Query 027422
Match_columns 223
No_of_seqs 285 out of 1839
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 1.5E-16 3.2E-21 142.2 5.8 79 140-221 203-282 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 7.9E-16 1.7E-20 98.7 2.1 44 169-213 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.5 2.7E-14 5.9E-19 122.4 5.3 77 142-218 148-228 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.3 1.1E-12 2.4E-17 93.2 3.6 46 167-213 18-73 (73)
5 COG5243 HRD1 HRD ubiquitin lig 99.3 1.4E-12 3E-17 116.4 2.5 51 166-217 285-345 (491)
6 COG5540 RING-finger-containing 99.3 2.3E-12 5.1E-17 112.3 3.9 53 165-218 320-373 (374)
7 PHA02926 zinc finger-like prot 99.2 4.2E-11 9.2E-16 100.7 6.4 59 160-218 162-231 (242)
8 KOG0317 Predicted E3 ubiquitin 99.2 1.7E-11 3.7E-16 106.4 3.8 52 165-220 236-287 (293)
9 PF13920 zf-C3HC4_3: Zinc fing 99.2 2.2E-11 4.7E-16 80.1 3.1 47 168-218 2-49 (50)
10 PLN03208 E3 ubiquitin-protein 99.1 2.2E-11 4.7E-16 101.0 3.3 51 165-219 15-81 (193)
11 PF13923 zf-C3HC4_2: Zinc fing 99.1 9.3E-11 2E-15 73.2 3.1 39 171-212 1-39 (39)
12 cd00162 RING RING-finger (Real 99.1 1.5E-10 3.3E-15 72.7 3.5 44 170-216 1-45 (45)
13 PF12861 zf-Apc11: Anaphase-pr 99.0 1.4E-10 3.1E-15 84.0 3.2 53 166-218 19-83 (85)
14 KOG0823 Predicted E3 ubiquitin 99.0 1.8E-10 3.8E-15 97.4 2.8 52 165-220 44-98 (230)
15 KOG0320 Predicted E3 ubiquitin 99.0 2.2E-10 4.7E-15 93.3 2.8 52 166-219 129-180 (187)
16 PF15227 zf-C3HC4_4: zinc fing 98.9 4.7E-10 1E-14 71.3 2.2 38 171-212 1-42 (42)
17 KOG0802 E3 ubiquitin ligase [P 98.9 3.8E-10 8.3E-15 107.7 2.5 52 166-218 289-342 (543)
18 PF14634 zf-RING_5: zinc-RING 98.9 1.1E-09 2.4E-14 70.2 3.2 44 170-214 1-44 (44)
19 smart00504 Ubox Modified RING 98.9 1.4E-09 2.9E-14 74.3 3.4 47 168-218 1-47 (63)
20 PF00097 zf-C3HC4: Zinc finger 98.9 1.3E-09 2.8E-14 68.4 2.7 39 171-212 1-41 (41)
21 smart00184 RING Ring finger. E 98.8 5.5E-09 1.2E-13 63.2 3.1 38 171-212 1-39 (39)
22 TIGR00599 rad18 DNA repair pro 98.7 1E-08 2.2E-13 94.1 3.6 50 165-218 23-72 (397)
23 COG5574 PEX10 RING-finger-cont 98.6 2.3E-08 5E-13 86.1 2.4 50 167-220 214-265 (271)
24 KOG2164 Predicted E3 ubiquitin 98.6 2.9E-08 6.2E-13 92.3 3.1 48 168-219 186-238 (513)
25 COG5194 APC11 Component of SCF 98.5 1.1E-07 2.3E-12 67.8 2.8 29 189-217 53-81 (88)
26 KOG1493 Anaphase-promoting com 98.4 5.4E-08 1.2E-12 68.7 1.0 51 167-217 19-81 (84)
27 KOG0828 Predicted E3 ubiquitin 98.4 8.5E-08 1.8E-12 88.7 2.0 51 167-218 570-635 (636)
28 PF11793 FANCL_C: FANCL C-term 98.4 4.7E-08 1E-12 68.9 0.2 51 168-218 2-67 (70)
29 PF13445 zf-RING_UBOX: RING-ty 98.3 3.5E-07 7.7E-12 58.3 2.8 38 171-210 1-43 (43)
30 KOG0287 Postreplication repair 98.3 1.2E-07 2.6E-12 84.2 0.9 51 165-219 20-70 (442)
31 KOG1734 Predicted RING-contain 98.3 1.2E-07 2.5E-12 82.0 0.7 50 167-217 223-281 (328)
32 smart00744 RINGv The RING-vari 98.3 3.9E-07 8.5E-12 59.7 3.0 42 170-213 1-49 (49)
33 PF04564 U-box: U-box domain; 98.3 2.6E-07 5.5E-12 65.5 2.2 49 167-219 3-52 (73)
34 KOG2177 Predicted E3 ubiquitin 98.3 2.5E-07 5.5E-12 78.9 2.4 46 165-214 10-55 (386)
35 COG5432 RAD18 RING-finger-cont 98.3 2.6E-07 5.7E-12 80.6 2.1 49 165-217 22-70 (391)
36 COG5219 Uncharacterized conser 98.2 4E-07 8.6E-12 89.7 1.8 53 165-217 1466-1523(1525)
37 KOG4265 Predicted E3 ubiquitin 98.2 6.5E-07 1.4E-11 80.2 2.5 50 166-219 288-338 (349)
38 KOG4172 Predicted E3 ubiquitin 98.2 1.7E-07 3.7E-12 62.1 -1.0 51 168-222 7-59 (62)
39 PF14835 zf-RING_6: zf-RING of 98.2 3.9E-07 8.5E-12 62.6 0.4 48 165-217 4-51 (65)
40 KOG0804 Cytoplasmic Zn-finger 98.1 8.2E-07 1.8E-11 81.5 1.7 49 167-217 174-222 (493)
41 KOG4445 Uncharacterized conser 98.0 8.8E-07 1.9E-11 77.7 -0.0 94 127-221 55-190 (368)
42 KOG1039 Predicted E3 ubiquitin 98.0 2.3E-06 5E-11 77.3 2.6 54 166-219 159-223 (344)
43 KOG2930 SCF ubiquitin ligase, 98.0 2.5E-06 5.4E-11 63.7 2.3 50 168-217 46-108 (114)
44 KOG0311 Predicted E3 ubiquitin 98.0 9.6E-07 2.1E-11 78.9 -1.1 52 165-219 40-92 (381)
45 KOG0978 E3 ubiquitin ligase in 97.9 3.9E-06 8.5E-11 81.4 1.5 52 165-220 640-692 (698)
46 KOG0825 PHD Zn-finger protein 97.8 5.5E-06 1.2E-10 80.5 0.0 50 167-217 122-171 (1134)
47 KOG0297 TNF receptor-associate 97.7 1.8E-05 4E-10 72.9 2.0 54 165-221 18-71 (391)
48 PF11789 zf-Nse: Zinc-finger o 97.5 3.9E-05 8.5E-10 51.8 1.1 42 167-211 10-53 (57)
49 KOG4159 Predicted E3 ubiquitin 97.4 0.00011 2.4E-09 67.7 2.7 49 166-218 82-130 (398)
50 KOG1785 Tyrosine kinase negati 97.3 9.6E-05 2.1E-09 67.4 1.6 48 169-220 370-419 (563)
51 KOG2660 Locus-specific chromos 97.3 8.4E-05 1.8E-09 66.1 0.8 52 165-219 12-63 (331)
52 KOG3970 Predicted E3 ubiquitin 97.2 0.00031 6.6E-09 59.7 3.4 54 165-220 47-108 (299)
53 KOG1814 Predicted E3 ubiquitin 97.1 0.00037 7.9E-09 63.8 3.4 47 167-214 183-237 (445)
54 KOG0826 Predicted E3 ubiquitin 97.1 0.00064 1.4E-08 60.6 4.5 48 166-216 298-345 (357)
