BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027422
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 133 bits (335), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 115/196 (58%), Gaps = 26/196 (13%)
Query: 43 VLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLESA----A 98
+L A LT FAL G ++G + GA+ GQ TE+GF+ GA +GA++GA+ ++++ ES+
Sbjct: 41 ILSAVLTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWK 100
Query: 99 DGES-----LSKAALLSSLVNGKVFMEWVST------------LETAYREVSDVYDVTGV 141
ES L ++ SL++G++ E + +++ + E+S ++D G
Sbjct: 101 SNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAVDSTFEELSSIFDTGGS 160
Query: 142 KGLSEDMIQKLPECALHSEELIQLD---NEIGCSICLEKFEEGDSARKLPSCGHCFHSEC 198
KGL+ D++ K+P+ + + LD N+ CS+CL+ F+ G++ R LP C H FH C
Sbjct: 161 KGLTGDLVDKIPKIKITGKN--NLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPC 218
Query: 199 VDKWLTRNGSCPVCRE 214
+D WL R+GSCP+CR
Sbjct: 219 IDNWLFRHGSCPMCRR 234
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 113/194 (58%), Gaps = 22/194 (11%)
Query: 43 VLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLESAAD--- 99
++ A LT FAL G ++G + GA+ GQ TE+GF+ GA IGA++GA+ ++++ ES+ D
Sbjct: 46 IISAILTFFFALVGTLLGALTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLDLWK 105
Query: 100 ------GESLSKAALLSSLVNGKVFMEWVST------------LETAYREVSDVYDVTGV 141
G L ++ SL++G++ E + ++TA+ + + ++D G
Sbjct: 106 SDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGGS 165
Query: 142 KGLSEDMIQKLPECALHSEELIQL-DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVD 200
KGL+ D+++K+P+ + +N CS+CL+ F+ G++ R LP C H FH C+D
Sbjct: 166 KGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCID 225
Query: 201 KWLTRNGSCPVCRE 214
WL R+GSCP+CR
Sbjct: 226 NWLLRHGSCPMCRR 239
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 118/202 (58%), Gaps = 30/202 (14%)
Query: 37 IRAMKRVLYAAL-TCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95
+ A+ L++AL T FAL G ++G + GA+ GQ TE+GF+ GA +GA++GA+ ++++ E
Sbjct: 24 VSALLANLFSALFTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFE 83
Query: 96 SA----ADGES-----LSKAALLSSLVNGKVFMEWVST------------LETAYREVSD 134
S+ ES L +++SL++G++ E + +E+ +++ +D
Sbjct: 84 SSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTD 143
Query: 135 VYDVTGVKGLSEDMIQKLPECALH--SEELIQLDNEIGCSICLEKFEEGDSARKLPSCGH 192
++D KGL+ D + ++P+ + S E++ CS+CL+ F+ G++ R LP C H
Sbjct: 144 IFDTAISKGLTGDSLNRIPKVRITDTSPEIVS------CSVCLQDFQVGETVRSLPHCHH 197
Query: 193 CFHSECVDKWLTRNGSCPVCRE 214
FH C+DKWL R+ SCP+CR
Sbjct: 198 MFHLPCIDKWLRRHASCPLCRR 219
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 110/202 (54%), Gaps = 27/202 (13%)
Query: 38 RAMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE-- 95
R + V ALT IFA+ GA G + GA+ G+ + G L GA +GAVAGAI ++++LE
Sbjct: 24 RLIAGVFSGALTGIFAMAGAFTGAVTGAVAGRAAQYGVLRGAALGAVAGAILSVEVLEAS 83
Query: 96 --------SAADGES-------------LSKAALLSSLVNGKVFMEWVSTLETAYREVSD 134
S + G S L L+S+++N + +S + +Y E D
Sbjct: 84 RAYWYLELSGSRGPSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRIS--DVSYEERED 141
Query: 135 VYDVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCF 194
VY +GLS D ++KLP C + S E+++ C+ICL+ + G+ R LP C H F
Sbjct: 142 VYGELEARGLSGDSLRKLP-CYIMSSEMVR-RQVTHCTICLQDIKTGEITRSLPKCDHTF 199
Query: 195 HSECVDKWLTRNGSCPVCRECV 216
H CVDKWL R+GSCP+CR+ V
Sbjct: 200 HLVCVDKWLIRHGSCPICRQAV 221
>sp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23
PE=1 SV=2
Length = 163
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 117 VFMEWVSTLET--AYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSIC 174
+F+ W ST R V VTG KGLS ++K+P+ L EL + C++C
Sbjct: 51 LFLLWCSTRRRIERLRFAEPVKPVTG-KGLSVLELEKIPK--LTGRELAVIARSTECAVC 107
Query: 175 LEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213
LE E G S R +P C H FH C D WL+ + CPVCR
Sbjct: 108 LEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCR 146
