774322 2344454443
No 31
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=89.92 E-value=1.2 Score=29.15 Aligned_cols=68 Identities=24% Similarity=0.305 Sum_probs=40.8
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL 158 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~I 158 (223)
++++-..||.|.+...++...+. .++++.+........+...+. -...+-++..+|..+.++.|+.+-
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~---~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL---PYELVPVDLGEGEQEEFLALN---PLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC---CcEEEEeCCCCCCCHHHHhcC---CCCCCCEEEECCEEEEcHHHHHHH
Confidence 67888889999988888877653 355555544322110011111 112333555678999999888764
No 32
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=89.74 E-value=0.28 Score=43.84 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=30.0
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 027420 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (223)
Q Consensus 79 ~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiq 118 (223)
.+++.+++||+|+||+|...+-.|+.... .-.|...+++
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~-~yg~~v~~VS 180 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRD-TYGLSVIPVS 180 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHH-HhCCeEEEEe
Confidence 35689999999999999999999988854 2345554444
No 33
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=89.52 E-value=3.2 Score=28.61 Aligned_cols=67 Identities=12% Similarity=0.271 Sum_probs=40.8
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-EeCCeEEehHHHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv-~~dG~v~~G~dA~~~Il 159 (223)
++++.-.||+|.+..-.|..++. .++++++.......... +. ..+.+-++ +.||.++.++.|+.+-+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl---~~~~~~~~~~~~~~~~~--~~---~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI---PVEQIILQNDDEATPIR--MI---GAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC---CeEEEECCCCchHHHHH--hc---CCCccCEEEeCCCeEeehHHHHHHHH
Confidence 57888889999988777766643 46666655332111111 11 12334344 44589999999988644
No 34
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=88.91 E-value=1 Score=33.95 Aligned_cols=42 Identities=24% Similarity=0.445 Sum_probs=28.6
Q ss_pred CCCceEEEEcC-CChhhHHHHHHHHhhcc--cCCCEEEEeCCChh
Q 027420 80 ENWKIKMLYDG-DCPLCMREVNMLKERNK--QYGTIKFVDISSDE 121 (223)
Q Consensus 80 ~~~ki~VlYDG-~CpLC~~~v~~L~~~d~--~~~~I~fvdiqs~~ 121 (223)
..+-+++||.+ +||.|..++.-+.++-. ....+.++-++.+.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~ 69 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD 69 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence 35667889999 99999999977766531 12356665555543
No 35
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=88.43 E-value=0.4 Score=43.04 Aligned_cols=38 Identities=16% Similarity=0.405 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 027420 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI 117 (223)
Q Consensus 79 ~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdi 117 (223)
.+++.+++||+|+||+|...+-.|+..... -.|...++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~-ygi~v~~V 186 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKE-YGISVIPI 186 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHH-hCCeEEEE
Confidence 366899999999999999999999777542 33444443
No 36
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=87.70 E-value=2.3 Score=31.66 Aligned_cols=38 Identities=13% Similarity=0.318 Sum_probs=26.4
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCC
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDIS 118 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvdiq 118 (223)
..-++.||-.+||.|+.++..+.+.... .+.+.++-+.
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~ 60 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS 60 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe
Confidence 3456889999999999999888775321 2346555553
No 37
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=87.16 E-value=2.5 Score=30.37 Aligned_cols=51 Identities=24% Similarity=0.422 Sum_probs=33.7
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccCC-CEEEEeCCChhhhH-HHhCCCC
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQYG-TIKFVDISSDEYSI-EENQGLD 131 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~-~I~fvdiqs~~~~~-~~~~gld 131 (223)
..-++.||..+|+.|......+.+...... .+.|..+....... .+.++++
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~ 70 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVK 70 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCS
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCC
Confidence 445688999999999999988866643223 66665555544333 4556663
No 38
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=86.73 E-value=1.2 Score=39.07 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEE
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFV 115 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fv 115 (223)
....++||.|=+||+|++.-..+.+++...-++.+.
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 456789999999999999999998876422345554
No 39
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=86.70 E-value=4.3 Score=27.91 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=41.3
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC--ChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS--SDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiq--s~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
++|||...||.|.+..-.|...+. .++.+.+. ..+....+...+.+ ...+-++..+|.....+.|+..-+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNP---QHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCc---CCCCCEEEECCEEEEcHHHHHHHH
Confidence 478999999999988777877643 34444443 21111011112222 233444555788999999987644
No 40
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=86.56 E-value=2.3 Score=30.64 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=39.0
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhc---ccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe--EEehH
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERN---KQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT--VVTDV 152 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d---~~~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~--v~~G~ 152 (223)
...-+++||+.+|+.|+.....+.+.. ...+.+.+..+....... .+.+++.. .=.+.+++.++. .+.|.
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~---~P~~~~~~~~~~~~~~~g~ 88 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG---FPTIKFFPKGKKPVDYEGG 88 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc---CCEEEEecCCCcceeecCC
Confidence 344579999999999998766554432 111257776555443322 34456532 224556655542 34443
No 41
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=86.51 E-value=2.8 Score=29.33 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=27.4
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
+||-=..||.|....++|.+++ -.+..+|+..+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~---i~~~~~di~~~~ 35 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHG---IAFEEINIDEQP 35 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCC---CceEEEECCCCH
Confidence 5666688999999999998874 368889998754
No 42
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=86.46 E-value=4.9 Score=27.46 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=42.6
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~ 160 (223)
+++++...||.|.+....+...+. .++.+.+....... +...+.+ .+.+-++..+|.....+.|+..-+.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~-~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGV---SVEIIDVDPDNPPE-DLAELNP---YGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC---ccEEEEcCCCCCCH-HHHhhCC---CCCCCEEEECCEEEEcHHHHHHHHH
Confidence 368888999999998888877643 34444443221111 1111221 2344455567789999999887654
No 43
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=86.37 E-value=1.2 Score=34.50 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCC--CEEEEeC
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYG--TIKFVDI 117 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~--~I~fvdi 117 (223)
....+++|+|=.||.|...-..+.+.....+ ++.|.++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 4567899999999999998888776432122 4566555
No 44
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=86.35 E-value=1.7 Score=30.39 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=20.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhh
Q 027420 83 KIKMLYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~ 105 (223)
+++|||-.+||.|......+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l 24 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEV 24 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHH
Confidence 47899999999999999988765
No 45
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=86.06 E-value=2.8 Score=30.55 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=38.3
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcc
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTV 135 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvdiqs~~~~~-~~~~gld~e~~ 135 (223)
..-+++||+.+|+-|......+.+.... .+.+.|+-+..++... .+..|+..+..
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~ 69 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDL 69 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhC
Confidence 3456778999999999999988776432 2567877777765433 45678875433
No 46
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=85.94 E-value=3.4 Score=30.35 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=36.9
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~ 149 (223)
..-+++||..+|+.|......+...... .+.+.|..+..+.... ....++.. . -.+.++ .+|++.
T Consensus 14 ~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~--v-Pt~~i~-~~g~~v 80 (97)
T cd02949 14 RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMG--T-PTVQFF-KDKELV 80 (97)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCee--c-cEEEEE-ECCeEE
Confidence 3456789999999999998888664321 1346555444332222 23455521 1 124455 577754
No 47
>PRK10824 glutaredoxin-4; Provisional
Probab=85.69 E-value=2.7 Score=33.29 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=45.1
Q ss_pred CCCceEEEEcC-----CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHH
Q 027420 80 ENWKIKMLYDG-----DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEA 154 (223)
Q Consensus 80 ~~~ki~VlYDG-----~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA 154 (223)
...+++||==| .||+|.+..+.|..+.. .+..+++......... +..-.-...+--|--+|+.+.|.|-
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i---~~~~idi~~d~~~~~~---l~~~sg~~TVPQIFI~G~~IGG~dd 86 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGE---RFAYVDILQNPDIRAE---LPKYANWPTFPQLWVDGELVGGCDI 86 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCC---CceEEEecCCHHHHHH---HHHHhCCCCCCeEEECCEEEcChHH
Confidence 44555666555 89999999999988753 4556666554321110 1000011112122348999999999
Q ss_pred HHHHHHH
Q 027420 155 FRRLYEE 161 (223)
Q Consensus 155 ~~~Il~~ 161 (223)
+.++.+.
T Consensus 87 l~~l~~~ 93 (115)
T PRK10824 87 VIEMYQR 93 (115)
T ss_pred HHHHHHC
Confidence 9887753
No 48
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=85.63 E-value=3.2 Score=28.70 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=40.3
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-eCCeEEehHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRR 157 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~ 157 (223)
++|+-..||+|.+....|..++. .++++.+....... +...+.+ .+.+-++. .||..+..+.|+.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~-~~~~~np---~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPA-EMLAASP---KGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCH-HHHHHCC---CCCCCEEEECCCcEEecHHHHHH
Confidence 67778899999999888887754 35555544322111 1112222 23344444 46999999998875
No 49
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=85.43 E-value=2.8 Score=33.62 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=25.8
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISS 119 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~--~~~~I~fvdiqs 119 (223)
.-+++||..+|+.|......+.+... ....+.++.+..
T Consensus 63 ~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~ 102 (173)
T PRK03147 63 GVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNV 102 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 35688999999999998777755532 123466665543
No 50
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=85.42 E-value=5.3 Score=33.22 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=25.6
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiq 118 (223)
.-++.||..+||.|+.++-.+.+... ..+.++-+.
T Consensus 70 ~vvv~FwatwC~~C~~e~p~l~~l~~--~~~~vi~v~ 104 (185)
T PRK15412 70 PVLLNVWATWCPTCRAEHQYLNQLSA--QGIRVVGMN 104 (185)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHH--cCCEEEEEE
Confidence 45677999999999999999988743 234444443
No 51
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=85.39 E-value=1.5 Score=38.84 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeC
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDI 117 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~-~~I~fvdi 117 (223)
....++||.|=+||+|++.-.-+..+.... -+++++++
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 445689999999999999988877654311 24566654
No 52
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=85.18 E-value=1.2 Score=27.45 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=26.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhh---cccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKER---NKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~---d~~~~~I~fvdiqs~~ 121 (223)
++++|..+|+.|......+.+. .. .-.+..+++....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 40 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNK-GVKFEAVDVDEDP 40 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCC-CcEEEEEEcCCCh
Confidence 4789999999999999998864 22 2345555555543
No 53
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=85.12 E-value=2.2 Score=30.07 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=38.8
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDG 146 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~---~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG 146 (223)
.-+++||..+|+.|......+.+.... ...+.|..+....... .+.++++.- =.+.++.++|
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~---Pt~~~~~~~~ 82 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGY---PTIKLFPNGS 82 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCC---CEEEEEcCCC
Confidence 567889999999999988877654221 2578887776544222 445666321 2354565443
No 54
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=84.93 E-value=3.5 Score=27.61 Aligned_cols=65 Identities=23% Similarity=0.397 Sum_probs=38.1
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEA 154 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA 154 (223)
+++|+-.+||.|.+....|...+ -.+..+++........+...+. -...+-++..+|+.+.|.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~---i~~~~~~i~~~~~~~~~~~~~~---~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERG---IPFEEVDVDEDPEALEELKKLN---GYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCC---CCeEEEeCCCCHHHHHHHHHHc---CCcccCEEEECCEEEecCCH
Confidence 57788888999999888887653 3577788765321111110010 11233344457788888654
No 55
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=84.68 E-value=4.3 Score=36.44 Aligned_cols=40 Identities=20% Similarity=0.585 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCC-CEEEEeCCC
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYG-TIKFVDISS 119 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~-~I~fvdiqs 119 (223)
....++.||-++||.|...+-.|.......+ .|..+++.+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~ 206 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDG 206 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCC
Confidence 3457889999999999999988877753222 355566554
No 56
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=84.63 E-value=1.7 Score=36.48 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI 117 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdi 117 (223)
....+++|+|-+||+|++.-..+.... ..-++.++.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~-~~v~v~~~~~ 113 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNA-DGVTVRIFPV 113 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhcc-CceEEEEEEc
Confidence 567889999999999999999887632 2345565544
No 57
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=84.19 E-value=5.8 Score=26.93 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=40.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL 158 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~--~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~I 158 (223)
++++|...||.|.+..-.+...+. .++.+++..... .......+.+ ...+-++..+|.++..+.|+..-
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p---~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNP---NGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCC---CCCCCEEEECCEEEEcHHHHHHH
Confidence 478889999999988777776643 344444432110 0001111221 23344555678999999998764
No 58
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=82.96 E-value=1.4 Score=32.74 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=17.3
Q ss_pred CCceEEEEcCCChhhHHHHHHHHh
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKE 104 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~ 104 (223)
...+++|+|-+||.|...-..+..
