Query 027421
Match_columns 223
No_of_seqs 141 out of 324
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 09:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 3.9E-40 8.5E-45 288.0 4.4 114 102-223 2-115 (218)
2 KOG3178 Hydroxyindole-O-methyl 99.7 8.3E-18 1.8E-22 155.7 6.0 114 100-223 114-233 (342)
3 PF12847 Methyltransf_18: Meth 98.4 3.8E-07 8.2E-12 68.0 4.5 42 159-200 3-45 (112)
4 PRK11207 tellurite resistance 98.1 4.5E-06 9.6E-11 70.4 5.5 43 159-202 32-74 (197)
5 PLN02336 phosphoethanolamine N 98.1 5.4E-06 1.2E-10 77.9 6.5 75 115-199 4-78 (475)
6 PTZ00098 phosphoethanolamine N 98.1 1.5E-05 3.2E-10 70.4 7.9 68 126-201 29-96 (263)
7 TIGR02469 CbiT precorrin-6Y C5 98.0 1.2E-05 2.7E-10 60.1 6.0 45 158-202 20-65 (124)
8 PF08241 Methyltransf_11: Meth 98.0 1.1E-05 2.4E-10 57.2 5.4 40 162-202 1-41 (95)
9 PLN02396 hexaprenyldihydroxybe 98.0 2.3E-05 4.9E-10 72.3 8.6 43 157-200 131-173 (322)
10 PRK11036 putative S-adenosyl-L 98.0 9.1E-06 2E-10 70.6 5.0 43 159-202 46-88 (255)
11 PRK01683 trans-aconitate 2-met 98.0 1E-05 2.3E-10 69.6 5.2 56 137-200 19-75 (258)
12 TIGR00477 tehB tellurite resis 98.0 1.2E-05 2.7E-10 67.6 5.5 42 159-201 32-73 (195)
13 PF13649 Methyltransf_25: Meth 97.9 7.6E-06 1.7E-10 61.1 3.4 41 161-202 1-46 (101)
14 PF08242 Methyltransf_12: Meth 97.9 7.6E-07 1.6E-11 65.8 -2.3 41 162-202 1-42 (99)
15 smart00650 rADc Ribosomal RNA 97.9 1.7E-05 3.6E-10 65.0 5.1 44 158-202 14-57 (169)
16 PRK07402 precorrin-6B methylas 97.9 2.5E-05 5.4E-10 65.2 5.7 46 157-202 40-86 (196)
17 PF13847 Methyltransf_31: Meth 97.9 2.8E-05 6.1E-10 62.0 5.8 46 157-202 3-50 (152)
18 PRK15001 SAM-dependent 23S rib 97.9 2.6E-05 5.6E-10 73.6 6.1 63 131-202 211-274 (378)
19 PRK10258 biotin biosynthesis p 97.8 2.5E-05 5.5E-10 67.1 5.2 42 158-200 43-84 (251)
20 PRK00107 gidB 16S rRNA methylt 97.8 4.2E-05 9E-10 65.2 6.4 85 106-202 6-91 (187)
21 TIGR00080 pimt protein-L-isoas 97.8 3E-05 6.4E-10 65.9 5.5 45 157-202 77-124 (215)
22 TIGR02752 MenG_heptapren 2-hep 97.8 2.6E-05 5.7E-10 65.8 5.0 56 139-202 35-92 (231)
23 PF05219 DREV: DREV methyltran 97.8 3.7E-05 7.9E-10 70.0 5.9 78 117-199 58-135 (265)
24 PRK00811 spermidine synthase; 97.8 4.1E-05 8.8E-10 68.7 6.2 75 123-202 47-122 (283)
25 TIGR02021 BchM-ChlM magnesium 97.8 3.9E-05 8.6E-10 64.8 5.6 45 157-202 55-99 (219)
26 COG2226 UbiE Methylase involve 97.8 4.1E-05 8.8E-10 68.4 5.9 45 157-202 51-97 (238)
27 PF05175 MTS: Methyltransferas 97.8 5.1E-05 1.1E-09 62.5 6.0 59 136-202 18-77 (170)
28 PRK00274 ksgA 16S ribosomal RN 97.8 4.1E-05 8.9E-10 68.0 5.7 43 158-201 43-85 (272)
29 PRK05785 hypothetical protein; 97.8 6.1E-05 1.3E-09 65.3 6.2 40 159-199 53-93 (226)
30 TIGR03587 Pse_Me-ase pseudamin 97.7 6.5E-05 1.4E-09 64.4 6.3 43 158-200 44-87 (204)
31 PRK08287 cobalt-precorrin-6Y C 97.7 5.9E-05 1.3E-09 62.4 5.8 45 158-202 32-77 (187)
32 TIGR01444 fkbM_fam methyltrans 97.7 4.5E-05 9.8E-10 59.5 4.7 43 160-202 1-44 (143)
33 PRK15451 tRNA cmo(5)U34 methyl 97.7 4.5E-05 9.8E-10 66.3 4.6 45 158-202 57-104 (247)
34 PRK14103 trans-aconitate 2-met 97.7 6E-05 1.3E-09 65.4 5.2 42 158-199 30-72 (255)
35 PRK13942 protein-L-isoaspartat 97.7 7.5E-05 1.6E-09 63.9 5.6 45 157-202 76-123 (212)
36 TIGR00138 gidB 16S rRNA methyl 97.7 6.5E-05 1.4E-09 63.3 5.0 45 158-202 43-88 (181)
37 PLN02233 ubiquinone biosynthes 97.7 6.3E-05 1.4E-09 66.4 5.1 42 158-200 74-118 (261)
38 PF01209 Ubie_methyltran: ubiE 97.6 6.8E-05 1.5E-09 65.8 5.1 46 157-202 47-94 (233)
39 TIGR00755 ksgA dimethyladenosi 97.6 9.8E-05 2.1E-09 64.5 6.0 44 157-201 29-72 (253)
40 PRK00121 trmB tRNA (guanine-N( 97.6 6.2E-05 1.4E-09 63.9 4.6 43 159-202 42-86 (202)
41 PRK12335 tellurite resistance 97.6 6E-05 1.3E-09 67.1 4.7 43 159-202 122-164 (287)
42 PRK13168 rumA 23S rRNA m(5)U19 97.6 8.7E-05 1.9E-09 70.1 5.7 44 158-202 298-341 (443)
43 PRK00312 pcm protein-L-isoaspa 97.6 0.00011 2.3E-09 62.0 5.5 45 157-202 78-122 (212)
44 PRK10909 rsmD 16S rRNA m(2)G96 97.6 8.8E-05 1.9E-09 64.0 4.9 44 159-202 55-98 (199)
45 PRK07580 Mg-protoporphyrin IX 97.6 8.5E-05 1.9E-09 62.2 4.6 44 158-202 64-107 (230)
46 COG2813 RsmC 16S RNA G1207 met 97.6 0.00014 3E-09 67.3 6.2 62 131-202 141-204 (300)
47 TIGR00740 methyltransferase, p 97.6 7.7E-05 1.7E-09 64.0 4.2 45 158-202 54-101 (239)
48 PRK06202 hypothetical protein; 97.6 5.4E-05 1.2E-09 64.6 3.2 43 158-201 61-109 (232)
49 PRK09489 rsmC 16S ribosomal RN 97.5 0.0002 4.3E-09 66.4 6.8 151 37-202 78-242 (342)
50 TIGR00406 prmA ribosomal prote 97.5 0.0002 4.2E-09 64.1 6.3 44 159-202 161-204 (288)
51 PLN02585 magnesium protoporphy 97.5 9.5E-05 2.1E-09 68.0 4.4 43 158-201 145-187 (315)
52 PF13489 Methyltransf_23: Meth 97.5 0.00019 4.1E-09 55.9 5.5 38 157-195 22-59 (161)
53 PRK05134 bifunctional 3-demeth 97.5 0.00018 3.8E-09 61.0 5.5 44 157-201 48-91 (233)
54 TIGR00091 tRNA (guanine-N(7)-) 97.5 0.00012 2.7E-09 61.5 4.5 44 159-202 18-62 (194)
55 PRK14896 ksgA 16S ribosomal RN 97.5 0.00021 4.6E-09 62.8 6.0 43 158-201 30-72 (258)
56 PLN02336 phosphoethanolamine N 97.5 0.00021 4.5E-09 67.3 6.2 61 133-201 250-310 (475)
57 TIGR00479 rumA 23S rRNA (uraci 97.5 0.00014 3.1E-09 68.0 4.8 44 158-202 293-336 (431)
58 PRK00517 prmA ribosomal protei 97.5 0.00017 3.7E-09 63.0 4.9 45 158-202 120-164 (250)
59 TIGR03438 probable methyltrans 97.4 0.00016 3.5E-09 65.1 4.6 44 159-202 65-110 (301)
60 PRK03522 rumB 23S rRNA methylu 97.4 0.00019 4.1E-09 64.9 4.9 43 159-202 175-217 (315)
61 TIGR00537 hemK_rel_arch HemK-r 97.4 0.00028 6.1E-09 58.0 5.4 43 159-202 21-63 (179)
62 PRK13944 protein-L-isoaspartat 97.4 0.00021 4.6E-09 60.6 4.7 45 157-202 72-119 (205)
63 PRK00377 cbiT cobalt-precorrin 97.4 0.00029 6.4E-09 59.1 5.1 46 157-202 40-87 (198)
64 PTZ00338 dimethyladenosine tra 97.4 0.00035 7.5E-09 63.6 5.9 45 157-202 36-80 (294)
65 TIGR00452 methyltransferase, p 97.4 0.00028 6.1E-09 64.9 5.3 39 158-196 122-160 (314)
66 PRK00216 ubiE ubiquinone/menaq 97.4 0.00024 5.3E-09 59.1 4.4 45 158-202 52-98 (239)
67 PF03848 TehB: Tellurite resis 97.3 0.00021 4.4E-09 62.0 4.1 42 158-200 31-72 (192)
68 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00035 7.7E-09 64.8 5.9 43 159-202 208-250 (362)
69 PF05401 NodS: Nodulation prot 97.3 0.00037 8.1E-09 61.3 5.5 46 156-202 42-87 (201)
70 PLN02244 tocopherol O-methyltr 97.3 0.00026 5.6E-09 64.9 4.7 46 157-202 118-163 (340)
71 TIGR01983 UbiG ubiquinone bios 97.3 0.00044 9.6E-09 57.8 5.6 44 158-202 46-89 (224)
72 KOG1270 Methyltransferases [Co 97.3 0.0005 1.1E-08 63.1 5.9 42 158-200 90-131 (282)
73 TIGR00417 speE spermidine synt 97.3 0.00055 1.2E-08 60.6 6.1 75 123-202 43-118 (270)
74 PRK13943 protein-L-isoaspartat 97.3 0.00039 8.4E-09 64.2 5.1 44 158-202 81-127 (322)
75 TIGR01934 MenG_MenH_UbiE ubiqu 97.3 0.001 2.2E-08 54.7 7.1 45 157-201 39-85 (223)
76 TIGR02143 trmA_only tRNA (urac 97.2 0.00028 6E-09 65.3 4.0 42 160-202 200-241 (353)
77 PRK14968 putative methyltransf 97.2 0.0007 1.5E-08 54.6 5.5 44 158-202 24-67 (188)
78 PRK15068 tRNA mo(5)U34 methylt 97.2 0.00056 1.2E-08 62.6 5.5 40 158-197 123-162 (322)
79 COG2263 Predicted RNA methylas 97.2 0.0011 2.4E-08 58.2 7.0 46 157-202 45-90 (198)
80 COG2227 UbiG 2-polyprenyl-3-me 97.2 0.00039 8.3E-09 62.8 4.2 45 157-202 59-103 (243)
81 TIGR02072 BioC biotin biosynth 97.2 0.00059 1.3E-08 56.5 5.0 43 159-201 36-79 (240)
82 PHA01634 hypothetical protein 97.2 0.00048 1E-08 58.0 4.4 44 159-202 30-73 (156)
83 PRK15128 23S rRNA m(5)C1962 me 97.1 0.00087 1.9E-08 63.4 6.3 44 159-202 222-265 (396)
84 PF13659 Methyltransf_26: Meth 97.1 0.00072 1.6E-08 50.8 4.6 44 159-202 2-45 (117)
85 PRK14967 putative methyltransf 97.1 0.00087 1.9E-08 57.3 5.6 44 158-201 37-80 (223)
86 PF00398 RrnaAD: Ribosomal RNA 97.1 0.00096 2.1E-08 58.9 6.1 56 137-201 18-73 (262)
87 PRK04266 fibrillarin; Provisio 97.1 0.00067 1.5E-08 59.4 4.6 44 157-201 72-117 (226)
88 TIGR02081 metW methionine bios 97.1 0.00065 1.4E-08 56.6 4.3 40 159-198 15-54 (194)
89 cd02440 AdoMet_MTases S-adenos 97.1 0.00078 1.7E-08 46.4 3.8 39 160-198 1-39 (107)
90 PRK08317 hypothetical protein; 97.0 0.0013 2.7E-08 54.2 5.5 43 157-199 19-63 (241)
91 PRK11873 arsM arsenite S-adeno 97.0 0.00093 2E-08 58.3 5.0 45 157-201 77-123 (272)
92 TIGR03534 RF_mod_PrmC protein- 97.0 0.00081 1.8E-08 56.9 4.3 44 159-202 89-133 (251)
93 PLN02366 spermidine synthase 97.0 0.0014 3E-08 60.2 6.1 75 123-202 62-137 (308)
94 TIGR03840 TMPT_Se_Te thiopurin 97.0 0.0012 2.5E-08 57.3 5.3 39 159-198 36-74 (213)
95 PRK11705 cyclopropane fatty ac 97.0 0.0014 3E-08 61.5 6.1 45 157-201 167-211 (383)
96 PRK14902 16S rRNA methyltransf 97.0 0.0019 4E-08 61.1 6.6 45 158-202 251-297 (444)
97 TIGR00478 tly hemolysin TlyA f 97.0 0.0012 2.6E-08 58.4 5.0 43 157-199 75-118 (228)
98 TIGR00446 nop2p NOL1/NOP2/sun 96.9 0.0013 2.8E-08 58.2 5.1 46 157-202 71-118 (264)
99 PF02353 CMAS: Mycolic acid cy 96.9 0.00087 1.9E-08 60.3 4.0 47 156-202 61-107 (273)
100 TIGR00095 RNA methyltransferas 96.9 0.0012 2.5E-08 56.2 4.5 45 158-202 50-94 (189)
101 COG2242 CobL Precorrin-6B meth 96.8 0.0019 4.2E-08 56.3 5.2 47 156-202 33-80 (187)
102 PRK14901 16S rRNA methyltransf 96.8 0.0025 5.4E-08 60.3 6.3 46 157-202 252-299 (434)
103 TIGR02085 meth_trns_rumB 23S r 96.8 0.0016 3.4E-08 60.7 4.7 43 159-202 235-277 (374)
104 PRK09328 N5-glutamine S-adenos 96.8 0.0013 2.8E-08 56.8 3.8 44 158-201 109-153 (275)
105 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.0024 5.2E-08 64.2 6.1 59 134-202 525-583 (702)
106 PRK03612 spermidine synthase; 96.8 0.0028 6.1E-08 61.6 6.3 73 122-199 267-340 (521)
107 KOG3010 Methyltransferase [Gen 96.8 0.0016 3.5E-08 59.2 4.3 40 159-199 35-74 (261)
108 COG2518 Pcm Protein-L-isoaspar 96.7 0.0032 7E-08 55.7 5.9 64 128-202 53-116 (209)
109 PRK10901 16S rRNA methyltransf 96.7 0.0037 8E-08 59.0 6.6 46 157-202 244-290 (427)
110 TIGR03533 L3_gln_methyl protei 96.7 0.0015 3.4E-08 58.6 3.9 44 159-202 123-167 (284)
111 PLN02490 MPBQ/MSBQ methyltrans 96.7 0.0018 3.9E-08 60.5 4.3 43 158-200 114-157 (340)
112 COG0030 KsgA Dimethyladenosine 96.7 0.0023 5E-08 58.0 4.9 43 158-201 31-73 (259)
113 PF01135 PCMT: Protein-L-isoas 96.7 0.0017 3.7E-08 56.6 3.9 45 157-202 72-119 (209)
114 PRK14903 16S rRNA methyltransf 96.7 0.0042 9.1E-08 59.1 6.7 46 157-202 237-284 (431)
115 PRK13255 thiopurine S-methyltr 96.7 0.0032 6.8E-08 54.8 5.4 39 158-197 38-76 (218)
116 PF05958 tRNA_U5-meth_tr: tRNA 96.7 0.004 8.8E-08 57.7 6.3 42 160-202 199-240 (352)
117 PRK11088 rrmA 23S rRNA methylt 96.7 0.0022 4.7E-08 56.5 4.3 43 158-200 86-132 (272)
118 TIGR00536 hemK_fam HemK family 96.6 0.002 4.3E-08 57.4 4.0 44 159-202 116-160 (284)
119 TIGR03704 PrmC_rel_meth putati 96.6 0.002 4.3E-08 56.9 3.7 44 159-202 88-132 (251)
120 PRK14121 tRNA (guanine-N(7)-)- 96.6 0.0034 7.4E-08 59.9 5.5 57 137-202 110-168 (390)
121 PHA03411 putative methyltransf 96.6 0.0026 5.6E-08 58.4 4.4 42 159-200 66-108 (279)
122 smart00828 PKS_MT Methyltransf 96.6 0.003 6.6E-08 53.1 4.4 43 160-202 2-45 (224)
123 TIGR00563 rsmB ribosomal RNA s 96.5 0.0046 1E-07 58.3 5.7 44 158-202 239-284 (426)
124 PRK14904 16S rRNA methyltransf 96.5 0.0036 7.9E-08 59.4 5.0 45 158-202 251-297 (445)
125 COG2230 Cfa Cyclopropane fatty 96.3 0.006 1.3E-07 56.1 5.3 46 156-202 71-117 (283)
126 PRK11805 N5-glutamine S-adenos 96.3 0.0037 8E-08 57.0 3.8 44 159-202 135-179 (307)
127 PF06325 PrmA: Ribosomal prote 96.3 0.0052 1.1E-07 56.4 4.7 45 158-202 162-206 (295)
128 PRK04457 spermidine synthase; 96.3 0.0047 1E-07 55.0 4.3 44 159-202 68-112 (262)
129 COG4106 Tam Trans-aconitate me 96.3 0.006 1.3E-07 55.3 4.8 43 157-200 30-74 (257)
130 PRK14966 unknown domain/N5-glu 96.3 0.0042 9.1E-08 59.9 4.0 44 159-202 253-297 (423)
131 PRK01544 bifunctional N5-gluta 96.2 0.0052 1.1E-07 59.7 4.4 45 158-202 139-184 (506)
132 TIGR01177 conserved hypothetic 96.2 0.012 2.6E-07 53.5 6.5 45 157-202 182-226 (329)
133 TIGR00438 rrmJ cell division p 96.2 0.003 6.4E-08 52.4 2.3 36 157-192 32-69 (188)
134 COG2890 HemK Methylase of poly 96.2 0.0052 1.1E-07 55.5 3.9 42 160-202 113-156 (280)
135 TIGR02716 C20_methyl_CrtF C-20 96.0 0.0096 2.1E-07 53.1 4.5 45 157-202 149-194 (306)
136 PRK01581 speE spermidine synth 96.0 0.02 4.4E-07 54.6 6.8 72 122-198 120-192 (374)
137 PRK06922 hypothetical protein; 95.9 0.0081 1.8E-07 61.0 4.2 43 158-201 419-463 (677)
138 PTZ00146 fibrillarin; Provisio 95.9 0.014 3E-07 53.9 5.4 39 157-196 132-173 (293)
139 COG2264 PrmA Ribosomal protein 95.9 0.017 3.8E-07 53.5 5.9 67 127-202 141-207 (300)
140 PLN02823 spermine synthase 95.6 0.027 5.8E-07 52.5 6.1 88 110-202 61-149 (336)
141 PRK11188 rrmJ 23S rRNA methylt 95.6 0.0092 2E-07 51.3 2.8 33 158-190 52-86 (209)
142 KOG4300 Predicted methyltransf 95.5 0.014 3.1E-07 52.7 3.9 44 159-202 78-121 (252)
143 PHA03412 putative methyltransf 95.5 0.012 2.6E-07 53.1 3.3 42 159-200 51-96 (241)
144 PLN02781 Probable caffeoyl-CoA 95.5 0.025 5.3E-07 49.5 5.2 58 138-202 56-115 (234)
145 PF03602 Cons_hypoth95: Conser 95.5 0.021 4.5E-07 48.6 4.5 46 157-202 42-87 (183)
146 KOG0820 Ribosomal RNA adenine 95.4 0.026 5.7E-07 52.6 5.2 46 156-202 57-102 (315)
147 COG4976 Predicted methyltransf 95.4 0.013 2.8E-07 53.7 3.1 42 157-199 125-166 (287)
148 PF09445 Methyltransf_15: RNA 95.2 0.027 5.9E-07 47.9 4.4 42 160-202 2-43 (163)
149 PF09243 Rsm22: Mitochondrial 94.9 0.023 5.1E-07 50.9 3.3 59 139-202 19-80 (274)
150 KOG3987 Uncharacterized conser 94.9 0.014 3E-07 53.0 1.8 75 117-198 78-152 (288)
151 PRK04148 hypothetical protein; 94.9 0.049 1.1E-06 45.1 4.9 41 159-200 18-59 (134)
152 smart00138 MeTrc Methyltransfe 94.7 0.04 8.7E-07 49.0 4.3 44 157-200 99-152 (264)
153 PRK00050 16S rRNA m(4)C1402 me 94.7 0.068 1.5E-06 49.3 5.7 44 158-201 20-65 (296)
154 PF08704 GCD14: tRNA methyltra 94.6 0.042 9.1E-07 49.4 4.0 46 157-202 40-87 (247)
155 COG4123 Predicted O-methyltran 94.4 0.039 8.5E-07 49.9 3.6 44 158-202 45-90 (248)
156 PF02636 Methyltransf_28: Puta 94.4 0.042 9.1E-07 48.1 3.7 45 158-202 19-72 (252)
157 PF13679 Methyltransf_32: Meth 94.4 0.1 2.2E-06 41.9 5.6 47 156-202 24-75 (141)
158 COG0500 SmtA SAM-dependent met 94.4 0.06 1.3E-06 36.8 3.6 38 161-200 52-92 (257)
159 PF01596 Methyltransf_3: O-met 94.2 0.072 1.6E-06 46.3 4.7 57 139-202 34-92 (205)
160 PF08003 Methyltransf_9: Prote 94.2 0.076 1.7E-06 49.8 5.1 44 157-200 115-161 (315)
161 KOG1540 Ubiquinone biosynthesi 94.2 0.067 1.4E-06 49.6 4.6 44 157-200 100-150 (296)
162 PRK11727 23S rRNA mA1618 methy 94.0 0.072 1.6E-06 49.5 4.6 47 157-203 114-161 (321)
163 COG2265 TrmA SAM-dependent met 94.0 0.082 1.8E-06 51.0 4.9 45 157-202 293-337 (432)
164 PLN02672 methionine S-methyltr 93.9 0.052 1.1E-06 57.9 3.8 63 137-202 101-164 (1082)
165 PLN03075 nicotianamine synthas 93.9 0.11 2.4E-06 48.0 5.4 44 158-201 124-170 (296)
166 PF02475 Met_10: Met-10+ like- 93.7 0.078 1.7E-06 46.2 3.9 45 158-202 102-147 (200)
167 PF01564 Spermine_synth: Sperm 93.5 0.091 2E-06 46.5 4.1 75 123-202 47-122 (246)