>sp|Q9FL42|ATL69_ARATH Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana
GN=ATL69 PE=3 SV=1
Length = 159
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 143 GLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202
GL +I+ P L + N CSICL +E + R +P C HCFH++CVD+W
Sbjct: 66 GLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEW 125
Query: 203 LTRNGSCPVCRE 214
L + +CP+CR
Sbjct: 126 LRTSATCPLCRN 137
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 138 VTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSE 197
V +GL ++I+ LP E + I C++CL +FEE ++ R LP+C H FH +
Sbjct: 89 VVASRGLDPNVIKSLPVFTFSDE---THKDPIECAVCLSEFEESETGRVLPNCQHTFHVD 145
Query: 198 CVDKWLTRNGSCPVCRECV 216
C+D W + +CP+CR V
Sbjct: 146 CIDMWFHSHSTCPLCRSLV 164
>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana
GN=ATL21A PE=3 SV=1
Length = 372
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 137 DVTGVKGLSEDMIQKLPECAL-HSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFH 195
+V GL E +I+ + L S L +++I C ICL ++ ++ R +P C HCFH
Sbjct: 285 EVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFH 344
Query: 196 SECVDKWLTRNGSCPVCRE 214
SEC+D WL +GSCP+CR
Sbjct: 345 SECIDVWLKIHGSCPLCRN 363
>sp|Q9ZV51|ATL56_ARATH RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2
SV=1
Length = 181
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 143 GLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202
GLS ++KLP+ SE E C +C + F +G R LP CGH FH +CVD W
Sbjct: 83 GLSSRFVKKLPQFKF-SEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTW 141
Query: 203 LTRNGSCPVCR 213
L + +CP+CR
Sbjct: 142 LLKASTCPICR 152
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 143 GLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202
GL + I LP L+ I L+ C++CL +F + D R LP C H FH C+D W
Sbjct: 180 GLDQTAIDALP-VFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTW 238
Query: 203 LTRNGSCPVCRECV 216
L N +CP+CR +
Sbjct: 239 LLSNSTCPLCRRSL 252
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 142 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK 201
KGL + ++Q LP+ S E + + C+ICL +F GD R LP CGH FH C+D
Sbjct: 83 KGLKKKVLQSLPKLTF-SPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDT 141
Query: 202 WLTRNGSCPVCRE 214
WL + SCP CR+
Sbjct: 142 WLGSHSSCPSCRQ 154
>sp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana
GN=ATL21C PE=3 SV=1
Length = 366
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 137 DVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHS 196
+V +GL + I+ + L + N I C ICL ++ ++ R +P C HCFH
Sbjct: 286 EVMARRGLDQSTIETFKKMELGESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHV 345
Query: 197 ECVDKWLTRNGSCPVCRE 214
EC+D WL +GSCP+CR
Sbjct: 346 ECIDVWLKIHGSCPLCRN 363
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 143 GLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202
GLS+D+ + LP ++ E I D++ CS+CL ++ + +++PSCGH FH EC+D W
Sbjct: 86 GLSKDIREMLP-VVIYKESFIVKDSQ--CSVCLGDYQAEEKLQQMPSCGHTFHMECIDLW 142
Query: 203 LTRNGSCPVCR 213
LT + +CP+CR
Sbjct: 143 LTSHTTCPLCR 153
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 143 GLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202
G+ +++ +P ++++ + + C +CL + +GD AR LPSC H FH EC+D W
Sbjct: 63 GIKPYVLRSIPIVDFNTKDFKYV---LECVVCLSELADGDKARVLPSCDHWFHVECIDSW 119
Query: 203 LTRNGSCPVCRECVC 217
L N +CP+CR+ VC
Sbjct: 120 LQSNSTCPICRKRVC 134
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 142 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK 201
+ L + ++ K+P S+ + + CS+CL +FEE D R LP CGH FH +C+D
Sbjct: 79 QALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDT 138
Query: 202 WLTRNGSCPVCRECV 216
W +CP+CR V
Sbjct: 139 WFRSRSTCPLCRAPV 153
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 142 KGLSEDMIQKLPECALHSEE-----LIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHS 196
KGL + +Q LP + E + + C+ICL F +G+ R LP CGH FH
Sbjct: 68 KGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHV 127