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHH
Confidence 445788999999999987777654
No 59
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=82.94 E-value=8.3 Score=26.05 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=38.1
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh---hhhHHHhCCCChhcccceEEEE-EeCCeEEehHHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD---EYSIEENQGLDYKTVMGSIHAI-VSDGTVVTDVEAFRRL 158 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~---~~~~~~~~gld~e~~~~~lhvv-~~dG~v~~G~dA~~~I 158 (223)
+||+-..||.|.+..-.|..++. .++.+.+... .... +...+.+ .+.+-++ .++|..+..+.|+..-
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l---~~~~~~v~~~~~~~~~~-~~~~~~p---~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI---DVPLVTVDLAAGEQRSP-EFLAKNP---AGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC---CceEEEeecccCccCCH-HHHhhCC---CCCCCEEEeCCCCEEecHHHHHHH
Confidence 56777789999998888877653 2333333221 1111 1111221 2333344 3678899999998764
No 60
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=82.34 E-value=2.5 Score=31.45 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=31.9
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEE--EeCCChhhhHHHhCCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKF--VDISSDEYSIEENQGLD 131 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~f--vdiqs~~~~~~~~~gld 131 (223)
-++.+|++.+|+.|......+.+.....+.|.| +|+...... ...+|+.
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~-a~~~~V~ 64 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDE-VEERGIM 64 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHH-HHHcCCc
Confidence 368999999999999998888777432334555 554443222 2456653
No 61
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=82.27 E-value=7.8 Score=27.83 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=39.3
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV 148 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v 148 (223)
..=++.||-.+|+.|+.....+.+.... ...+.|+.+....... ...+++.. .- .+.++ .+|+.
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~--~P-t~~~~-~~g~~ 80 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITA--VP-TFVFF-RNGTI 80 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCcc--cc-EEEEE-ECCEE
Confidence 3445889999999999998888776432 3467777665543322 23455532 22 23344 57774
No 62
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=82.01 E-value=4 Score=31.50 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=27.0
Q ss_pred CCceEEEEcCCChh-hHHHHHHHHhhcccC-----CCEEEEeCCC
Q 027420 81 NWKIKMLYDGDCPL-CMREVNMLKERNKQY-----GTIKFVDISS 119 (223)
Q Consensus 81 ~~ki~VlYDG~CpL-C~~~v~~L~~~d~~~-----~~I~fvdiqs 119 (223)
.+-+++||-.+|+. |..++..+.+..... +.+.++-++.
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 45678889999996 999988887653211 1477766653
No 63
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=3.6 Score=30.79 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=32.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS 123 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~ 123 (223)
++++||-..||=|.-.+..+++... ..++|+|.+....
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v---~yd~VeIt~Sm~N 40 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNV---DYDFVEITESMAN 40 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCC---Cceeeehhhhhhh
Confidence 4589999999999999999988754 5899999887654
No 64
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=81.80 E-value=4.5 Score=34.48 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=40.4
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEE--EeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHH
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKF--VDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEA 154 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~f--vdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA 154 (223)
.-.+++||..+||.|......+.+.....+.+.+ +|....... ...+|+..- -.+ ++..+|+.+.|...
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~-~~~~~V~~v---Ptl-~i~~~~~~~~G~~~ 204 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDL-AEKYGVMSV---PKI-VINKGVEEFVGAYP 204 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHH-HHHhCCccC---CEE-EEecCCEEEECCCC
Confidence 3356778999999999888888776432345655 554443322 234555211 123 45566765777543
No 65
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=81.44 E-value=2.4 Score=29.70 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=24.5
Q ss_pred eEEEEcCCChhhHHHHHHHHhh---cccCCCEEEEeC
Q 027420 84 IKMLYDGDCPLCMREVNMLKER---NKQYGTIKFVDI 117 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~---d~~~~~I~fvdi 117 (223)
+++|+|=.||.|...-..+.+. ....-.+.++++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 4789999999999999999876 222234555554
No 66
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=81.40 E-value=2.5 Score=32.61 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=29.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||.-..||.|++..+||..++. .+.++++..+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i---~~~~idi~~~~ 35 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGV---DYTAIDIVEEP 35 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCC---ceEEecccCCc
Confidence 478999999999999999988753 58888886544
No 67
>PTZ00062 glutaredoxin; Provisional
Probab=81.32 E-value=5.2 Score=34.66 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=47.2
Q ss_pred CCCCceEEEEcC-----CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHH
Q 027420 79 PENWKIKMLYDG-----DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVE 153 (223)
Q Consensus 79 ~~~~ki~VlYDG-----~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~d 153 (223)
....+++||==| .||+|++.+++|..+.. .+..+|+........ ++..-.-...+-.+.-+|+.+.|.+
T Consensus 110 i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i---~y~~~DI~~d~~~~~---~l~~~sg~~TvPqVfI~G~~IGG~d 183 (204)
T PTZ00062 110 IRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGV---KYETYNIFEDPDLRE---ELKVYSNWPTYPQLYVNGELIGGHD 183 (204)
T ss_pred HhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCC---CEEEEEcCCCHHHHH---HHHHHhCCCCCCeEEECCEEEcChH
Confidence 455666666555 79999999999988743 477778875432211 1100001112223335899999999
Q ss_pred HHHHHHH
Q 027420 154 AFRRLYE 160 (223)
Q Consensus 154 A~~~Il~ 160 (223)
-+.++.+
T Consensus 184 ~l~~l~~ 190 (204)
T PTZ00062 184 IIKELYE 190 (204)
T ss_pred HHHHHHH
Confidence 8888765
No 68
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=81.18 E-value=6.6 Score=30.18 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=40.6
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEe
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVT 150 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~~ 150 (223)
..-++.||..+|+-|......+.++......+.|+.+..+.... .+.+++. ..= .+ ++-.+|+...
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~--~vP-t~-l~fk~G~~v~ 89 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIK--VLP-TV-ILFKNGKTVD 89 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCc--cCC-EE-EEEECCEEEE
Confidence 44567899999999998888887765434457776666554432 2344442 111 22 4446777553
No 69
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=80.90 E-value=5.6 Score=30.13 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=41.4
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 027420 90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 90 G~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~l 162 (223)
|.||+|++..-.|..+.. .++.+++......+ ....+.+. +.+-++..+|.++..+.++...+...
T Consensus 20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~-~~~~~nP~---g~vPvL~~~~~~i~eS~~I~eYLde~ 85 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPE-DLKDLAPG---TQPPFLLYNGEVKTDNNKIEEFLEET 85 (91)
T ss_pred CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCH-HHHHhCCC---CCCCEEEECCEEecCHHHHHHHHHHH
Confidence 789999999888877643 35555443221111 11122222 33445556889999999999988764
No 70
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=80.87 E-value=7.1 Score=29.62 Aligned_cols=65 Identities=17% Similarity=0.345 Sum_probs=39.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEe
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVT 150 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~ 150 (223)
.-++.||..+|+-|......+.++......+.|+.+..+.....+.+++. .. =.+ ++..+|+...
T Consensus 26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~--~~-Pt~-~~f~~G~~v~ 90 (113)
T cd02957 26 RVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIK--VL-PTL-LVYKNGELID 90 (113)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCC--cC-CEE-EEEECCEEEE
Confidence 34567999999999998888877654445577766655542112344552 11 123 3446777553
No 71
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=80.53 E-value=7.7 Score=31.09 Aligned_cols=64 Identities=8% Similarity=0.184 Sum_probs=37.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc-CCC--EEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGT--IKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~--I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~ 149 (223)
-++.||=.+|+-|......+.+.... .+. |..+++....... ...+++.- .=.+.+++.+|++.
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~---iPt~v~~~~~G~~v 90 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG---IPHFVFLDREGNEE 90 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC---CCEEEEECCCCCEE
Confidence 45678999999999998888765321 123 4455655433222 34555531 12344666678754
No 72
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=80.48 E-value=8.3 Score=26.29 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=26.9
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS 119 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs 119 (223)
.-+++||-.+|+.|......+.+.....+.+.|..+..
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 49 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDV 49 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEEC
Confidence 34788999999999998888877643235566654443
No 73
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=80.44 E-value=2.2 Score=36.38 Aligned_cols=39 Identities=26% Similarity=0.638 Sum_probs=29.0
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 027420 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (223)
Q Consensus 79 ~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiq 118 (223)
..+.++++||-.+||.|..++-.|++..... .+.++.+.
T Consensus 68 lsd~~lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs 106 (181)
T PRK13728 68 LADWKVVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYT 106 (181)
T ss_pred hhHceEEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEE
Confidence 5666799999999999999998887774322 35554443
No 74
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=80.22 E-value=17 Score=34.48 Aligned_cols=72 Identities=10% Similarity=0.244 Sum_probs=47.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHH--HhCC---CChhcccceEEEEEeCCeEEehHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIE--ENQG---LDYKTVMGSIHAIVSDGTVVTDVEAFRR 157 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~--~~~g---ld~e~~~~~lhvv~~dG~v~~G~dA~~~ 157 (223)
+++||--.+||.|.+..++|.+++. .+..+|+........ +..+ +-.......+-.+.-+|+.+.|.+.+..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi---~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDI---PFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC---CeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 5899999999999999999988753 577888875432111 1110 1111122334345568999999999876
No 75
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=79.07 E-value=3.7 Score=29.69 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=26.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCCh
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSD 120 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~---~~~I~fvdiqs~ 120 (223)
.-++.||..+|+.|......+.+.... ...+.|..+...
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 345779999999999988877666421 134777555443
No 76
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=78.75 E-value=5 Score=31.01 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=29.6
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||+-..|+.|++..+||..++ -.+.++|+..+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~g---i~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQ---IPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC---CceEEEecCCCc
Confidence 67999999999999999998874 368999986543
No 77
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=78.34 E-value=4.6 Score=29.66 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=30.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGL 130 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvdiqs~~~~~-~~~~gl 130 (223)
.-++.||-.+|+.|......+.+.... .+.+.|..+.-+.... ...+++
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i 71 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI 71 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC
Confidence 456779999999999988877665321 2346554444333222 234555
No 78
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=78.21 E-value=4.8 Score=32.15 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=29.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY 122 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~ 122 (223)
++||.-..|+.|++..+||..++. .+.++|+..+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi---~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDI---PFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC---CcEEeeccCChh
Confidence 689999999999999999988753 588888865543
No 79
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=78.14 E-value=16 Score=25.55 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=45.2
Q ss_pred EEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 027420 86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 86 VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~l 162 (223)
+++...||+|.+..-.++.+.. .++++++...+... .... . ....+-++..||.++.++.+|..-+...