168 COG4122 Predicted O-methyltran 93.5 0.18 3.8E-06 44.9 5.8 60 136-202 45-106 (219)
169 PRK04338 N(2),N(2)-dimethylgua 93.4 0.1 2.2E-06 49.4 4.3 44 159-202 59-103 (382)
170 PF05050 Methyltransf_21: Meth 93.3 0.14 3E-06 40.0 4.3 37 163-199 1-42 (167)
171 PLN02476 O-methyltransferase 93.3 0.18 3.8E-06 46.2 5.6 58 138-202 106-165 (278)
172 COG2519 GCD14 tRNA(1-methylade 93.2 0.1 2.2E-06 47.7 3.9 47 156-202 93-141 (256)
173 COG0357 GidB Predicted S-adeno 92.2 0.77 1.7E-05 40.7 8.0 89 101-202 22-116 (215)
174 PF10294 Methyltransf_16: Puta 91.7 0.23 4.9E-06 41.4 3.9 44 157-202 45-90 (173)
175 COG3963 Phospholipid N-methylt 91.6 0.24 5.3E-06 43.5 4.1 46 157-202 48-95 (194)
176 COG0421 SpeE Spermidine syntha 91.6 0.45 9.6E-06 43.6 6.0 45 159-203 78-123 (282)
177 KOG1541 Predicted protein carb 91.3 0.39 8.5E-06 44.0 5.2 40 158-198 51-90 (270)
178 KOG2940 Predicted methyltransf 91.2 0.19 4.1E-06 46.5 3.1 43 157-199 72-114 (325)
179 KOG1499 Protein arginine N-met 90.4 0.41 8.9E-06 45.5 4.7 45 157-202 60-104 (346)
180 PF02527 GidB: rRNA small subu 90.4 1.1 2.3E-05 38.5 6.8 86 104-200 6-95 (184)
181 PF07021 MetW: Methionine bios 90.4 0.39 8.5E-06 42.2 4.2 43 157-199 13-55 (193)
182 PF08123 DOT1: Histone methyla 90.3 0.63 1.4E-05 40.6 5.4 58 134-199 27-85 (205)
183 PF02390 Methyltransf_4: Putat 89.9 0.34 7.4E-06 41.5 3.4 52 160-219 20-72 (195)
184 KOG2904 Predicted methyltransf 89.9 0.37 8E-06 45.3 3.9 105 81-202 87-194 (328)
185 KOG1500 Protein arginine N-met 89.3 0.49 1.1E-05 45.9 4.3 45 157-202 177-221 (517)
186 PRK10742 putative methyltransf 89.2 0.59 1.3E-05 42.5 4.5 42 160-202 91-132 (250)
187 TIGR00308 TRM1 tRNA(guanine-26 88.6 0.65 1.4E-05 44.0 4.6 44 159-202 46-91 (374)
188 PRK11933 yebU rRNA (cytosine-C 88.6 0.79 1.7E-05 44.8 5.3 46 157-202 113-160 (470)
189 COG0742 N6-adenine-specific me 87.5 0.92 2E-05 39.7 4.5 46 157-202 43-88 (187)
190 PF01728 FtsJ: FtsJ-like methy 87.1 0.37 8.1E-06 39.5 1.8 35 157-191 23-59 (181)
191 COG1565 Uncharacterized conser 86.9 1.4 3.1E-05 42.2 5.8 90 106-202 29-131 (370)
192 PLN02589 caffeoyl-CoA O-methyl 86.0 1.3 2.9E-05 39.6 4.9 58 138-202 67-126 (247)
193 PRK13256 thiopurine S-methyltr 86.0 1.4 3E-05 39.3 4.8 41 158-199 44-84 (226)
194 TIGR03439 methyl_EasF probable 85.6 1.3 2.9E-05 41.1 4.8 83 107-201 38-125 (319)
195 PF05185 PRMT5: PRMT5 arginine 85.6 1.4 3E-05 42.8 5.1 42 158-199 187-233 (448)
196 PRK11760 putative 23S rRNA C24 84.4 0.82 1.8E-05 43.7 2.9 33 156-189 210-242 (357)
197 PRK00536 speE spermidine synth 84.2 1.4 3E-05 40.1 4.2 45 157-202 72-116 (262)
198 COG4076 Predicted RNA methylas 84.0 2.1 4.6E-05 38.7 5.1 41 159-200 34-74 (252)
199 PF04816 DUF633: Family of unk 83.9 1.3 2.7E-05 38.7 3.6 58 161-222 1-59 (205)
200 PF05724 TPMT: Thiopurine S-me 83.2 3.1 6.6E-05 36.4 5.8 41 157-198 37-77 (218)
201 COG1189 Predicted rRNA methyla 82.7 1.5 3.3E-05 40.0 3.8 34 157-190 79-112 (245)
202 KOG2899 Predicted methyltransf 81.3 1.7 3.7E-05 40.3 3.6 44 158-202 59-104 (288)
203 KOG3191 Predicted N6-DNA-methy 81.2 3.7 8.1E-05 36.6 5.5 42 159-200 45-88 (209)
204 PF00891 Methyltransf_2: O-met 80.7 1.4 3E-05 37.7 2.7 41 157-198 100-141 (241)
205 KOG2651 rRNA adenine N-6-methy 79.4 4 8.6E-05 40.1 5.5 103 81-198 77-194 (476)
206 PF01234 NNMT_PNMT_TEMT: NNMT/ 78.9 2.8 6.1E-05 38.1 4.2 47 156-202 55-101 (256)
207 KOG0790 Protein tyrosine phosp 78.4 2 4.4E-05 42.8 3.3 35 136-172 432-466 (600)
208 KOG2361 Predicted methyltransf 78.1 3 6.5E-05 38.5 4.1 41 160-200 74-117 (264)
209 PF10672 Methyltrans_SAM: S-ad 77.0 6 0.00013 36.4 5.8 60 133-202 109-168 (286)
210 TIGR02987 met_A_Alw26 type II 74.4 3.4 7.3E-05 40.1 3.6 45 158-202 32-85 (524)
211 KOG1271 Methyltransferases [Ge 73.3 3.3 7.1E-05 37.2 2.9 42 159-200 69-111 (227)
212 PF03291 Pox_MCEL: mRNA cappin 70.6 7 0.00015 36.5 4.6 44 157-200 62-105 (331)
213 KOG1501 Arginine N-methyltrans 67.0 12 0.00026 37.7 5.5 46 157-202 66-111 (636)
214 COG0220 Predicted S-adenosylme 66.0 8.1 0.00017 34.4 3.9 52 159-219 50-103 (227)
215 COG5459 Predicted rRNA methyla 65.4 3.2 6.9E-05 40.6 1.3 52 139-194 99-152 (484)
216 PF12147 Methyltransf_20: Puta 64.1 9.9 0.00021 35.9 4.2 46 157-202 135-183 (311)
217 COG0455 flhG Antiactivator of 63.2 9.8 0.00021 34.5 3.9 51 131-190 95-146 (262)
218 PF07942 N2227: N2227-like pro 63.0 15 0.00032 33.8 5.1 44 156-200 55-98 (270)
219 COG2384 Predicted SAM-dependen 62.7 14 0.00031 33.4 4.8 44 159-202 18-62 (226)
220 PF04445 SAM_MT: Putative SAM- 62.4 8.4 0.00018 34.8 3.3 41 159-200 77-117 (234)
221 PF01189 Nol1_Nop2_Fmu: NOL1/N 62.0 18 0.00038 32.8 5.3 46 157-202 85-132 (283)
222 COG2520 Predicted methyltransf 60.4 16 0.00036 34.6 5.0 45 158-202 189-233 (341)
223 KOG0821 Predicted ribosomal RN 60.3 5.2 0.00011 37.1 1.6 41 157-197 50-90 (326)
224 PRK01544 bifunctional N5-gluta 59.1 14 0.0003 36.2 4.5 43 157-200 347-391 (506)
225 PF03141 Methyltransf_29: Puta 55.8 11 0.00024 37.8 3.1 104 83-198 54-160 (506)
226 cd00315 Cyt_C5_DNA_methylase C 53.0 18 0.00038 32.4 3.8 43 160-202 2-44 (275)
227 KOG2187 tRNA uracil-5-methyltr 53.0 15 0.00032 37.1 3.5 87 111-202 318-427 (534)
228 KOG3045 Predicted RNA methylas 52.1 9.7 0.00021 35.9 2.0 47 140-194 170-216 (325)
229 COG3897 Predicted methyltransf 50.2 12 0.00026 33.7 2.2 43 156-199 78-120 (218)
230 COG1092 Predicted SAM-dependen 47.9 38 0.00082 32.8 5.3 60 133-202 203-262 (393)
231 COG0144 Sun tRNA and rRNA cyto 45.2 38 0.00082 31.8 4.8 45 157-202 156-204 (355)
232 KOG2915 tRNA(1-methyladenosine 44.6 39 0.00084 32.0 4.7 46 156-202 104-152 (314)
233 KOG1661 Protein-L-isoaspartate 43.6 38 0.00082 31.0 4.3 67 128-203 61-131 (237)
234 PRK11783 rlmL 23S rRNA m(2)G24 43.4 37 0.00081 34.6 4.8 45 158-202 191-278 (702)
235 PF01269 Fibrillarin: Fibrilla 41.2 45 0.00098 30.3 4.4 40 156-196 72-114 (229)
236 KOG0024 Sorbitol dehydrogenase 40.2 33 0.00072 33.0 3.6 46 156-202 168-215 (354)
237 COG4262 Predicted spermidine s 40.0 48 0.001 32.9 4.7 42 157-198 289-331 (508)
238 PLN02668 indole-3-acetate carb 37.8 12 0.00025 36.1 0.2 23 158-180 64-86 (386)
239 cd05188 MDR Medium chain reduc 37.2 53 0.0011 26.9 4.0 43 157-199 134-177 (271)
240 COG3640 CooC CO dehydrogenase 36.5 54 0.0012 30.3 4.3 53 138-198 122-175 (255)
241 PF01555 N6_N4_Mtase: DNA meth 35.2 68 0.0015 26.0 4.3 41 157-198 191-231 (231)
242 cd01483 E1_enzyme_family Super 34.6 29 0.00062 27.4 2.0 29 161-189 2-32 (143)
243 PF02384 N6_Mtase: N-6 DNA Met 33.9 1E+02 0.0022 27.4 5.6 44 157-200 46-97 (311)
244 PF01170 UPF0020: Putative RNA 31.9 29 0.00063 29.1 1.7 46 157-202 28-83 (179)
245 KOG4589 Cell division protein 31.5 25 0.00054 31.8 1.2 17 157-173 69-85 (232)
246 KOG3420 Predicted RNA methylas 29.6 52 0.0011 28.9 2.8 44 157-200 48-91 (185)
247 PF02254 TrkA_N: TrkA-N domain 28.8 66 0.0014 23.9 3.0 33 167-199 5-40 (116)
248 cd08283 FDH_like_1 Glutathione 27.5 75 0.0016 29.1 3.7 43 157-199 184-228 (386)
249 PF06080 DUF938: Protein of un 27.5 52 0.0011 29.2 2.5 40 160-200 28-69 (204)
250 KOG4058 Uncharacterized conser 26.6 1.2E+02 0.0025 26.9 4.4 40 158-197 73-112 (199)
251 PF07091 FmrO: Ribosomal RNA m 26.4 1.5E+02 0.0032 27.3 5.3 59 137-202 91-151 (251)
252 KOG2920 Predicted methyltransf 26.2 56 0.0012 30.5 2.6 38 157-194 116-153 (282)
253 KOG3115 Methyltransferase-like 26.1 48 0.001 30.4 2.1 45 130-182 40-84 (249)
254 KOG1227 Putative methyltransfe 25.8 58 0.0013 31.3 2.7 86 116-202 145-240 (351)
255 PF01656 CbiA: CobQ/CobB/MinD/ 25.4 1.3E+02 0.0027 24.0 4.3 43 158-200 96-138 (195)
256 TIGR00006 S-adenosyl-methyltra 23.8 1.8E+02 0.0038 27.3 5.4 45 158-202 21-66 (305)
257 PRK13699 putative methylase; P 23.2 2E+02 0.0043 25.2 5.4 45 157-202 163-207 (227)
258 cd08254 hydroxyacyl_CoA_DH 6-h 22.9 1.2E+02 0.0026 26.1 3.9 41 158-198 166-207 (338)
259 PF07757 AdoMet_MTase: Predict 22.7 92 0.002 25.5 2.9 59 107-178 20-78 (112)
260 KOG2798 Putative trehalase [Ca 22.3 88 0.0019 30.3 3.2 40 157-197 150-189 (369)
261 PRK06035 3-hydroxyacyl-CoA deh 21.9 98 0.0021 27.4 3.2 39 160-199 5-45 (291)
262 KOG0792 Protein tyrosine phosp 21.5 1E+02 0.0022 33.9 3.8 42 133-178 1043-1084(1144)
263 PF05148 Methyltransf_8: Hypot 21.0 52 0.0011 29.8 1.3 32 158-190 73-106 (219)
264 KOG2094 Predicted DNA damage i 20.7 58 0.0013 32.2 1.6 34 130-178 267-300 (490)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=100.00 E-value=3.9e-40 Score=287.96 Aligned_cols=114 Identities=50% Similarity=0.930 Sum_probs=94.0
Q ss_pred hhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCC
Q 027421 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (223)
Q Consensus 102 k~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~ 181 (223)
+..||.++.+||++++||+|||||||++||++||++|+.||++|..+..+ ......+||||||||||||++||+++|+
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999999875322 2346789999999999999999999999
Q ss_pred eeEEecCcHHHHHHHHHhhCccCCCCCCCCCcceEEEccCCC
Q 027421 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV 223 (223)
Q Consensus 182 ~VDlVEP~e~Fle~Ake~l~~~~~~~~~~~kv~nf~cvgLQ~ 223 (223)
+||||||+++|+++|+++++. +..++++|||+|||+
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~------~~~~v~~~~~~gLQ~ 115 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGK------DNPRVGEFYCVGLQD 115 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCC------GGCCEEEEEES-GGG
T ss_pred EeEEeccCHHHHHHHHHHhcc------cCCCcceEEecCHhh
Confidence 999999999999999999955 347999999999996
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.71 E-value=8.3e-18 Score=155.74 Aligned_cols=114 Identities=30% Similarity=0.389 Sum_probs=97.2
Q ss_pred hhhhhhhhhhhhcccCCccchhc-cccCCCcccc---cchhhHHHHHHHHhcCCCCC--cCCCcceeeeccCCCcccccH
Q 027421 100 EKKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITK 173 (223)
Q Consensus 100 ~~k~~~Y~~a~~YWe~veaTvdG-MLGGf~~vs~---~Di~~Sr~FL~~L~~~~~~~--~~~~~~~rALDcGAGIGRVTk 173 (223)
.+.-.+|.+++.||.++.++++| |||||.+.+. .|+.+|..|++.+...+..+ .+-.....++|||+||||+++
T Consensus 114 ~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k 193 (342)
T KOG3178|consen 114 MNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLK 193 (342)
T ss_pred hhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHH
Confidence 34457899999999999999999 8999999877 99999999999987632111 112346799999999999999
Q ss_pred HHHhhcCCeeEEecCcHHHHHHHHHhhCccCCCCCCCCCcceEEEccCCC
Q 027421 174 NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV 223 (223)
Q Consensus 174 ~LLl~~f~~VDlVEP~e~Fle~Ake~l~~~~~~~~~~~kv~nf~cvgLQ~ 223 (223)
.+|+ .|.+|++|+++..|+.++..+++. +|+++++.++|+
T Consensus 194 ~ll~-~fp~ik~infdlp~v~~~a~~~~~---------gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 194 NLLS-KYPHIKGINFDLPFVLAAAPYLAP---------GVEHVAGDMFQD 233 (342)
T ss_pred HHHH-hCCCCceeecCHHHHHhhhhhhcC---------Ccceeccccccc
Confidence 9888 899999999999999999999842 499999999996
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.40 E-value=3.8e-07 Score=67.98 Aligned_cols=42 Identities=29% Similarity=0.243 Sum_probs=37.8
Q ss_pred eeeeccCCCcccccHHHHh-hcCCeeEEecCcHHHHHHHHHhh
Q 027421 159 LVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl-~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
.++||+|||.|+++..++. ....+|+.||+++.|++.|++++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 5899999999999999766 14668999999999999999988
No 4
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.12 E-value=4.5e-06 Score=70.45 Aligned_cols=43 Identities=21% Similarity=0.097 Sum_probs=37.2
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+|||+|||.|+.+..|. +...+|++||+++.+++.+++.+..
T Consensus 32 ~~vLDiGcG~G~~a~~La-~~g~~V~gvD~S~~~i~~a~~~~~~ 74 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLA-ANGFDVTAWDKNPMSIANLERIKAA 74 (197)
T ss_pred CcEEEECCCCCHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 589999999999999955 4455999999999999999987644
No 5
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.11 E-value=5.4e-06 Score=77.90 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=51.1
Q ss_pred CCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHH
Q 027421 115 GVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD 194 (223)
Q Consensus 115 ~veaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle 194 (223)
+++++++.||-++. -+.+|-.....+++.+.. .+..++||+|||+|++|.. |++.+.+|+.||+++.|++
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~--------~~~~~vLDlGcG~G~~~~~-la~~~~~v~giD~s~~~l~ 73 (475)
T PLN02336 4 SVDLTVEAMMLDSK-ASDLDKEERPEILSLLPP--------YEGKSVLELGAGIGRFTGE-LAKKAGQVIALDFIESVIK 73 (475)
T ss_pred cccccHHHHhhhcc-hhhcCchhhhHHHhhcCc--------cCCCEEEEeCCCcCHHHHH-HHhhCCEEEEEeCCHHHHH
Confidence 45667766654432 122332333445554432 1235899999999999999 5566889999999999999
Q ss_pred HHHHh
Q 027421 195 AARES 199 (223)
Q Consensus 195 ~Ake~ 199 (223)
.+++.
T Consensus 74 ~a~~~ 78 (475)
T PLN02336 74 KNESI 78 (475)
T ss_pred HHHHH
Confidence 88753
No 6
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.06 E-value=1.5e-05 Score=70.44 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=52.8
Q ss_pred CCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 126 Gf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
|...+|.--+..+..+|..+.. .+..++||+|||+|..+..+....-.+|+.||+++.|++.|++.+.
T Consensus 29 g~~~~~~gg~~~~~~~l~~l~l--------~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 29 GEDYISSGGIEATTKILSDIEL--------NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred CCCCCCCCchHHHHHHHHhCCC--------CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC
Confidence 3455666666678888888754 2346899999999999988544333599999999999999998764
No 7
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.04 E-value=1.2e-05 Score=60.13 Aligned_cols=45 Identities=22% Similarity=0.111 Sum_probs=37.8
Q ss_pred ceeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|+++..++...- .+|..||+++.+++.+++++..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 65 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR 65 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 35899999999999999655432 5899999999999999987644
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.03 E-value=1.1e-05 Score=57.19 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=33.9
Q ss_pred eccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 162 LDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
||+|||.|+.+.. |++. ..+|+.+|+++.+++.+++....
T Consensus 1 LdiG~G~G~~~~~-l~~~~~~~v~~~D~~~~~~~~~~~~~~~ 41 (95)
T PF08241_consen 1 LDIGCGTGRFAAA-LAKRGGASVTGIDISEEMLEQARKRLKN 41 (95)
T ss_dssp EEET-TTSHHHHH-HHHTTTCEEEEEES-HHHHHHHHHHTTT
T ss_pred CEecCcCCHHHHH-HHhccCCEEEEEeCCHHHHHHHHhcccc
Confidence 8999999999998 5555 88999999999999999998754
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.02 E-value=2.3e-05 Score=72.26 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=37.2
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
...++||+|||.|+++.. |+....+|+.||+++.|++.|++..