55 PF14570 zf-RING_4: RING/Ubox 97.1 0.00053 1.1E-08 44.6 2.7 45 171-216 1-47 (48)
56 KOG1941 Acetylcholine receptor 96.9 0.00028 6E-09 64.3 0.7 47 167-214 364-413 (518)
57 KOG4692 Predicted E3 ubiquitin 96.9 0.0022 4.7E-08 57.9 6.2 48 166-217 420-467 (489)
58 KOG1813 Predicted E3 ubiquitin 96.9 0.00035 7.6E-09 61.4 1.1 46 169-218 242-287 (313)
59 KOG2879 Predicted E3 ubiquitin 96.9 0.00078 1.7E-08 58.7 2.9 49 166-217 237-287 (298)
60 KOG1428 Inhibitor of type V ad 96.8 0.00085 1.8E-08 69.4 3.0 53 164-217 3482-3544(3738)
61 COG5152 Uncharacterized conser 96.8 0.00056 1.2E-08 57.1 1.2 46 168-217 196-241 (259)
62 PHA02862 5L protein; Provision 96.7 0.0012 2.7E-08 52.4 2.9 46 168-217 2-53 (156)
63 KOG1002 Nucleotide excision re 96.6 0.00085 1.8E-08 63.3 1.4 50 166-219 534-588 (791)
64 KOG3039 Uncharacterized conser 96.5 0.0023 4.9E-08 55.2 3.3 54 167-220 220-273 (303)
65 KOG1952 Transcription factor N 96.5 0.0015 3.3E-08 64.5 2.4 50 167-216 190-246 (950)
66 PF12906 RINGv: RING-variant d 96.4 0.002 4.3E-08 41.7 2.0 41 171-212 1-47 (47)
67 KOG1571 Predicted E3 ubiquitin 96.4 0.00095 2.1E-08 60.2 0.5 48 165-219 302-349 (355)
68 PHA02825 LAP/PHD finger-like p 96.4 0.0029 6.3E-08 51.1 3.1 48 166-217 6-59 (162)
69 PHA03096 p28-like protein; Pro 96.4 0.0018 3.9E-08 57.3 1.9 48 169-216 179-236 (284)
70 KOG0801 Predicted E3 ubiquitin 96.3 0.0014 3E-08 53.1 0.7 41 153-196 164-204 (205)
71 PF10367 Vps39_2: Vacuolar sor 96.3 0.0015 3.3E-08 48.6 0.8 33 166-200 76-108 (109)
72 KOG2114 Vacuolar assembly/sort 96.1 0.0062 1.3E-07 60.3 4.0 45 167-217 839-883 (933)
73 KOG4275 Predicted E3 ubiquitin 95.7 0.0017 3.6E-08 57.2 -1.3 43 168-218 300-343 (350)
74 PF04641 Rtf2: Rtf2 RING-finge 95.5 0.013 2.9E-07 51.1 3.6 53 165-218 110-162 (260)
75 PF05883 Baculo_RING: Baculovi 95.5 0.0079 1.7E-07 47.4 1.8 38 168-206 26-69 (134)
76 PF14447 Prok-RING_4: Prokaryo 95.3 0.0088 1.9E-07 39.9 1.4 48 168-221 7-54 (55)
77 PF03854 zf-P11: P-11 zinc fin 95.2 0.0082 1.8E-07 38.8 0.9 45 169-219 3-48 (50)
78 KOG3268 Predicted E3 ubiquitin 95.2 0.013 2.8E-07 48.3 2.2 51 169-219 166-230 (234)
79 KOG1940 Zn-finger protein [Gen 95.2 0.0057 1.2E-07 53.8 0.1 50 167-218 157-207 (276)
80 COG5175 MOT2 Transcriptional r 95.1 0.014 3.1E-07 52.5 2.4 56 167-223 13-70 (480)
81 KOG1100 Predicted E3 ubiquitin 94.9 0.014 3.1E-07 49.4 1.8 43 171-221 161-204 (207)
82 COG5222 Uncharacterized conser 94.9 0.017 3.6E-07 51.2 2.2 43 169-214 275-318 (427)
83 PF13436 Gly-zipper_OmpA: Glyc 94.6 0.016 3.5E-07 44.8 1.3 37 53-90 56-92 (118)
84 COG5236 Uncharacterized conser 94.5 0.03 6.6E-07 50.6 3.0 48 165-216 58-107 (493)
85 KOG2034 Vacuolar sorting prote 94.5 0.019 4.1E-07 57.3 1.8 37 165-203 814-850 (911)
86 PF07800 DUF1644: Protein of u 94.4 0.038 8.3E-07 44.7 3.0 38 167-204 1-47 (162)
87 PF08746 zf-RING-like: RING-li 94.4 0.029 6.3E-07 35.6 1.9 41 171-212 1-43 (43)
88 KOG3002 Zn finger protein [Gen 94.2 0.031 6.7E-07 49.9 2.4 46 167-218 47-92 (299)
89 KOG0827 Predicted E3 ubiquitin 93.8 0.0047 1E-07 56.4 -3.6 51 168-219 196-247 (465)
90 PF14446 Prok-RING_1: Prokaryo 93.6 0.082 1.8E-06 35.2 2.9 41 167-211 4-44 (54)
91 PF13441 Gly-zipper_YMGG: YMGG 93.6 0.027 5.8E-07 36.1 0.6 36 52-88 6-41 (45)
92 KOG0298 DEAD box-containing he 93.3 0.035 7.6E-07 57.4 1.2 50 164-216 1149-1198(1394)
93 KOG1001 Helicase-like transcri 93.0 0.041 8.9E-07 54.3 1.1 44 169-217 455-500 (674)
94 PF13488 Gly-zipper_Omp: Glyci 92.8 0.046 9.9E-07 35.3 0.8 36 54-90 4-39 (46)
95 PF05290 Baculo_IE-1: Baculovi 92.8 0.094 2E-06 41.3 2.6 55 167-221 79-136 (140)
96 PF10272 Tmpp129: Putative tra 92.2 0.19 4.1E-06 46.0 4.2 29 190-218 311-352 (358)
97 KOG3053 Uncharacterized conser 91.7 0.075 1.6E-06 46.2 1.0 53 165-217 17-82 (293)
98 KOG1645 RING-finger-containing 91.4 0.14 3E-06 47.3 2.4 29 188-216 25-55 (463)
99 KOG4362 Transcriptional regula 91.3 0.058 1.3E-06 52.8 -0.1 50 166-219 19-71 (684)
100 KOG2932 E3 ubiquitin ligase in 91.2 0.087 1.9E-06 47.0 1.0 43 170-217 92-134 (389)
101 COG5220 TFB3 Cdk activating ki 91.1 0.091 2E-06 45.3 0.9 50 167-216 9-63 (314)
102 PRK10510 putative outer membra 91.0 0.22 4.9E-06 42.4 3.3 39 52-90 38-78 (219)
103 PF13441 Gly-zipper_YMGG: YMGG 90.7 0.048 1E-06 35.0 -0.8 36 54-90 4-39 (45)
104 KOG2817 Predicted E3 ubiquitin 90.5 0.27 5.9E-06 45.2 3.5 49 167-216 333-384 (394)
105 PF13488 Gly-zipper_Omp: Glyci 89.6 0.096 2.1E-06 33.8 -0.2 35 55-90 1-35 (46)
106 KOG1812 Predicted E3 ubiquitin 89.5 0.17 3.7E-06 46.7 1.4 38 167-205 145-183 (384)
107 PF13436 Gly-zipper_OmpA: Glyc 89.1 0.12 2.7E-06 39.8 0.1 34 55-89 54-87 (118)
108 PF10571 UPF0547: Uncharacteri 89.0 0.22 4.8E-06 28.1 1.1 23 170-194 2-24 (26)
109 PF05433 Rick_17kDa_Anti: Glyc 88.9 0.088 1.9E-06 33.3 -0.7 36 54-91 4-39 (42)
110 PF02891 zf-MIZ: MIZ/SP-RING z 88.6 0.19 4.2E-06 32.8 0.8 43 169-215 3-50 (50)
111 KOG0309 Conserved WD40 repeat- 88.2 0.31 6.7E-06 48.3 2.2 41 169-211 1029-1069(1081)