Query: 197 ECVDKWLTRNGSCPVCRE 214
EC+DKWL SCP CR
Sbjct: 128 ECIDKWLVSRSSCPSCRR 145
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 144 LSEDMIQKLPECALHSEELIQLDNEIG-CSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202
+ + I LP LH + +I L +++ C++CL +F D R LP C H FH EC+D W
Sbjct: 96 IDQSFIDALP--LLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTW 153
Query: 203 LTRNGSCPVCRE 214
L N +CP+CR+
Sbjct: 154 LLTNSTCPLCRD 165
>sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2
SV=2
Length = 185
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 128 AYREVSDVYDVTGV----KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDS 183
A R SD V KGL + +++ LP+ +S + + + C+ICL +F GD
Sbjct: 58 ASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLT-YSPDSPPAEKLVECAICLTEFAAGDE 116
Query: 184 ARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214
R LP CGH FH C+D WL + SCP CR+
Sbjct: 117 LRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQ 147
>sp|P0CH02|AT21B_ARATH Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana
GN=ATL21B PE=3 SV=1
Length = 362
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 137 DVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHS 196
+V +GL + I+K L N I C ICL ++ ++ R +P C HCFH+
Sbjct: 282 EVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHA 341
Query: 197 ECVDKWLTRNGSCPVCRE 214
+C+D WL +GSCP+CR
Sbjct: 342 KCIDVWLKIHGSCPLCRN 359
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 143 GLSEDMIQKLPECAL-HSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK 201
GL E I+ + L S L N++ C ICL ++ ++ R LP C HCFH+EC+D
Sbjct: 298 GLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDA 357
Query: 202 WLTRNGSCPVCR 213
WL + SCPVCR
Sbjct: 358 WLKLHSSCPVCR 369
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 142 KGLSEDMIQKLPECALHSEELI-----QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHS 196
+GL E I+ +P +++ Q N CS+CL +F+E + R +P+C H FH
Sbjct: 100 RGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHI 159
Query: 197 ECVDKWLTRNGSCPVCRECV 216
+C+D WL N +CP+CR V
Sbjct: 160 DCIDIWLQGNANCPLCRTSV 179
>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59
PE=1 SV=1
Length = 225
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 143 GLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202
GLS+D+ + LP ++ E N+ CS+CL ++ + +++PSCGH FH EC+D W
Sbjct: 72 GLSKDIREMLP-IVIYKESFTV--NDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLW 128
Query: 203 LTRNGSCPVCR 213
LT + +CP+CR
Sbjct: 129 LTSHTTCPLCR 139
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 216
CS+CL +FEE D R LP CGH FH +C+D W SCP+CR V
Sbjct: 113 CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 66.2 bits (160), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Query: 141 VKGLSEDMIQKLPECALHSEELIQLDNEIG--CSICLEKFEEGDSARKLPSCGHCFHSEC 198
++GL+++ I L + E +D+E+G CS+C+ + G+ R+LP C H FH C
Sbjct: 603 IRGLTKEQIDNL---STRHYEHNSIDSELGKICSVCISDYVTGNKLRQLP-CMHEFHIHC 658
Query: 199 VDKWLTRNGSCPVCRECV 216
+D+WL+ N +CP+CR+ V
Sbjct: 659 IDRWLSENCTCPICRQPV 676
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 136 YDVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFH 195
++V+ GL E +I K+ C + + CS+CL +F +G+S R LP C H FH
Sbjct: 124 WNVSPPSGLDETLINKITVCKYRRGD--GFVHTTDCSVCLGEFSDGESLRLLPRCSHAFH 181
Query: 196 SECVDKWLTRNGSCPVCR 213
+C+D WL + +CP+CR
Sbjct: 182 QQCIDTWLKSHSNCPLCR 199
>sp|Q9LRB7|EL5_ORYSJ E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica
GN=EL5.1 PE=1 SV=1
Length = 325
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213
+ C++CL + E+G+ AR LP CGH FH+ECVD WL + +CP+CR
Sbjct: 132 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 117 VFMEWVSTLETAYREVS-DVYDVTGVKGLSEDMIQKLPECALHSEELIQLDNEIG---CS 172
++ ++V +A++++S V +GL +I LP ++ + N++ C+
Sbjct: 48 LYAKFVLHRRSAFQDLSFSVVSQPPKRGLDSLVIASLPTF------VVGIKNDVAGTECA 101
Query: 173 ICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213