T Consensus 131 ~g~~ILDIGCG~G~~s~~-La~~g~~V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEP-LARMGATVTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CCCEEEEeeCCCCHHHHH-HHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 345899999999999998 5566679999999999999999765
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.98 E-value=9.1e-06 Score=70.58 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=38.0
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..| +....+|++||+++.|++.|++++..
T Consensus 46 ~~vLDiGcG~G~~a~~l-a~~g~~v~~vD~s~~~l~~a~~~~~~ 88 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKL-AELGHQVILCDLSAEMIQRAKQAAEA 88 (255)
T ss_pred CEEEEeCCCchHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHh
Confidence 58999999999999985 55577999999999999999988744
No 11
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.97 E-value=1e-05 Score=69.62 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=43.6
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhh
Q 027421 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 137 ~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l 200 (223)
-++.+|..+.. .+..++||+|||.|++|..|.... ..+|..||+++.|++.|++++
T Consensus 19 ~~~~ll~~~~~--------~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~ 75 (258)
T PRK01683 19 PARDLLARVPL--------ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL 75 (258)
T ss_pred HHHHHHhhCCC--------cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC
Confidence 34566665543 234689999999999999865443 369999999999999999876
No 12
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.97 E-value=1.2e-05 Score=67.64 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=36.2
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
.++||+|||.|+.+..+. +...+|++||+++.|++.+++...
T Consensus 32 ~~vLDiGcG~G~~a~~la-~~g~~V~~iD~s~~~l~~a~~~~~ 73 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLS-LAGYDVRAWDHNPASIASVLDMKA 73 (195)
T ss_pred CcEEEeCCCCCHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHH
Confidence 589999999999999854 445699999999999999887653
No 13
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.95 E-value=7.6e-06 Score=61.11 Aligned_cols=41 Identities=32% Similarity=0.533 Sum_probs=33.4
Q ss_pred eeccCCCcccccHHHHhhcC-----CeeEEecCcHHHHHHHHHhhCc
Q 027421 161 ALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 161 ALDcGAGIGRVTk~LLl~~f-----~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
|||+|||.||++..| .+.| .+++.||.++.|++.++++...
T Consensus 1 ILDlgcG~G~~~~~l-~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~ 46 (101)
T PF13649_consen 1 ILDLGCGTGRVTRAL-ARRFDAGPSSRVIGVDISPEMLELAKKRFSE 46 (101)
T ss_dssp -EEET-TTSHHHHHH-HHHS-----SEEEEEES-HHHHHHHHHHSHH
T ss_pred CEEeecCCcHHHHHH-HHHhhhcccceEEEEECCHHHHHHHHHhchh
Confidence 699999999999995 5556 8999999999999999988743
No 14
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.93 E-value=7.6e-07 Score=65.84 Aligned_cols=41 Identities=34% Similarity=0.435 Sum_probs=33.5
Q ss_pred eccCCCcccccHHHHhh-cCCeeEEecCcHHHHHHHHHhhCc
Q 027421 162 LDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 162 LDcGAGIGRVTk~LLl~-~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
||+|||+|+.+..++.. -..+|+.||+|+.|++.|++.+..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~ 42 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE 42 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh
Confidence 79999999999997666 267999999999999888877655
No 15
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.91 E-value=1.7e-05 Score=64.97 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=38.8
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|.+|..++.. ..+|++||.++.|++.+++++..
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~ 57 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc
Confidence 358999999999999996655 78999999999999999998743
No 16
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.88 E-value=2.5e-05 Score=65.22 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=37.8
Q ss_pred cceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||.|.+|..+.... -.+|++||+++.|++.+++++..
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 34689999999999999864221 26999999999999999998744
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.88 E-value=2.8e-05 Score=62.04 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=37.4
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||.|+++..++..+ -.+|..||.++.|++.|++.+..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~ 50 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE 50 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc
Confidence 34689999999999999965333 46899999999999999997643
No 18
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.86 E-value=2.6e-05 Score=73.57 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=50.7
Q ss_pred cccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 131 s~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...| .+++-||+.|... ...++||+|||.|.++..+.... -.+|++||.++.+++.|++++..
T Consensus 211 ~~LD-~GtrllL~~lp~~--------~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 211 TGLD-IGARFFMQHLPEN--------LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred CCcC-hHHHHHHHhCCcc--------cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4567 6889999988652 12489999999999999965543 35999999999999999998743
No 19
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.83 E-value=2.5e-05 Score=67.11 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=37.0
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
..++||+|||.|.+|..| .....+|..+|.++.|++.|++..
T Consensus 43 ~~~vLDiGcG~G~~~~~l-~~~~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYW-RERGSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHH-HHcCCeEEEEECCHHHHHHHHhhC
Confidence 468999999999999885 455789999999999999999875
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.83 E-value=4.2e-05 Score=65.24 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=56.9
Q ss_pred hhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhh-cCCeeE
Q 027421 106 YREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR-YFNEVD 184 (223)
Q Consensus 106 Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~-~f~~VD 184 (223)
|....+=|+.+= + +-.+...+....+.|++.+...... .+..++||+|||.|.++..+... ...+|+
T Consensus 6 ~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~d~l~l~~~l----~~g~~VLDiGcGtG~~al~la~~~~~~~V~ 73 (187)
T PRK00107 6 YVELLVKWNKKY---N-----LTAIRDPEELWERHILDSLAIAPYL----PGGERVLDVGSGAGFPGIPLAIARPELKVT 73 (187)
T ss_pred HHHHHHHhcccc---c-----ccccCCHHHHHHHHHHHHHHHHhhc----CCCCeEEEEcCCCCHHHHHHHHHCCCCeEE
Confidence 455555565431 1 3334444445566777776442221 12468999999999999886542 246999
Q ss_pred EecCcHHHHHHHHHhhCc
Q 027421 185 LLEPVSHFLDAARESLAP 202 (223)
Q Consensus 185 lVEP~e~Fle~Ake~l~~ 202 (223)
.||+++.|++.|++++..
T Consensus 74 giD~s~~~l~~A~~~~~~ 91 (187)
T PRK00107 74 LVDSLGKKIAFLREVAAE 91 (187)
T ss_pred EEeCcHHHHHHHHHHHHH
Confidence 999999999999988755
No 21
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.83 E-value=3e-05 Score=65.92 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=39.0
Q ss_pred cceeeeccCCCcccccHHHHhhcCCe---eEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~---VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||+|.+|.. |++.+.. |..||.++.+++.|++++..
T Consensus 77 ~~~~VLDiG~GsG~~a~~-la~~~~~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAV-LAEIVGRDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred CcCEEEEECCCccHHHHH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 346999999999999976 6777665 99999999999999998754
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.82 E-value=2.6e-05 Score=65.82 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 139 r~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+.+|..+.. .+..++||+|||.|.++..+.... -.+|..||+++.|++.|++.+..
T Consensus 35 ~~~l~~l~~--------~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 92 (231)
T TIGR02752 35 KDTMKRMNV--------QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD 92 (231)
T ss_pred HHHHHhcCC--------CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 556665543 234689999999999998854332 24999999999999999988743
No 23
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.80 E-value=3.7e-05 Score=70.01 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=55.5
Q ss_pred ccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHH
Q 027421 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA 196 (223)
Q Consensus 117 eaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~A 196 (223)
..++||+| |.+.+.-.--+.-++||. ..+....+.....+.||+|||-|-||.. |.+.|++|.+-|-|..|...+
T Consensus 58 ~T~iNG~L-gRG~MFvfS~~Q~~~LL~---~~~~~~~~~~~~~~lLDlGAGdG~VT~~-l~~~f~~v~aTE~S~~Mr~rL 132 (265)
T PF05219_consen 58 KTDINGIL-GRGSMFVFSEEQFRKLLR---ISGFSWNPDWKDKSLLDLGAGDGEVTER-LAPLFKEVYATEASPPMRWRL 132 (265)
T ss_pred HHhHhhhh-cCCcEEEecHHHHHHHhh---hhccCCCCcccCCceEEecCCCcHHHHH-HHhhcceEEeecCCHHHHHHH
Confidence 45889999 456555443334444444 3222211223557899999999999999 799999999999999998888
Q ss_pred HHh
Q 027421 197 RES 199 (223)
Q Consensus 197 ke~ 199 (223)
++.
T Consensus 133 ~~k 135 (265)
T PF05219_consen 133 SKK 135 (265)
T ss_pred HhC
Confidence 763
No 24
>PRK00811 spermidine synthase; Provisional
Probab=97.80 E-value=4.1e-05 Score=68.65 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=53.3
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhh-cCCeeEEecCcHHHHHHHHHhhC
Q 027421 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 123 MLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~-~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
+|.|....+..|-..-...|..+..-.. ....+||+||||.|.++..+|.. -..+||+||.++.+++.|++++.
T Consensus 47 ~lDg~~q~~~~de~~Y~e~l~h~~~~~~-----~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~ 121 (283)
T PRK00811 47 ALDGCVMTTERDEFIYHEMMTHVPLFAH-----PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLP 121 (283)
T ss_pred EECCeeeecCcchhhHHHHhhhHHHhhC-----CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhH
Confidence 4566666666663333345554432111 23358999999999999998765 46899999999999999999985
Q ss_pred c
Q 027421 202 P 202 (223)
Q Consensus 202 ~ 202 (223)
.
T Consensus 122 ~ 122 (283)
T PRK00811 122 E 122 (283)
T ss_pred H
Confidence 4
No 25
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.79 E-value=3.9e-05 Score=64.80 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=38.9
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||.|.++..+. ....+|+.||.++.|++.|++.+..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la-~~~~~v~gvD~s~~~i~~a~~~~~~ 99 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA-KRGAIVKAVDISEQMVQMARNRAQG 99 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHh
Confidence 34689999999999999954 5567999999999999999988743
No 26
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.79 E-value=4.1e-05 Score=68.38 Aligned_cols=45 Identities=29% Similarity=0.312 Sum_probs=39.9
Q ss_pred cceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||||||+|.+|.. |++.+ .+|+++|+|+.||+.|++.+.+
T Consensus 51 ~g~~vLDva~GTGd~a~~-~~k~~g~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 51 PGDKVLDVACGTGDMALL-LAKSVGTGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred CCCEEEEecCCccHHHHH-HHHhcCCceEEEEECCHHHHHHHHHHhhc
Confidence 346899999999999998 67767 8999999999999999998754
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.78 E-value=5.1e-05 Score=62.53 Aligned_cols=59 Identities=24% Similarity=0.257 Sum_probs=46.8
Q ss_pred hhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCC-eeEEecCcHHHHHHHHHhhCc
Q 027421 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 136 ~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~-~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+|+-+++.+... ...++||+|||.|-++..++...-+ +|++||-++..++.+++++..
T Consensus 18 ~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 18 AGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp HHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4667777777652 3358999999999999985554443 599999999999999998855
No 28
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.78 E-value=4.1e-05 Score=67.95 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=37.7
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
..++||+|||.|.+|..++ +.+.+|++||.++.|++.+++++.
T Consensus 43 ~~~VLEiG~G~G~lt~~L~-~~~~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLL-ERAAKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred cCeEEEeCCCccHHHHHHH-HhCCcEEEEECCHHHHHHHHHhhc
Confidence 4689999999999999955 556799999999999999998763
No 29
>PRK05785 hypothetical protein; Provisional
Probab=97.75 E-value=6.1e-05 Score=65.30 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=35.0
Q ss_pred eeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHh
Q 027421 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~ 199 (223)
.++||+|||+|.++..| .+.+ .+|+.||+++.|++.|++.
T Consensus 53 ~~VLDlGcGtG~~~~~l-~~~~~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 53 KKVLDVAAGKGELSYHF-KKVFKYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CeEEEEcCCCCHHHHHH-HHhcCCEEEEECCCHHHHHHHHhc
Confidence 58999999999999884 5553 6999999999999999875
No 30
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.75 E-value=6.5e-05 Score=64.37 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=36.8
Q ss_pred ceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhh
Q 027421 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l 200 (223)
..+|||+|||.|..+..|.... ..+|+.||+++.|++.|++++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence 3579999999999999965432 578999999999999999875
No 31
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.74 E-value=5.9e-05 Score=62.40 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=37.6
Q ss_pred ceeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|.+|..+....- .+|+.||+++.+++.|++++..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45899999999999999654432 4899999999999999988744
No 32
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.73 E-value=4.5e-05 Score=59.54 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=36.2
Q ss_pred eeeccCCCcccccHHHHhhcCC-eeEEecCcHHHHHHHHHhhCc
Q 027421 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~-~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+||||||+|-.|..++..... +|.+|||++.+.+.+++++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH
Confidence 3799999999999986554433 799999999999999998754
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.69 E-value=4.5e-05 Score=66.33 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=37.5
Q ss_pred ceeeeccCCCcccccHHHHhh---cCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~---~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|..+..++.. --.+|+.||+++.|++.|++++..
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~ 104 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA 104 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 358999999999999885542 135999999999999999998754
No 34
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.69 E-value=6e-05 Score=65.35 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=35.2
Q ss_pred ceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHh
Q 027421 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~ 199 (223)
..++||+|||.|.++..+.... -.+|..||+++.|++.|++.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~ 72 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER 72 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc
Confidence 4689999999999999854432 35899999999999999874
No 35
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.68 E-value=7.5e-05 Score=63.91 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=38.4
Q ss_pred cceeeeccCCCcccccHHHHhhcC---CeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f---~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||.|-+|.. |++.+ .+|+.||+++.|++.|++++..
T Consensus 76 ~g~~VLdIG~GsG~~t~~-la~~~~~~~~V~~vE~~~~~~~~a~~~l~~ 123 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAV-VAEIVGKSGKVVTIERIPELAEKAKKTLKK 123 (212)
T ss_pred CcCEEEEECCcccHHHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 346899999999999966 55554 5999999999999999998854
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.67 E-value=6.5e-05 Score=63.26 Aligned_cols=45 Identities=29% Similarity=0.188 Sum_probs=36.7
Q ss_pred ceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|.+|..+.... ..+|++||+++.|++.+++++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~ 88 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE 88 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 3589999999999999854322 25799999999999999887644
No 37
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.67 E-value=6.3e-05 Score=66.39 Aligned_cols=42 Identities=24% Similarity=0.084 Sum_probs=35.4
Q ss_pred ceeeeccCCCcccccHHHHhhcC---CeeEEecCcHHHHHHHHHhh
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f---~~VDlVEP~e~Fle~Ake~l 200 (223)
..++||+|||.|+++.. |++.+ .+|+.||+++.|++.|++..
T Consensus 74 ~~~VLDlGcGtG~~~~~-la~~~~~~~~V~gvD~S~~ml~~A~~r~ 118 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFL-LSEKVGSDGKVMGLDFSSEQLAVAASRQ 118 (261)
T ss_pred CCEEEEECCcCCHHHHH-HHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence 46899999999999987 44443 48999999999999998754
No 38
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.65 E-value=6.8e-05 Score=65.84 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=34.6
Q ss_pred cceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||+|-+|..+..... .+|+.||+|+.|++.|++.+..
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~ 94 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR 94 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh
Confidence 346999999999999988554432 4899999999999999987644
No 39
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.65 E-value=9.8e-05 Score=64.46 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=38.7
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
+..++||+|||+|.+|.. |++.+.+|++||+++.|++.+++++.
T Consensus 29 ~~~~VLEiG~G~G~lt~~-L~~~~~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEP-LLKRAKKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CcCEEEEeCCCCCHHHHH-HHHhCCcEEEEECCHHHHHHHHHHhC
Confidence 346899999999999988 55667899999999999999998874
No 40
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.64 E-value=6.2e-05 Score=63.85 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=36.8
Q ss_pred eeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.+|..+. ..+ .+|+.||+++.|++.|++++..
T Consensus 42 ~~VLDiGcGtG~~~~~la-~~~p~~~v~gVD~s~~~i~~a~~~~~~ 86 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMA-KANPDINFIGIEVHEPGVGKALKKIEE 86 (202)
T ss_pred CeEEEEccCCCHHHHHHH-HHCCCccEEEEEechHHHHHHHHHHHH
Confidence 589999999999999854 443 5799999999999999987744
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.64 E-value=6e-05 Score=67.06 Aligned_cols=43 Identities=26% Similarity=0.206 Sum_probs=36.9
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.||.+..|... ..+|++||.++.+++.++++...
T Consensus 122 ~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999999996554 45999999999999999887643
No 42
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.62 E-value=8.7e-05 Score=70.12 Aligned_cols=44 Identities=32% Similarity=0.274 Sum_probs=39.1
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||+|.+|.. |++.+.+|..||.++.|++.|++++..
T Consensus 298 ~~~VLDlgcGtG~~sl~-la~~~~~V~gvD~s~~al~~A~~n~~~ 341 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLP-LARQAAEVVGVEGVEAMVERARENARR 341 (443)
T ss_pred CCEEEEEeccCCHHHHH-HHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 46899999999999998 566678999999999999999998744
No 43
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.61 E-value=0.00011 Score=62.04 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=39.4
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||.|.+|. +|+..+.+|..||.++.+++.|++++..
T Consensus 78 ~~~~VLeiG~GsG~~t~-~la~~~~~v~~vd~~~~~~~~a~~~~~~ 122 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAA-VLAHLVRRVFSVERIKTLQWEAKRRLKQ 122 (212)
T ss_pred CCCEEEEECCCccHHHH-HHHHHhCEEEEEeCCHHHHHHHHHHHHH
Confidence 34689999999999997 4777778999999999999999998754
No 44
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.59 E-value=8.8e-05 Score=63.97 Aligned_cols=44 Identities=30% Similarity=0.341 Sum_probs=40.6
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..+|...+.+|++||-++..++.|++++..
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~ 98 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLAT 98 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH
Confidence 58999999999999987888889999999999999999999755
No 45
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.58 E-value=8.5e-05 Score=62.21 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=37.8
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|.++..|+.. ..+|+.+|+++.|++.|++++..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPE 107 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHh
Confidence 358999999999999996544 55799999999999999988744
No 46
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00014 Score=67.32 Aligned_cols=62 Identities=29% Similarity=0.415 Sum_probs=51.7
Q ss_pred cccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 131 s~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++| .+|+-+|+.|... ...+|||+|||.|-++.. |++.+ .+|+|||-+..=++.|++++..
T Consensus 141 ~~lD-~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~-la~~~p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 141 DKLD-KGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLV-LAKKSPQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred CCcC-hHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHH-HHHhCCCCeEEEEecCHHHHHHHHHhHHH
Confidence 3566 7999999998762 223899999999999999 55555 4999999999999999999966
No 47
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.57 E-value=7.7e-05 Score=63.98 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=37.5
Q ss_pred ceeeeccCCCcccccHHHHhhc---CCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~---f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|..+..++..+ -.+|..||+++.|++.|++++..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~ 101 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA 101 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 3589999999999999865432 24799999999999999988744
No 48
>PRK06202 hypothetical protein; Provisional
Probab=97.57 E-value=5.4e-05 Score=64.65 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=35.7
Q ss_pred ceeeeccCCCcccccHHHHhhcC------CeeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f------~~VDlVEP~e~Fle~Ake~l~ 201 (223)
..++||+|||.|.++..| +..+ .+|+.||+++.|++.|++...
T Consensus 61 ~~~iLDlGcG~G~~~~~L-~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDL-ARWARRDGLRLEVTAIDPDPRAVAFARANPR 109 (232)
T ss_pred CcEEEEeccCCCHHHHHH-HHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence 468999999999999884 4321 389999999999999998753
No 49
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.55 E-value=0.0002 Score=66.39 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=88.0
Q ss_pred ceeeeecchhhhhhhhhhccccCCCCCCCcccccccccCCCCCcccCHHHHHHHHhccCCch---------hhh-hhhhh
Q 027421 37 TLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQ---------QEK-KTQWY 106 (223)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ds~g~~y~sw~EmWk~e~~~d~~~---------~~~-k~~~Y 106 (223)
.+=++.+-+-|..++..-+-+.+- -+.-..+-+.|...+|- +|...+.+........+ ... ....
T Consensus 78 d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g~--~s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~~~- 152 (342)
T PRK09489 78 DTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSGV--RSAEKMLADYAPLNKIDSARRCGLYHGRLEKQPV- 152 (342)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEeccccH--HHHHHHHHHhcCccccccceeEEEEEEeccccCC-
Confidence 344566666666555443333221 12234566888888885 78888877754321000 000 0011
Q ss_pred hhhhhcccCCcc---chhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcC-Ce
Q 027421 107 REGISYWEGVEA---SVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NE 182 (223)
Q Consensus 107 ~~a~~YWe~vea---TvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f-~~ 182 (223)
-+..+||..-+- ++...=|.|.. ...| .+|+.+|..|... ...++||+|||.|-++..++...- .+
T Consensus 153 ~~~~~~~~~y~~~~l~i~~~pgvFs~-~~lD-~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la~~~p~~~ 222 (342)
T PRK09489 153 FDADKFWKEYQVDGLTVKTLPGVFSR-DGLD-VGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLARHSPKIR 222 (342)
T ss_pred CcccccceeeecCCEEEEeCCCCCCC-CCCC-HHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHHHhCCCCE
Confidence 123556764321 22211222332 3455 5788888877641 124799999999999999554422 38
Q ss_pred eEEecCcHHHHHHHHHhhCc
Q 027421 183 VDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 183 VDlVEP~e~Fle~Ake~l~~ 202 (223)
|++||.++.+++.|++++..