112 PF07975 C1_4: TFIIH C1-like d 88.1 0.47 1E-05 31.3 2.3 43 171-213 2-50 (51)
113 KOG1609 Protein involved in mR 87.7 0.29 6.3E-06 43.0 1.6 50 168-217 78-134 (323)
114 KOG4185 Predicted E3 ubiquitin 86.6 0.43 9.3E-06 42.0 2.0 31 185-216 23-54 (296)
115 TIGR00622 ssl1 transcription f 85.8 0.82 1.8E-05 35.0 2.9 46 168-213 55-110 (112)
116 KOG3899 Uncharacterized conser 85.1 0.4 8.8E-06 42.5 1.1 29 190-218 325-366 (381)
117 KOG3579 Predicted E3 ubiquitin 84.3 0.49 1.1E-05 41.9 1.2 37 167-207 267-307 (352)
118 KOG0269 WD40 repeat-containing 83.7 0.95 2.1E-05 44.9 3.0 41 169-211 780-820 (839)
119 KOG2068 MOT2 transcription fac 83.7 1 2.2E-05 40.6 3.0 52 168-220 249-301 (327)
120 COG5183 SSM4 Protein involved 83.2 0.82 1.8E-05 45.8 2.4 50 167-217 11-66 (1175)
121 KOG0802 E3 ubiquitin ligase [P 83.1 0.63 1.4E-05 44.8 1.5 47 166-220 477-523 (543)
122 smart00249 PHD PHD zinc finger 82.9 0.79 1.7E-05 28.0 1.5 32 170-202 1-32 (47)
123 KOG3161 Predicted E3 ubiquitin 82.8 0.52 1.1E-05 46.0 0.9 44 168-214 11-54 (861)
124 KOG1829 Uncharacterized conser 82.5 0.46 9.9E-06 46.1 0.4 44 167-214 510-558 (580)
125 PF13719 zinc_ribbon_5: zinc-r 82.4 0.79 1.7E-05 27.9 1.3 27 169-195 3-36 (37)
126 PF13901 DUF4206: Domain of un 81.8 0.97 2.1E-05 38.0 2.1 41 168-214 152-197 (202)
127 PRK11280 hypothetical protein; 81.1 0.72 1.6E-05 37.9 1.0 38 56-93 67-106 (170)
128 KOG3005 GIY-YIG type nuclease 80.8 0.93 2E-05 39.7 1.6 48 169-216 183-242 (276)
129 PF06897 DUF1269: Protein of u 80.5 0.37 8.1E-06 36.3 -0.8 17 55-71 20-36 (102)
130 PRK10540 lipoprotein; Provisio 79.1 1.7 3.8E-05 30.6 2.3 33 55-91 36-68 (72)
131 KOG1815 Predicted E3 ubiquitin 78.1 1.3 2.8E-05 41.6 1.8 37 165-204 67-103 (444)
132 PF07191 zinc-ribbons_6: zinc- 76.2 0.28 6.1E-06 34.4 -2.4 40 169-217 2-41 (70)
133 KOG4718 Non-SMC (structural ma 75.7 1.4 3E-05 37.5 1.2 45 167-214 180-224 (235)
134 KOG2041 WD40 repeat protein [G 75.6 3.4 7.4E-05 41.2 3.9 48 167-218 1130-1186(1189)
135 KOG0825 PHD Zn-finger protein 75.5 1.6 3.5E-05 43.7 1.7 51 167-217 95-154 (1134)
136 PF06906 DUF1272: Protein of u 74.9 4.3 9.4E-05 27.2 3.1 47 168-219 5-54 (57)
137 PF11023 DUF2614: Protein of u 74.7 2.3 5E-05 32.5 2.0 28 187-220 72-99 (114)
138 PF00628 PHD: PHD-finger; Int 74.6 1.6 3.5E-05 27.8 1.1 43 171-214 2-50 (51)
139 COG3133 SlyB Outer membrane li 74.6 0.92 2E-05 36.0 -0.2 39 50-90 61-99 (154)
140 PF01363 FYVE: FYVE zinc finge 74.6 1.4 3.1E-05 30.0 0.9 37 167-203 8-44 (69)
141 PF06750 DiS_P_DiS: Bacterial 72.7 3.8 8.3E-05 30.1 2.8 39 167-218 32-70 (92)
142 PF13717 zinc_ribbon_4: zinc-r 71.3 2.8 6.1E-05 25.3 1.5 27 169-195 3-36 (36)
143 KOG1812 Predicted E3 ubiquitin 70.9 3.6 7.9E-05 38.0 2.8 68 144-212 280-351 (384)
144 cd00065 FYVE FYVE domain; Zinc 70.7 3.5 7.5E-05 26.8 2.0 36 169-204 3-38 (57)
145 KOG3113 Uncharacterized conser 70.6 3.8 8.2E-05 35.8 2.7 52 167-220 110-161 (293)
146 PF06897 DUF1269: Protein of u 70.6 1.7 3.8E-05 32.6 0.5 36 53-89 1-36 (102)
147 PRK05978 hypothetical protein; 70.2 3 6.6E-05 33.5 1.9 29 186-219 35-65 (148)
148 KOG3039 Uncharacterized conser 68.6 3.2 6.9E-05 36.2 1.8 34 167-204 42-75 (303)
149 PF05818 TraT: Enterobacterial 67.9 3.1 6.6E-05 35.5 1.5 34 55-90 88-122 (215)
150 KOG3842 Adaptor protein Pellin 67.7 5 0.00011 36.2 2.9 53 167-220 340-417 (429)
151 KOG2807 RNA polymerase II tran 67.3 4.7 0.0001 36.5 2.6 47 167-214 329-375 (378)
152 PRK10510 putative outer membra 67.1 2 4.4E-05 36.5 0.3 35 56-90 38-74 (219)
153 TIGR03789 pdsO proteobacterial 66.0 1.6 3.4E-05 37.9 -0.6 12 78-89 62-73 (239)
154 PLN02720 complex II 65.0 2.3 5.1E-05 33.3 0.3 42 51-94 67-113 (140)
155 smart00064 FYVE Protein presen 64.8 5.1 0.00011 27.2 1.9 37 168-204 10-46 (68)
156 PF04710 Pellino: Pellino; In 62.5 2.8 6E-05 38.8 0.3 45 167-215 276-337 (416)
157 PF10497 zf-4CXXC_R1: Zinc-fin 60.4 11 0.00024 28.4 3.2 48 167-214 6-69 (105)
158 KOG2066 Vacuolar assembly/sort 59.8 3.3 7.1E-05 41.4 0.3 44 167-212 783-830 (846)
159 PF04423 Rad50_zn_hook: Rad50 59.7 3 6.4E-05 27.3 -0.0 11 208-218 22-32 (54)
160 PRK10457 hypothetical protein; 59.1 9.7 0.00021 27.5 2.6 50 45-94 28-77 (82)
161 KOG4185 Predicted E3 ubiquitin 59.0 2.5 5.5E-05 37.1 -0.6 49 167-215 206-265 (296)
162 PF05605 zf-Di19: Drought indu 58.9 4.1 8.9E-05 26.6 0.6 39 168-217 2-42 (54)
163 PF14311 DUF4379: Domain of un 57.7 7.8 0.00017 25.3 1.8 23 189-212 33-55 (55)
164 PRK15361 pathogenicity island 57.6 9.5 0.00021 31.8 2.6 36 38-73 92-127 (195)
165 COG4803 Predicted membrane pro 57.3 6.9 0.00015 31.6 1.7 22 53-74 79-100 (170)
166 smart00132 LIM Zinc-binding do 57.0 10 0.00023 21.9 2.1 38 170-217 1-38 (39)
167 KOG0824 Predicted E3 ubiquitin 56.2 4.4 9.5E-05 36.2 0.5 48 167-217 104-151 (324)
168 COG5109 Uncharacterized conser 56.2 12 0.00027 33.7 3.2 48 166-214 334-384 (396)