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~--~---p~~~vPvL~~~g~~l~dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKL--N---PKGKVPVLVDDGEVLTDSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHH--S---TTSBSSEEEETTEEEESHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhh--c---ccccceEEEECCEEEeCHHHHHHHHHHH
Confidence 5778899999998888877653 46666655433221 1111 1 2233445557899999999999877654
No 80
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=78.04 E-value=5 Score=31.08 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=29.4
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||+=..||.|++..+||.+.+ -.+.++|+....
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~---i~~~~idi~~~~ 35 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANG---IEYQFIDIGEDG 35 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcC---CceEEEecCCCh
Confidence 47899999999999999998875 368999987644
No 81
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=77.48 E-value=6 Score=30.38 Aligned_cols=47 Identities=17% Similarity=0.382 Sum_probs=28.2
Q ss_pred ceEEEEc-CCChhhHHHHHHHHhhcccCCCE--EEEeCCChhhhHHHhCCC
Q 027420 83 KIKMLYD-GDCPLCMREVNMLKERNKQYGTI--KFVDISSDEYSIEENQGL 130 (223)
Q Consensus 83 ki~VlYD-G~CpLC~~~v~~L~~~d~~~~~I--~fvdiqs~~~~~~~~~gl 130 (223)
.++|+|. .+||.|.....++.+.....+.+ ..+|+...... ...+++
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l-~~~~~v 73 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEK-AEKYGV 73 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHH-HHHcCC
Confidence 3566655 59999998888887765323445 44555543221 344555
No 82
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=76.26 E-value=13 Score=26.23 Aligned_cols=69 Identities=9% Similarity=0.012 Sum_probs=40.8
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~--~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
++||...|+.|.+..-.+..++. .++++.+.-... ...+...+.+. ..+-++..+|.++..+.||..-+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~---g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPT---GEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcC---CCCCEEEECCEEEEcHHHHHHHh
Confidence 67888889999887766666543 355554332111 11112223332 34445556899999999987643
No 83
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=75.88 E-value=17 Score=29.65 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=24.6
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI 117 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdi 117 (223)
.-++.||-.+||.|..++..+.+... ..+.++-+
T Consensus 65 ~vll~F~a~wC~~C~~~~p~l~~l~~--~~~~vi~V 98 (173)
T TIGR00385 65 PVLLNVWASWCPPCRAEHPYLNELAK--DGLPIVGV 98 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHH--cCCEEEEE
Confidence 34577899999999999998877753 23444443
No 84
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=75.69 E-value=9.8 Score=26.99 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=29.8
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGLD 131 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~-~~~~I~fvdiqs~~~~~-~~~~gld 131 (223)
.-++.||-.+|+.|+.....+.+... ..+.+.|..+....... ...+|+.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 67 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIR 67 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCC
Confidence 45688999999999988877766531 12346555443332222 3345553
No 85
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=75.34 E-value=4.8 Score=30.34 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=28.4
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD 120 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~ 120 (223)
++||+=..||.|+...+||...+. .++++|+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i---~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGI---EYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCC---CcEEEeeccC
Confidence 478999999999999999988753 5888888653
No 86
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=74.96 E-value=14 Score=26.62 Aligned_cols=63 Identities=10% Similarity=0.189 Sum_probs=37.1
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV 148 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v 148 (223)
.-++.||-.+|+-|......+.+.... .+.+.+..+..+.... ...+++.. .=.+.++ .+|+.
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~---~Pt~~~~-~~g~~ 78 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQA---LPTVYLF-AAGQP 78 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCC---CCEEEEE-eCCEE
Confidence 446889999999999998888665321 1356665554443332 23455531 1234345 47764
No 87
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=74.47 E-value=20 Score=24.66 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=41.3
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~--~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~ 160 (223)
+++|+...||.|.+..-.+...+. .++++.+..... .......+.+ .+.+-++..+|..+..+.|+..-+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~P---~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV---DYELVPVDLTKGEHKSPEHLARNP---FGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC---CcEEEEeCccccccCCHHHHhhCC---CCCCCEEEECCEEEEcHHHHHHHHh
Confidence 467778889999987777766543 355544432111 0011112222 2334455567899999999987654
No 88
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=73.79 E-value=22 Score=29.18 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=41.6
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChh-hhH-HHh-CCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 027420 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDE-YSI-EEN-QGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (223)
Q Consensus 91 ~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~-~~~-~~~-~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~ 161 (223)
.||.|.+..++|..+.. .+.-+|++... ..+ +.. .|-. .-...+-.+.-+|+.+.|.+-+.++...
T Consensus 15 t~~~C~~ak~iL~~~~V---~~~e~DVs~~~~~~~EL~~~~g~~--~~~~tvPqVFI~G~~IGG~del~~L~e~ 83 (147)
T cd03031 15 TFEDCNNVRAILESFRV---KFDERDVSMDSGFREELRELLGAE--LKAVSLPRVFVDGRYLGGAEEVLRLNES 83 (147)
T ss_pred cChhHHHHHHHHHHCCC---cEEEEECCCCHHHHHHHHHHhCCC--CCCCCCCEEEECCEEEecHHHHHHHHHc
Confidence 69999999999988743 57778886543 222 211 1110 0011232344589999999999987754
No 89
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=72.83 E-value=3.6 Score=29.65 Aligned_cols=38 Identities=34% Similarity=0.578 Sum_probs=26.7
Q ss_pred eEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~---~~~I~fvdiqs~~ 121 (223)
++.|+..+|+-|..++..|.++-.. .+.++++-++.+.
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~ 45 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE 45 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 5778999999999999988776322 2477777666553
No 90
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=72.56 E-value=4.7 Score=31.70 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=19.3
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHh
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKE 104 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~ 104 (223)
....+++|+|=.||.|...-..+.+
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhh
Confidence 4557899999999999998776644
No 91
>PRK10996 thioredoxin 2; Provisional
Probab=70.30 E-value=22 Score=28.24 Aligned_cols=65 Identities=15% Similarity=0.285 Sum_probs=36.9
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~-~~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~ 149 (223)
..-++.||-.+|+.|+.....+..... ..+.+.|+.+..+.... ...+++.- . =.+ ++..+|+.+
T Consensus 53 k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~--~-Ptl-ii~~~G~~v 119 (139)
T PRK10996 53 LPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRS--I-PTI-MIFKNGQVV 119 (139)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCc--c-CEE-EEEECCEEE
Confidence 344688999999999988776655421 12457775544333222 33555521 1 123 334578754
No 92
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=70.24 E-value=24 Score=24.18 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=36.7
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 027420 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (223)
Q Consensus 91 ~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~ 160 (223)
.||.|.+...+++..+. .++.+++.... +.+ ...+-++..+|.++.++.++..-+.
T Consensus 15 ~sp~~~~v~~~L~~~~i---~~~~~~~~~~~--------~~p---~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 15 LSPECLKVETYLRMAGI---PYEVVFSSNPW--------RSP---TGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCHHHHHHHHHHHhCCC---ceEEEecCCcc--------cCC---CcccCEEEECCEEEcCHHHHHHHHh
Confidence 79999999888877643 45555544321 111 2334456668999999999887554
No 93
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=70.21 E-value=8.8 Score=27.73 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=29.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGL 130 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvdiqs~~~~~-~~~~gl 130 (223)
.-+++||-.+|+.|......+.+.... .+.+.|..+..+.... ....++
T Consensus 20 ~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i 70 (103)
T cd03001 20 VWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV 70 (103)
T ss_pred cEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC
Confidence 357889999999999987766554311 2445554444332222 334555
No 94
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=69.82 E-value=8.7 Score=25.65 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=28.6
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||-=-.||.|....++|.+++. .+.++|+....
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i---~y~~~dv~~~~ 35 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGI---PYEEVDVDEDE 35 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTB---EEEEEEGGGSH
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCC---eeeEcccccch
Confidence 466777899999999999988753 58999998874
No 95
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=69.49 E-value=6.9 Score=29.31 Aligned_cols=39 Identities=13% Similarity=0.345 Sum_probs=27.1
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS 119 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs 119 (223)
..-++.||=.+|+.|......+.+.....+.+.++.+..
T Consensus 19 ~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~ 57 (100)
T cd02999 19 DYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEE 57 (100)
T ss_pred CEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEEC
Confidence 335678999999999999888876643234455655543
No 96
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=69.44 E-value=7.9 Score=27.88 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=27.3
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCChh
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSDE 121 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~---~~~I~fvdiqs~~ 121 (223)
.-++.||..+|+.|+.....+...... .+.+.+..+....
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 457889999999999877766554321 2457776665443
No 97
>PRK12559 transcriptional regulator Spx; Provisional
Probab=69.23 E-value=9.9 Score=30.43 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=28.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||.-..|+.|+...+||...+. .+.++|+..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi---~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQI---DYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC---CeEEEEeeCCc
Confidence 689999999999999999988753 58888876543
No 98
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=68.97 E-value=25 Score=25.99 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=35.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccC--CCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeE
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQY--GTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTV 148 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~--~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v 148 (223)
-++.||=.+|+-|......+.+..... ..+.|..+..+.....+.+++..- =.+ ++..+|+.
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~---Pt~-~~~~~g~~ 83 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCE---PTF-LFYKNGEL 83 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcC---cEE-EEEECCEE
Confidence 457899999999999988876652211 235555444332222344554322 123 34467764
No 99
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=68.88 E-value=9.5 Score=29.27 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=29.3
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||+-..|+-|++..+||...+ -.+.++++..+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~---i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARG---VAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcC---CCeEEEecccCC
Confidence 47999999999999999998874 368888887654
No 100
>PRK09381 trxA thioredoxin; Provisional
Probab=68.77 E-value=20 Score=26.46 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=35.4
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhccc-CCCE--EEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEE
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTI--KFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVV 149 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I--~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~ 149 (223)
..-++.||-.+||.|......+.+.... .+.+ ..+|+...... ...+++. ..= .+ ++..+|+..
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v~--~~P-t~-~~~~~G~~~ 88 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT-APKYGIR--GIP-TL-LLFKNGEVA 88 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH-HHhCCCC--cCC-EE-EEEeCCeEE
Confidence 3456789999999999998777654221 1334 44555443322 2344442 111 23 344677744
No 101
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=68.55 E-value=11 Score=27.52 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=29.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEE--EeCCChhhhHHHhCCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKF--VDISSDEYSIEENQGL 130 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~f--vdiqs~~~~~~~~~gl 130 (223)
-++.||-.+|+.|......+.+.... .+.+.| +|+..... ..+.+++
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v 70 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGV 70 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCC
Confidence 46789999999999988877665322 234665 55544322 1334555
No 102
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=68.44 E-value=36 Score=23.50 Aligned_cols=66 Identities=24% Similarity=0.244 Sum_probs=38.6
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-HHHhCCCChhcccceEE-EEEeCCeEEehHHHHHHHHH
Q 027420 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-IEENQGLDYKTVMGSIH-AIVSDGTVVTDVEAFRRLYE 160 (223)
Q Consensus 91 ~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~-~~~~~gld~e~~~~~lh-vv~~dG~v~~G~dA~~~Il~ 160 (223)
-||+|.+..-.+..+.- ...+.+++....... ..+...+++. ..+- +++.+|++...+.++.+-+.