T Consensus 223 v~~vDis~~Al~~A~~nl~~ 242 (342)
T PRK09489 223 LTLSDVSAAALESSRATLAA 242 (342)
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 99999999999999998755
No 50
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.52 E-value=0.0002 Score=64.15 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=38.7
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..++.....+|.+||.++.+++.|++++..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 68999999999999886555567999999999999999998754
No 51
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.52 E-value=9.5e-05 Score=67.98 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=37.6
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
..++||+|||+|+++..|. +...+|+.||.++.|++.|+++..
T Consensus 145 ~~~VLDlGcGtG~~a~~la-~~g~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLA-LEGAIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHH
Confidence 4689999999999999955 456699999999999999998864
No 52
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.52 E-value=0.00019 Score=55.87 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=33.5
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA 195 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~ 195 (223)
...++||+|||.|.+++.+ .+...+|+.||+++.+++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh
Confidence 4569999999999999995 6666699999999999987
No 53
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.51 E-value=0.00018 Score=60.99 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=37.2
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
+..++||+|||.|.++..+.. ...+|+.+|+++.+++.+++++.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~ 91 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHAL 91 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHH
Confidence 346899999999999988654 45689999999999999988753
No 54
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.50 E-value=0.00012 Score=61.45 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=37.1
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..+.... -.+|..||+++.|++.|++++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~ 62 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK 62 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH
Confidence 589999999999999965543 24899999999999999887644
No 55
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.49 E-value=0.00021 Score=62.84 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=38.2
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
..++||+|||.|.+|..++ +...+|++||.++.|++.+++++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~-~~~~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELA-KRAKKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred cCeEEEEeCccCHHHHHHH-HhCCEEEEEECCHHHHHHHHHHhc
Confidence 4689999999999999955 557899999999999999999874
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.49 E-value=0.00021 Score=67.27 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=44.9
Q ss_pred cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 133 ~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
.++...+.+++.+.. .+..++||+|||.|.++..|....-.+|+.||+++.+++.|+++..
T Consensus 250 ~~v~~te~l~~~~~~--------~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~ 310 (475)
T PLN02336 250 GGLETTKEFVDKLDL--------KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI 310 (475)
T ss_pred chHHHHHHHHHhcCC--------CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh
Confidence 344455566665532 2345899999999999988554444589999999999999988753
No 57
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.46 E-value=0.00014 Score=68.03 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=39.7
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||+|.+|.. |++.+.+|..||.++.+++.|++++..
T Consensus 293 ~~~vLDl~cG~G~~sl~-la~~~~~V~~vE~~~~av~~a~~n~~~ 336 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLP-LAKQAKSVVGIEVVPESVEKAQQNAEL 336 (431)
T ss_pred CCEEEEcCCCcCHHHHH-HHHhCCEEEEEEcCHHHHHHHHHHHHH
Confidence 36899999999999999 677788999999999999999998754
No 58
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.46 E-value=0.00017 Score=63.00 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=38.2
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||+|.++..+......+|..+|.++.+++.|++++..
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 468999999999999875444456799999999999999998754
No 59
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.43 E-value=0.00016 Score=65.05 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=38.3
Q ss_pred eeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|+.|..||... ..+|+.||-|+.||+.+.+.+..
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA 110 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence 579999999999999977665 36899999999999999887643
No 60
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.42 E-value=0.00019 Score=64.90 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=38.5
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||+|.+|..+ +....+|..||.++.+++.|++++..
T Consensus 175 ~~VLDl~cG~G~~sl~l-a~~~~~V~gvD~s~~av~~A~~n~~~ 217 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHC-ATPGMQLTGIEISAEAIACAKQSAAE 217 (315)
T ss_pred CEEEEccCCCCHHHHHH-HhcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 58999999999999994 55678999999999999999998754
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.41 E-value=0.00028 Score=57.98 Aligned_cols=43 Identities=16% Similarity=0.072 Sum_probs=37.3
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..+. ....+|..||.++.|++.+++++..
T Consensus 21 ~~vLdlG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~ 63 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLK-GKGKCILTTDINPFAVKELRENAKL 63 (179)
T ss_pred CeEEEeCCChhHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHH
Confidence 579999999999999855 4455999999999999999998743
No 62
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.40 E-value=0.00021 Score=60.63 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=37.9
Q ss_pred cceeeeccCCCcccccHHHHhhcC---CeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f---~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||+|.+|.. |++.+ .+|..||.++.|++.|++++..
T Consensus 72 ~~~~VLDiG~GsG~~~~~-la~~~~~~g~V~~iD~~~~~~~~a~~~l~~ 119 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAV-CAEAIERRGKVYTVEIVKELAIYAAQNIER 119 (205)
T ss_pred CCCEEEEECcCccHHHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 346899999999999976 55544 5999999999999999998754
No 63
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.37 E-value=0.00029 Score=59.12 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=38.5
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||+|.++..++... ..+|.+||.++.|++.|++++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45689999999999999864432 46999999999999999988644
No 64
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.36 E-value=0.00035 Score=63.61 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=39.2
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||.|.+|..++ +...+|.+||.++.|++.+++++..
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll-~~~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLL-QLAKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred CcCEEEEecCchHHHHHHHH-HhCCcEEEEECCHHHHHHHHHHHHh
Confidence 34689999999999999855 5578999999999999999998754
No 65
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.36 E-value=0.00028 Score=64.93 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=34.6
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHH
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA 196 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~A 196 (223)
..++||+|||.|.++..++...+.+|+.|||++.|+..+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~ 160 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF 160 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 468999999999999997777677899999999999764
No 66
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.35 E-value=0.00024 Score=59.05 Aligned_cols=45 Identities=27% Similarity=0.214 Sum_probs=39.0
Q ss_pred ceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|.++..++... ..+|..||+++.+++.+++++..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 98 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD 98 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc
Confidence 3689999999999999976655 48999999999999999998743
No 67
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.35 E-value=0.00021 Score=62.02 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=34.8
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
..+|||+|||-||-|..|..+.| .|++||.++.-++.+.+..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a 72 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLA 72 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHH
Confidence 35899999999999999666667 8999999999999887654
No 68
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.35 E-value=0.00035 Score=64.77 Aligned_cols=43 Identities=28% Similarity=0.183 Sum_probs=39.2
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||++||+|.+|.. |++.+.+|+.||.++.+++.|++++..
T Consensus 208 ~~vLDl~~G~G~~sl~-la~~~~~v~~vE~~~~ai~~a~~N~~~ 250 (362)
T PRK05031 208 GDLLELYCGNGNFTLA-LARNFRRVLATEISKPSVAAAQYNIAA 250 (362)
T ss_pred CeEEEEeccccHHHHH-HHhhCCEEEEEECCHHHHHHHHHHHHH
Confidence 4699999999999996 788899999999999999999998754
No 69
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.33 E-value=0.00037 Score=61.30 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=39.9
Q ss_pred CcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
....+|||+|||+|.+|.. |++++++++++|-++.=++.|++.+++
T Consensus 42 ~ry~~alEvGCs~G~lT~~-LA~rCd~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTER-LAPRCDRLLAVDISPRALARARERLAG 87 (201)
T ss_dssp SSEEEEEEE--TTSHHHHH-HGGGEEEEEEEES-HHHHHHHHHHTTT
T ss_pred cccceeEecCCCccHHHHH-HHHhhCceEEEeCCHHHHHHHHHhcCC
Confidence 3567899999999999999 899999999999999999999999976
No 70
>PLN02244 tocopherol O-methyltransferase
Probab=97.33 E-value=0.00026 Score=64.87 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=38.1
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||+|.++..|......+|+.||.++.|++.|++....
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~ 163 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAA 163 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh
Confidence 4468999999999999885444446999999999999999887643
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.31 E-value=0.00044 Score=57.82 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=37.6
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|.++..+... ..+|+.+|+++.+++.+++++..
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~ 89 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKK 89 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHH
Confidence 468999999999999986554 45799999999999999987744
No 72
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.28 E-value=0.0005 Score=63.11 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=39.1
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
..++||+|||-|=+|++ |+++...|+.+|+++.|+++|++..
T Consensus 90 g~~ilDvGCGgGLLSep-LArlga~V~GID~s~~~V~vA~~h~ 131 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEP-LARLGAQVTGIDASDDMVEVANEHK 131 (282)
T ss_pred CceEEEeccCccccchh-hHhhCCeeEeecccHHHHHHHHHhh
Confidence 35699999999999999 8999999999999999999999974
No 73
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.28 E-value=0.00055 Score=60.63 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=52.7
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhC
Q 027421 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 123 MLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
+|+|..+.+..|-..-...|..+..-.. ....+||++|||.|.++..+|... +.+|++||.++.+++.+++++.
T Consensus 43 ~ldg~~q~~~~~e~~y~e~l~~~~l~~~-----~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~ 117 (270)
T TIGR00417 43 VLDGVVQTTERDEFIYHEMIAHVPLFTH-----PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLP 117 (270)
T ss_pred EECCcccccCchHHHHHHHhhhhHhhcC-----CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhH
Confidence 3566556666553333444554432111 122489999999999999977665 6899999999999999999874
Q ss_pred c
Q 027421 202 P 202 (223)
Q Consensus 202 ~ 202 (223)
.
T Consensus 118 ~ 118 (270)
T TIGR00417 118 S 118 (270)
T ss_pred h
Confidence 3
No 74
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.26 E-value=0.00039 Score=64.22 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=37.4
Q ss_pred ceeeeccCCCcccccHHHHhhcCC---eeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~---~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||+|.+|.. |++.+. +|..||.++.|++.|++++..
T Consensus 81 g~~VLDIG~GtG~~a~~-LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~ 127 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAV-MSRVVGEKGLVVSVEYSRKICEIAKRNVRR 127 (322)
T ss_pred CCEEEEEeCCccHHHHH-HHHhcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 46899999999999988 455553 599999999999999998754
No 75
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.25 E-value=0.001 Score=54.74 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=38.9
Q ss_pred cceeeeccCCCcccccHHHHhhcCC--eeEEecCcHHHHHHHHHhhC
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~--~VDlVEP~e~Fle~Ake~l~ 201 (223)
+..++||+|||.|.++..++..... +|+.+|+++.+++.+++.+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 3468999999999999997766653 89999999999999988764
No 76
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.25 E-value=0.00028 Score=65.34 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=38.8
Q ss_pred eeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
++||++||+|.+|.. |++.+.+|+.||.++.+++.|++++..
T Consensus 200 ~vlDl~~G~G~~sl~-la~~~~~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 200 DLLELYCGNGNFSLA-LAQNFRRVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred cEEEEeccccHHHHH-HHHhCCEEEEEECCHHHHHHHHHHHHH
Confidence 699999999999996 788889999999999999999999755
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=97.21 E-value=0.0007 Score=54.59 Aligned_cols=44 Identities=14% Similarity=0.035 Sum_probs=38.3
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|.++..++.. ..+|..+|.++.+++.+++++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~ 67 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKL 67 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHH
Confidence 358999999999999996555 78999999999999999888743
No 78
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.20 E-value=0.00056 Score=62.58 Aligned_cols=40 Identities=25% Similarity=0.169 Sum_probs=34.6
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHH
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ak 197 (223)
..+|||+|||.|..+..++......|..|||++.|+..++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~ 162 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFE 162 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 3589999999999999976666778999999999998654
No 79
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0011 Score=58.24 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=41.4
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
....|||.|||.|+++...++-....|..||+.+..++.++++..+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh
Confidence 3457999999999999998888889999999999999999999854
No 80
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.19 E-value=0.00039 Score=62.76 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=39.6
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...++||+|||.|-++.+ |++.-..|+.+|.+++.+++|+....+
T Consensus 59 ~g~~vLDvGCGgG~Lse~-mAr~Ga~VtgiD~se~~I~~Ak~ha~e 103 (243)
T COG2227 59 PGLRVLDVGCGGGILSEP-LARLGASVTGIDASEKPIEVAKLHALE 103 (243)
T ss_pred CCCeEEEecCCccHhhHH-HHHCCCeeEEecCChHHHHHHHHhhhh
Confidence 346899999999999999 788778999999999999999976433
No 81
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.19 E-value=0.00059 Score=56.51 Aligned_cols=43 Identities=33% Similarity=0.459 Sum_probs=36.0
Q ss_pred eeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhC
Q 027421 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~ 201 (223)
.++||+|||.|.++..++.... .+|+.+|+++.|++.+++.+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence 5899999999999998655432 468999999999999998763
No 82
>PHA01634 hypothetical protein
Probab=97.19 E-value=0.00048 Score=58.02 Aligned_cols=44 Identities=18% Similarity=0.018 Sum_probs=41.3
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+++||||+||--+..|+++.+++|-++||+++..+.+++++.-
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 58999999999999999999999999999999999999998744
No 83
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.15 E-value=0.00087 Score=63.42 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=40.1
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||||||+|-++...+.....+|+.||.++.+++.|++++..
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~ 265 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL 265 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 58999999999999987777778999999999999999999855
No 84
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.14 E-value=0.00072 Score=50.77 Aligned_cols=44 Identities=25% Similarity=0.194 Sum_probs=38.9
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||.|||.|+++..++.....+|..||-++..++.|+.++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH
Confidence 48999999999999997666448999999999999999998755
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=97.14 E-value=0.00087 Score=57.26 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=37.3
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
..++||+|||.|.++..+....+.+|+.||.++.+++.+++++.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~ 80 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNAL 80 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH
Confidence 46899999999999988544345699999999999999998764
No 86
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.14 E-value=0.00096 Score=58.86 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=44.6
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 137 ~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
-.+..++.+.. .....|||+|+|.|.+|..| ++.+++|.+||..+.|++.+++.+.
T Consensus 18 ~~~~Iv~~~~~--------~~~~~VlEiGpG~G~lT~~L-~~~~~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 18 IADKIVDALDL--------SEGDTVLEIGPGPGALTREL-LKRGKRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp HHHHHHHHHTC--------GTTSEEEEESSTTSCCHHHH-HHHSSEEEEEESSHHHHHHHHHHCT
T ss_pred HHHHHHHhcCC--------CCCCEEEEeCCCCccchhhH-hcccCcceeecCcHhHHHHHHHHhh
Confidence 34555555543 24468999999999999995 4556999999999999999999774
No 87
>PRK04266 fibrillarin; Provisional
Probab=97.09 E-value=0.00067 Score=59.44 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=36.6
Q ss_pred cceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhC
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~ 201 (223)
+..++||+|||+|.+|.. |+..+ .+|.+||.++.|++.+.+...
T Consensus 72 ~g~~VlD~G~G~G~~~~~-la~~v~~g~V~avD~~~~ml~~l~~~a~ 117 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSH-VSDIVEEGVVYAVEFAPRPMRELLEVAE 117 (226)
T ss_pred CCCEEEEEccCCCHHHHH-HHHhcCCCeEEEEECCHHHHHHHHHHhh
Confidence 446899999999999988 56665 489999999999997766653
No 88
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.09 E-value=0.00065 Score=56.64 Aligned_cols=40 Identities=20% Similarity=-0.046 Sum_probs=33.9
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHH
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake 198 (223)
.++||+|||.|.++..+.......|..||+++.|++.+++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH
Confidence 4799999999999988554555578999999999998875
No 89
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.05 E-value=0.00078 Score=46.41 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=34.6
Q ss_pred eeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHH
Q 027421 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake 198 (223)
++||+|||.|.++..++.....++..+|+++.+++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 39 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK 39 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 489999999999999776567899999999999998884
No 90
>PRK08317 hypothetical protein; Provisional
Probab=97.04 E-value=0.0013 Score=54.25 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=36.4
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~ 199 (223)
+..++||+|||.|.++..+...+ ..+|..+|+++.+++.+++.
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 34689999999999999965443 25899999999999999887
No 91
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.04 E-value=0.00093 Score=58.27 Aligned_cols=45 Identities=24% Similarity=0.084 Sum_probs=36.4
Q ss_pred cceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhC
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~ 201 (223)
+..++||+|||.|..+..++.... .+|..||+++.|++.|+++..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~ 123 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR 123 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH
Confidence 446999999999998876444332 369999999999999998753
No 92
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.02 E-value=0.00081 Score=56.90 Aligned_cols=44 Identities=30% Similarity=0.306 Sum_probs=37.2
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..++... -.+|..+|.++.+++.|++++..
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 489999999999999965543 34899999999999999988743
No 93
>PLN02366 spermidine synthase
Probab=97.01 E-value=0.0014 Score=60.18 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=55.9
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhC
Q 027421 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 123 MLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
+|.|...++..|-..-...|.++..... ....+||++|+|.|-+...++..- ..+||+||.++.+++.+++++.
T Consensus 62 ~lDg~~q~~~~de~~Y~e~l~h~~l~~~-----~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~ 136 (308)
T PLN02366 62 VLDGVIQLTERDECAYQEMITHLPLCSI-----PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFP 136 (308)
T ss_pred EECCEeeecCccHHHHHHHHHHHHHhhC-----CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhh
Confidence 5666667788884444666666543211 234689999999999999976542 5799999999999999999985
Q ss_pred c
Q 027421 202 P 202 (223)
Q Consensus 202 ~ 202 (223)
.
T Consensus 137 ~ 137 (308)
T PLN02366 137 D 137 (308)
T ss_pred h
Confidence 4
No 94
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.01 E-value=0.0012 Score=57.33 Aligned_cols=39 Identities=10% Similarity=-0.235 Sum_probs=33.5
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHH
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake 198 (223)
.+|||.|||.||.+..| +..--+|+.||.|+..++.+..
T Consensus 36 ~rvLd~GCG~G~da~~L-A~~G~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWL-AEQGHRVLGVELSEIAVEQFFA 74 (213)
T ss_pred CeEEEeCCCchhHHHHH-HhCCCeEEEEeCCHHHHHHHHH
Confidence 58999999999999995 5555589999999999998643
No 95
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.00 E-value=0.0014 Score=61.52 Aligned_cols=45 Identities=22% Similarity=0.178 Sum_probs=37.8
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
+..++||+|||.|.++..+....-.+|+.||.++.+++.|++.+.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence 346899999999999988554444589999999999999998774
No 96
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.96 E-value=0.0019 Score=61.13 Aligned_cols=45 Identities=20% Similarity=0.102 Sum_probs=38.6
Q ss_pred ceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||+|..|..++... -.+|++||.++.+++.+++++..
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4589999999999999966543 36999999999999999998754
No 97
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.96 E-value=0.0012 Score=58.41 Aligned_cols=43 Identities=26% Similarity=0.252 Sum_probs=35.5
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHH-HHHh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARES 199 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~-Ake~ 199 (223)
...++||+|||+|-+|..++.....+|.+||.++.|+.. ++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC
Confidence 345899999999999999776658999999999977764 5543
No 98
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.95 E-value=0.0013 Score=58.24 Aligned_cols=46 Identities=11% Similarity=-0.057 Sum_probs=38.2
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||+|..|..+...+ -.+|.+||.++.+++.+++++..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~ 118 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR 118 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 34689999999999998854433 24899999999999999999855
No 99
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.93 E-value=0.00087 Score=60.34 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=36.2
Q ss_pred CcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+..++||+|||-|.++..+..++-.+|+.|.-|+...+.+++.+..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~ 107 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIRE 107 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHh
Confidence 35579999999999999996655456999999999999999988755
No 100
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.93 E-value=0.0012 Score=56.16 Aligned_cols=45 Identities=24% Similarity=0.103 Sum_probs=41.0
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||++||.|.++..++.+...+|++||-++.-++.+++++..
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~ 94 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLAL 94 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 358999999999999998888888999999999999999998744
No 101
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.84 E-value=0.0019 Score=56.26 Aligned_cols=47 Identities=21% Similarity=0.148 Sum_probs=39.6
Q ss_pred CcceeeeccCCCcccccHHHHh-hcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl-~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+..+.+|+|||.|.||....+ .-..+|.++|-.+..++..+.|+..
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~ 80 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAAR 80 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 3557999999999999999651 2357999999999999999988755
No 102
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.83 E-value=0.0025 Score=60.29 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=38.0
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||+|..|..+.... -.+|.++|.++.+++.+++++..
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 34689999999999999854432 24899999999999999998754
No 103
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.81 E-value=0.0016 Score=60.69 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=38.2
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||+|.+|..+. ....+|..||-++..++.|++++..
T Consensus 235 ~~vLDL~cG~G~~~l~la-~~~~~v~~vE~~~~av~~a~~N~~~ 277 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA-GPDTQLTGIEIESEAIACAQQSAQM 277 (374)
T ss_pred CEEEEccCCccHHHHHHh-hcCCeEEEEECCHHHHHHHHHHHHH
Confidence 589999999999999965 5568999999999999999998744
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.79 E-value=0.0013 Score=56.80 Aligned_cols=44 Identities=30% Similarity=0.302 Sum_probs=37.9
Q ss_pred ceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
..++||+|||.|.++..++... -.+|..+|.++.+++.|++++.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4589999999999999965443 2689999999999999999875
No 105
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.77 E-value=0.0024 Score=64.21 Aligned_cols=59 Identities=10% Similarity=0.069 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 134 Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
|....+.++..+.. ..++||||||+|.+|..++.....+|+.||.++.+++.|++++..