169 KOG1538 Uncharacterized conser 55.4 5.8 0.00013 39.4 1.1 37 183-219 1043-1079(1081)
170 cd00350 rubredoxin_like Rubred 55.0 7.4 0.00016 22.9 1.2 21 189-215 6-26 (33)
171 PF06844 DUF1244: Protein of u 54.8 7.5 0.00016 27.0 1.3 12 193-204 11-22 (68)
172 PF07649 C1_3: C1-like domain; 54.3 11 0.00024 21.4 1.9 29 170-199 2-30 (30)
173 PF10439 Bacteriocin_IIc: Bact 53.6 21 0.00045 24.4 3.4 8 38-45 28-35 (65)
174 smart00647 IBR In Between Ring 53.2 3.8 8.3E-05 27.0 -0.3 21 182-202 38-58 (64)
175 smart00531 TFIIE Transcription 51.6 14 0.00031 29.2 2.7 16 206-221 123-138 (147)
176 COG1545 Predicted nucleic-acid 50.0 8 0.00017 30.6 1.0 25 184-216 29-53 (140)
177 PF09723 Zn-ribbon_8: Zinc rib 47.8 4.5 9.8E-05 25.2 -0.6 25 189-214 10-34 (42)
178 PF14569 zf-UDP: Zinc-binding 47.6 30 0.00064 24.8 3.4 51 167-217 8-62 (80)
179 PF04216 FdhE: Protein involve 47.5 3 6.5E-05 36.8 -2.0 49 167-215 171-220 (290)
180 PRK09430 djlA Dna-J like membr 47.2 7.3 0.00016 34.2 0.4 34 39-75 3-36 (267)
181 PF04710 Pellino: Pellino; In 45.4 7 0.00015 36.2 0.0 51 167-218 327-402 (416)
182 PF14169 YdjO: Cold-inducible 44.6 12 0.00025 25.4 1.0 16 205-220 38-53 (59)
183 COG4980 GvpP Gas vesicle prote 44.5 12 0.00026 28.8 1.2 23 73-95 5-27 (115)
184 TIGR02865 spore_II_E stage II 43.2 29 0.00063 35.0 4.0 33 40-72 177-214 (764)
185 PRK11677 hypothetical protein; 42.7 5.4 0.00012 31.5 -1.0 25 51-75 4-28 (134)
186 COG1916 Uncharacterized homolo 42.2 33 0.00072 31.6 3.8 59 2-65 321-380 (388)
187 TIGR00261 traB pheromone shutd 41.8 25 0.00054 32.6 3.0 58 3-65 314-372 (380)
188 PLN02189 cellulose synthase 41.4 24 0.00053 36.7 3.1 51 167-217 33-87 (1040)
189 PF02318 FYVE_2: FYVE-type zin 41.4 15 0.00032 28.0 1.3 47 167-214 53-102 (118)
190 PF05191 ADK_lid: Adenylate ki 41.3 6.5 0.00014 23.8 -0.6 32 186-219 3-34 (36)
191 PF12732 YtxH: YtxH-like prote 41.3 14 0.00031 25.6 1.1 19 75-93 1-19 (74)
192 KOG4323 Polycomb-like PHD Zn-f 40.1 8.5 0.00018 36.4 -0.3 50 167-216 167-225 (464)
193 COG3134 Predicted outer membra 39.6 16 0.00034 29.5 1.1 41 54-94 71-113 (179)
194 PRK04023 DNA polymerase II lar 39.2 19 0.00041 37.4 1.9 47 167-219 625-676 (1121)
195 PRK11280 hypothetical protein; 38.0 19 0.00041 29.6 1.4 44 49-94 68-111 (170)
196 TIGR03789 pdsO proteobacterial 37.9 14 0.0003 32.0 0.7 16 55-70 61-76 (239)
197 KOG4608 Uncharacterized conser 37.9 21 0.00045 31.1 1.7 34 54-90 166-199 (270)
198 KOG1815 Predicted E3 ubiquitin 37.4 11 0.00024 35.4 -0.0 40 167-206 225-268 (444)
199 KOG2979 Protein involved in DN 37.3 18 0.0004 31.6 1.3 41 168-211 176-218 (262)
200 KOG2113 Predicted RNA binding 37.1 22 0.00049 32.1 1.9 44 168-217 343-387 (394)
201 KOG1729 FYVE finger containing 36.7 14 0.0003 33.0 0.5 51 167-217 167-225 (288)
202 PF09889 DUF2116: Uncharacteri 36.1 19 0.00041 24.4 1.0 16 205-220 2-17 (59)
203 COG5151 SSL1 RNA polymerase II 36.0 28 0.00061 31.5 2.3 47 168-214 362-418 (421)
204 PF13832 zf-HC5HC2H_2: PHD-zin 35.8 39 0.00086 24.9 2.8 34 167-202 54-88 (110)
205 KOG1356 Putative transcription 35.8 13 0.00029 37.5 0.3 47 167-215 228-280 (889)
206 PLN02436 cellulose synthase A 35.4 34 0.00075 35.8 3.1 51 167-217 35-89 (1094)
207 PF07282 OrfB_Zn_ribbon: Putat 35.3 27 0.00059 23.5 1.7 34 167-200 27-62 (69)
208 PRK02935 hypothetical protein; 35.2 28 0.0006 26.4 1.8 18 203-220 83-100 (110)
209 PF06937 EURL: EURL protein; 34.8 34 0.00073 30.2 2.5 43 168-210 30-74 (285)
210 PF05818 TraT: Enterobacterial 34.3 18 0.00039 30.9 0.8 36 53-88 90-128 (215)
211 KOG4451 Uncharacterized conser 34.2 30 0.00064 30.0 2.1 27 194-220 251-277 (286)
212 PF13771 zf-HC5HC2H: PHD-like 33.8 39 0.00084 23.9 2.4 34 166-201 34-68 (90)
213 COG4239 ABC-type uncharacteriz 33.4 37 0.0008 30.4 2.6 40 32-71 129-169 (341)
214 PF00412 LIM: LIM domain; Int 33.3 30 0.00065 22.1 1.6 14 169-182 27-40 (58)
215 TIGR01562 FdhE formate dehydro 33.0 13 0.00028 33.4 -0.3 47 167-214 183-232 (305)
216 COG3492 Uncharacterized protei 32.9 22 0.00047 26.3 0.9 11 194-204 43-53 (104)
217 PF14353 CpXC: CpXC protein 32.8 26 0.00057 26.8 1.5 12 169-180 2-13 (128)
218 PLN02638 cellulose synthase A 32.5 41 0.00088 35.3 3.1 51 167-217 16-70 (1079)
219 smart00834 CxxC_CXXC_SSSS Puta 31.8 14 0.0003 22.2 -0.2 12 205-216 25-36 (41)
220 KOG2113 Predicted RNA binding 31.7 15 0.00032 33.3 -0.2 46 167-216 135-182 (394)
221 COG4803 Predicted membrane pro 31.0 5.5 0.00012 32.2 -2.7 14 55-68 60-73 (170)
222 PF10083 DUF2321: Uncharacteri 30.8 17 0.00036 29.5 0.0 45 172-219 8-52 (158)
223 PF10146 zf-C4H2: Zinc finger- 30.0 41 0.00089 28.9 2.3 27 194-220 196-222 (230)
224 smart00734 ZnF_Rad18 Rad18-lik 30.0 24 0.00052 19.6 0.6 9 208-216 3-11 (26)
225 COG3813 Uncharacterized protei 29.9 34 0.00074 24.2 1.5 25 191-217 28-52 (84)
226 PRK03564 formate dehydrogenase 29.9 17 0.00036 32.8 -0.1 47 167-214 186-234 (309)
227 PRK01343 zinc-binding protein; 29.9 38 0.00082 22.8 1.6 9 208-216 11-19 (57)