T Consensus 1 ~sP~a~Rv~i~l~~~gl-~~~~~~v~~~~~~~~~~~~~~~~~p~---~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGL-PYEIKVVPLIPKGEQKPPEFLALNPR---GKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTG-TCEEEEEETTTTBCTTCHBHHHHSTT----SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCC-CCEEEEEeeecCccccChhhhccCcC---eEEEEEEECCCCEeeCHHHHHHHHh
Confidence 39999999888888865 366777754221111 0001111211 1222 45568999999999988765
No 103
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=68.08 E-value=5.2 Score=32.46 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=28.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISS 119 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs 119 (223)
++++|||=.||+|-.....|.+.... .-.|+|.++.-
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 47899999999999988888776421 25678877653
No 104
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=67.80 E-value=33 Score=24.21 Aligned_cols=68 Identities=29% Similarity=0.471 Sum_probs=37.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCe-EEeh-HHHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGT-VVTD-VEAFRRLY 159 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~-~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~-v~~G-~dA~~~Il 159 (223)
++.| |-.+||.|....+.++...... -.++.+++.+.+ ....+|+..-=. + ++ ||+ .+.| ......+-
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~--~~~~ygv~~vPa---l-vI--ng~~~~~G~~p~~~el~ 72 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFE--EIEKYGVMSVPA---L-VI--NGKVVFVGRVPSKEELK 72 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHH--HHHHTT-SSSSE---E-EE--TTEEEEESS--HHHHHH
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHH--HHHHcCCCCCCE---E-EE--CCEEEEEecCCCHHHHH
Confidence 3566 6677999998888887664322 346778874433 234566632211 2 33 555 5788 55544443
No 105
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=67.40 E-value=37 Score=23.17 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=40.1
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-EeCCeEEehHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VSDGTVVTDVEAFRRL 158 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv-~~dG~v~~G~dA~~~I 158 (223)
+++|+.-.||.|.+..-.+..... +-.++.+.+....... +...+.+ ...+-++ ++||.....+.|+..-
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~-~i~~~~~~~~~~~~~~-~~~~~~p---~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGL-GDDVELVLVNPWSDDE-SLLAVNP---LGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCC-CCCcEEEEcCcccCCh-HHHHhCC---CCCCCEEEECCCCEEECHHHHHhh
Confidence 367888899999987777766322 2346666554321111 1111221 2233344 4688899999998764
No 106
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=67.38 E-value=7.3 Score=29.69 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=28.6
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS 119 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs 119 (223)
.-++.||-.+||.|..++..+.++... ..+.++.+..
T Consensus 27 ~vvv~F~a~~C~~C~~~~~~l~~l~~~-~~~~vv~v~~ 63 (127)
T cd03010 27 PYLLNVWASWCAPCREEHPVLMALARQ-GRVPIYGINY 63 (127)
T ss_pred EEEEEEEcCcCHHHHHHHHHHHHHHHh-cCcEEEEEEC
Confidence 457889999999999999999887542 3477776653
No 107
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=67.05 E-value=23 Score=29.61 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=41.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEe
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVT 150 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~ 150 (223)
.-++-||-.+|+-|......|..+......+.|+-+..+.......+++. ..=.+ ++-.+|+...
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~---~vPTl-llyk~G~~v~ 149 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTD---ALPAL-LVYKGGELIG 149 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCC---CCCEE-EEEECCEEEE
Confidence 34556999999999988888877755456789988877643112234432 12234 4446888654
No 108
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=66.62 E-value=9.5 Score=29.40 Aligned_cols=39 Identities=15% Similarity=0.393 Sum_probs=26.7
Q ss_pred ceEEEE-cCCChhhHHHHHHHHhhccc--CCCEEEEeCCChh
Q 027420 83 KIKMLY-DGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDE 121 (223)
Q Consensus 83 ki~VlY-DG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs~~ 121 (223)
-+++|| -.+||.|+.++..|.++-.. ...+.++-+..+.
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 345555 78999999999988776321 1457777766554
No 109
>PTZ00056 glutathione peroxidase; Provisional
Probab=65.72 E-value=22 Score=30.19 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=25.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDIS 118 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~--~~~I~fvdiq 118 (223)
-++.|.-.+||.|..++..|.++... ...+.++-+.
T Consensus 42 vlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 42 LMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 45668889999999988877766321 1347777664
No 110
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=65.28 E-value=48 Score=25.85 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=28.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISS 119 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~-~~~~I~fvdiqs 119 (223)
-++.||=.+||.|+...-.|.+... ....+-++++..
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~ 63 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSEN 63 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCC
Confidence 4677999999999998888877643 124588898874
No 111
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=65.05 E-value=44 Score=23.20 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=35.7
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 027420 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (223)
Q Consensus 91 ~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~ 161 (223)
.||+|.+..-+|+..+. .++++.+... .+. ....+-++..+|+.+.++.|+.+-+..
T Consensus 16 ~sp~~~~v~~~L~~~gi---~~~~~~~~~~--------~~~---p~g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 16 LSPFCLKVETFLRMAGI---PYENKFGGLA--------KRS---PKGKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred CCHHHHHHHHHHHHCCC---CcEEeecCcc--------cCC---CCCCCCEEEECCEEEcCHHHHHHHHHH
Confidence 47999998888877643 3555544321 111 123344555689999999998876643
No 112
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=63.59 E-value=16 Score=27.17 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=19.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHhh
Q 027420 83 KIKMLYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~ 105 (223)
-++.||-.+|+.|......+.+.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~ 43 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEA 43 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHH
Confidence 46789999999999988777644
No 113
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=63.33 E-value=15 Score=26.98 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=24.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEE--EeCCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKF--VDISS 119 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~f--vdiqs 119 (223)
-++.||..+|+.|......+.+.... .+.+.+ +++..
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 67889999999999887666555221 234444 55554
No 114
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=63.31 E-value=14 Score=28.46 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=29.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||+-..|.-|++..+||+..+ -.+.++|+..+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~---i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAG---IEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCC---CCeEEEecccCC
Confidence 47899999999999999998875 368889876544
No 115
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=62.98 E-value=16 Score=29.24 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=29.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||.-..|+.|+...+||..++ -.+.++|+..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~---i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQ---LSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC---CCeEEEECCCCC
Confidence 67899999999999999998874 368888886543
No 116
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=62.25 E-value=18 Score=30.82 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=32.7
Q ss_pred CceEEEEc---CCChhhHHHHHHHHhhcccCC--CEEEEeCCChhhhH-HHhCCC
Q 027420 82 WKIKMLYD---GDCPLCMREVNMLKERNKQYG--TIKFVDISSDEYSI-EENQGL 130 (223)
Q Consensus 82 ~ki~VlYD---G~CpLC~~~v~~L~~~d~~~~--~I~fvdiqs~~~~~-~~~~gl 130 (223)
-.+++|++ .+||-|......+.......+ .+.++++..++... ...+++
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V 75 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGV 75 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCC
Confidence 34677778 799999999998877743233 36688887544333 334555
No 117
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=61.90 E-value=11 Score=27.11 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=18.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHhh
Q 027420 83 KIKMLYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~ 105 (223)
-++.||-.+|+.|+.....+.+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~ 41 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQL 41 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHH
Confidence 67889999999999887766544
No 118
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=61.29 E-value=16 Score=28.29 Aligned_cols=35 Identities=9% Similarity=0.235 Sum_probs=29.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||+-..|.-|++..+||...+ -.+.++|+..+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~---i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKG---IEPEVVKYLKNP 35 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCC---CCeEEEeccCCC
Confidence 47999999999999999998874 468888876654
No 119
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=60.89 E-value=50 Score=22.47 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=40.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
++++|...|+.|.+..-.+...+. .++.+.+........+...+.+ ...+-++..+|..+..+.|+..-+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~~~~~~~~~~~~~~~~p---~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGV---EYEDVRITYEEWPELDLKPTLP---FGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCC---CcEEEEeCHHHhhhhhhccCCc---CCCCCEEEECCEEEEecHHHHHHh
Confidence 367888889999976666655532 3555544322111111122222 234445556788999999887644
No 120
>PRK10387 glutaredoxin 2; Provisional
Probab=60.77 E-value=57 Score=26.76 Aligned_cols=71 Identities=13% Similarity=0.326 Sum_probs=44.5
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-EeCCeEEehHHHHHHHHHHc
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VSDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv-~~dG~v~~G~dA~~~Il~~l 162 (223)
+++++...||.|.+..-.+..+. -.++.+++...+... ...+. ....+-++ .++|.++..+.||..-+...
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~g---i~y~~~~~~~~~~~~--~~~~~---p~~~VPvL~~~~g~~l~eS~aI~~yL~~~ 72 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKN---IPVELIVLANDDEAT--PIRMI---GQKQVPILQKDDGSYMPESLDIVHYIDEL 72 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcC---CCeEEEEcCCCchhh--HHHhc---CCcccceEEecCCeEecCHHHHHHHHHHh
Confidence 36788889999998766665553 245555553322111 11111 13455555 57899999999999977764
No 121
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=60.33 E-value=12 Score=29.88 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=26.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDIS 118 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~--~~~I~fvdiq 118 (223)
.-++.|+..+|| |..++..|+++... ...+.++-+.
T Consensus 24 ~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 24 VLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred EEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 345668999999 99999888776321 2357887775
No 122
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=60.07 E-value=12 Score=28.53 Aligned_cols=40 Identities=18% Similarity=0.409 Sum_probs=26.7
Q ss_pred ceEEEE-cCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhh
Q 027420 83 KIKMLY-DGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEY 122 (223)
Q Consensus 83 ki~VlY-DG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs~~~ 122 (223)
.+++|| ..+|+.|..++..|.+.... ...+.++-++.+..
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 345556 88999999998888765321 24577777666543
No 123
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=59.84 E-value=9.3 Score=27.59 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=25.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc---cCCCEEEE--eCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNK---QYGTIKFV--DISS 119 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~---~~~~I~fv--diqs 119 (223)
.-++.||-.+|+.|+.....+..... ..+.+.++ |...
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 61 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK 61 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC
Confidence 45689999999999998766644421 12446664 4444
No 124
>PHA02125 thioredoxin-like protein
Probab=59.78 E-value=24 Score=24.81 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
+++||=.+|+-|......|.+.. +.++++..+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~ 34 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDE 34 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCC
Confidence 68999999999999888886542 4566666543
No 125
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=59.52 E-value=30 Score=29.41 Aligned_cols=61 Identities=26% Similarity=0.386 Sum_probs=40.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEE
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVV 149 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~ 149 (223)
-++-||-.+|+-|...-..|.++......+.|+.+..+... ..+++. ..=.+ ++-.+|+..