T Consensus 525 Dqr~~R~~~~~~~~----------g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ 583 (702)
T PRK11783 525 DHRPTRRMIGQMAK----------GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL 583 (702)
T ss_pred HHHHHHHHHHHhcC----------CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 33345566665433 258999999999999997776678999999999999999999854
No 106
>PRK03612 spermidine synthase; Provisional
Probab=96.77 E-value=0.0028 Score=61.64 Aligned_cols=73 Identities=19% Similarity=0.053 Sum_probs=50.9
Q ss_pred ccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHh
Q 027421 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 122 GMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~ 199 (223)
=+|.|-.+.+..|-.....+|........ .+..+|||+|+|.|-++..++..-. ++|++||.++.+++.++++
T Consensus 267 L~ldG~~q~s~~de~~y~e~l~~~~l~~~-----~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~ 340 (521)
T PRK03612 267 LYLNGRLQFSSRDEYRYHEALVHPAMAAS-----ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS 340 (521)
T ss_pred EEECCEeeccCccHHHHHHHHHHHHHhhC-----CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC
Confidence 35667556677774333444444221111 2346899999999999999775433 7999999999999999993
No 107
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.75 E-value=0.0016 Score=59.23 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=36.2
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHh
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~ 199 (223)
..++|+|||.| -|--.++.+|++|.++|+++.||+.|++.
T Consensus 35 ~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 35 RLAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKH 74 (261)
T ss_pred ceEEEeccCCC-cchHHHHHhhhhheeecCCHHHHHHhhcC
Confidence 38999999999 66666999999999999999999999874
No 108
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0032 Score=55.66 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=50.9
Q ss_pred CcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 128 GNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 128 ~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..||.+++.. .++..|.. .+..+||++|||+|=-| -+|++++.+|.-||-.+.+.+.|+++|..
T Consensus 53 qtis~P~~vA--~m~~~L~~--------~~g~~VLEIGtGsGY~a-Avla~l~~~V~siEr~~~L~~~A~~~L~~ 116 (209)
T COG2518 53 QTISAPHMVA--RMLQLLEL--------KPGDRVLEIGTGSGYQA-AVLARLVGRVVSIERIEELAEQARRNLET 116 (209)
T ss_pred ceecCcHHHH--HHHHHhCC--------CCCCeEEEECCCchHHH-HHHHHHhCeEEEEEEcHHHHHHHHHHHHH
Confidence 4577777543 33444433 34579999999999988 66999999999999999999999999865
No 109
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.72 E-value=0.0037 Score=59.02 Aligned_cols=46 Identities=24% Similarity=0.167 Sum_probs=38.5
Q ss_pred cceeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||+|..|..++...- .+|+++|.++.+++.+++++..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~ 290 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR 290 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 346899999999999999655432 4999999999999999998744
No 110
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.72 E-value=0.0015 Score=58.57 Aligned_cols=44 Identities=23% Similarity=0.204 Sum_probs=37.3
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..+.... -.+|+.||.++.+++.|++++..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~ 167 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER 167 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 589999999999999955432 24899999999999999998754
No 111
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.71 E-value=0.0018 Score=60.47 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=36.3
Q ss_pred ceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhh
Q 027421 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l 200 (223)
..++||+|||.|.++..++... ..+|+.||+++.|++.|+++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~ 157 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh
Confidence 4689999999999998865432 358999999999999999865
No 112
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0023 Score=58.05 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=39.2
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
...+|++|+|+|-+|.. |++..+.|++||-.+.|++.+++.++
T Consensus 31 ~d~VlEIGpG~GaLT~~-Ll~~~~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 31 GDNVLEIGPGLGALTEP-LLERAARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCeEEEECCCCCHHHHH-HHhhcCeEEEEEeCHHHHHHHHHhcc
Confidence 57899999999999999 56778899999999999999999874
No 113
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.71 E-value=0.0017 Score=56.55 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=37.3
Q ss_pred cceeeeccCCCcccccHHHHhhcCC---eeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~---~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|+|.|=.| -+|+.++. .|..||..+.+++.|++++..
T Consensus 72 pg~~VLeIGtGsGY~a-Alla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~ 119 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQA-ALLAHLVGPVGRVVSVERDPELAERARRNLAR 119 (209)
T ss_dssp TT-EEEEES-TTSHHH-HHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCcHHH-HHHHHhcCccceEEEECccHHHHHHHHHHHHH
Confidence 4579999999999999 55888865 478999999999999999865
No 114
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.68 E-value=0.0042 Score=59.11 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=38.6
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..+|||+|||+|..|.+++... -.+|+++|.++++++.+++++..
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 34689999999999999955433 35899999999999999998754
No 115
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.67 E-value=0.0032 Score=54.80 Aligned_cols=39 Identities=15% Similarity=-0.246 Sum_probs=33.3
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHH
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ak 197 (223)
..+|||.|||.||.+..|.. .--+|+.||+|+.-++.+.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE-QGHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh-CCCeEEEEccCHHHHHHHH
Confidence 35899999999999999554 4448999999999999764
No 116
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.66 E-value=0.004 Score=57.67 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=37.7
Q ss_pred eeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+||.=||+|.+|.+ |++.+++|..||-++..++.|++++..
T Consensus 199 ~vlDlycG~G~fsl~-la~~~~~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLP-LAKKAKKVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp EEEEES-TTTCCHHH-HHCCSSEEEEEES-HHHHHHHHHHHHH
T ss_pred cEEEEeecCCHHHHH-HHhhCCeEEEeeCCHHHHHHHHHHHHH
Confidence 699999999999999 799999999999999999999999755
No 117
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.66 E-value=0.0022 Score=56.51 Aligned_cols=43 Identities=21% Similarity=0.093 Sum_probs=35.0
Q ss_pred ceeeeccCCCcccccHHHHhhcC----CeeEEecCcHHHHHHHHHhh
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f----~~VDlVEP~e~Fle~Ake~l 200 (223)
..++||+|||.|.++..|....- .+|..||+++.+++.|++..
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~ 132 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY 132 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC
Confidence 35799999999999998544321 26899999999999998764
No 118
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.64 E-value=0.002 Score=57.41 Aligned_cols=44 Identities=30% Similarity=0.320 Sum_probs=37.3
Q ss_pred eeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..+....- .+|++||.++..++.|++++..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~ 160 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK 160 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 5899999999999999554432 4899999999999999998754
No 119
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.60 E-value=0.002 Score=56.92 Aligned_cols=44 Identities=25% Similarity=0.230 Sum_probs=37.1
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..+.... ..+|++||.++.+++.|++++..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 489999999999999955432 23899999999999999998744
No 120
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.60 E-value=0.0034 Score=59.88 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=43.1
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 137 ~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.-..|+..+... ....+||+|||.|+++.. |+... ..|..||.++.+++.|.+.+..
T Consensus 110 d~~~~~~~~~~~--------~~p~vLEIGcGsG~~ll~-lA~~~P~~~~iGIEI~~~~i~~a~~ka~~ 168 (390)
T PRK14121 110 DIDNFLDFISKN--------QEKILIEIGFGSGRHLLY-QAKNNPNKLFIGIEIHTPSIEQVLKQIEL 168 (390)
T ss_pred CHHHHHHHhcCC--------CCCeEEEEcCcccHHHHH-HHHhCCCCCEEEEECCHHHHHHHHHHHHH
Confidence 334566665541 234799999999999999 45543 5899999999999999887644
No 121
>PHA03411 putative methyltransferase; Provisional
Probab=96.59 E-value=0.0026 Score=58.42 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=36.5
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhh
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l 200 (223)
.++||+|||.|.++..++... ..+|..||.++.|++.+++++
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence 589999999999999865543 369999999999999999875
No 122
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.57 E-value=0.003 Score=53.06 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=35.9
Q ss_pred eeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
++||+|||.|..+..+.... -.+|+.+|.++.+++.+++.+..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~ 45 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRA 45 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 69999999999999865443 14899999999999999987643
No 123
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.51 E-value=0.0046 Score=58.25 Aligned_cols=44 Identities=25% Similarity=0.232 Sum_probs=37.8
Q ss_pred ceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..+|||+|||+|-.|..++ ... .+|.++|.++.+++.+++++..
T Consensus 239 g~~VLDlcag~G~kt~~la-~~~~~~~v~a~D~~~~~l~~~~~n~~r 284 (426)
T TIGR00563 239 EETILDACAAPGGKTTHIL-ELAPQAQVVALDIHEHRLKRVYENLKR 284 (426)
T ss_pred CCeEEEeCCCccHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4689999999999999854 444 5999999999999999998854
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.51 E-value=0.0036 Score=59.35 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=37.3
Q ss_pred ceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||+|..|..+.... ..+|+.||.++.+++.+++++..
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~ 297 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA 297 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH
Confidence 4689999999999998754322 35899999999999999998754
No 125
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.35 E-value=0.006 Score=56.10 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=40.1
Q ss_pred CcceeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+..++||+|||-|-.+.. +++.+ .+|+-|.-|+...+.+++.+..
T Consensus 71 ~~G~~lLDiGCGWG~l~~~-aA~~y~v~V~GvTlS~~Q~~~~~~r~~~ 117 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIY-AAEEYGVTVVGVTLSEEQLAYAEKRIAA 117 (283)
T ss_pred CCCCEEEEeCCChhHHHHH-HHHHcCCEEEEeeCCHHHHHHHHHHHHH
Confidence 3457999999999999999 66666 8999999999999999997755
No 126
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.34 E-value=0.0037 Score=57.01 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=37.7
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..+.... -.+|++||.++.+++.|++++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~ 179 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER 179 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 479999999999999965443 25899999999999999998754
No 127
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.31 E-value=0.0052 Score=56.38 Aligned_cols=45 Identities=22% Similarity=0.146 Sum_probs=38.8
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|-++.--+.-...+|.++|-.+.=++.|++|...
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH
Confidence 358999999999999986666678999999999999999999755
No 128
>PRK04457 spermidine synthase; Provisional
Probab=96.31 E-value=0.0047 Score=54.96 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=37.8
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|+|.|.++..++... -.+|++||.++.+++.|++++..
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~ 112 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL 112 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC
Confidence 579999999999999865543 25899999999999999999854
No 129
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.29 E-value=0.006 Score=55.28 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=37.5
Q ss_pred cceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l 200 (223)
...++.|+|||+|--|+- |.+.| ..|+-+|-|+.|+++|++.+
T Consensus 30 ~~~~v~DLGCGpGnsTel-L~~RwP~A~i~GiDsS~~Mla~Aa~rl 74 (257)
T COG4106 30 RPRRVVDLGCGPGNSTEL-LARRWPDAVITGIDSSPAMLAKAAQRL 74 (257)
T ss_pred ccceeeecCCCCCHHHHH-HHHhCCCCeEeeccCCHHHHHHHHHhC
Confidence 446899999999999977 66665 79999999999999998876
No 130
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.27 E-value=0.0042 Score=59.94 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=37.7
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+|||.|.++..+.... ..+|+.||.++.+++.|++++..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~ 297 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD 297 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 489999999999999865443 46899999999999999998744
No 131
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.22 E-value=0.0052 Score=59.72 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=38.4
Q ss_pred ceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|.++..++... -.+|++||.++.+++.|++++..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~ 184 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK 184 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3589999999999999866553 35899999999999999998744
No 132
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.22 E-value=0.012 Score=53.49 Aligned_cols=45 Identities=18% Similarity=-0.052 Sum_probs=38.4
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||.|||+|.++... +....+|..+|.++.|++.+++++..
T Consensus 182 ~g~~vLDp~cGtG~~liea-a~~~~~v~g~Di~~~~~~~a~~nl~~ 226 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEA-GLMGAKVIGCDIDWKMVAGARINLEH 226 (329)
T ss_pred CcCEEEECCCCCCHHHHHH-HHhCCeEEEEcCCHHHHHHHHHHHHH
Confidence 3468999999999999884 45577999999999999999988744
No 133
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.21 E-value=0.003 Score=52.44 Aligned_cols=36 Identities=14% Similarity=0.009 Sum_probs=28.8
Q ss_pred cceeeeccCCCcccccHHHHhhcCC--eeEEecCcHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHF 192 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~--~VDlVEP~e~F 192 (223)
+..++||+|||+|.+|..+...... +|.+||+++.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 4568999999999999986554433 69999999854
No 134
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.0052 Score=55.51 Aligned_cols=42 Identities=31% Similarity=0.284 Sum_probs=37.4
Q ss_pred eeeccCCCcccccHHHHhhcCC--eeEEecCcHHHHHHHHHhhCc
Q 027421 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~--~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+|||+|+|.|-++..+. ..+. .|+++|-|+.=++.|++|...
T Consensus 113 ~ilDlGTGSG~iai~la-~~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 113 RILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cEEEecCChHHHHHHHH-hhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999954 5454 999999999999999999855
No 135
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.96 E-value=0.0096 Score=53.10 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=36.6
Q ss_pred cceeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+|||.|.++..++...- -+|+++|. +.+++.+++++..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~ 194 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE 194 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh
Confidence 346899999999999999665542 47999996 7899999988754
No 136
>PRK01581 speE spermidine synthase; Validated
Probab=95.95 E-value=0.02 Score=54.59 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=50.8
Q ss_pred ccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHH
Q 027421 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 122 GMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake 198 (223)
=+|.|....+..|-.--...|-....... ....+||++|+|.|-+...+|..- ..+|++||-++.+++.|++
T Consensus 120 L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h-----~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 120 LYLDKQLQFSSVDEQIYHEALVHPIMSKV-----IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred EEECCeeccccccHHHHHHHHHHHHHHhC-----CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 36777777888884333333433221111 233589999999999888876542 4899999999999999997
No 137
>PRK06922 hypothetical protein; Provisional
Probab=95.91 E-value=0.0081 Score=61.00 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=36.0
Q ss_pred ceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~ 201 (223)
..++||+|||.|.++..+ +..+ .+|..+|.++.|++.|++.+.
T Consensus 419 g~rVLDIGCGTG~ls~~L-A~~~P~~kVtGIDIS~~MLe~Ararl~ 463 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMI-EEETEDKRIYGIDISENVIDTLKKKKQ 463 (677)
T ss_pred CCEEEEeCCCCCHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence 368999999999999774 4434 499999999999999998753
No 138
>PTZ00146 fibrillarin; Provisional
Probab=95.90 E-value=0.014 Score=53.91 Aligned_cols=39 Identities=13% Similarity=-0.018 Sum_probs=30.9
Q ss_pred cceeeeccCCCcccccHHHHhhcC---CeeEEecCcHHHHHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAA 196 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f---~~VDlVEP~e~Fle~A 196 (223)
+..+|||+|||+|..|.+ |+.++ ..|-+||.++.+++.+
T Consensus 132 pG~~VLDLGaG~G~~t~~-lAdiVG~~G~VyAVD~s~r~~~dL 173 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSH-VSDLVGPEGVVYAVEFSHRSGRDL 173 (293)
T ss_pred CCCEEEEeCCcCCHHHHH-HHHHhCCCCEEEEEECcHHHHHHH
Confidence 346899999999999999 55655 5899999998755433
No 139
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.017 Score=53.50 Aligned_cols=67 Identities=22% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 127 FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 127 f~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
|+.=+-.--.-+-.+|+.+.. +..++||+|||.|=+++--+.-....|-.+|-.+.=++.|++|...
T Consensus 141 FGTG~HpTT~lcL~~Le~~~~---------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~ 207 (300)
T COG2264 141 FGTGTHPTTSLCLEALEKLLK---------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL 207 (300)
T ss_pred cCCCCChhHHHHHHHHHHhhc---------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH
Confidence 554433333455666766544 2368999999999999997666688899999999999999999755
No 140
>PLN02823 spermine synthase
Probab=95.61 E-value=0.027 Score=52.54 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=58.0
Q ss_pred hhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc-CCeeEEecC
Q 027421 110 ISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEP 188 (223)
Q Consensus 110 ~~YWe~veaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP 188 (223)
...+++..-..-=+|.|..+.+..|-..=..+|..+..... ....+||-+|+|.|.++..+|... ..+|++||.
T Consensus 61 I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~-----~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEi 135 (336)
T PLN02823 61 IALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHH-----PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDI 135 (336)
T ss_pred EEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhC-----CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEEC
Confidence 34444433223346677666666663322334443322111 123589999999999999987743 689999999
Q ss_pred cHHHHHHHHHhhCc
Q 027421 189 VSHFLDAARESLAP 202 (223)
Q Consensus 189 ~e~Fle~Ake~l~~ 202 (223)
++..++.|++++..
T Consensus 136 D~~vv~lar~~~~~ 149 (336)
T PLN02823 136 DQEVVDFCRKHLTV 149 (336)
T ss_pred CHHHHHHHHHhccc
Confidence 99999999999854
No 141
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.59 E-value=0.0092 Score=51.28 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=27.0
Q ss_pred ceeeeccCCCcccccHHHHhhcC--CeeEEecCcH
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVS 190 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e 190 (223)
..++||+|||+|.+|..++.... .+|.+||+++
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 45899999999999988655432 5899999986
No 142
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=95.54 E-value=0.014 Score=52.68 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=35.9
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.-+|++|||+|+-=+..=-.--..|+.+||+++|-+-|.+.+++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhh
Confidence 46899999999988763222456999999999999999887766
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=95.51 E-value=0.012 Score=53.14 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=35.6
Q ss_pred eeeeccCCCcccccHHHHhhc----CCeeEEecCcHHHHHHHHHhh
Q 027421 159 LVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~----f~~VDlVEP~e~Fle~Ake~l 200 (223)
.+|||+|||+|.++..+...+ -.+|++||-++.+++.|++++
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~ 96 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV 96 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence 589999999999998754432 348999999999999999876
No 144
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.51 E-value=0.025 Score=49.53 Aligned_cols=58 Identities=14% Similarity=0.089 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 138 Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.-.||..|... .+..++||+|+|+|--|..+.... -.+|+.+|.++.+++.|++++..
T Consensus 56 ~g~~L~~l~~~-------~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~ 115 (234)
T PLN02781 56 EGLFLSMLVKI-------MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK 115 (234)
T ss_pred HHHHHHHHHHH-------hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 35666665442 223589999999999877754433 35999999999999999999865
No 145
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.47 E-value=0.021 Score=48.59 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=38.9
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...++||+=||.|-++...|++.+++|++||.+..-+..+++++..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~ 87 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEK 87 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999999999998855
No 146
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.40 E-value=0.026 Score=52.57 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=41.1
Q ss_pred CcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++..+|+||.|+|-+|.- |+...++|-++|-.+.|+.++.+...+
T Consensus 57 k~tD~VLEvGPGTGnLT~~-lLe~~kkVvA~E~Dprmvael~krv~g 102 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVK-LLEAGKKVVAVEIDPRMVAELEKRVQG 102 (315)
T ss_pred CCCCEEEEeCCCCCHHHHH-HHHhcCeEEEEecCcHHHHHHHHHhcC
Confidence 4667999999999999998 556688999999999999999998766
No 147
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.38 E-value=0.013 Score=53.67 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=38.8
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~ 199 (223)
.+.++||+|||+|=.+.. |-.+.++.+=||-|+.|+++|.+.
T Consensus 125 ~F~~~lDLGCGTGL~G~~-lR~~a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEA-LRDMADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred ccceeeecccCcCcccHh-HHHHHhhccCCchhHHHHHHHHhc
Confidence 478999999999999988 889999999999999999999873
No 148
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.23 E-value=0.027 Score=47.87 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=35.5
Q ss_pred eeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++|+-||+|--|+. +++.|++|.+||-++.-++.|+.+..-
T Consensus 2 ~vlD~fcG~GGNtIq-FA~~~~~Viaidid~~~~~~a~hNa~v 43 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQ-FARTFDRVIAIDIDPERLECAKHNAEV 43 (163)
T ss_dssp EEEETT-TTSHHHHH-HHHTT-EEEEEES-HHHHHHHHHHHHH
T ss_pred EEEEeccCcCHHHHH-HHHhCCeEEEEECCHHHHHHHHHHHHH
Confidence 589999999999999 678899999999999999999988643
No 149
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.91 E-value=0.023 Score=50.94 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhh---cCCeeEEecCcHHHHHHHHHhhCc
Q 027421 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 139 r~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~---~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...|.+|.... +. -...++||+|||+|..+--+ .. ...+|.+||+|+.|++.++.-+..
T Consensus 19 ~~vl~El~~r~-p~---f~P~~vLD~GsGpGta~wAa-~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 19 YRVLSELRKRL-PD---FRPRSVLDFGSGPGTALWAA-REVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHHhC-cC---CCCceEEEecCChHHHHHHH-HHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 45566665532 11 13358999999999876542 22 467999999999999988876544
No 150
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.90 E-value=0.014 Score=53.03 Aligned_cols=75 Identities=25% Similarity=0.331 Sum_probs=54.4
Q ss_pred ccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHH
Q 027421 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA 196 (223)
Q Consensus 117 eaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~A 196 (223)
..++||||| ++.+-- -.-.+|-+-|.+++. .. .....+.||+|||-|-||+. +++.|++|-+-|-|..|.+.+
T Consensus 78 ~TdING~lg-rGsMFi---fSe~QF~klL~i~~p-~w-~~~~~~lLDlGAGdGeit~~-m~p~feevyATElS~tMr~rL 150 (288)
T KOG3987|consen 78 QTDINGFLG-RGSMFI---FSEEQFRKLLVIGGP-AW-GQEPVTLLDLGAGDGEITLR-MAPTFEEVYATELSWTMRDRL 150 (288)
T ss_pred hhccccccc-cCceEE---ecHHHHHHHHhcCCC-cc-CCCCeeEEeccCCCcchhhh-hcchHHHHHHHHhhHHHHHHH
Confidence 357899996 343211 122455555666532 11 23456999999999999999 899999999999999999988
Q ss_pred HH
Q 027421 197 RE 198 (223)
Q Consensus 197 ke 198 (223)
+.