228 TIGR02098 MJ0042_CXXC MJ0042 f 29.9 38 0.00083 20.1 1.5 11 170-180 4-14 (38)
229 PF03107 C1_2: C1 domain; Int 29.8 30 0.00064 19.7 1.0 29 170-199 2-30 (30)
230 PF11981 DUF3482: Domain of un 29.1 15 0.00033 32.7 -0.5 12 77-88 173-184 (292)
231 PLN02248 cellulose synthase-li 28.7 48 0.001 34.9 2.8 30 189-218 149-178 (1135)
232 PF05052 MerE: MerE protein; 28.3 1.4E+02 0.0031 21.1 4.3 44 12-57 24-68 (75)
233 PLN02400 cellulose synthase 28.3 41 0.0009 35.2 2.3 51 167-217 35-89 (1085)
234 COG4171 SapC ABC-type antimicr 27.8 38 0.00082 29.4 1.7 55 32-93 84-143 (296)
235 KOG3352 Cytochrome c oxidase, 27.5 32 0.00069 27.7 1.1 26 169-195 112-144 (153)
236 COG5627 MMS21 DNA repair prote 27.5 31 0.00067 30.0 1.1 40 168-210 189-230 (275)
237 PLN02915 cellulose synthase A 27.4 54 0.0012 34.3 2.9 51 167-217 14-68 (1044)
238 PRK06266 transcription initiat 27.4 66 0.0014 26.5 3.0 17 204-220 134-150 (178)
239 PRK13731 conjugal transfer sur 27.2 36 0.00078 29.6 1.5 10 56-65 119-128 (243)
240 COG4068 Uncharacterized protei 27.0 35 0.00075 23.2 1.0 17 205-221 7-23 (64)
241 PF06946 Phage_holin_5: Phage 26.3 18 0.00039 26.8 -0.5 32 57-88 41-73 (93)
242 PF03966 Trm112p: Trm112p-like 26.3 46 0.001 22.6 1.6 11 168-178 7-17 (68)
243 PRK14714 DNA polymerase II lar 25.7 30 0.00066 36.8 0.8 45 169-217 668-720 (1337)
244 PF01485 IBR: IBR domain; Int 25.6 10 0.00022 24.8 -1.8 34 169-202 19-58 (64)
245 PF07863 CtnDOT_TraJ: Homologu 25.6 59 0.0013 22.7 2.0 27 14-43 9-35 (68)
246 COG0068 HypF Hydrogenase matur 25.4 41 0.00088 33.7 1.6 49 168-216 101-183 (750)
247 PF12773 DZR: Double zinc ribb 25.4 65 0.0014 20.2 2.1 12 207-218 30-41 (50)
248 KOG1729 FYVE finger containing 25.2 15 0.00032 32.8 -1.3 37 169-206 215-251 (288)
249 PLN02195 cellulose synthase A 25.1 83 0.0018 32.7 3.8 52 167-218 5-60 (977)
250 smart00109 C1 Protein kinase C 24.7 64 0.0014 19.5 2.0 35 167-201 10-44 (49)
251 PRK00420 hypothetical protein; 24.6 55 0.0012 25.1 1.9 25 168-192 23-48 (112)
252 PF03119 DNA_ligase_ZBD: NAD-d 24.5 35 0.00076 19.4 0.6 12 208-219 1-12 (28)
253 PF13240 zinc_ribbon_2: zinc-r 24.5 13 0.00028 20.2 -1.1 7 171-177 2-8 (23)
254 COG3133 SlyB Outer membrane li 24.4 45 0.00097 26.6 1.4 35 54-90 61-95 (154)
255 PF04226 Transgly_assoc: Trans 24.2 31 0.00068 22.1 0.4 41 52-94 3-43 (48)
256 TIGR02605 CxxC_CxxC_SSSS putat 23.7 23 0.0005 22.6 -0.3 26 188-214 9-34 (52)
257 PRK11827 hypothetical protein; 23.7 30 0.00064 23.5 0.3 15 203-217 5-19 (60)
258 PF10235 Cript: Microtubule-as 23.7 47 0.001 24.4 1.3 39 168-219 44-82 (90)
259 PF03884 DUF329: Domain of unk 23.3 36 0.00077 22.9 0.6 11 208-218 4-14 (57)
260 KOG3726 Uncharacterized conser 23.3 50 0.0011 32.9 1.8 43 169-214 655-697 (717)
261 TIGR00373 conserved hypothetic 23.1 83 0.0018 25.3 2.8 17 205-221 127-143 (158)
262 PF09986 DUF2225: Uncharacteri 22.8 47 0.001 28.0 1.4 15 167-181 4-18 (214)
263 PF06295 DUF1043: Protein of u 22.8 14 0.00029 28.8 -1.8 22 53-74 2-23 (128)
264 COG4956 Integral membrane prot 22.8 2.7E+02 0.0058 25.4 6.1 43 49-91 7-52 (356)
265 KOG4021 Mitochondrial ribosoma 22.2 47 0.001 28.1 1.2 22 196-217 97-119 (239)
266 KOG4577 Transcription factor L 22.1 23 0.00049 31.7 -0.7 44 168-221 92-135 (383)
267 COG1397 DraG ADP-ribosylglycoh 21.9 38 0.00081 30.6 0.6 18 55-72 9-26 (314)
268 PF11240 DUF3042: Protein of u 21.5 36 0.00078 22.7 0.3 12 80-91 15-26 (54)
269 PTZ00303 phosphatidylinositol 21.4 53 0.0011 33.6 1.5 35 169-203 461-500 (1374)
270 COG2835 Uncharacterized conser 21.3 44 0.00095 22.7 0.7 12 208-219 10-21 (60)
271 KOG2789 Putative Zn-finger pro 21.2 40 0.00086 31.5 0.6 33 168-202 74-106 (482)
272 KOG2907 RNA polymerase I trans 21.1 70 0.0015 24.6 1.8 38 181-218 71-114 (116)
273 PF01988 VIT1: VIT family; In 21.1 1.4E+02 0.0031 24.9 4.0 15 140-154 90-104 (213)
274 COG1645 Uncharacterized Zn-fin 20.8 54 0.0012 25.8 1.2 25 168-192 28-52 (131)
275 COG0777 AccD Acetyl-CoA carbox 20.7 89 0.0019 27.8 2.6 30 169-198 29-61 (294)
276 PRK00418 DNA gyrase inhibitor; 20.6 57 0.0012 22.3 1.1 12 206-217 6-17 (62)
277 PF14319 Zn_Tnp_IS91: Transpos 20.6 61 0.0013 24.5 1.4 32 167-204 41-76 (111)
278 KOG2071 mRNA cleavage and poly 20.5 42 0.00091 32.7 0.7 35 167-202 512-556 (579)
279 KOG3799 Rab3 effector RIM1 and 20.5 24 0.00053 28.0 -0.8 50 165-215 62-116 (169)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.5e-16 Score=142.16 Aligned_cols=79 Identities=37% Similarity=0.812 Sum_probs=67.3
Q ss_pred CCCCCCHHHHhcCCccccchhhhhhcccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCC-Cccccccccc
Q 027422 140 GVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGS-CPVCRECVCK 218 (223)
Q Consensus 140 ~~~g~s~~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~s-CPvCR~~v~~ 218 (223)
+.+.+.++.++++|...+......+ ....|+||+|+|+.++.+|.|| |+|.||..||++||.++++ ||+||+++..