T Consensus 105 VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~--~~~~i~---~lPTl-liyk~G~~v 165 (192)
T cd02988 105 VVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCI--PNYPDK---NLPTI-LVYRNGDIV 165 (192)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhH--hhCCCC---CCCEE-EEEECCEEE
Confidence 34569999999999998888888655567899988876532 233332 22234 344677744
No 126
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=59.46 E-value=25 Score=29.72 Aligned_cols=24 Identities=17% Similarity=0.483 Sum_probs=18.9
Q ss_pred CceEEEE-cCCChhhHHHHHHHHhh
Q 027420 82 WKIKMLY-DGDCPLCMREVNMLKER 105 (223)
Q Consensus 82 ~ki~VlY-DG~CpLC~~~v~~L~~~ 105 (223)
+-++.|| -.+||.|..++.-+.++
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l~~~ 57 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDVADH 57 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHHHHH
Confidence 4556667 78899999999877665
No 127
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=59.42 E-value=20 Score=29.94 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=17.4
Q ss_pred ceEEEE-cCCChhhHHHHHHHHhh
Q 027420 83 KIKMLY-DGDCPLCMREVNMLKER 105 (223)
Q Consensus 83 ki~VlY-DG~CpLC~~~v~~L~~~ 105 (223)
-++.|| =++||.|..++.-+.+.
T Consensus 34 vvl~F~p~~~cp~C~~el~~l~~~ 57 (187)
T TIGR03137 34 SVFFFYPADFTFVCPTELEDLADK 57 (187)
T ss_pred EEEEEECCCcCCcCHHHHHHHHHH
Confidence 345555 78999999999877654
No 128
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=59.12 E-value=15 Score=28.04 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=27.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISS 119 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs 119 (223)
.-++.||-.+||.|.+++..|.++-.. ...+.++.++.
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 456889999999999999888666321 23577777754
No 129
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=59.07 E-value=12 Score=29.12 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=19.3
Q ss_pred ceEEEEcC-CChhhHHHHHHHHhh
Q 027420 83 KIKMLYDG-DCPLCMREVNMLKER 105 (223)
Q Consensus 83 ki~VlYDG-~CpLC~~~v~~L~~~ 105 (223)
-++.||-+ +||.|..++-.+.++
T Consensus 31 ~vv~f~~~~~Cp~C~~~~p~l~~l 54 (146)
T PF08534_consen 31 VVVNFWASAWCPPCRKELPYLNEL 54 (146)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHH
T ss_pred EEEEEEccCCCCcchhhhhhHHhh
Confidence 46788999 999999999777666
No 130
>PRK15113 glutathione S-transferase; Provisional
Probab=58.70 E-value=64 Score=26.95 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=44.2
Q ss_pred CceEEEEcC--CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 82 WKIKMLYDG--DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 82 ~ki~VlYDG--~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
..+++|++. .|+.|.+..-.+...+.. =.+..+++...+....+...+. -++.+-++..+|.++..+.||..-+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~-~e~~~v~~~~~~~~~~~~~~~n---P~g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLP-FELKTVDLDAGEHLQPTYQGYS---LTRRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCC-CeEEEeCCCCccccCHHHHhcC---CCCCCCEEEECCEEEecHHHHHHHH
Confidence 446788864 699998877777766532 1233333322111111122222 2344556666889999999998866
Q ss_pred HHc
Q 027420 160 EEV 162 (223)
Q Consensus 160 ~~l 162 (223)
...
T Consensus 80 ~~~ 82 (214)
T PRK15113 80 EER 82 (214)
T ss_pred HHH
Confidence 654
No 131
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=58.50 E-value=58 Score=22.41 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=40.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~--~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~ 160 (223)
++++++..++.|++..-.+...+. .++.+.+..... .......+.+ ...+-++..+|..+..+.|+..-+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~---~~~~~~v~~~~~~~~~~~~~~~~p---~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKI---PFEECPIDLRKGEQLTPEFKKINP---FGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCC---CcEEEEecCCCCCcCCHHHHHhCc---CCCCCEEEECCEEEEcHHHHHHHHH
Confidence 368888899999877666766543 244443332111 0001111222 2334455557889999999887543
No 132
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=58.28 E-value=20 Score=27.99 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=29.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
+++||.-..|+-|+...+||..++ -.++++|+..+.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~g---i~~~~~d~~~~p 36 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAG---HEVEVRDLLTEP 36 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC---CCcEEeehhcCC
Confidence 368999999999999999998874 468888876643
No 133
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=56.93 E-value=14 Score=29.89 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCCh
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSD 120 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs~ 120 (223)
...-++.||..+||.|..++..+.++-.. ...+.++-++.+
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d 67 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN 67 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 34567889999999999877777665322 235888777653
No 134
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=56.87 E-value=16 Score=29.15 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=21.5
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhh
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~ 105 (223)
....+++|||=.||.|...-..+.+.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHH
Confidence 45568999999999999988877555
No 135
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=56.74 E-value=53 Score=27.57 Aligned_cols=69 Identities=12% Similarity=0.267 Sum_probs=41.5
Q ss_pred EEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-eCCeEEehHHHHHHHHHHc
Q 027420 86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 86 VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~Il~~l 162 (223)
+|+-..||+|++..-.|..+.- .++.+++...+... ...+.+ .+.+-++. .+|.++.++.||.+-+...
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl---~~e~~~~~~~~~~~--~~~~np---~g~vP~l~~~~g~~l~es~~I~~yL~~~ 71 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNI---PVEKHVLLNDDEET--PIRMIG---AKQVPILQKDDGRAMPESLDIVAYFDKL 71 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCC---CeEEEECCCCcchh--HHHhcC---CCCcceEEeeCCeEeccHHHHHHHHHHh
Confidence 5677779999987777766532 35555553322111 111111 23443443 6889999999998866654
No 136
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=56.49 E-value=13 Score=28.82 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=29.1
Q ss_pred CceEEEEcCC-ChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 82 WKIKMLYDGD-CPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 82 ~ki~VlYDG~-CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
.-++.||=++ ||.|..++.-+.++-.....+.++-++.+.
T Consensus 28 ~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~ 68 (143)
T cd03014 28 VKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL 68 (143)
T ss_pred eEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 4567778888 799999999887764334467777776643
No 137
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=54.94 E-value=11 Score=28.24 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcc
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNK 107 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~ 107 (223)
..-++.||-++|+.|...+..+.+.-.
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~ 47 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAA 47 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHh
Confidence 346788999999999999988887743
No 138
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=53.38 E-value=16 Score=28.33 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=24.8
Q ss_pred eEEEE-cCCChhhHHHHHHHHhhccc--CCCEEEEeCCChh
Q 027420 84 IKMLY-DGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlY-DG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs~~ 121 (223)
+++|| -.+||.|...+.-+++.-.. ...+.++-++.+.
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 44555 67899999998877665221 1357777666544
No 139
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=53.30 E-value=72 Score=21.98 Aligned_cols=69 Identities=9% Similarity=0.032 Sum_probs=40.3
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
++++|-..|+.|.+..-.+...+. .++.+.+..+.... +...+++ ...+-++..+|..+.++.|+..-+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i---~~e~~~v~~~~~~~-~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGI---SWEEERVTYEEWQE-SLKPKML---FGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCC---CCEEEEecHHHhhh-hhhccCC---CCCCCEEEECCEEEEcHHHHHHHH
Confidence 467777779999977666766543 35555443221111 1112222 233445556889999999988754
No 140
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=53.17 E-value=12 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=14.2
Q ss_pred CCCCCceEEEEcCCChhhH
Q 027420 78 SPENWKIKMLYDGDCPLCM 96 (223)
Q Consensus 78 ~~~~~ki~VlYDG~CpLC~ 96 (223)
.++..+++|||+|..-...
T Consensus 2 ~~~~~qLTIfY~G~V~Vfd 20 (36)
T PF06200_consen 2 SPETAQLTIFYGGQVCVFD 20 (36)
T ss_pred CCCCCcEEEEECCEEEEeC
Confidence 4567789999999765544
No 141
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=51.74 E-value=45 Score=25.72 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=36.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc---cCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEE
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNK---QYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVV 149 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~---~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~ 149 (223)
-++.||=.+|+-|......+.+... ....+..+++........+.+++.-... =.+.+++++|++.
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~v-Pt~~f~~~~Gk~~ 90 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYI-PRILFLDPSGDVH 90 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCcc-ceEEEECCCCCCc
Confidence 3466889999999999887766311 1235666776654321112222211001 1244677788864
No 142
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=51.03 E-value=22 Score=26.85 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=35.0
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 027420 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~ 149 (223)
...-++.||-.+|+-|......+.+.... ...+.+..+..+.... ....|+. .. =.+.++ .+|+..
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~--~~-Pt~~i~-~~g~~~ 92 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAH--SV-PAIVGI-INGQVT 92 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCc--cC-CEEEEE-ECCEEE
Confidence 34556789999999998777665444221 1245554444322112 2345552 11 124344 577644
No 143
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=50.87 E-value=15 Score=27.08 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=18.9
Q ss_pred CceEEEEcCCChhhHHHHHHHHhh
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~ 105 (223)
.-++.||-.+||.|+.....+.+.
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l 40 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEV 40 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHH
Confidence 446779999999999888766554
No 144
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=49.76 E-value=84 Score=21.67 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=39.0
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-HHHhCCCChhcccceEEEEE-eCCeEEehHHHHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-IEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRLYE 160 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~-~~~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~Il~ 160 (223)
+++|...||.|.+..-.+...+. .++++.+...... ..+...+++. ..+-++. +||..+..+.|+.+-+.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~---~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPL---GKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCC---CCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 57777889988877666665543 3555544432101 0111112222 3333444 46889999999887654
No 145
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=49.73 E-value=51 Score=29.32 Aligned_cols=67 Identities=25% Similarity=0.412 Sum_probs=41.3
Q ss_pred cCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 027420 89 DGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 89 DG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~l 162 (223)
-|.||+|++..-.|..++.. -.+..+++..... +...+.+. ..+-++..+|.++..+.||..-+...
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~-ye~~~vdl~~~~~---~fl~iNP~---GkVPvL~~d~~~L~ES~aI~~YL~e~ 136 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLP-YDMKLVDLTNKPE---WFLKISPE---GKVPVVKLDEKWVADSDVITQALEEK 136 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCC-CEEEEeCcCcCCH---HHHhhCCC---CCCCEEEECCEEEecHHHHHHHHHHH
Confidence 35599999988888777542 2344455543211 12223333 44556656778899999988866664
No 146
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=49.46 E-value=24 Score=26.22 Aligned_cols=38 Identities=3% Similarity=0.013 Sum_probs=26.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS 119 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs 119 (223)
.-++-||=.+|+-|...+..+.++......+.|+.+..
T Consensus 17 ~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~ 54 (103)
T cd02985 17 LVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNG 54 (103)
T ss_pred EEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEEC
Confidence 34566888999999999888877643335566665543
No 147
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=49.22 E-value=34 Score=26.99 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=28.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD 120 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~ 120 (223)
.+++|.--.|.-|+....||+.+.. ...++++...
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi---~~~~~~y~~~ 36 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGI---EYTFIDYLKT 36 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCC---CcEEEEeecC
Confidence 4789999999999999999998754 4667766543
No 148
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=47.42 E-value=19 Score=27.42 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=17.7
Q ss_pred CCceEEEEcCCChhhHHHHHHH
Q 027420 81 NWKIKMLYDGDCPLCMREVNML 102 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L 102 (223)
..-++.||-.+|+.|......+
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHh
Confidence 3556889999999999887644
No 149
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=47.01 E-value=23 Score=29.58 Aligned_cols=34 Identities=15% Similarity=0.428 Sum_probs=23.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEe
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVD 116 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvd 116 (223)
-++.||-.+||.|..++..+.+.... ...+-++.