T Consensus 151 ~k 152 (288)
T KOG3987|consen 151 KK 152 (288)
T ss_pred hh
Confidence 75
No 151
>PRK04148 hypothetical protein; Provisional
Probab=94.89 E-value=0.049 Score=45.12 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=35.7
Q ss_pred eeeeccCCCccc-ccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 159 LVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 159 ~rALDcGAGIGR-VTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
.++||+|+|.|. ++.. |...-.+|.++|-++.-++.++++.
T Consensus 18 ~kileIG~GfG~~vA~~-L~~~G~~ViaIDi~~~aV~~a~~~~ 59 (134)
T PRK04148 18 KKIVELGIGFYFKVAKK-LKESGFDVIVIDINEKAVEKAKKLG 59 (134)
T ss_pred CEEEEEEecCCHHHHHH-HHHCCCEEEEEECCHHHHHHHHHhC
Confidence 589999999995 9887 6677779999999999999998763
No 152
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=94.72 E-value=0.04 Score=49.02 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=32.9
Q ss_pred cceeeeccCCCccc----ccHHHHhhc------CCeeEEecCcHHHHHHHHHhh
Q 027421 157 QHLVALDCGSGIGR----ITKNLLIRY------FNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 157 ~~~rALDcGAGIGR----VTk~LLl~~------f~~VDlVEP~e~Fle~Ake~l 200 (223)
...+|||+|||.|- ++.-|+... --+|..+|.++.|++.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 34799999999997 444432211 138999999999999999853
No 153
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.66 E-value=0.068 Score=49.28 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=38.0
Q ss_pred ceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~ 201 (223)
...+|||+||-|..|..+|..+- .+|..+|.++.+++.|++.+.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 35899999999999999776542 589999999999999998873
No 154
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=94.55 E-value=0.042 Score=49.37 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=36.2
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+.++||++|.|.|-+|..|+--+ --+|.-.|-.+.|.+.|++++..
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH
Confidence 45799999999999998844333 25999999999999999999866
No 155
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.45 E-value=0.039 Score=49.93 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=37.8
Q ss_pred ceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||+|||.|-++.- |+..+ .+|++||-.+.+.+.|+++++-
T Consensus 45 ~~~IlDlGaG~G~l~L~-la~r~~~a~I~~VEiq~~~a~~A~~nv~l 90 (248)
T COG4123 45 KGRILDLGAGNGALGLL-LAQRTEKAKIVGVEIQEEAAEMAQRNVAL 90 (248)
T ss_pred CCeEEEecCCcCHHHHH-HhccCCCCcEEEEEeCHHHHHHHHHHHHh
Confidence 46999999999999977 55553 6999999999999999998754
No 156
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.45 E-value=0.042 Score=48.07 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=36.5
Q ss_pred ceeeeccCCCcccccHHHHhhcCC---------eeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFN---------EVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~---------~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..+++++|||-|++...+|.-+.+ ++.+||+|+.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999998765432 599999999999999999866
No 157
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.40 E-value=0.1 Score=41.87 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=38.3
Q ss_pred CcceeeeccCCCcccccHHHHh-----hcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl-----~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+..+++|+|||-|-+|..|.. ..--+|..||-++.+++.+.+....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 75 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK 75 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence 3456899999999999988655 4456999999999999988776533
No 158
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.40 E-value=0.06 Score=36.80 Aligned_cols=38 Identities=34% Similarity=0.417 Sum_probs=30.0
Q ss_pred eeccCCCcccccHHHHhhcCC---eeEEecCcHHHHHHHHHhh
Q 027421 161 ALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 161 ALDcGAGIGRVTk~LLl~~f~---~VDlVEP~e~Fle~Ake~l 200 (223)
+||+|||.|+.+ ++..... .|..+|+++.+++.++...
T Consensus 52 ~ld~~~g~g~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA--LLARLGGRGAYVVGVDLSPEMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH--HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence 999999999987 4555544 6777999999999865543
No 159
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=94.24 E-value=0.072 Score=46.30 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 139 r~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
-.||..|... .+..+||++|+++|--|..+...+ -.+|+.||+++.+.+.|++++..
T Consensus 34 g~lL~~l~~~-------~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ 92 (205)
T PF01596_consen 34 GQLLQMLVRL-------TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK 92 (205)
T ss_dssp HHHHHHHHHH-------HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh
Confidence 3567665431 123589999999999999965443 25999999999999999999854
No 160
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=94.24 E-value=0.076 Score=49.76 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=37.8
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHH---HHhh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA---RESL 200 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~A---ke~l 200 (223)
...+|||+|||.|=.+-..+....+.|..+||+..|.-.. ++++
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l 161 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL 161 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh
Confidence 3469999999999999998888899999999999998853 4555
No 161
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=94.22 E-value=0.067 Score=49.58 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=38.2
Q ss_pred cceeeeccCCCcccccHHHHhhcC-------CeeEEecCcHHHHHHHHHhh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f-------~~VDlVEP~e~Fle~Ake~l 200 (223)
...++||+++|+|=+|-.+|-..- .+|+++|.+++||.++++..
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa 150 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRA 150 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHH
Confidence 347999999999999999776653 47999999999999998875
No 162
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=94.05 E-value=0.072 Score=49.55 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=37.8
Q ss_pred cceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCcc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE 203 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~~ 203 (223)
...++||+|||.|-+..-+.... --+|+++|-++..++.|++++...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N 161 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN 161 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 34689999999998875544333 258999999999999999998663
No 163
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.95 E-value=0.082 Score=50.99 Aligned_cols=45 Identities=24% Similarity=0.238 Sum_probs=41.6
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||.=||+|.+|.+ |++.+.+|..||-++..++.|+++.+.
T Consensus 293 ~~~~vlDlYCGvG~f~l~-lA~~~~~V~gvEi~~~aV~~A~~NA~~ 337 (432)
T COG2265 293 GGERVLDLYCGVGTFGLP-LAKRVKKVHGVEISPEAVEAAQENAAA 337 (432)
T ss_pred CCCEEEEeccCCChhhhh-hcccCCEEEEEecCHHHHHHHHHHHHH
Confidence 446899999999999999 889999999999999999999999866
No 164
>PLN02672 methionine S-methyltransferase
Probab=93.93 E-value=0.052 Score=57.85 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=45.4
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhCc
Q 027421 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 137 ~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++.|++.|... +. ..-+..++||+|||.|.++..+....- .+|++||-++..++.|++|+..
T Consensus 101 eTE~lve~L~~~--~~-~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 101 WSFTFYEGLNRH--PD-SIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred hHHHHHHHHHhc--cc-ccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 466677664331 10 001235899999999999999655432 5899999999999999998743
No 165
>PLN03075 nicotianamine synthase; Provisional
Probab=93.89 E-value=0.11 Score=48.03 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=37.0
Q ss_pred ceeeeccCCCcccccHHHHh-hcCC--eeEEecCcHHHHHHHHHhhC
Q 027421 158 HLVALDCGSGIGRITKNLLI-RYFN--EVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl-~~f~--~VDlVEP~e~Fle~Ake~l~ 201 (223)
..+|||+|||.|-+|--+|+ .++. +|+-+|.++.+++.|++.+.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhh
Confidence 36899999999999877666 3443 69999999999999999884
No 166
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=93.71 E-value=0.078 Score=46.16 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=36.1
Q ss_pred ceeeeccCCCcccccHHHHh-hcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl-~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...+||.-||||-+|.++.. ...+.|-++|.++.-++.+++++..
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l 147 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL 147 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH
Confidence 46899999999999999654 2678999999999999999998755
No 167
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=93.53 E-value=0.091 Score=46.53 Aligned_cols=75 Identities=20% Similarity=0.128 Sum_probs=53.8
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhC
Q 027421 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 123 MLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~ 201 (223)
+|.|-..++..|-......|..+..... ....+||=+|.|-|..+..+|..- ..+||+||-.+..++.+++++.
T Consensus 47 ~ldg~~q~~e~de~~y~e~l~h~~~~~~-----~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~ 121 (246)
T PF01564_consen 47 VLDGDVQLSERDEFIYHEMLVHPPLLLH-----PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFP 121 (246)
T ss_dssp EETTEEEEETTTHHHHHHHHHHHHHHHS-----SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTH
T ss_pred EECCeEEEEEechHHHHHHHhhhHhhcC-----CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhch
Confidence 4666666777776555666665543211 234689999999999999966443 4899999999999999999875
Q ss_pred c
Q 027421 202 P 202 (223)
Q Consensus 202 ~ 202 (223)
.
T Consensus 122 ~ 122 (246)
T PF01564_consen 122 E 122 (246)
T ss_dssp H
T ss_pred h
Confidence 4
No 168
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=93.50 E-value=0.18 Score=44.88 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=48.8
Q ss_pred hhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 136 ~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...-.||..|... .+..++|++|.++|=-|.-++..+- .+++.+|.++.+.+.|++++++
T Consensus 45 ~e~g~~L~~L~~~-------~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ 106 (219)
T COG4122 45 PETGALLRLLARL-------SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE 106 (219)
T ss_pred hhHHHHHHHHHHh-------cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4566788877652 2346899999999999999666554 4799999999999999999976
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=93.36 E-value=0.1 Score=49.36 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=37.7
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||++||+|-++..+.... ..+|.++|-++..++.+++++..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~ 103 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL 103 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 479999999999999965442 45999999999999999998844
No 170
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=93.30 E-value=0.14 Score=40.02 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=25.4
Q ss_pred ccCCCcc--cccHHHHhh---cCCeeEEecCcHHHHHHHHHh
Q 027421 163 DCGSGIG--RITKNLLIR---YFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 163 DcGAGIG--RVTk~LLl~---~f~~VDlVEP~e~Fle~Ake~ 199 (223)
||||.+| ..+..++.. .-.+|-++||++...+.++.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 766665422 246789999999999999988
No 171
>PLN02476 O-methyltransferase
Probab=93.30 E-value=0.18 Score=46.22 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 138 Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...||..|... .+..++||+|+|+|-.|..+..-. -.+|+.+|.++.+.+.|++++..
T Consensus 106 ~g~lL~~L~~~-------~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~ 165 (278)
T PLN02476 106 QAQLLAMLVQI-------LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL 165 (278)
T ss_pred HHHHHHHHHHh-------cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 34566655442 223589999999999999854422 24799999999999999999855
No 172
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=93.21 E-value=0.1 Score=47.74 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=40.0
Q ss_pred CcceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+..||||.|.|.|-+|-.|+--+ -.+|..+|.-+.|++.|++|+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~ 141 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE 141 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH
Confidence 456899999999999998855322 35999999999999999999866
No 173
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=92.25 E-value=0.77 Score=40.75 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=61.9
Q ss_pred hhhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCc-ceeeeccCCCcccccHHHH--h
Q 027421 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQ-HLVALDCGSGIGRITKNLL--I 177 (223)
Q Consensus 101 ~k~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~-~~rALDcGAGIGRVTk~LL--l 177 (223)
.+-.-|.+-..=|+. +.| ...+++.+---.+-||+.+...... .. ..+++|+|+|.|==+.+|- -
T Consensus 22 ~~l~~Y~~lL~~wN~---~~N-----Lt~~~~~~e~~~rHilDSl~~~~~~----~~~~~~~~DIGSGaGfPGipLAI~~ 89 (215)
T COG0357 22 EKLEAYVELLLKWNK---AYN-----LTAIRDPEELWQRHILDSLVLLPYL----DGKAKRVLDIGSGAGFPGIPLAIAF 89 (215)
T ss_pred HHHHHHHHHHHHhhH---hcC-----CCCCCCHHHHHHHHHHHHhhhhhcc----cccCCEEEEeCCCCCCchhhHHHhc
Confidence 344568888888886 444 5556666545667888887653221 11 4699999999999999943 2
Q ss_pred hcCCeeEEecCcHH---HHHHHHHhhCc
Q 027421 178 RYFNEVDLLEPVSH---FLDAARESLAP 202 (223)
Q Consensus 178 ~~f~~VDlVEP~e~---Fle~Ake~l~~ 202 (223)
|- .+|++||+..+ |++.+.+.++-
T Consensus 90 p~-~~vtLles~~Kk~~FL~~~~~eL~L 116 (215)
T COG0357 90 PD-LKVTLLESLGKKIAFLREVKKELGL 116 (215)
T ss_pred cC-CcEEEEccCchHHHHHHHHHHHhCC
Confidence 33 35999999975 88888888754
No 174
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=91.72 E-value=0.23 Score=41.43 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=33.1
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...+||++|||+|-++.- ++.. ..+|.+-|..+ .++.++.++..
T Consensus 45 ~~~~VLELGaG~Gl~gi~-~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~ 90 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIA-AAKLFGAARVVLTDYNE-VLELLRRNIEL 90 (173)
T ss_dssp TTSEEEETT-TTSHHHHH-HHHT-T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred CCceEEEECCccchhHHH-HHhccCCceEEEeccch-hhHHHHHHHHh
Confidence 456999999999999887 5555 78999999988 88888888744
No 175
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=91.64 E-value=0.24 Score=43.52 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=40.0
Q ss_pred cceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..-+|+.|+|.|-+|+.+|.+.. +.+.++|-+..|...+.+...+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~ 95 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG 95 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC
Confidence 446799999999999999999876 6899999999999999876533
No 176
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=91.57 E-value=0.45 Score=43.62 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=41.3
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCcc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE 203 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~~ 203 (223)
.+||=+|-|-|..+..+|... ..+|++||-.+..++.+++++...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~ 123 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEP 123 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCc
Confidence 599999999999999988776 699999999999999999999663
No 177
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=91.29 E-value=0.39 Score=43.98 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=33.9
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHH
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake 198 (223)
..-+||||||.|=.+.-|..+. -...=||-|+.||+.|.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHH
Confidence 4679999999999997755554 678889999999999985
No 178
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=91.20 E-value=0.19 Score=46.48 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=39.2
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~ 199 (223)
.+..|+|+|||.|-|+.+|+..-+.++.++|.|..|++.++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc
Confidence 4557999999999999999999999999999999999988764
No 179
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=90.41 E-value=0.41 Score=45.49 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=37.0
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+...+||+|||.|-++.--......+|-+||-++-. +.|.+.+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~ 104 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD 104 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh
Confidence 346899999999999988777778999999988755 878776644
No 180
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=90.39 E-value=1.1 Score=38.55 Aligned_cols=86 Identities=24% Similarity=0.255 Sum_probs=52.2
Q ss_pred hhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcC-Ce
Q 027421 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NE 182 (223)
Q Consensus 104 ~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f-~~ 182 (223)
..|.+-..-|+.. +| ...+...+--..+-|+++|..-...+. ...+++|+|+|-|==+.+|-+-+= -+
T Consensus 6 ~~y~~lL~~~N~~---~N-----Lt~~~~~~~~~~~Hi~DSL~~~~~~~~---~~~~~lDiGSGaGfPGipLaI~~p~~~ 74 (184)
T PF02527_consen 6 EQYLELLLEWNKK---IN-----LTSIRDPEEIWERHILDSLALLPFLPD---FGKKVLDIGSGAGFPGIPLAIARPDLQ 74 (184)
T ss_dssp HHHHHHHHHHHHC---SS-----S-S--SHHHHHHHHHHHHHGGGGCS-C---CCSEEEEETSTTTTTHHHHHHH-TTSE
T ss_pred HHHHHHHHHhCce---ee-----eccCCCHHHHHHHHHHHHHHhhhhhcc---CCceEEecCCCCCChhHHHHHhCCCCc
Confidence 3466666666652 33 333444444456788888765322211 112799999999999988554442 37
Q ss_pred eEEecCcHH---HHHHHHHhh
Q 027421 183 VDLLEPVSH---FLDAARESL 200 (223)
Q Consensus 183 VDlVEP~e~---Fle~Ake~l 200 (223)
|+|||++.+ |++.+...+
T Consensus 75 ~~LvEs~~KK~~FL~~~~~~L 95 (184)
T PF02527_consen 75 VTLVESVGKKVAFLKEVVREL 95 (184)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHHh
Confidence 999999987 555555555
No 181
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=90.36 E-value=0.39 Score=42.21 Aligned_cols=43 Identities=19% Similarity=0.013 Sum_probs=32.6
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~ 199 (223)
+.+||||+|||-|.+=..|....--++-=||-++.-+..+.++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r 55 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR 55 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc
Confidence 3479999999999999886554444566789888877766553
No 182
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=90.28 E-value=0.63 Score=40.59 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=36.3
Q ss_pred chhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHH-hhcCCeeEEecCcHHHHHHHHHh
Q 027421 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 134 Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LL-l~~f~~VDlVEP~e~Fle~Ake~ 199 (223)
.......+|+.+.. .+...-+|+|||+|++....- ...|+++-=||-.+...+.|.+.
T Consensus 27 ~~~~~~~il~~~~l--------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~ 85 (205)
T PF08123_consen 27 SPEFVSKILDELNL--------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEEL 85 (205)
T ss_dssp HHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHH
Confidence 33455556665543 345789999999999976543 33477788899999888877653
No 183
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=89.91 E-value=0.34 Score=41.50 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=38.3
Q ss_pred eeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhCccCCCCCCCCCcceEEEc
Q 027421 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~~~~~~~~~~~kv~nf~cv 219 (223)
..||+|||-|+....+-...- ..+-.||+...-+..|...+.. ..+.|+.++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~--------~~l~Nv~~~ 72 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK--------RGLKNVRFL 72 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH--------HTTSSEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh--------hcccceEEE
Confidence 899999999999999443332 5788899999999998887655 456666554
No 184
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=89.90 E-value=0.37 Score=45.26 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=64.9
Q ss_pred ccCHHHHHHHHhccCCchhhhhhhhhhhhhhcccCC-ccchhccccCCCcccccchh-hHHHHHHHHhcCCCCCcCCCcc
Q 027421 81 FKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV-EASVDGVLGGFGNVNEVDIK-GSEAFLQMLLSDRFPNARNNQH 158 (223)
Q Consensus 81 y~sw~EmWk~e~~~d~~~~~~k~~~Y~~a~~YWe~v-eaTvdGMLGGf~~vs~~Di~-~Sr~FL~~L~~~~~~~~~~~~~ 158 (223)
-.++.++|.+.... . .--|--+..-|.+. =.+.-||| |.+.+-+ -.+..++.+..... ..+
T Consensus 87 l~~i~~~~~~R~~r------~-PlQYIlg~~~F~~l~l~~~pgVl-----IPRpETEE~V~~Vid~~~~~~~-----~~~ 149 (328)
T KOG2904|consen 87 LESIRWACLQRYKR------M-PLQYILGSQPFGDLDLVCKPGVL-----IPRPETEEWVEAVIDALNNSEH-----SKH 149 (328)
T ss_pred HHHHHHHHHHHHhc------C-ChhheeccCccCCceEEecCCee-----ecCccHHHHHHHHHHHHhhhhh-----ccc
Confidence 34556666655543 1 11144444444442 22333444 5555543 33555555544211 233
Q ss_pred eeeeccCCCcccccHHHHhhcC-CeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..+||.|||.|-++..+|..+- ..|++||-++.=+..|.+|...
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr 194 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR 194 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH
Confidence 4799999999999999887764 5899999999999999998644
No 185
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=89.33 E-value=0.49 Score=45.94 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=36.6
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
....+||+|||.|-++----....++|-+||.+ .|.+.|+..+++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~ 221 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVAS 221 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhc
Confidence 345899999999999976555568999999986 488888887655
No 186
>PRK10742 putative methyltransferase; Provisional
Probab=89.16 E-value=0.59 Score=42.54 Aligned_cols=42 Identities=24% Similarity=0.193 Sum_probs=36.3
Q ss_pred eeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
++|||=||.||.+.-++...+ .|++||-++.....+++.+..
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHH
Confidence 799999999999988665555 599999999999988887754
No 187
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=88.60 E-value=0.65 Score=44.02 Aligned_cols=44 Identities=11% Similarity=-0.019 Sum_probs=39.8
Q ss_pred eeeeccCCCcccccHHHHhh--cCCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~--~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++||+-||+|-.+...+.. .+++|.++|-++.=++.+++|+..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~ 91 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY 91 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 47999999999999998876 468999999999999999999854
No 188
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=88.59 E-value=0.79 Score=44.79 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=38.8
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..+|||++||+|-=|.++...+ -..|.++|.+++.+..+++++..
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r 160 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR 160 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 44689999999999999954443 24899999999999999999855
No 189
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=87.54 E-value=0.92 Score=39.65 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=42.5
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...++|||=||.|-++..-|++.+..|++||.+.+=+..+++|+..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999998754
No 190
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=87.07 E-value=0.37 Score=39.49 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.3
Q ss_pred cceeeeccCCCcccccHHHHhhc--CCeeEEecCcHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSH 191 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~ 191 (223)
...++||+||++|-.|..++... ..+|-.||..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999999998866665 489999998765
No 191
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=86.88 E-value=1.4 Score=42.24 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=58.6
Q ss_pred hhhhhhcccCCccchhccccCCCcccccchh----hHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc--
Q 027421 106 YREGISYWEGVEASVDGVLGGFGNVNEVDIK----GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-- 179 (223)
Q Consensus 106 Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~----~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~-- 179 (223)
|.....|+++ +.-=|=-|.|-.-..+.-. =...|+..+..... .....++++|||-|++...+|..+
T Consensus 29 ~~p~~GYYs~--~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~-----p~~~~lvEiGaG~G~l~~DiL~~l~~ 101 (370)
T COG1565 29 YDPEHGYYSS--AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGR-----PAPLKLVEIGAGRGTLASDILRTLRR 101 (370)
T ss_pred cCCCCccccc--chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcC-----CCCceEEEeCCCcChHHHHHHHHHHH
Confidence 4445567766 2222444445443333321 12556666544221 234579999999999999988765
Q ss_pred -------CCeeEEecCcHHHHHHHHHhhCc
Q 027421 180 -------FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 180 -------f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
-.++-+||||+.+.+.=++.|+.