+CL EE D+AR LP+C H FH CVD WLT +CPVCR
Sbjct: 102 VCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCR 142
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 105 KAALLSSLVNGKVFMEWVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQ 164
K + LSS N S +T R++ ++ + GL + +I LP +E+
Sbjct: 81 KRSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHLHD-SGLDQALIDALP--VFLYKEIKG 137
Query: 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213
C++CL +F E D R LP+C H FH +C+D WL N +CP+CR
Sbjct: 138 TKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 65.5 bits (158), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 216
CS+C+ ++ EG+ RKLP C H +H C+D+WL+ N +CP+CR V
Sbjct: 703 CSVCITEYTEGNKLRKLP-CSHEYHIHCIDRWLSENSTCPICRRAV 747
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 127 TAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARK 186
TA V GL + I+ + L + N I C ICL ++ ++ R
Sbjct: 209 TARNTTQQPRGVVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRC 268
Query: 187 LPSCGHCFHSECVDKWLTRNGSCPVCRE 214
+P C HCFH +C+D+WL + SCPVCR
Sbjct: 269 MPECDHCFHVQCIDEWLKIHSSCPVCRN 296
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 216
CSICL + +GD AR LP C H FH EC+D W + +CP+CR V
Sbjct: 127 CSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 216
C++CL +FEEGD R LP C H FH EC+D+WL + +CP+CR +
Sbjct: 156 CAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAI 201
>sp|Q9M0C3|ATL14_ARATH RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2
SV=1
Length = 176
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 143 GLSEDMIQKLPECALHSEELIQLDNEIG---CSICLEKFEEGDSARKLPSCGHCFHSECV 199
GLS +++LP+ + + +E G C +C++ F +G RKLP CGH FH +CV
Sbjct: 89 GLSPRCVKRLPQF-----KYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCV 143
Query: 200 DKWLTRNGSCPVCRECVCK 218
D WL + +CP+CR+ V +
Sbjct: 144 DLWLIKVSTCPICRDRVYR 162
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 118 FMEWVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQLDN-EIGCSICLE 176
+ + V+ L+ +++ ++D G+ + I LP H + +I L N C++CL
Sbjct: 86 YFDNVTALQGQLQQLFHLHD----SGVDQSFIDTLP--VFHYKSIIGLKNYPFDCAVCLC 139
Query: 177 KFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213
+FE D R LP C H FH +C+D WL + +CP+CR
Sbjct: 140 EFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCR 176
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 142 KGLSEDMIQKLPECALHSE-ELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVD 200
KG+ + ++ P + E L LD E C ICL F G+ R LP C H FH C+D
Sbjct: 107 KGIKKKALRMFPVVSYSPEMNLPGLDEE--CVICLSDFVSGEQLRLLPKCNHGFHVRCID 164
Query: 201 KWLTRNGSCPVCRECV 216
KWL ++ +CP CR C+
Sbjct: 165 KWLQQHLTCPKCRNCL 180
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 103 LSKAALLSSLVNGKVFMEWVSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEEL 162
L K L S + + + + V+ L+ +++ +++D G+ + +I LP H + +
Sbjct: 63 LVKFLLTPSRESREDYFDNVTALQGQLQQLFNLHD----SGVDQSLIDTLP--VFHYKSI 116
Query: 163 IQLD-NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213
+ L + C +CL +FE D R LP C H FH EC+D WL + +CP+CR
Sbjct: 117 VGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCR 168
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 142 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK 201
+GL ++ LP + + NE C ICL FEEG++ + +P CGH FH +CVD
Sbjct: 114 RGLDSQAVRSLP--VYRYTKAAKQRNE-DCVICLSDFEEGETVKVIPHCGHVFHVDCVDT 170
Query: 202 WLTRNGSCPVCR 213
WL+ +CP+CR
Sbjct: 171 WLSSYVTCPLCR 182
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 143 GLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202
GL + I+ LP + L L + CS+CL KFE+ + R LP C H FH C+D+W
Sbjct: 98 GLDKKAIESLPFFRFSA--LKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQW 155
Query: 203 LTRNGSCPVCRECVCKDTD 221
L ++ +CP+CR V + D
Sbjct: 156 LEQHATCPLCRNRVNIEDD 174
>sp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana
GN=ATL71 PE=3 SV=1
Length = 197