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~--~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDED--ATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccC--CCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 5577899999999999887654211 2269999999999999999999 9999999999999998865 9999999886
Q ss_pred CCC
Q 027422 219 DTD 221 (223)
Q Consensus 219 ~~~ 221 (223)
..+
T Consensus 280 ~~~ 282 (348)
T KOG4628|consen 280 DSG 282 (348)
T ss_pred CCC
Confidence 643
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.57 E-value=7.9e-16 Score=98.73 Aligned_cols=44 Identities=61% Similarity=1.427 Sum_probs=40.4
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR 213 (223)
.+|+||++++..++.+..++ |+|.||.+||.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999999999998 999999999999999999999998
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.49 E-value=2.7e-14 Score=122.40 Aligned_cols=77 Identities=27% Similarity=0.624 Sum_probs=60.6
Q ss_pred CCCCHHHHhcCCccccchhhhhhcccCcccccccccccCCCc----eeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 142 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDS----ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 142 ~g~s~~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~f~~~~~----~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
++.+...++.+|.+....+...+...+.+|+||++++.+++. ...+++|+|.||..||.+|++.+.+||+||.++.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 455888889999886554444344567899999999876542 3456579999999999999999999999999875
Q ss_pred c
Q 027422 218 K 218 (223)
Q Consensus 218 ~ 218 (223)
.
T Consensus 228 ~ 228 (238)
T PHA02929 228 S 228 (238)
T ss_pred E
Confidence 3
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.32 E-value=1.1e-12 Score=93.16 Aligned_cols=46 Identities=39% Similarity=0.972 Sum_probs=36.0
Q ss_pred cCcccccccccccCC----------CceeecCCCCccccHHHHHHHhhcCCCCcccc
Q 027422 167 NEIGCSICLEKFEEG----------DSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213 (223)
Q Consensus 167 ~~~~C~ICle~f~~~----------~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR 213 (223)
.+..|+||++++.++ ..+... .|+|.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 345699999999443 233334 4999999999999999999999998
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.4e-12 Score=116.43 Aligned_cols=51 Identities=37% Similarity=1.085 Sum_probs=43.4
Q ss_pred ccCccccccccc-ccCC---------CceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 166 DNEIGCSICLEK-FEEG---------DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 166 ~~~~~C~ICle~-f~~~---------~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
.+|..|.||+++ ++.+ .+.++|| |||++|.+|++.|++++++||+||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 467899999999 4443 1347788 9999999999999999999999999954
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.3e-12 Score=112.28 Aligned_cols=53 Identities=45% Similarity=1.042 Sum_probs=48.0
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhh-cCCCCccccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCK 218 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~ 218 (223)
.....+|+|||++|...+.++.+| |.|.||..|+++|+. -+..||+||.++++
T Consensus 320 a~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 344589999999999999999999 999999999999998 66789999999976
No 7
>PHA02926 zinc finger-like protein; Provisional
Probab=99.18 E-value=4.2e-11 Score=100.70 Aligned_cols=59 Identities=29% Similarity=0.676 Sum_probs=44.6
Q ss_pred hhhhhcccCcccccccccccCC-----CceeecCCCCccccHHHHHHHhhcC------CCCccccccccc
Q 027422 160 EELIQLDNEIGCSICLEKFEEG-----DSARKLPSCGHCFHSECVDKWLTRN------GSCPVCRECVCK 218 (223)
Q Consensus 160 ~~~~~~~~~~~C~ICle~f~~~-----~~~~~Lp~CgH~FH~~CI~~WL~~~------~sCPvCR~~v~~ 218 (223)
++..+...+.+|+||++..... .....|++|+|.||..||.+|.+.+ .+||+||.....
T Consensus 162 e~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 162 EDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred HHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 3334456789999999986432 2345677899999999999998753 459999998753
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.7e-11 Score=106.39 Aligned_cols=52 Identities=31% Similarity=0.775 Sum_probs=46.0
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
.+...+|.+||+..+++..+ +|||+||+.||..|...+..||+||.+..+..
T Consensus 236 ~~a~~kC~LCLe~~~~pSaT----pCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSAT----PCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCCCcC----cCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 34668999999998887766 69999999999999999999999999988764
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.16 E-value=2.2e-11 Score=80.11 Aligned_cols=47 Identities=38% Similarity=0.950 Sum_probs=39.2
Q ss_pred CcccccccccccCCCceeecCCCCcc-ccHHHHHHHhhcCCCCccccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
+..|.||++...+ +..+| |||. ||..|+.+|++.+..||+||+++..
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 5689999998665 56666 9999 9999999999999999999999863
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.15 E-value=2.2e-11 Score=101.01 Aligned_cols=51 Identities=31% Similarity=0.806 Sum_probs=41.6
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhc----------------CCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR----------------NGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~----------------~~sCPvCR~~v~~~ 219 (223)
..++.+|+||++.++++..+ .|||.||..||.+|+.. +..||+||.++...
T Consensus 15 ~~~~~~CpICld~~~dPVvT----~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVT----LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCCcEEc----CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 44678999999999876443 59999999999999852 35799999998653
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.07 E-value=9.3e-11 Score=73.19 Aligned_cols=39 Identities=46% Similarity=1.217 Sum_probs=32.1
Q ss_pred cccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccc
Q 027422 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVC 212 (223)
Q Consensus 171 C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvC 212 (223)
|+||++++.++ +..++ |||.||.+|+.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998883 23454 99999999999999999999998
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.05 E-value=1.5e-10 Score=72.68 Aligned_cols=44 Identities=48% Similarity=1.190 Sum_probs=35.9
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhc-CCCCccccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECV 216 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-~~sCPvCR~~v 216 (223)
+|+||++.+.. ..... +|+|.||..|+.+|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~~~--~~~~~-~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLL-PCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEec-CCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999833 33334 49999999999999997 77899999864
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.04 E-value=1.4e-10 Score=84.04 Aligned_cols=53 Identities=34% Similarity=0.728 Sum_probs=39.9
Q ss_pred ccCcccccccccccCCCc---------eeecCCCCccccHHHHHHHhhc---CCCCccccccccc
Q 027422 166 DNEIGCSICLEKFEEGDS---------ARKLPSCGHCFHSECVDKWLTR---NGSCPVCRECVCK 218 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~---------~~~Lp~CgH~FH~~CI~~WL~~---~~sCPvCR~~v~~ 218 (223)
.+++.|.||...|+..-. ......|+|.||..||.+|+.. ++.||+||++..-
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 357889999988873221 1123369999999999999985 4679999998754
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.8e-10 Score=97.40 Aligned_cols=52 Identities=35% Similarity=0.750 Sum_probs=43.5
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC---CCCcccccccccCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN---GSCPVCRECVCKDT 220 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~---~sCPvCR~~v~~~~ 220 (223)
.....+|.|||+.-+++..+ -|||.||+.||.+||..+ +.||+||..|..++
T Consensus 44 ~~~~FdCNICLd~akdPVvT----lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVT----LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCCCEEe----ecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 34678999999998887666 599999999999999744 45999999987654
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.2e-10 Score=93.27 Aligned_cols=52 Identities=31% Similarity=0.785 Sum_probs=43.1
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
+.-..|||||+.+.....+ -.+|||+||..||..-++....||+||+.|..+
T Consensus 129 ~~~~~CPiCl~~~sek~~v--sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPV--STKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhcccc--ccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3458899999999875532 127999999999999999999999999877643
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.93 E-value=4.7e-10 Score=71.32 Aligned_cols=38 Identities=39% Similarity=0.984 Sum_probs=29.9
Q ss_pred cccccccccCCCceeecCCCCccccHHHHHHHhhcC----CCCccc
Q 027422 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVC 212 (223)
Q Consensus 171 C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~----~sCPvC 212 (223)
|+||++.|.++..+ +|||.||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l----~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSL----PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-----SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcccc----CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999997776 699999999999999754 359987
No 17
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.8e-10 Score=107.74 Aligned_cols=52 Identities=38% Similarity=1.044 Sum_probs=45.4
Q ss_pred ccCcccccccccccCCCc--eeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 166 DNEIGCSICLEKFEEGDS--ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~--~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
..+..|+||+|++..+.. .+++| |+|+||..|+.+|++++++||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 457899999999998755 67787 99999999999999999999999995543
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.90 E-value=1.1e-09 Score=70.16 Aligned_cols=44 Identities=39% Similarity=0.970 Sum_probs=37.3
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
+|+||++.+.+......++ |||+||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 5999999995555666675 9999999999999866788999985
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.88 E-value=1.4e-09 Score=74.27 Aligned_cols=47 Identities=30% Similarity=0.627 Sum_probs=40.7
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
+..||||.+.+.++.. +| |||+|+..||.+|++.+..||+|+.++..