T Consensus 102 L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 102 LYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred hCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 56899999999999988888866
No 192
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=86.01 E-value=1.3 Score=39.64 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhhCc
Q 027421 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 138 Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.-.||..|... .+..+||++|.++|--|..+..-+ =.+|+.+|+++.+.+.|++++..
T Consensus 67 ~g~lL~~l~~~-------~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ 126 (247)
T PLN02589 67 EGQFLNMLLKL-------INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK 126 (247)
T ss_pred HHHHHHHHHHH-------hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 34677666542 233589999999999998754332 24899999999999999999855
No 193
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=85.96 E-value=1.4 Score=39.26 Aligned_cols=41 Identities=15% Similarity=-0.127 Sum_probs=35.5
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHh
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~ 199 (223)
..+||+.|||-|+....|..+.+ +|+.||-|+.=++.+.+.
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQ 84 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHH
Confidence 36999999999999999766666 699999999999988663
No 194
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=85.59 E-value=1.3 Score=41.15 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=53.4
Q ss_pred hhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcC-----C
Q 027421 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-----N 181 (223)
Q Consensus 107 ~~a~~YWe~veaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f-----~ 181 (223)
..+.+.|+.+-..-+ =|+.-.+++|. +..-..|... . .+..+++|.|||-||=|+.||..+- -
T Consensus 38 ~~Gs~LFe~It~lpE----YYptr~E~~iL--~~~~~~Ia~~-i-----~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~ 105 (319)
T TIGR03439 38 DEGLKLFEEITYSPE----YYLTNDEIEIL--KKHSSDIAAS-I-----PSGSMLVELGSGNLRKVGILLEALERQKKSV 105 (319)
T ss_pred chHHHHHHHHHcCCc----cCChHHHHHHH--HHHHHHHHHh-c-----CCCCEEEEECCCchHHHHHHHHHHHhcCCCc
Confidence 477888887644333 03333344432 2222222221 0 1234799999999999999877652 2
Q ss_pred eeEEecCcHHHHHHHHHhhC
Q 027421 182 EVDLLEPVSHFLDAARESLA 201 (223)
Q Consensus 182 ~VDlVEP~e~Fle~Ake~l~ 201 (223)
+-..||-|..||+.+.+.+.
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELP 125 (319)
T ss_pred eEEEEECCHHHHHHHHHhhh
Confidence 47899999999999999986
No 195
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=85.58 E-value=1.4 Score=42.77 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=30.1
Q ss_pred ceeeeccCCCcccccHHHHhhc-----CCeeEEecCcHHHHHHHHHh
Q 027421 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~-----f~~VDlVEP~e~Fle~Ake~ 199 (223)
...|||+|||.|-++.-.|.-. ..+|-+||-++.-+..+++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~ 233 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKR 233 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHH
Confidence 4689999999999986544332 47999999988766665544
No 196
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=84.39 E-value=0.82 Score=43.68 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=26.8
Q ss_pred CcceeeeccCCCcccccHHHHhhcCCeeEEecCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV 189 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~ 189 (223)
.+..+|||+||.+|-.|..|+.... .|.+||..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g 242 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNG 242 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEech
Confidence 3567999999999999988655544 99999944
No 197
>PRK00536 speE spermidine synthase; Provisional
Probab=84.23 E-value=1.4 Score=40.08 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=39.4
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...+||=+|.|=|-....+|.+ -.+||+||-.+..++.+++++..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~ 116 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPH 116 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHH
Confidence 3469999999999999997655 46999999999999999998754
No 198
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=84.03 E-value=2.1 Score=38.68 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=37.3
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
....|.|||.|-++.- -++..++|-++|-.++-.+.|++++
T Consensus 34 d~~~DLGaGsGiLs~~-Aa~~A~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 34 DTFADLGAGSGILSVV-AAHAAERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred hceeeccCCcchHHHH-HHhhhceEEEEecCcHHHHHhhhcC
Confidence 5789999999999954 7788999999999999999999996
No 199
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=83.93 E-value=1.3 Score=38.73 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=43.6
Q ss_pred eeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCccCCCCCCCCCcceEEEccCC
Q 027421 161 ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (223)
Q Consensus 161 ALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~~~~~~~~~~kv~nf~cvgLQ 222 (223)
+.||||--|-+...|+... +.+|-++|-+++=++.|++++.... -.++|.....=||+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~ 59 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLE 59 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCccc
Confidence 5799999999999988775 6789999999999999999986621 12456555555554
No 200
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=83.21 E-value=3.1 Score=36.43 Aligned_cols=41 Identities=20% Similarity=-0.002 Sum_probs=33.9
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake 198 (223)
...+||+-|||-|.....|..+.+ +|+.||-|+.=++.+.+
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~ 77 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFE 77 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHH
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHH
Confidence 346999999999999988665555 99999999999999844
No 201
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.74 E-value=1.5 Score=39.97 Aligned_cols=34 Identities=32% Similarity=0.273 Sum_probs=30.2
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e 190 (223)
+..++||+||-+|-+|.-+|...+++|-+||-.-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~ 112 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY 112 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccC
Confidence 4569999999999999887777799999999876
No 202
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=81.32 E-value=1.7 Score=40.34 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=37.4
Q ss_pred ceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..-|||+||-.|-+|.. +++.| ..|-=||-.+..++.|++++.-
T Consensus 59 ~~~~LDIGCNsG~lt~~-iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLS-IAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cceeEeccCCcchhHHH-HHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 45799999999999988 67766 5678899999999999998743
No 203
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=81.17 E-value=3.7 Score=36.64 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=32.2
Q ss_pred eeeeccCCCcccccHHHHhhc--CCeeEEecCcHHHHHHHHHhh
Q 027421 159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e~Fle~Ake~l 200 (223)
.-+||+|||.|-||..|...+ ....-+.|-++.=+++-++..
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA 88 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETA 88 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence 579999999999997643333 345778999999998876654
No 204
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=80.75 E-value=1.4 Score=37.72 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=30.9
Q ss_pred cceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake 198 (223)
...++||+|+|.|.++..|+..+ --+++++|- +..++.+++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~ 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc
Confidence 34589999999999999977664 247888887 777887777
No 205
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=79.40 E-value=4 Score=40.14 Aligned_cols=103 Identities=11% Similarity=0.118 Sum_probs=65.5
Q ss_pred ccCHHHHHHHHhccCCchhhhhhhhhhhhhhcccCC-ccchhccccCCCccccc--------------chhhHHHHHHHH
Q 027421 81 FKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV-EASVDGVLGGFGNVNEV--------------DIKGSEAFLQML 145 (223)
Q Consensus 81 y~sw~EmWk~e~~~d~~~~~~k~~~Y~~a~~YWe~v-eaTvdGMLGGf~~vs~~--------------Di~~Sr~FL~~L 145 (223)
+.-|...|+.-+-. .+-..-+.+||+-+ =.|-++|+--+..+|.. .|+.--..++.|
T Consensus 77 ~~~~~a~lk~fl~~--------lks~a~~~~~~r~q~i~t~~e~l~~~~~~sq~~~l~rkh~~~k~qhEi~~lselvSsi 148 (476)
T KOG2651|consen 77 VVRYRAVLKLFLLA--------LKSTACALAFTRMQGIQTPSEFLENPSQSSQLTALFRKHVRPKKQHEIRRLSELVSSI 148 (476)
T ss_pred hhhhhhhHHHHHHH--------HHHHhhhHHHHhcccccCchhhhcchhhhhhhhhhhhhcccHHHHHHHHHHHHHHHHH
Confidence 55566667654432 13345677888865 23455677666544431 122223344444
Q ss_pred hcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHH
Q 027421 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 146 ~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake 198 (223)
-.- ..-..+.|+|||+|-++.-+=+++--.|-+||-+..|.+.|+.
T Consensus 149 ~~f-------~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 149 SDF-------TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred Hhh-------cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 321 2335799999999999988767777799999999999987753
No 206
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=78.91 E-value=2.8 Score=38.07 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=33.2
Q ss_pred CcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+..+.||+|||+=-.-.--..+.|++|.+.|.++.=++.+++.+..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~ 101 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRK 101 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCC
Confidence 45679999999993222111236799999999999999988888755
No 207
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=78.42 E-value=2 Score=42.80 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhcCCCCCcCCCcceeeeccCCCccccc
Q 027421 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRIT 172 (223)
Q Consensus 136 ~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVT 172 (223)
.+.-.||..+....... ......+.-|-|||||-+
T Consensus 432 g~vLnFLe~V~~rq~~l--~~AgpIvVHCSAGIGrTG 466 (600)
T KOG0790|consen 432 GGVLNFLEEVNHRQESL--MDAGPIVVHCSAGIGRTG 466 (600)
T ss_pred cHHHHHHHHhhhhhccc--cccCcEEEEccCCcCCcc
Confidence 45567777765421111 112347999999999965
No 208
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=78.08 E-value=3 Score=38.46 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=33.7
Q ss_pred eeeccCCCcccccHHHHhhcCC---eeEEecCcHHHHHHHHHhh
Q 027421 160 VALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~---~VDlVEP~e~Fle~Ake~l 200 (223)
++|++|||.|--.-|+|.-.-+ .|-+.|-|+.=++..+++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~ 117 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSS 117 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcc
Confidence 8999999999999996654433 5888999999888887754
No 209
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=76.99 E-value=6 Score=36.42 Aligned_cols=60 Identities=17% Similarity=0.090 Sum_probs=50.0
Q ss_pred cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 133 ~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.|-...|.++..+.. ..++|||=|=+|-+|.+-+...+.+|+-||.|...++.+++++.-
T Consensus 109 lDqR~nR~~v~~~~~----------gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l 168 (286)
T PF10672_consen 109 LDQRENRKWVRKYAK----------GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL 168 (286)
T ss_dssp GGGHHHHHHHHHHCT----------TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHcC----------CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 566678888888643 258999999999999998888899999999999999999999754
No 210
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=74.40 E-value=3.4 Score=40.08 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=37.6
Q ss_pred ceeeeccCCCcccccHHHHhhcC---------CeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f---------~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||.+||.|.+...++..+. .+|..+|-++..++.++.++..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 45899999999999998775542 5789999999999999888644
No 211
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=73.26 E-value=3.3 Score=37.24 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=36.5
Q ss_pred eeeeccCCCcccccHHHHhhcCCe-eEEecCcHHHHHHHHHhh
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESL 200 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~-VDlVEP~e~Fle~Ake~l 200 (223)
.+|||.|||-|-+=..|...-|.. .+=||-|++=++-|+...
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niA 111 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIA 111 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Confidence 389999999999999988888876 899999999999886543
No 212
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=70.58 E-value=7 Score=36.48 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=34.3
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
+..+|||+|||=|-...--......++.-||+++.=+++|++..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHH
Confidence 56799999999888666656667899999999999999999876
No 213
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=66.95 E-value=12 Score=37.75 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=38.7
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...-+||+|+|+|=++---.....+.|++.|-=..|.+.|+.....
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k 111 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK 111 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc
Confidence 3457999999999988665555689999999999999999987644
No 214
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=66.00 E-value=8.1 Score=34.38 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=38.4
Q ss_pred eeeeccCCCcccccHHHHhhcCCe--eEEecCcHHHHHHHHHhhCccCCCCCCCCCcceEEEc
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~--VDlVEP~e~Fle~Ake~l~~~~~~~~~~~kv~nf~cv 219 (223)
..+||||||-|+.... +++..-+ +--||+-..=+..|.+.+.+ .++.|+.++
T Consensus 50 pi~lEIGfG~G~~l~~-~A~~nP~~nfiGiEi~~~~v~~~l~k~~~--------~~l~Nlri~ 103 (227)
T COG0220 50 PIVLEIGFGMGEFLVE-MAKKNPEKNFLGIEIRVPGVAKALKKIKE--------LGLKNLRLL 103 (227)
T ss_pred cEEEEECCCCCHHHHH-HHHHCCCCCEEEEEEehHHHHHHHHHHHH--------cCCCcEEEE
Confidence 4799999999999999 6776644 45678888777777776644 455566554
No 215
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.38 E-value=3.2 Score=40.59 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHH--HHhhcCCeeEEecCcHHHHH
Q 027421 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKN--LLIRYFNEVDLLEPVSHFLD 194 (223)
Q Consensus 139 r~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~--LLl~~f~~VDlVEP~e~Fle 194 (223)
+.-|..|.... +. -...++||||+|+|...-. =+.|-.+.+.+||-++..-+
T Consensus 99 ~asL~~L~~~~-~d---fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrk 152 (484)
T COG5459 99 RASLDELQKRV-PD---FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRK 152 (484)
T ss_pred HHHHHHHHHhC-CC---cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHH
Confidence 45566665432 11 1224699999999986533 23355688999997765444
No 216
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=64.09 E-value=9.9 Score=35.92 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=39.7
Q ss_pred cceeeeccCCCcccccHHHHhhcC---CeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f---~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..-++||+-||.||.--..|...- .+|.++|-++.=++..++.+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~ 183 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE 183 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 456999999999999888777654 6899999999999999988765
No 217
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=63.16 E-value=9.8 Score=34.45 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=34.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeE-EecCcH
Q 027421 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVD-LLEPVS 190 (223)
Q Consensus 131 s~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VD-lVEP~e 190 (223)
-..|...-+.|++.|... ..-.++|||||+++-+..+++.- +.+- ++.|..
T Consensus 95 ~~~~~~~~~~~~~~l~~~--------~D~iliD~~aGl~~~~~~~~~~s-d~~viVt~pe~ 146 (262)
T COG0455 95 AKLDPEDLEDVIKELEEL--------YDYILIDTGAGLSRDTLSFILSS-DELVIVTTPEP 146 (262)
T ss_pred hhcCHHHHHHHHHHHHhc--------CCEEEEeCCCCccHHHHHHHHhc-CcEEEEeCCCc
Confidence 344545556777777552 25689999999999999988886 5444 444443
No 218
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=63.01 E-value=15 Score=33.78 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=35.6
Q ss_pred CcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
....+||==|||-||++-.+ +...-.|+..|-|-.|+-...=-+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Ei-a~~G~~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEI-AKLGYAVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred CCccEEEEcCCCcchHHHHH-hhccceEEEEEchHHHHHHHHHHH
Confidence 34568999999999999995 554459999999999988766544
No 219
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=62.74 E-value=14 Score=33.42 Aligned_cols=44 Identities=18% Similarity=0.049 Sum_probs=39.6
Q ss_pred eeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.++.||||=-+.+...|+... +.++.++|-+++=++.|.+++..
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~ 62 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK 62 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh
Confidence 459999999999999988775 79999999999999999998865
No 220
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=62.41 E-value=8.4 Score=34.78 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=27.6
Q ss_pred eeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 159 ~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
.++|||=||-||.+.= |+.+-.+|+++|-++-.....++-|
T Consensus 77 ~~VLDaTaGLG~Da~v-lA~~G~~V~~lErspvia~Ll~dGL 117 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFV-LASLGCKVTGLERSPVIAALLKDGL 117 (234)
T ss_dssp --EEETT-TTSHHHHH-HHHHT--EEEEE--HHHHHHHHHHH
T ss_pred CEEEECCCcchHHHHH-HHccCCeEEEEECCHHHHHHHHHHH
Confidence 4899999999999965 6666779999999998877665433
No 221
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=61.98 E-value=18 Score=32.79 Aligned_cols=46 Identities=20% Similarity=0.059 Sum_probs=38.1
Q ss_pred cceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||+-|++|.=|.++..-+. ..|.++|.+.+=+..+++++..
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r 132 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR 132 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh
Confidence 346799999999999998544443 4999999999999999988755
No 222
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=60.37 E-value=16 Score=34.61 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=38.7
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
..++||.=||||=+|.+........|.++|-++.=++.+++++.-
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~L 233 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRL 233 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHh
Confidence 468999999999999995544444499999999999999999866
No 223
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=60.27 E-value=5.2 Score=37.12 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=36.2
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ak 197 (223)
....+.++|.|+|-+|..+|..-....++||-...|+..++
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ 90 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQ 90 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHH
Confidence 44689999999999999999888889999999999988654
No 224
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=59.13 E-value=14 Score=36.24 Aligned_cols=43 Identities=16% Similarity=0.026 Sum_probs=33.4
Q ss_pred cceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l 200 (223)
....+||+|||-|..+.. ++..+ ..+--||....-+..|-..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~-~A~~~p~~~~iGiE~~~~~~~~~~~~~ 391 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFIN-QAKMNPDALFIGVEVYLNGVANVLKLA 391 (506)
T ss_pred CCceEEEECCCchHHHHH-HHHhCCCCCEEEEEeeHHHHHHHHHHH
Confidence 346899999999999999 56666 36677899888777766554
No 225
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=55.80 E-value=11 Score=37.75 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=52.1
Q ss_pred CHHHHHHHHhccCCchhhhhhhhhhhhhhcccCCccchhccccCCCccc-ccchhhHHHHHHHHhcCCCCCcCCCcceee
Q 027421 83 NAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVN-EVDIKGSEAFLQMLLSDRFPNARNNQHLVA 161 (223)
Q Consensus 83 sw~EmWk~e~~~d~~~~~~k~~~Y~~a~~YWe~veaTvdGMLGGf~~vs-~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rA 161 (223)
|-+.+|...+.- .+-.- .++.+-|=.++...=-.=||=.+.. -.| .--.+|.++...... ......+
T Consensus 54 SRd~iW~~Nvph------~~L~~-~K~~qnWv~~~gd~~~FPgggt~F~~Ga~--~Yid~i~~~~~~~~~---~g~iR~~ 121 (506)
T PF03141_consen 54 SRDYIWYANVPH------TKLAE-EKADQNWVRVEGDKFRFPGGGTMFPHGAD--HYIDQIAEMIPLIKW---GGGIRTA 121 (506)
T ss_pred ccceeeecccCc------hHHhh-hcccccceeecCCEEEeCCCCccccCCHH--HHHHHHHHHhhcccc---CCceEEE
Confidence 457788876532 22222 3455666555443322333311111 111 122345554432111 1344689
Q ss_pred eccCCCcccccHHHHhhcCCeeEE--ecCcHHHHHHHHH
Q 027421 162 LDCGSGIGRITKNLLIRYFNEVDL--LEPVSHFLDAARE 198 (223)
Q Consensus 162 LDcGAGIGRVTk~LLl~~f~~VDl--VEP~e~Fle~Ake 198 (223)
||+|||.|.++-.+|.+-.-.+.. -|.-+.+++-|-|
T Consensus 122 LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 122 LDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred EeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 999999999999987774433321 2344445555544
No 226
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=53.02 E-value=18 Score=32.41 Aligned_cols=43 Identities=19% Similarity=0.097 Sum_probs=38.1
Q ss_pred eeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+++|+=||+|-.+..|....|+.|-+||-.+.-++..+.+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~ 44 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN 44 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC
Confidence 5899999999999997766699999999999999999988644
No 227
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=53.00 E-value=15 Score=37.11 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=60.1
Q ss_pred hcccCCccchhc-------cccCCCcc-----------cc-----cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCC
Q 027421 111 SYWEGVEASVDG-------VLGGFGNV-----------NE-----VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSG 167 (223)
Q Consensus 111 ~YWe~veaTvdG-------MLGGf~~v-----------s~-----~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAG 167 (223)
-||.+.-.|.+| .+||-..| |. ++-...+.|-+.+.... +-......||+=||
T Consensus 318 l~~q~~~~ts~~~~~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~----~l~~~k~llDv~CG 393 (534)
T KOG2187|consen 318 LYLQESGHTSDGQEGKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWA----GLPADKTLLDVCCG 393 (534)
T ss_pred EEEecccccccCCCCCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHh----CCCCCcEEEEEeec
Confidence 488887777777 45553222 21 23233444444443311 11234789999999
Q ss_pred cccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 168 IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 168 IGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+|.++.. |++.+++|-=||-++.=++-|+.+...
T Consensus 394 TG~igla-la~~~~~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 394 TGTIGLA-LARGVKRVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred CCceehh-hhccccceeeeecChhhcchhhhcchh
Confidence 9999999 899999999999999999999988655
No 228
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=52.14 E-value=9.7 Score=35.90 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHH
Q 027421 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD 194 (223)
Q Consensus 140 ~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle 194 (223)
.|++.|... .....|.|+|||=++++...-.+ +-..|||-+.+.-+.
T Consensus 170 ~ii~~ik~r-------~~~~vIaD~GCGEakiA~~~~~k-V~SfDL~a~~~~V~~ 216 (325)
T KOG3045|consen 170 VIIRKIKRR-------PKNIVIADFGCGEAKIASSERHK-VHSFDLVAVNERVIA 216 (325)
T ss_pred HHHHHHHhC-------cCceEEEecccchhhhhhccccc-eeeeeeecCCCceee
Confidence 567777763 34468999999999999642222 345677766655443
No 229
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=50.21 E-value=12 Score=33.71 Aligned_cols=43 Identities=21% Similarity=0.107 Sum_probs=35.0
Q ss_pred CcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHh
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~ 199 (223)
-...+|||.|||.|=+++--.....+.|.+-|.. .|+..+-+.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~-P~~~~ai~l 120 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADID-PWLEQAIRL 120 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCC-hHHHHHhhc
Confidence 3557999999999999998777778999999998 666666543
No 230
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=47.86 E-value=38 Score=32.76 Aligned_cols=60 Identities=20% Similarity=0.112 Sum_probs=51.2
Q ss_pred cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 133 ~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.|-..+|..|..+.. ..++|||=|=+|-.|.+-+...+++|+-||-|..-++.|++|+.-
T Consensus 203 lDqR~~R~~l~~~~~----------GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L 262 (393)
T COG1092 203 LDQRDNRRALGELAA----------GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL 262 (393)
T ss_pred HHhHHHHHHHhhhcc----------CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh
Confidence 565677777777544 358999999999999998888899999999999999999999744
No 231
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=45.21 E-value=38 Score=31.76 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=38.5
Q ss_pred cceeeeccCCCcccccHHHHhhcCCe----eEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNE----VDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~----VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..+|||.=|++|-=|.+ |+.+... |.++|.+++=+..+++++..