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 138 VTGVKGLSEDMIQKLPECALHSEEL-IQLDNEIG----CSICLEKFEEGDSARKLPSCGH 192
V V GL+E++I+ P+ + L E CSICL +++ D R LP C H
Sbjct: 91 VVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNH 150
Query: 193 CFHSECVDKWLTRNGSCPVCR 213
FH CVD WL + +CPVCR
Sbjct: 151 LFHDNCVDPWLRLHPTCPVCR 171
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 137 DVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHS 196
D +GL+++ I L + + ++ CS+C+ ++ EG+ RKLP C H +H
Sbjct: 517 DEDQPRGLTKEQIDNLAMRSFGENDALKT-----CSVCITEYTEGNKLRKLP-CSHEYHV 570
Query: 197 ECVDKWLTRNGSCPVCRECV 216
C+D+WL+ N +CP+CR V
Sbjct: 571 HCIDRWLSENSTCPICRRAV 590
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 142 KGLSEDMIQKLPECALHSEELIQL-DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVD 200
+GL +D+I P + +++ + C+ICL +FE+ ++ R +P C H FH+ C+D
Sbjct: 98 RGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCID 157
Query: 201 KWLTRNGSCPVCR 213
WL+ +CPVCR
Sbjct: 158 VWLSSRSTCPVCR 170
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 137 DVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHS 196
D +GL+++ I L + + ++ CS+C+ ++ EG+ RKLP C H +H
Sbjct: 541 DDDQPRGLTKEQIDNLAMRSFGENDALKT-----CSVCITEYTEGNKLRKLP-CSHEYHV 594
Query: 197 ECVDKWLTRNGSCPVCRECV 216
C+D+WL+ N +CP+CR V
Sbjct: 595 HCIDRWLSENSTCPICRRAV 614
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 137 DVTGVKGLSEDMIQKLPECALHSEELIQLDNEIG--CSICLEKFEEGDSARKLPSCGHCF 194
D ++GL+++ I L + S E +D+E+G CS+C+ + G+ R+LP C H F
Sbjct: 581 DDDPIRGLTKEQIDNL---STRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLP-CLHEF 636
Query: 195 HSECVDKWLTRNGSCPVCRECVCK 218
H C+D+WL+ N +CPVCR V +
Sbjct: 637 HIHCIDRWLSENCTCPVCRRPVLE 660
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 122 VSTLETAYREVSDVYDVTGVKGLSEDMIQKLPECALHSEELIQL----------DNEIGC 171
+ST + R++ ++ + GL + I LP H +E++ C
Sbjct: 87 ISTSDALQRQLQQLFHLND-SGLDQAFIDALP--VFHYKEIVGSAGGGGGNGAAQEPFDC 143
Query: 172 SICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213
++CL +F E D R LP C H FH C+D WL N +CP+CR
Sbjct: 144 AVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCR 185
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTDT 222
+ CS+CL KFE + R LP C H FH C+D+WL ++ +CP+CR+ V + D+
Sbjct: 121 LDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDS 174
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCR 213
C ICLE + GD RKL +C H FH C+D+WLT N SCP+CR
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 137 DVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHS 196
D +GL+++ I L + ++ CS+C+ ++ EG+ RKLP C H +H
Sbjct: 539 DDDQPRGLTKEQIDNLSTRNFGENDALKT-----CSVCITEYTEGNKLRKLP-CSHEYHI 592
Query: 197 ECVDKWLTRNGSCPVCRECV 216
C+D+WL+ N +CP+CR V
Sbjct: 593 HCIDRWLSENSTCPICRRAV 612
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 142 KGLSEDMIQKLPECALHSEELIQL--DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECV 199
+GL +++ P L+S+ Q E+ C+ICL +FE+ ++ R LP C H FH C+
Sbjct: 98 RGLDVSVVETFP-TFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCI 156
Query: 200 DKWLTRNGSCPVCR 213
D WL + +CPVCR
Sbjct: 157 DAWLEAHVTCPVCR 170
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 142 KGLSEDMIQKLPECALHSEELIQLDNE-IGCSICLEKFEEGDSARKLPSCGHCFHSECVD 200
+G+ +D+I+ P + ++ N + C+ICL +FE+ + R +P C H FH+ C+D
Sbjct: 90 RGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCID 149
Query: 201 KWLTRNGSCPVCR 213
+WL+ +CPVCR
Sbjct: 150 EWLSSRSTCPVCR 162
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 216
CS+C+ ++ EG+ RKLP C H +H C+D+WL+ N +CP+CR V
Sbjct: 585 CSVCITEYTEGNKLRKLP-CSHEYHVHCIDRWLSENSTCPICRRAV 629
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,110,979
Number of Sequences: 539616
Number of extensions: 3065960
Number of successful extensions: 13302
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 12725
Number of HSP's gapped (non-prelim): 799
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)