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 35668999999999998888665431 12344554
No 150
>PRK10026 arsenate reductase; Provisional
Probab=45.87 E-value=40 Score=27.55 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=30.4
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
..++||.-..|.-|+...+||..++ -.+.++++-.+.
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~g---i~~~~~d~~~~p 38 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSG---TEPTIIHYLETP 38 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCC---CCcEEEeeeCCC
Confidence 3578999999999999999998875 468888875543
No 151
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=45.13 E-value=1.5e+02 Score=25.88 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh--H-HHhCCCChhcccceEEEEEeC
Q 027420 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS--I-EENQGLDYKTVMGSIHAIVSD 145 (223)
Q Consensus 79 ~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~--~-~~~~gld~e~~~~~lhvv~~d 145 (223)
....++.||=+.+|+-|...+..+..-+. .-.|-|++-+.++.. . ....+||++.+...-.-++-|
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a~~~-~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD 175 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLADNA-PLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHD 175 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhcCCC-ceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecC
Confidence 46677888888999999999998866443 234666763333322 2 346799999887554334433
No 152
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=45.10 E-value=45 Score=23.60 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=26.6
Q ss_pred EEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChh
Q 027420 85 KMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDE 121 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~-~~~~I~fvdiqs~~ 121 (223)
+.||=.+||.|......+.+... ....+.++++.+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~ 40 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMN 40 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 45677999999999776666532 12468899988544
No 153
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=44.42 E-value=98 Score=27.21 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=40.8
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 027420 90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 90 G~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~l 162 (223)
|.||+|++..-.+..+.. .++++.+.-....+ ....+.+. +.+-++..+|.++..+.||..-+...
T Consensus 17 ~~cp~~~rv~i~L~ekgi---~~e~~~vd~~~~~~-~fl~inP~---g~vPvL~~~g~~l~ES~aI~eYL~e~ 82 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGV---VFNVTTVDLKRKPE-DLQNLAPG---THPPFLTYNTEVKTDVNKIEEFLEET 82 (236)
T ss_pred CCCHhHHHHHHHHHHcCC---CcEEEEECCCCCCH-HHHHHCcC---CCCCEEEECCEEeecHHHHHHHHHHH
Confidence 789999999888877643 34444433211111 11122222 33445556889999999999988764
No 154
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=43.25 E-value=41 Score=27.34 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=24.0
Q ss_pred ceEEEE-cCCChhhHHHHHHHHhhccc--CCCEEEEeCCCh
Q 027420 83 KIKMLY-DGDCPLCMREVNMLKERNKQ--YGTIKFVDISSD 120 (223)
Q Consensus 83 ki~VlY-DG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs~ 120 (223)
-+++|| =++||.|..++..|.++... ...+.++-|+.+
T Consensus 32 vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 32 VVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 345555 67899999998888665221 134666666543
No 155
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=43.06 E-value=32 Score=29.41 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=20.5
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhh
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~ 105 (223)
+..+++|+|-.||+|.....-+.+.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~ 109 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKK 109 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHH
Confidence 6678999999999997777766654
No 156
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=42.41 E-value=1e+02 Score=20.57 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=36.2
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEE--EeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKF--VDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~f--vdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
++++...|+.|.+..-.+...+. .++. +++........+...+.+ ...+-++..+|..+..+.|+.+-+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNP---QGLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCC---CCCCCEEEECCEEEEcHHHHHHHh
Confidence 56667778888877666666543 3444 333211100001111222 233445556788999999987643
No 157
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=42.39 E-value=57 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=24.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDI 117 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~--~~~I~fvdi 117 (223)
-++.||=.+|+.|......+.+.... ...+.|..+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~v 55 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKV 55 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEE
Confidence 57899999999999988777655321 124655443
No 158
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=42.24 E-value=30 Score=26.41 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=25.3
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc----cCCCEEEEeCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNK----QYGTIKFVDIS 118 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~----~~~~I~fvdiq 118 (223)
.-++.||-.+|+.|......+.+... ..+.+.|..+.
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd 61 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEe
Confidence 45677999999999988877655432 12357776554
No 159
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=41.85 E-value=1.1e+02 Score=25.41 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=44.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~l 162 (223)
.+++|+...||.|.+..-.|...+. .++.+.+.-....+ +...+.+. +.+-++..+|.++..+.||..-+...
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~-~~~~~nP~---g~VPvL~~~g~~l~ES~AIl~YL~~~ 82 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQ-DLIDLNPY---QSVPTLVDRELTLYESRIIMEYLDER 82 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCH-HHHHhCCC---CCCCEEEECCEEeeCHHHHHHHHHHh
Confidence 4677777889999988777766543 34444443221111 12222222 34556666889999999998755543
No 160
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=41.00 E-value=1e+02 Score=25.31 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=30.5
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccC--CCEEEEeCCChhhhH-HHhCCCC
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQY--GTIKFVDISSDEYSI-EENQGLD 131 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~--~~I~fvdiqs~~~~~-~~~~gld 131 (223)
++.||=.+|+-|......+.+..... ..+.|..+.-++... .+.+++.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~ 101 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVS 101 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCce
Confidence 67899999999999988887664211 347665554433222 3455653
No 161
>PRK10853 putative reductase; Provisional
Probab=40.82 E-value=45 Score=26.13 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=29.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||.-..|.-|+...+||..++ -.++|+|+-.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~---i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQG---IDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcC---CCcEEeehccCC
Confidence 68999999999999999998874 468888876543
No 162
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=40.60 E-value=1.3e+02 Score=21.54 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=31.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhHHHhCCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSIEENQGL 130 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvdiqs~~~~~~~~~gl 130 (223)
++++|==-.|+||......|...... .=.+..+||.++..- .+.+|.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l-~~~Y~~ 48 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPEL-FEKYGY 48 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHH-HHHSCT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHH-HHHhcC
Confidence 35667778999999999999875321 135888999976532 345554
No 163
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=40.58 E-value=36 Score=28.62 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=27.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISS 119 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~-~~~~I~fvdiqs 119 (223)
++.++||=-||+|--..+.|.+... ..-.|.|.+++-
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 5789999999999988888876532 124688888643
No 164
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=40.17 E-value=1.3e+02 Score=21.14 Aligned_cols=67 Identities=18% Similarity=0.130 Sum_probs=37.7
Q ss_pred cCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHH-HhCCCChhcccceEEEEEeC-CeEEehHHHHHHHHHH
Q 027420 89 DGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIE-ENQGLDYKTVMGSIHAIVSD-GTVVTDVEAFRRLYEE 161 (223)
Q Consensus 89 DG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~-~~~gld~e~~~~~lhvv~~d-G~v~~G~dA~~~Il~~ 161 (223)
.+.||+|.+..-.|...+. .++++.+........ ....++ -...+-++..+ |.++.++.|+.+-+..
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i---~~~~~~~~~~~~~~~~~~~~~~---p~~~vP~L~~~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGL---EYKTVPVEFPDIPPILGELTSG---GFYTVPVIVDGSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCC---CCeEEEecCCCcccccccccCC---CCceeCeEEECCCCEEeCHHHHHHHHHH
Confidence 4679999988888877643 244443332211110 011122 22344444445 8899999999886654
No 165
>PLN02412 probable glutathione peroxidase
Probab=39.81 E-value=31 Score=28.16 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=24.5
Q ss_pred eEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCC
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISS 119 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~--~~~I~fvdiqs 119 (223)
++.|+..+||.|..++..|.++... ...+.++-+..
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 3557799999999988777665221 13477777754
No 166
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=39.72 E-value=34 Score=26.11 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=19.3
Q ss_pred CceEEEEcCCChhhHHHHHHHHhh
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~ 105 (223)
.-++.||-.+|+-|..++..+.+.
T Consensus 20 ~vll~Fwa~wC~~C~~~~p~l~~~ 43 (131)
T cd03009 20 TVGLYFSASWCPPCRAFTPKLVEF 43 (131)
T ss_pred EEEEEEECCCChHHHHHhHHHHHH
Confidence 356778899999999998887644
No 167
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=39.41 E-value=69 Score=25.20 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=29.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEE--EeCCChhhhHHHhCCCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKF--VDISSDEYSIEENQGLD 131 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~f--vdiqs~~~~~~~~~gld 131 (223)
-++.||-.+||-|+...-.+.++... .+.+.| +|+...... ...+|+.
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~l-a~~~~V~ 67 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDF-NKMYELY 67 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHH-HHHcCCC
Confidence 34559999999999888888666432 234555 555444322 2355653
No 168
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=39.32 E-value=72 Score=23.26 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=16.1
Q ss_pred CceEEEEcCCChhhHHHHHHH
Q 027420 82 WKIKMLYDGDCPLCMREVNML 102 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L 102 (223)
.-++.||=.+|+.|......+
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~ 33 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVV 33 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHh
Confidence 345778889999999887543
No 169
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=39.19 E-value=30 Score=27.96 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=27.5
Q ss_pred eEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCCh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSD 120 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~-~~~I~fvdiqs~ 120 (223)
+.++||-.||+|--....|.+.... .-.|.|.++.-.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l~ 38 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILLG 38 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeHH
Confidence 4689999999999998888776421 246788877543
No 170
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=38.34 E-value=62 Score=25.78 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=29.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
++||.-..|.-|+...+||..++ -.++|+|+-.+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~g---i~~~~~d~~~~p 37 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASG---HDVEVQDILKEP 37 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC---CCcEEEeccCCC
Confidence 67999999999999999998875 468888876543
No 171
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=37.36 E-value=39 Score=27.64 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=23.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccC-----CCEEEEeC
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQY-----GTIKFVDI 117 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~-----~~I~fvdi 117 (223)
+.+|||=-||+|--....|.+..... -.|.|.++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 46999999999998877776543222 34666665
No 172
>PHA02540 61 DNA primase; Provisional
Probab=36.67 E-value=64 Score=30.23 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=47.0
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC---ChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHHHHH
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS---SDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFR 156 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiq---s~~~~~-~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~ 156 (223)
..++++.||+|-+- ...++.+..+....-++...+.. +.+... ....|.+.++.++- + +.+.+.|.+|-+
T Consensus 256 ~~~vvl~~D~Da~~-~at~r~~~~l~~~g~~v~v~~~~~~~~kDpde~i~~~G~~~~~~~~~---i--~~n~~~gl~ak~ 329 (337)
T PHA02540 256 KDTRVWVLDNEPRH-PDTIKRISKLIDAGEKVVIWDKCPWPSKDINDMIMKGGATPEDIMEY---I--KSNTYQGLMAKL 329 (337)
T ss_pred cceEEEEECCchhH-HHHHHHHHHHHHCCCeEEEecCCCCCCcCHHHHHHhcCCCHHHHHHH---H--HHccccHHHHHH
Confidence 45789999999664 56666666663323456555543 233333 45678888887653 2 345789999887
Q ss_pred HHHH
Q 027420 157 RLYE 160 (223)
Q Consensus 157 ~Il~ 160 (223)
++-+
T Consensus 330 ~~~~ 333 (337)
T PHA02540 330 RLSK 333 (337)
T ss_pred Hhhh
Confidence 7653
No 173
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=36.34 E-value=72 Score=26.92 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=15.9
Q ss_pred CCceEEEEcCCChhhHHHH
Q 027420 81 NWKIKMLYDGDCPLCMREV 99 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v 99 (223)
...++.|||=.||.|...-
T Consensus 38 ~~~VvEffdy~CphC~~~~ 56 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFE 56 (207)
T ss_pred CCeEEEEeCCCCccHHHhc
Confidence 3458999999999999854
No 174
>PLN02378 glutathione S-transferase DHAR1
Probab=36.22 E-value=1.5e+02 Score=24.80 Aligned_cols=66 Identities=24% Similarity=0.397 Sum_probs=41.4
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 027420 90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 90 G~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~l 162 (223)
|.||+|++..-.|...... -.+..+|+..... +...+.+. +.+-++..+|.++..+.||..-+...