T Consensus 156 pge~VlD~cAAPGGKTth-la~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R 204 (355)
T COG0144 156 PGERVLDLCAAPGGKTTH-LAELMENEGAIVVAVDVSPKRLKRLRENLKR 204 (355)
T ss_pred CcCEEEEECCCCCCHHHH-HHHhcCCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 457999999999999999 5555543 79999999999999999865
No 232
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=44.64 E-value=39 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=38.9
Q ss_pred CcceeeeccCCCcccccHHHHhhcC---CeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f---~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.+..+||+-|.|.|-++-. |++-+ .||--.|.-+.-.++|.+.+.+
T Consensus 104 ~PGsvV~EsGTGSGSlSha-iaraV~ptGhl~tfefH~~Ra~ka~eeFr~ 152 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHA-IARAVAPTGHLYTFEFHETRAEKALEEFRE 152 (314)
T ss_pred CCCCEEEecCCCcchHHHH-HHHhhCcCcceEEEEecHHHHHHHHHHHHH
Confidence 3568999999999999976 55555 7999999999999999998866
No 233
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.56 E-value=38 Score=30.97 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=44.7
Q ss_pred Ccccccchhh-HHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHH---hhcCCeeEEecCcHHHHHHHHHhhCcc
Q 027421 128 GNVNEVDIKG-SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPE 203 (223)
Q Consensus 128 ~~vs~~Di~~-Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LL---l~~f~~VDlVEP~e~Fle~Ake~l~~~ 203 (223)
-++|.+++.. .-..|..... +...+||+|+|.|-+|--+- ..-+..+.=||-.+..++.+++++..+
T Consensus 61 ~~iSAp~mha~~le~L~~~L~---------pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 61 LTISAPHMHATALEYLDDHLQ---------PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred eEEcchHHHHHHHHHHHHhhc---------cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence 4678888753 2333333222 23679999999999986532 223444467889999999999988553
No 234
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=43.43 E-value=37 Score=34.62 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=36.2
Q ss_pred ceeeeccCCCcccccHHHHhh-------------------------------------------cCCeeEEecCcHHHHH
Q 027421 158 HLVALDCGSGIGRITKNLLIR-------------------------------------------YFNEVDLLEPVSHFLD 194 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~-------------------------------------------~f~~VDlVEP~e~Fle 194 (223)
....+|-.||.|++-+.-.+- ...+|..+|-++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 468999999999999775431 0126999999999999
Q ss_pred HHHHhhCc
Q 027421 195 AARESLAP 202 (223)
Q Consensus 195 ~Ake~l~~ 202 (223)
.|++|+..
T Consensus 271 ~A~~N~~~ 278 (702)
T PRK11783 271 AARKNARR 278 (702)
T ss_pred HHHHHHHH
Confidence 99999855
No 235
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=41.19 E-value=45 Score=30.30 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=31.3
Q ss_pred CcceeeeccCCCcccccHHHHhhcCC---eeEEecCcHHHHHHH
Q 027421 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAA 196 (223)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~LLl~~f~---~VDlVEP~e~Fle~A 196 (223)
.+.+++|-+||..|+---+ ++.++. .|=+||.++.....+
T Consensus 72 k~gskVLYLGAasGTTVSH-vSDIvg~~G~VYaVEfs~r~~rdL 114 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSH-VSDIVGPDGVVYAVEFSPRSMRDL 114 (229)
T ss_dssp -TT-EEEEETTTTSHHHHH-HHHHHTTTSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEecccCCCccch-hhhccCCCCcEEEEEecchhHHHH
Confidence 3457999999999987767 788888 999999999554433
No 236
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.25 E-value=33 Score=32.99 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=35.2
Q ss_pred CcceeeeccCCCc-ccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 156 NQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 156 ~~~~rALDcGAGI-GRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+..++||=+|||+ |=+|.-.+.-+ +.+|-++|.++.=++.|++ ++.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga 215 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA 215 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC
Confidence 4567999999994 66665433332 5899999999999999998 544
No 237
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=39.97 E-value=48 Score=32.92 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=36.4
Q ss_pred cceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake 198 (223)
.-.++|=+|.|-|=-...+|..= +.+|++||-.++|+|.++.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~ 331 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASH 331 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhh
Confidence 34589999999999999966543 8999999999999999984
No 238
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=37.79 E-value=12 Score=36.15 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=18.4
Q ss_pred ceeeeccCCCcccccHHHHhhcC
Q 027421 158 HLVALDCGSGIGRITKNLLIRYF 180 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f 180 (223)
..+++|.|||.|..|..++..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI 86 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIV 86 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHH
Confidence 46899999999999977655544
No 239
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=37.18 E-value=53 Score=26.95 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=34.0
Q ss_pred cceeeeccCCC-cccccHHHHhhcCCeeEEecCcHHHHHHHHHh
Q 027421 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 157 ~~~rALDcGAG-IGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~ 199 (223)
+..++|-.|+| +|..+..++...-.+|.+++.++.-.+.+++.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 34578888887 68888887777778999999998877777553
No 240
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=36.46 E-value=54 Score=30.29 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCC-eeEEecCcHHHHHHHHH
Q 027421 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (223)
Q Consensus 138 Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~-~VDlVEP~e~Fle~Ake 198 (223)
-|.||++|... .....++|+=|||=-++.... .-++ -|.+||||-+=+..|+.
T Consensus 122 lR~~l~~l~~~-------~~e~VivDtEAGiEHfgRg~~-~~vD~vivVvDpS~~sl~taer 175 (255)
T COG3640 122 LRRLLRHLILN-------RYEVVIVDTEAGIEHFGRGTI-EGVDLVIVVVDPSYKSLRTAER 175 (255)
T ss_pred HHHHHHHHhcc-------cCcEEEEecccchhhhccccc-cCCCEEEEEeCCcHHHHHHHHH
Confidence 47888887653 234689999999977777743 3344 45678999999988874
No 241
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=35.20 E-value=68 Score=25.99 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=31.9
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake 198 (223)
+...|||.=||+|+...- -..+=.+--.+|.++.|++.|++
T Consensus 191 ~gdiVlDpF~GSGTT~~a-a~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVA-AEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHH-HHHTT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHH-HHHcCCeEEEEeCCHHHHHHhcC
Confidence 356899999999998877 34556688999999999999875
No 242
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=34.61 E-value=29 Score=27.35 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=22.2
Q ss_pred eeccCCC-ccc-ccHHHHhhcCCeeEEecCc
Q 027421 161 ALDCGSG-IGR-ITKNLLIRYFNEVDLLEPV 189 (223)
Q Consensus 161 ALDcGAG-IGR-VTk~LLl~~f~~VDlVEP~ 189 (223)
+|=+||| +|. +.++|....+.+++++|+.
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4556776 665 7778777778999999987
No 243
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=33.92 E-value=1e+02 Score=27.35 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=32.0
Q ss_pred cceeeeccCCCcccccHHHHhh--------cCCeeEEecCcHHHHHHHHHhh
Q 027421 157 QHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~--------~f~~VDlVEP~e~Fle~Ake~l 200 (223)
...++||-.||.|.+-..++.. .-.++.-+|..+..+..|+-++
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl 97 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNL 97 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHH
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhh
Confidence 4568999999999987775542 2356778999999998887654
No 244
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=31.89 E-value=29 Score=29.08 Aligned_cols=46 Identities=22% Similarity=0.099 Sum_probs=32.9
Q ss_pred cceeeeccCCCcccccHHHHhhc--CC--------eeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRY--FN--------EVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~--f~--------~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+...+||-=||.|++-..-.+-. +. .+--+|-++.+++.|++++..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 34689999999999987632222 11 256999999999999999854
No 245
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=31.48 E-value=25 Score=31.84 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=14.1
Q ss_pred cceeeeccCCCcccccH
Q 027421 157 QHLVALDCGSGIGRITK 173 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk 173 (223)
+..++|||||-+|.-|.
T Consensus 69 p~~~VlD~G~APGsWsQ 85 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQ 85 (232)
T ss_pred CCCEEEEccCCCChHHH
Confidence 45799999999998663
No 246
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.64 E-value=52 Score=28.86 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=36.1
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
....++|+|||.|-++..+-.+--..|-=||-.+.=++.+..|.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNa 91 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNA 91 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhch
Confidence 34579999999999997766666688888999999898887765
No 247
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=28.82 E-value=66 Score=23.93 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=23.5
Q ss_pred CcccccHHHHhhc--C-CeeEEecCcHHHHHHHHHh
Q 027421 167 GIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 167 GIGRVTk~LLl~~--f-~~VDlVEP~e~Fle~Ake~ 199 (223)
|-|+++..++..+ . ..|.+||..+.-++.+++.
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence 3457776654332 3 3899999999999998875
No 248
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=27.55 E-value=75 Score=29.06 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=34.6
Q ss_pred cceeeeccCCCc-ccccHHHHhhcC-CeeEEecCcHHHHHHHHHh
Q 027421 157 QHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 157 ~~~rALDcGAGI-GRVTk~LLl~~f-~~VDlVEP~e~Fle~Ake~ 199 (223)
+..++|..|||. |..+..++..+- .+|..++.++..++.+++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 345799999987 999988666654 3699999999999988876
No 249
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=27.46 E-value=52 Score=29.20 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=29.6
Q ss_pred eeeccCCCcccccHHHHhhcCCeeEE--ecCcHHHHHHHHHhh
Q 027421 160 VALDCGSGIGRITKNLLIRYFNEVDL--LEPVSHFLDAARESL 200 (223)
Q Consensus 160 rALDcGAGIGRVTk~LLl~~f~~VDl--VEP~e~Fle~Ake~l 200 (223)
+||++|||+|--+.+| ++.|-+++- -|+.+..+...+.++
T Consensus 28 ~vLEiaSGtGqHa~~F-A~~lP~l~WqPSD~~~~~~~sI~a~~ 69 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYF-AQALPHLTWQPSDPDDNLRPSIRAWI 69 (204)
T ss_pred eEEEEcCCccHHHHHH-HHHCCCCEEcCCCCChHHHhhHHHHH
Confidence 6999999999999994 667777653 466666665555544
No 250
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.59 E-value=1.2e+02 Score=26.86 Aligned_cols=40 Identities=23% Similarity=0.119 Sum_probs=28.7
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHH
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ak 197 (223)
....+|+|+|-|||-..---.-.-.-+=||-++=.+..++
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysr 112 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSR 112 (199)
T ss_pred CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHH
Confidence 3579999999999986632222245677888888877554
No 251
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=26.42 E-value=1.5e+02 Score=27.33 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=42.0
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcC--CeeEEecCcHHHHHHHHHhhCc
Q 027421 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 137 ~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f--~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
.-..|...++... ....++||+|||-==+|.+.+ +.. ..+-+.|-+..+++....++.-
T Consensus 91 ~Ld~fY~~if~~~------~~p~sVlDigCGlNPlalp~~-~~~~~a~Y~a~DID~~~ve~l~~~l~~ 151 (251)
T PF07091_consen 91 NLDEFYDEIFGRI------PPPDSVLDIGCGLNPLALPWM-PEAPGATYIAYDIDSQLVEFLNAFLAV 151 (251)
T ss_dssp GHHHHHHHHCCCS---------SEEEEET-TTCHHHHHTT-TSSTT-EEEEEESBHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcC------CCCchhhhhhccCCceehhhc-ccCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 3457888877631 224689999999998888855 443 3889999999999998887633
No 252
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=26.21 E-value=56 Score=30.54 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=32.3
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD 194 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle 194 (223)
...|+||.|||.|=-.+....+....|+.-|-+..+++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 44689999999998888866676689999999999984
No 253
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=26.15 E-value=48 Score=30.39 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=31.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhhcCCe
Q 027421 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE 182 (223)
Q Consensus 130 vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~~f~~ 182 (223)
+|.-++..|..|=...... +..--..|||||-|-+... |++.|-.
T Consensus 40 vsP~~mDWS~~yp~f~~~~-------~~kvefaDIGCGyGGLlv~-Lsp~fPd 84 (249)
T KOG3115|consen 40 VSPQEMDWSKYYPDFRRAL-------NKKVEFADIGCGYGGLLMK-LAPKFPD 84 (249)
T ss_pred CChHhCcHHHhhhhhhhhc-------cccceEEeeccCccchhhh-ccccCcc
Confidence 6666666887665544321 1224689999999999998 7888844
No 254
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=25.77 E-value=58 Score=31.28 Aligned_cols=86 Identities=21% Similarity=0.129 Sum_probs=57.3
Q ss_pred CccchhccccCCCcccccchh--hHHHHHHHHhcCCCC-------CcCCCcceeeeccCCCcccccHHHHhh-cCCeeEE
Q 027421 116 VEASVDGVLGGFGNVNEVDIK--GSEAFLQMLLSDRFP-------NARNNQHLVALDCGSGIGRITKNLLIR-YFNEVDL 185 (223)
Q Consensus 116 veaTvdGMLGGf~~vs~~Di~--~Sr~FL~~L~~~~~~-------~~~~~~~~rALDcGAGIGRVTk~LLl~-~f~~VDl 185 (223)
.+++++=.+|-++-++-+|.. .+-.-+..++..+-. .. ......+.|.=||||-+|-+||.. .++.|-+
T Consensus 145 R~~~v~~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~-sc~~eviVDLYAGIGYFTlpflV~agAk~V~A 223 (351)
T KOG1227|consen 145 RPPNVQPLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNT-SCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFA 223 (351)
T ss_pred CCCccccccccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhc-ccccchhhhhhcccceEEeehhhccCccEEEE
Confidence 567788788888877766641 111122233321100 00 012368999999999999977765 4899999
Q ss_pred ecCcHHHHHHHHHhhCc
Q 027421 186 LEPVSHFLDAARESLAP 202 (223)
Q Consensus 186 VEP~e~Fle~Ake~l~~ 202 (223)
.|=++.=+|.++.++..
T Consensus 224 ~EwNp~svEaLrR~~~~ 240 (351)
T KOG1227|consen 224 CEWNPWSVEALRRNAEA 240 (351)
T ss_pred EecCHHHHHHHHHHHHh
Confidence 99999999999987644
No 255
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.38 E-value=1.3e+02 Score=24.00 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=33.2
Q ss_pred ceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhh
Q 027421 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l 200 (223)
...++||++|++..+..+|.---.-|-.++|....++.+...+
T Consensus 96 D~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~~~~i~~~~~~~ 138 (195)
T PF01656_consen 96 DYIIIDTPPGLSDPVRNALAAADYVIVPIEPDPSSIEGAERLI 138 (195)
T ss_dssp SEEEEEECSSSSHHHHHHHHTSSEEEEEEESSHHHHHHHHHHH
T ss_pred cceeecccccccHHHHHHHHhCceeeeecCCcHHHHHHHHHHH
Confidence 3589999999999998866654456677899888888776543
No 256
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=23.78 E-value=1.8e+02 Score=27.27 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=38.3
Q ss_pred ceeeeccCCCcccccHHHHhhc-CCeeEEecCcHHHHHHHHHhhCc
Q 027421 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~-f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
...++||=+|=|--|..+|..+ -.+|..+|..+.-++.+++.+..
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 3589999999999999977543 26899999999999999998754
No 257
>PRK13699 putative methylase; Provisional
Probab=23.22 E-value=2e+02 Score=25.21 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=36.7
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHHHhhCc
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake~l~~ 202 (223)
+...|||+=||+|....-- ...-.+...+|-++.+.+.+.+.+..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa-~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAA-LQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHH-HHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 4468999999999988773 45566888999999999999887643
No 258
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=22.87 E-value=1.2e+02 Score=26.11 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=32.3
Q ss_pred ceeeeccCCC-cccccHHHHhhcCCeeEEecCcHHHHHHHHH
Q 027421 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (223)
Q Consensus 158 ~~rALDcGAG-IGRVTk~LLl~~f~~VDlVEP~e~Fle~Ake 198 (223)
..++|..|+| +|..+..++...-.+|.+++.++.-.+.+++
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 3577778876 6888888777666679999999988887765
No 259
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=22.73 E-value=92 Score=25.53 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=34.8
Q ss_pred hhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhh
Q 027421 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR 178 (223)
Q Consensus 107 ~~a~~YWe~veaTvdGMLGGf~~vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~ 178 (223)
..-++-|-. .|. +.-+--+--+..+||-.|-.....+ .+...-.|+|||-|=+. ++|..
T Consensus 20 ~~lv~~W~E--~Td-------P~K~VfEDlaIAAyLi~LW~~~~~~---~~~~~FVDlGCGNGLLV-~IL~~ 78 (112)
T PF07757_consen 20 RWLVDNWPE--STD-------PQKHVFEDLAIAAYLIELWRDMYGE---QKFQGFVDLGCGNGLLV-YILNS 78 (112)
T ss_pred HHHHHhCcc--cCC-------chhhHHHHHHHHHHHHHHHhcccCC---CCCCceEEccCCchHHH-HHHHh
Confidence 467778843 222 2222222247788998886533221 23446899999999888 44443
No 260
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=22.27 E-value=88 Score=30.29 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=30.6
Q ss_pred cceeeeccCCCcccccHHHHhhcCCeeEEecCcHHHHHHHH
Q 027421 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (223)
Q Consensus 157 ~~~rALDcGAGIGRVTk~LLl~~f~~VDlVEP~e~Fle~Ak 197 (223)
..-++|==|||.||++-. |+-.+-.+.--|.|--|+-+..
T Consensus 150 ~ki~iLvPGaGlGRLa~d-la~~G~~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYD-LACLGFKCQGNEFSYFMLICSS 189 (369)
T ss_pred cCceEEecCCCchhHHHH-HHHhcccccccHHHHHHHHHHH
Confidence 345899999999999999 5555445555699888887654
No 261
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=21.89 E-value=98 Score=27.45 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=27.1
Q ss_pred eeeccCCC-ccc-ccHHHHhhcCCeeEEecCcHHHHHHHHHh
Q 027421 160 VALDCGSG-IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (223)
Q Consensus 160 rALDcGAG-IGR-VTk~LLl~~f~~VDlVEP~e~Fle~Ake~ 199 (223)
++.=+||| +|+ ++.. |+..--+|.++|.++.-++.+++.
T Consensus 5 ~I~ViGaG~mG~~iA~~-la~~G~~V~l~d~~~~~l~~~~~~ 45 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQV-FARTGYDVTIVDVSEEILKNAMEL 45 (291)
T ss_pred EEEEECccHHHHHHHHH-HHhcCCeEEEEeCCHHHHHHHHHH
Confidence 46667887 565 4444 444444899999999999876553
No 262
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=21.52 E-value=1e+02 Score=33.89 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=25.1
Q ss_pred cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhh
Q 027421 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR 178 (223)
Q Consensus 133 ~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~ 178 (223)
.|..+=-.||.++..-+.. +..-.++=|-|||||-+.-+|+.
T Consensus 1043 ~D~~~FL~FleevrsvR~~----t~pPilvHCSAGiGRTGVlIl~e 1084 (1144)
T KOG0792|consen 1043 DDPNDFLDFLEEVRSVRRG----TNPPILVHCSAGIGRTGVLILME 1084 (1144)
T ss_pred CChHHHHHHHHHHHHHhcc----CCCCeEEEccCCCCcceehHHHH
Confidence 3444545666666542111 12247999999999976655544
No 263
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=21.04 E-value=52 Score=29.77 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=17.5
Q ss_pred ceeeeccCCCcccccHHHHhhc--CCeeEEecCcH
Q 027421 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVS 190 (223)
Q Consensus 158 ~~rALDcGAGIGRVTk~LLl~~--f~~VDlVEP~e 190 (223)
...|.|.|||=+++++.+ ... +-.-|||-+++
T Consensus 73 ~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~n~ 106 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAPNP 106 (219)
T ss_dssp TS-EEEES-TT-HHHHH---S---EEEEESS-SST
T ss_pred CEEEEECCCchHHHHHhc-ccCceEEEeeccCCCC
Confidence 468999999999999773 322 33445555544
No 264
>KOG2094 consensus Predicted DNA damage inducible protein [Replication, recombination and repair]
Probab=20.67 E-value=58 Score=32.18 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=23.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCCcccccHHHHhh
Q 027421 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR 178 (223)
Q Consensus 130 vs~~Di~~Sr~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~LLl~ 178 (223)
+-..|-.+...|++.|+.+. =.||||||...|..
T Consensus 267 ~i~~dr~aim~F~kdLPvRk---------------V~GIGrV~E~qLka 300 (490)
T KOG2094|consen 267 VIPNDRIAIMKFMKDLPVRK---------------VSGIGRVTEQQLKA 300 (490)
T ss_pred EecccHHHHHHHHhcCCccc---------------ccchhHHHHHHHHh
Confidence 33455557788888877632 25899999997764
Done!