T Consensus 1 ~~~Cpi~~~~~~~Pv~---~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 1 EFLCPISLEVMKDPVI---LP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CcCCcCCCCcCCCCEE---CC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 3579999999998643 44 99999999999999999999999998853
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.87 E-value=1.3e-09 Score=68.40 Aligned_cols=39 Identities=51% Similarity=1.247 Sum_probs=33.2
Q ss_pred cccccccccCCCceeecCCCCccccHHHHHHHhh--cCCCCccc
Q 027422 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--RNGSCPVC 212 (223)
Q Consensus 171 C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~--~~~sCPvC 212 (223)
|+||++.+.++. ..++ |+|.||..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988865 3454 999999999999999 55679998
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.77 E-value=5.5e-09 Score=63.22 Aligned_cols=38 Identities=50% Similarity=1.328 Sum_probs=31.6
Q ss_pred cccccccccCCCceeecCCCCccccHHHHHHHhh-cCCCCccc
Q 027422 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVC 212 (223)
Q Consensus 171 C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvC 212 (223)
|+||++... ....+| |+|.||..|+++|+. .+..||+|
T Consensus 1 C~iC~~~~~---~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 889988833 455565 999999999999998 66779987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=1e-08 Score=94.05 Aligned_cols=50 Identities=34% Similarity=0.739 Sum_probs=43.5
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
.+....|+||++.|..+.. + +|+|.||..||..|+..+..||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~Pvi---t-pCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVL---T-SCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCccC---C-CCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 4567899999999988653 4 499999999999999998899999998764
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.3e-08 Score=86.09 Aligned_cols=50 Identities=32% Similarity=0.759 Sum_probs=42.2
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHH-HhhcCCC-CcccccccccCC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK-WLTRNGS-CPVCRECVCKDT 220 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~-WL~~~~s-CPvCR~~v~~~~ 220 (223)
.+..|+||++....+..+ .|||+||..||.. |-.++.. ||+||+.+.+..
T Consensus 214 ~d~kC~lC~e~~~~ps~t----~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCT----PCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccc----cccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 478899999988776655 5999999999999 9877766 999999887653
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.9e-08 Score=92.27 Aligned_cols=48 Identities=31% Similarity=0.771 Sum_probs=40.1
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhc-----CCCCcccccccccC
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-----NGSCPVCRECVCKD 219 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-----~~sCPvCR~~v~~~ 219 (223)
+..||||+++...+..+ .|||+||..||.+++.. ...||+||..|...
T Consensus 186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 78999999987776655 69999999999999863 35799999988753
No 25
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.47 E-value=1.1e-07 Score=67.83 Aligned_cols=29 Identities=38% Similarity=1.047 Sum_probs=27.3
Q ss_pred CCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 189 SCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 189 ~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
.|.|.||..||.+||..++.||++|+...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 59999999999999999999999999864
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.4e-08 Score=68.74 Aligned_cols=51 Identities=37% Similarity=0.829 Sum_probs=36.9
Q ss_pred cCcccccccccccCCCceeec---------CCCCccccHHHHHHHhhc---CCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKL---------PSCGHCFHSECVDKWLTR---NGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~L---------p~CgH~FH~~CI~~WL~~---~~sCPvCR~~v~ 217 (223)
+++.|-||.-.|...-.--++ -.|.|.||..||.+|+.. +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 455888888877643222222 258999999999999974 456999999764
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.5e-08 Score=88.72 Aligned_cols=51 Identities=29% Similarity=0.710 Sum_probs=39.5
Q ss_pred cCcccccccccccCCCc--------------eeecCCCCccccHHHHHHHhh-cCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDS--------------ARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~--------------~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~ 218 (223)
....|+|||++..--.+ -...| |.|+||..|+.+|+. .+-.||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45789999998753211 11345 999999999999999 56699999999875
No 28
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.42 E-value=4.7e-08 Score=68.87 Aligned_cols=51 Identities=33% Similarity=0.805 Sum_probs=24.5
Q ss_pred Cccccccccccc-CCCc-eeecC--CCCccccHHHHHHHhhcC-----------CCCccccccccc
Q 027422 168 EIGCSICLEKFE-EGDS-ARKLP--SCGHCFHSECVDKWLTRN-----------GSCPVCRECVCK 218 (223)
Q Consensus 168 ~~~C~ICle~f~-~~~~-~~~Lp--~CgH~FH~~CI~~WL~~~-----------~sCPvCR~~v~~ 218 (223)
+.+|.||++.+. .++. ....+ +|++.||..|+.+|+... +.||.|+.+|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 568999999876 3222 23333 799999999999999721 249999998864
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.34 E-value=3.5e-07 Score=58.33 Aligned_cols=38 Identities=39% Similarity=0.979 Sum_probs=22.3
Q ss_pred cccccccccCCC-ceeecCCCCccccHHHHHHHhhcC----CCCc
Q 027422 171 CSICLEKFEEGD-SARKLPSCGHCFHSECVDKWLTRN----GSCP 210 (223)
Q Consensus 171 C~ICle~f~~~~-~~~~Lp~CgH~FH~~CI~~WL~~~----~sCP 210 (223)
|+||.+ |.+++ ....|| |||+|+.+|++++++.. -.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75544 457787 99999999999999844 3576
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.34 E-value=1.2e-07 Score=84.22 Aligned_cols=51 Identities=35% Similarity=0.770 Sum_probs=44.4
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
.+.-..|-||.++|..+..+ +|+|.||.-||..+|..++.||.|+.++.+.