T Consensus 18 ~~~p~~~rv~~~L~e~gl~-~e~~~v~~~~~~~---~~l~inP~---G~VPvL~~~~~~l~ES~aI~~YL~~~ 83 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLT-YKIHLINLSDKPQ---WFLDISPQ---GKVPVLKIDDKWVTDSDVIVGILEEK 83 (213)
T ss_pred CCCcchHHHHHHHHHcCCC-CeEEEeCcccCCH---HHHHhCCC---CCCCEEEECCEEecCHHHHHHHHHHh
Confidence 5599999887777666542 3455666644221 12223332 44556666788999999998866653
No 175
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=35.79 E-value=1.6e+02 Score=20.74 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=39.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh-hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY-SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~-~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~ 161 (223)
++++|....+-|.+..-.+...+ -.++++.+...+. .+....+ ...+..+-++..||..++.+.|+.+-+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~g---i~~e~~~v~~~~~~~~~~~~~---~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAG---VEFEEKFIESAEDLEKLKKDG---SLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcC---CCcEEEEeccHHHHHhhcccc---CCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 56777776666664444444433 3455555433211 1111100 11244555665688999999999886654
No 176
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=35.76 E-value=1.4e+02 Score=21.49 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=36.1
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il 159 (223)
+||==..||+|.+.-+.|.+++. .++.+++........+.. +........+-+|.-+|+...|.+-+.++.
T Consensus 4 ~iyt~~~CPyC~~ak~~L~~~g~---~~~~i~~~~~~~~~~~~~-~~~~~g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 4 TIYTKPGCPYCKRAKRLLDRKGV---DYEEIDVDDDEPEEAREM-VKRGKGQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred EEEECCCCchHHHHHHHHHHcCC---CcEEEEecCCcHHHHHHH-HHHhCCCCCcCEEEECCEEEeCcccHHHHH
Confidence 44444569999999999987754 355555555442110000 000001123334445776666654444443
No 177
>PLN02473 glutathione S-transferase
Probab=34.89 E-value=1.6e+02 Score=24.19 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=42.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~~l 162 (223)
++++|...++.|.+..-.|..++.. -.+..+++...+....+...+. -++.+-++..+|.++..+.||..-+...
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~-ye~~~v~~~~~~~~~~~~~~~n---P~g~vP~L~~~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIE-FEVIHVDLDKLEQKKPEHLLRQ---PFGQVPAIEDGDLKLFESRAIARYYATK 77 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCC-ceEEEecCcccccCCHHHHhhC---CCCCCCeEEECCEEEEehHHHHHHHHHH
Confidence 4677777899888777667666432 1233344432111111111122 2345556666889999999999866543
No 178
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=34.64 E-value=49 Score=26.94 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=29.1
Q ss_pred CceEEEEcCC-ChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 82 WKIKMLYDGD-CPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 82 ~ki~VlYDG~-CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
.-++.||=++ ||.|..++..+.+.-.....+.++-++.+.
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~ 86 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADL 86 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 4567788888 999999999887764333457777666543
No 179
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.28 E-value=27 Score=30.38 Aligned_cols=17 Identities=35% Similarity=1.030 Sum_probs=12.0
Q ss_pred EEEEcCCChhhHHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNML 102 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L 102 (223)
.-+|| +||||.+..-..
T Consensus 3 LYIYd-HCPfcvrarmi~ 19 (215)
T COG2999 3 LYIYD-HCPFCVRARMIF 19 (215)
T ss_pred eeEec-cChHHHHHHHHh
Confidence 34676 799999875444
No 180
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=32.82 E-value=1.2e+02 Score=26.60 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=30.3
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGL 130 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~-~~~~I~fvdiqs~~~~~-~~~~gl 130 (223)
.-++.||=.+|+.|......+.+... ..+.+.+..+....... .+.+++
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I 104 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAI 104 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC
Confidence 34688999999999998887655421 12456665554333222 334555
No 181
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=32.07 E-value=2.4e+02 Score=23.06 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=36.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCC---CEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCe
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYG---TIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGT 147 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~---~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~ 147 (223)
-++-||-.+|+-|....-.|.+...... .|--+|+....... ..+++. .....+++. .+|+
T Consensus 26 VVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla-~~y~I~--~~~t~~~ff-k~g~ 89 (142)
T PLN00410 26 VVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFN-TMYELY--DPCTVMFFF-RNKH 89 (142)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHH-HHcCcc--CCCcEEEEE-ECCe
Confidence 3466999999999999888877753222 23446776654322 356664 233444333 4554
No 182
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.72 E-value=1.7e+02 Score=24.21 Aligned_cols=74 Identities=23% Similarity=0.259 Sum_probs=46.1
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEE-EEeCCeEEehHHHHHHHHHHc
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHA-IVSDGTVVTDVEAFRRLYEEV 162 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhv-v~~dG~v~~G~dA~~~Il~~l 162 (223)
++++|...+|+|.+..-.+..++. .-.+..+++.. +....+...+.+. +.+-+ +++||.++..+.||..-+...
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~-~ye~~~v~~~~-~~~~~~~~~~nP~---gkVPvL~~~~~~~l~ES~AI~~YL~~~ 75 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGL-PYEIVLVDLDA-EQKPPDFLALNPL---GKVPALVDDDGEVLTESGAILEYLAER 75 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCC-CceEEEeCccc-ccCCHHHHhcCCC---CCCCEEeeCCCCeeecHHHHHHHHHhh
Confidence 367888888999999888887753 23556666654 1111112223322 33444 445555899999999977775
No 183
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=31.04 E-value=1e+02 Score=25.91 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=14.6
Q ss_pred EEcCCChhhHHHHHHHHhh
Q 027420 87 LYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 87 lYDG~CpLC~~~v~~L~~~ 105 (223)
+.-.+||.|..++.-+.++
T Consensus 33 ~pa~~cp~C~~el~~l~~~ 51 (203)
T cd03016 33 HPADFTPVCTTELGAFAKL 51 (203)
T ss_pred ecCCCCCcCHHHHHHHHHH
Confidence 3355699999998877665
No 184
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=30.98 E-value=12 Score=25.17 Aligned_cols=11 Identities=55% Similarity=1.241 Sum_probs=5.7
Q ss_pred cCCChhhHHHH
Q 027420 89 DGDCPLCMREV 99 (223)
Q Consensus 89 DG~CpLC~~~v 99 (223)
+|.||+|.+..
T Consensus 20 ~~~CPlC~r~l 30 (54)
T PF04423_consen 20 KGCCPLCGRPL 30 (54)
T ss_dssp SEE-TTT--EE
T ss_pred CCcCCCCCCCC
Confidence 46899998643
No 185
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=30.91 E-value=96 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=23.3
Q ss_pred EEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 027420 87 LYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 87 lYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~ 121 (223)
|+-..|.-|+...+||...+ -.+.|+|+....
T Consensus 1 Y~~~~C~t~rka~~~L~~~g---i~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENG---IEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT-----EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHcC---CCeEeehhhhCC
Confidence 45678999999999999875 369999998743
No 186
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=29.89 E-value=66 Score=22.04 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEE
Q 027420 78 SPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFV 115 (223)
Q Consensus 78 ~~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fv 115 (223)
.....+.+|+|++.+......+..|+... ...+.+.
T Consensus 46 ~~~~~~~vv~~c~~~~~a~~~~~~l~~~G--~~~v~~l 81 (89)
T cd00158 46 ELDKDKPIVVYCRSGNRSARAAKLLRKAG--GTNVYNL 81 (89)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHhC--cccEEEe
Confidence 34566779999999888887777777653 3445444
No 187
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=29.11 E-value=66 Score=23.95 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=19.8
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhh
Q 027420 81 NWKIKMLYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 81 ~~ki~VlYDG~CpLC~~~v~~L~~~ 105 (223)
..-++.||=.+||.|+.....+.+.
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~l 46 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEEL 46 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHH
Confidence 3456889999999999888776554
No 188
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=28.95 E-value=73 Score=28.64 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=29.8
Q ss_pred CCCCCceEEEEcCC--ChhhHHHHHHH-HhhcccCCCEEEEeCCChh
Q 027420 78 SPENWKIKMLYDGD--CPLCMREVNML-KERNKQYGTIKFVDISSDE 121 (223)
Q Consensus 78 ~~~~~ki~VlYDG~--CpLC~~~v~~L-~~~d~~~~~I~fvdiqs~~ 121 (223)
-.++.|+.|+|.|+ ||+|..+.=-| ..+.+ .|.+.+..-.+..
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsr-fGn~~l~~~~S~~ 99 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSR-FGNFSLEYHYSDP 99 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHh-cCCeeeEEeecCc
Confidence 45778999999995 99998764322 33344 7788777666553
No 189
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.74 E-value=44 Score=23.62 Aligned_cols=16 Identities=25% Similarity=0.754 Sum_probs=12.6
Q ss_pred cCCChhhHHHHHHHHh
Q 027420 89 DGDCPLCMREVNMLKE 104 (223)
Q Consensus 89 DG~CpLC~~~v~~L~~ 104 (223)
-|.||+|++-++=+.+
T Consensus 43 ~g~CPiCRapi~dvIk 58 (62)
T KOG4172|consen 43 HGCCPICRAPIKDVIK 58 (62)
T ss_pred CCcCcchhhHHHHHHH
Confidence 3789999998876644
No 190
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=27.10 E-value=53 Score=25.14 Aligned_cols=19 Identities=26% Similarity=0.714 Sum_probs=16.2
Q ss_pred ceEEEEcCCChhhHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNM 101 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~ 101 (223)
++.|||-.-||-|++++..
T Consensus 2 ~v~vyyESlCPd~~~fi~~ 20 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRFITN 20 (108)
T ss_pred EEEEEEEecCHhHHHHHHH
Confidence 4789999999999987653
No 191
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=25.71 E-value=2.3e+02 Score=19.53 Aligned_cols=73 Identities=26% Similarity=0.190 Sum_probs=36.8
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-EeC--CeEEehHHHHHHHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VSD--GTVVTDVEAFRRLYE 160 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv-~~d--G~v~~G~dA~~~Il~ 160 (223)
+++++ ..+|.|.+..-.+...+.. -.+..+++........+...+.+. ..+-++ +.+ |..+..+.|+..-+.
T Consensus 2 ~~Ly~-~~~~~~~~v~~~l~~~gl~-~~~~~~~~~~~~~~~~~~~~~~p~---~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYT-HGTPNGFKVSIMLEELGLP-YEIHPVDISKGEQKKPEFLKINPN---GRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEe-CCCCChHHHHHHHHHcCCC-cEEEEecCcCCcccCHHHHHhCcC---CCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 34444 4459998887777776542 233344432211110011112221 233333 333 889999999887554
Q ss_pred H
Q 027420 161 E 161 (223)
Q Consensus 161 ~ 161 (223)
.
T Consensus 77 ~ 77 (81)
T cd03048 77 E 77 (81)
T ss_pred H
Confidence 3
No 192
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=25.34 E-value=82 Score=23.94 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=24.8
Q ss_pred ceEEEE-cCCChhhHHHHHHHHhhcc--cCCCEEEEeCCChhh
Q 027420 83 KIKMLY-DGDCPLCMREVNMLKERNK--QYGTIKFVDISSDEY 122 (223)
Q Consensus 83 ki~VlY-DG~CpLC~~~v~~L~~~d~--~~~~I~fvdiqs~~~ 122 (223)
-++.|| =.+||.|...+..+.+... ....+.++.++.+..
T Consensus 26 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~ 68 (140)
T cd03017 26 VVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV 68 (140)
T ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 345555 4689999988877655521 123567777766443
No 193
>PTZ00102 disulphide isomerase; Provisional
Probab=24.60 E-value=1.5e+02 Score=27.77 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=39.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhc----ccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe-EEeh---H
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERN----KQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT-VVTD---V 152 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d----~~~~~I~fvdiqs~~~~~-~~~~gld~e~~~~~lhvv~~dG~-v~~G---~ 152 (223)
.-++.||..+|+.|......+.+.. .....+.|..+....... ...+++.- . =.+.++..++. .|.| .
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~~g~~~~y~g~~~~ 127 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG--Y-PTIKFFNKGNPVNYSGGRTA 127 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc--c-cEEEEEECCceEEecCCCCH
Confidence 4678899999999998776544321 112457665543322222 33455521 1 12435543332 2444 4
Q ss_pred HHHHHHHHH
Q 027420 153 EAFRRLYEE 161 (223)
Q Consensus 153 dA~~~Il~~ 161 (223)
+.+...+..
T Consensus 128 ~~l~~~l~~ 136 (477)
T PTZ00102 128 DGIVSWIKK 136 (477)
T ss_pred HHHHHHHHH
Confidence 455554444
No 194
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=24.55 E-value=1.3e+02 Score=24.49 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=17.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhh
Q 027420 84 IKMLYDGDCPLCMREVNMLKER 105 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~ 105 (223)
++-|.=.+||-|+.++-.|.++
T Consensus 29 lL~FwAsWCppCr~e~P~L~~l 50 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDF 50 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHH
Confidence 4557789999999999888763
No 195
>PRK11752 putative S-transferase; Provisional
Probab=24.24 E-value=4.8e+02 Score=22.76 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=37.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhh---cccCCCEEE--EeCCChhhhHHHhCCCChhcccceEE-EEEeC---CeEEehHHH
Q 027420 84 IKMLYDGDCPLCMREVNMLKER---NKQYGTIKF--VDISSDEYSIEENQGLDYKTVMGSIH-AIVSD---GTVVTDVEA 154 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~~L~~~---d~~~~~I~f--vdiqs~~~~~~~~~gld~e~~~~~lh-vv~~d---G~v~~G~dA 154 (223)
++-||...+|.|++..-.|..+ ....-.+++ +++...+....+...+.+. ..+- +++.+ |.++..+.|
T Consensus 44 ~~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~---GkVP~Lv~~dg~~~~~L~ES~A 120 (264)
T PRK11752 44 PLQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN---SKIPALLDRSGNPPIRVFESGA 120 (264)
T ss_pred CeEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC---CCCCEEEeCCCCCCeEEEcHHH
Confidence 3445557799999877667663 110112443 4433221111112222222 2232 33444 368999999
Q ss_pred HHHHHHHc
Q 027420 155 FRRLYEEV 162 (223)
Q Consensus 155 ~~~Il~~l 162 (223)
|..-+...
T Consensus 121 Il~YL~~~ 128 (264)
T PRK11752 121 ILLYLAEK 128 (264)
T ss_pred HHHHHHHh
Confidence 98866543
No 196
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=24.03 E-value=2.8e+02 Score=19.97 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=36.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~ 160 (223)
..+++.|+.|.+ +..-+|+..+- .++.+++.... . ..++ +.+-++..||+++.++.|++..+.
T Consensus 10 ~~~~~~~~~~~~--kv~~~L~elgl---pye~~~~~~~~-----~--~~P~---GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 10 EQILLPDNASCL--AVQTFLKMCNL---PFNVRCRANAE-----F--MSPS---GKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CeeecCCCCCHH--HHHHHHHHcCC---CcEEEecCCcc-----c--cCCC---CcccEEEECCEEEeCHHHHHHHHh
Confidence 345666777644 55555655532 34555432211 0 1221 455455569999999999998664
No 197
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=23.99 E-value=2.3e+02 Score=22.24 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCChhhHHHHHHHHhhcccCC-CEEE--EeCCChh------hhHHHhCCCChhcccceEEEEEeCCeEEehHHH
Q 027420 90 GDCPLCMREVNMLKERNKQYG-TIKF--VDISSDE------YSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEA 154 (223)
Q Consensus 90 G~CpLC~~~v~~L~~~d~~~~-~I~f--vdiqs~~------~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA 154 (223)
.+||-|+...-.+.+...... .+.| +++.... ......+++. ...-.++++ .+|+.+.|-+.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~--~~iPT~~~~-~~~~~l~~~~c 108 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT--TGVPTLLRW-KTPQRLVEDEC 108 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc--cCCCEEEEE-cCCceecchhh
Confidence 599999988777766643222 4555 4543311 1111234443 223345455 45666666553
No 198
>PTZ00256 glutathione peroxidase; Provisional
Probab=23.95 E-value=85 Score=25.91 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=22.7
Q ss_pred EEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 027420 86 MLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS 118 (223)
Q Consensus 86 VlYDG~CpLC~~~v~~L~~~d~--~~~~I~fvdiq 118 (223)
++.-.+||.|..++..|.++-. ....+.++-++
T Consensus 47 ~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 47 VNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred EEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 4588999999999887775521 11247777665
No 199
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.03 E-value=64 Score=26.10 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhc
Q 027420 83 KIKMLYDGDCPLCMREVNMLKERN 106 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~d 106 (223)
++.+|||=-||.|-..-..+.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~ 25 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLK 25 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHH
Confidence 578999999999998888887664
No 200
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=22.70 E-value=2.5e+02 Score=18.94 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=39.3
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 027420 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (223)
Q Consensus 85 ~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~Il~ 160 (223)
++++-..||.|.+..-.+...+- .++.+++....... +...+.+. .+.+-++..+|.++..+.|+.+-+.
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl---~~~~~~~~~~~~~~-~~~~~~p~--~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGV---PYEYVEEDLGNKSE-LLLASNPV--HKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCC---CCEEEEeCcccCCH-HHHHhCCC--CCCCCEEEECCEEeehHHHHHHHHH
Confidence 45666789999988777776643 24444333221111 11111111 1334344457889999999987554
No 201
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=1.3e+02 Score=27.89 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCC
Q 027420 79 PENWKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGL 130 (223)
Q Consensus 79 ~~~~ki~VlYDG~CpLC~~~v~~L~~~d~-~~~~I~fvdiqs~~~~~-~~~~gl 130 (223)
....-+++||+-+|+.|...+..+.+... -.+.+.+..+....-.. ...+++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCC
Confidence 35566799999999999999998875522 12334444443333222 345555
No 202
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=22.11 E-value=83 Score=27.73 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=18.7
Q ss_pred CCCceEEEEcCCChhhHHHHHH
Q 027420 80 ENWKIKMLYDGDCPLCMREVNM 101 (223)
Q Consensus 80 ~~~ki~VlYDG~CpLC~~~v~~ 101 (223)
+.-.++|||-+-||.|+.++..
T Consensus 39 ~~v~ItlyyEaLCPdc~~Fi~~ 60 (220)
T KOG3160|consen 39 PKVNITLYYEALCPDCSKFIRN 60 (220)
T ss_pred CeeEEEEEEEecCccHHHHHHH
Confidence 3567899999999999988763
No 203
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=22.08 E-value=3.5e+02 Score=21.25 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=13.2
Q ss_pred eEEEEcCCChhhHHHHH
Q 027420 84 IKMLYDGDCPLCMREVN 100 (223)
Q Consensus 84 i~VlYDG~CpLC~~~v~ 100 (223)
++.||-.+|+-|...-.
T Consensus 19 ll~f~a~WC~~Ck~me~ 35 (124)
T cd02955 19 FLSIGYSTCHWCHVMEH 35 (124)
T ss_pred EEEEccCCCHhHHHHHH
Confidence 35588899999997654
No 204
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=21.53 E-value=2.4e+02 Score=19.22 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEE
Q 027420 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFV 115 (223)
Q Consensus 79 ~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fv 115 (223)
....+.+|+||+...-+......|++.. ...+.+.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G--~~~v~~l 87 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELG--FKNVYLL 87 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcC--CCceEEe
Confidence 3556779999988777777777776653 3455554
No 205
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=21.45 E-value=96 Score=27.39 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=24.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 027420 82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS 118 (223)
Q Consensus 82 ~ki~VlYDG~CpLC~~~v~~L~~~d~--~~~~I~fvdiq 118 (223)
.-+++|+-.+||.|..++..|.++-. ....+.++-+.
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 34578999999999998876665521 11236665554
No 206
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.96 E-value=3.2e+02 Score=21.09 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=44.2
Q ss_pred CCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh-hHHHhCCCChhcccceEEEEEeCCeEEehHHHHH
Q 027420 78 SPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY-SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFR 156 (223)
Q Consensus 78 ~~~~~ki~VlYDG~CpLC~~~v~~L~~~d~~~~~I~fvdiqs~~~-~~~~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~ 156 (223)
.....+++||==..||+|.+.-..+.... .....+.+..... .+++.. +-.-.....+-.+-=+|+.+.|.+-+.
T Consensus 10 ~i~~~~VVifSKs~C~~c~~~k~ll~~~~---v~~~vvELD~~~~g~eiq~~-l~~~tg~~tvP~vFI~Gk~iGG~~dl~ 85 (104)
T KOG1752|consen 10 MISENPVVIFSKSSCPYCHRAKELLSDLG---VNPKVVELDEDEDGSEIQKA-LKKLTGQRTVPNVFIGGKFIGGASDLM 85 (104)
T ss_pred HhhcCCEEEEECCcCchHHHHHHHHHhCC---CCCEEEEccCCCCcHHHHHH-HHHhcCCCCCCEEEECCEEEcCHHHHH
Confidence 34667778888899999999666666643 3444554444321 121111 111111123334445899888887776
Q ss_pred HHHH
Q 027420 157 RLYE 160 (223)
Q Consensus 157 ~Il~ 160 (223)
.+-.
T Consensus 86 ~lh~ 89 (104)
T KOG1752|consen 86 ALHK 89 (104)
T ss_pred HHHH
Confidence 6543
No 207
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=20.63 E-value=1.9e+02 Score=26.50 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=29.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhh----cccCCCEEEEeCCChhhhH-HHhCCC
Q 027420 83 KIKMLYDGDCPLCMREVNMLKER----NKQYGTIKFVDISSDEYSI-EENQGL 130 (223)
Q Consensus 83 ki~VlYDG~CpLC~~~v~~L~~~----d~~~~~I~fvdiqs~~~~~-~~~~gl 130 (223)
-++.||-.+|+.|......+.+. ......+.|..+....... ...+|+
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i 73 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGV 73 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCC
Confidence 46889999999999887655432 1112347776655544332 345555
Done!