T Consensus 20 lD~lLRC~IC~eyf~ip~it----pCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMIT----PCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred hHHHHHHhHHHHHhcCceec----cccchHHHHHHHHHhccCCCCCceecccchh
Confidence 34567899999999986655 5999999999999999999999999988653
No 31
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-07 Score=82.00 Aligned_cols=50 Identities=30% Similarity=0.802 Sum_probs=42.2
Q ss_pred cCcccccccccccCCC-------ceeecCCCCccccHHHHHHHh--hcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGD-------SARKLPSCGHCFHSECVDKWL--TRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~-------~~~~Lp~CgH~FH~~CI~~WL--~~~~sCPvCR~~v~ 217 (223)
++..|+||-+.+...+ .+-+|. |+|+||..||.-|- ..+++||.|+..+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 5678999998887665 667775 99999999999995 46789999999875
No 32
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.34 E-value=3.9e-07 Score=59.75 Aligned_cols=42 Identities=26% Similarity=0.869 Sum_probs=32.2
Q ss_pred ccccccccccCCCceeecCCCC-----ccccHHHHHHHhhcC--CCCcccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCG-----HCFHSECVDKWLTRN--GSCPVCR 213 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~Cg-----H~FH~~CI~~WL~~~--~sCPvCR 213 (223)
.|.||++ ..+++.....| |. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 33444455677 74 899999999999644 5899995
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.33 E-value=2.6e-07 Score=65.48 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=38.5
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhc-CCCCcccccccccC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 219 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~~ 219 (223)
+++.|+|+.+-+.++..+ ++||+|...||.+|+.. +..||+||+++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~----~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVIL----PSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEE----TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeC----CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 467899999999997766 59999999999999998 88999999988754
No 34
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.5e-07 Score=78.89 Aligned_cols=46 Identities=48% Similarity=0.975 Sum_probs=40.1
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
..++..|+||++.|..+ ..+| |+|.||..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 45789999999999998 5565 9999999999999886667999993
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.31 E-value=2.6e-07 Score=80.63 Aligned_cols=49 Identities=39% Similarity=0.820 Sum_probs=43.0
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
.+....|-||-+.+..+..+ .|||.||.-||...|..++.||+||.+..
T Consensus 22 LDs~lrC~IC~~~i~ip~~T----tCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 22 LDSMLRCRICDCRISIPCET----TCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred chhHHHhhhhhheeecceec----ccccchhHHHHHHHhcCCCCCccccccHH
Confidence 34567899999999887666 69999999999999999999999998754
No 36
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.24 E-value=4e-07 Score=89.69 Aligned_cols=53 Identities=26% Similarity=0.822 Sum_probs=40.6
Q ss_pred cccCcccccccccccCCC---ceeecCCCCccccHHHHHHHhhcC--CCCcccccccc
Q 027422 165 LDNEIGCSICLEKFEEGD---SARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~---~~~~Lp~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~ 217 (223)
....++|+||+..+..-+ .-.++|.|.|.||..|+.+|++.. ..||+||.+++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 346689999998765211 224566799999999999999854 57999998765
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.5e-07 Score=80.15 Aligned_cols=50 Identities=30% Similarity=0.768 Sum_probs=42.8
Q ss_pred ccCcccccccccccCCCceeecCCCCc-cccHHHHHHHhhcCCCCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH-~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
++..+|.|||.+-.+ +..|| |.| ..|..|.+..--+++.||+||+++..-
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 446899999998666 77888 999 799999999877899999999998653
No 38
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.7e-07 Score=62.14 Aligned_cols=51 Identities=29% Similarity=0.651 Sum_probs=39.6
Q ss_pred CcccccccccccCCCceeecCCCCc-cccHHHHHHHhh-cCCCCcccccccccCCCC
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLT-RNGSCPVCRECVCKDTDT 222 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH-~FH~~CI~~WL~-~~~sCPvCR~~v~~~~~~ 222 (223)
+.+|.||++...+...- .||| ..|..|-.+.++ .+..||+||.++.+--.+
T Consensus 7 ~dECTICye~pvdsVlY----tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkT 59 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLY----TCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKT 59 (62)
T ss_pred ccceeeeccCcchHHHH----HcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHh
Confidence 47899998876664433 5999 689999877666 788999999998765443
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.18 E-value=3.9e-07 Score=62.58 Aligned_cols=48 Identities=31% Similarity=0.755 Sum_probs=26.5
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
.+.-..|++|.+.++.+..+. .|.|+||..||.+-+.. .||+|+.+.-
T Consensus 4 le~lLrCs~C~~~l~~pv~l~---~CeH~fCs~Ci~~~~~~--~CPvC~~Paw 51 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLG---GCEHIFCSSCIRDCIGS--ECPVCHTPAW 51 (65)
T ss_dssp HHHTTS-SSS-S--SS-B------SSS--B-TTTGGGGTTT--B-SSS--B-S
T ss_pred HHHhcCCcHHHHHhcCCceec---cCccHHHHHHhHHhcCC--CCCCcCChHH
Confidence 345678999999999876554 79999999999886553 4999998864
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.14 E-value=8.2e-07 Score=81.48 Aligned_cols=49 Identities=37% Similarity=0.924 Sum_probs=39.2
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
+-.+|||||+.+.....-.....|.|.||-.|+.+| ...+||+||.-..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 557899999999876533222259999999999999 6788999997655
No 41
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=98.05 E-value=8.8e-07 Score=77.67 Aligned_cols=94 Identities=23% Similarity=0.471 Sum_probs=64.1
Q ss_pred hhhHhhhhhhcccCCCCCCHHHHhcCCccc-----------cch-------hh-hhhcccCcccccccccccCCCceeec
Q 027422 127 TAYREVSDVYDVTGVKGLSEDMIQKLPECA-----------LHS-------EE-LIQLDNEIGCSICLEKFEEGDSARKL 187 (223)
Q Consensus 127 ~~~~e~~d~~~~~~~~g~s~~~i~~lp~~~-----------~~~-------~~-~~~~~~~~~C~ICle~f~~~~~~~~L 187 (223)
..|...+..+...+++|++...++.+-..- +.. +. ..+.....+|.|||--|.++....+.
T Consensus 55 ~gYP~esPtvtl~nPRGl~d~~~~~i~~~~~~iikq~~g~pii~~lie~~~e~LT~nn~p~gqCvICLygfa~~~~ft~T 134 (368)
T KOG4445|consen 55 EGYPAESPTVTLSNPRGLGDPEFREIQRQIQEIIKQNSGMPIICQLIEHCSEFLTENNHPNGQCVICLYGFASSPAFTVT 134 (368)
T ss_pred CCCCCcCCceEecCCCCCCcHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHcccCCCCCCceEEEEEeecCCCceeee
Confidence 345555555666677777777665543210 000 00 11123567899999999999988888
Q ss_pred CCCCccccHHHHHHHhh-----------------------cCCCCcccccccccCCC
Q 027422 188 PSCGHCFHSECVDKWLT-----------------------RNGSCPVCRECVCKDTD 221 (223)
Q Consensus 188 p~CgH~FH~~CI~~WL~-----------------------~~~sCPvCR~~v~~~~~ 221 (223)
+ |-|+||..|+.++|. .+..||+||..+..+++
T Consensus 135 ~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 135 A-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 7 999999999998874 11249999999987765
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.3e-06 Score=77.26 Aligned_cols=54 Identities=37% Similarity=0.792 Sum_probs=42.3
Q ss_pred ccCcccccccccccCCC----ceeecCCCCccccHHHHHHHh--hc-----CCCCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEGD----SARKLPSCGHCFHSECVDKWL--TR-----NGSCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~----~~~~Lp~CgH~FH~~CI~~WL--~~-----~~sCPvCR~~v~~~ 219 (223)
..+..|.||++...... ..+.+|+|.|.||..||.+|- ++ .+.||.||......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 35789999999876543 234568899999999999997 44 47899999876543
No 43
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.5e-06 Score=63.72 Aligned_cols=50 Identities=24% Similarity=0.643 Sum_probs=36.7
Q ss_pred Cccccccccccc-------------CCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 168 EIGCSICLEKFE-------------EGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~-------------~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
-..|+||...+. ..+-+..--.|.|-||..||.+||+.++.||+|.++-.
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 467888865332 22223333369999999999999999999999988743
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=9.6e-07 Score=78.94 Aligned_cols=52 Identities=31% Similarity=0.662 Sum_probs=42.5
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhc-CCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~~ 219 (223)
...+..|+|||+-++.. ...+.|.|.||.+||..-++. .+.||.||+.+...
T Consensus 40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 45678999999998873 344589999999999999874 57899999987643
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.9e-06 Score=81.42 Aligned_cols=52 Identities=27% Similarity=0.732 Sum_probs=43.2
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhh-cCCCCcccccccccCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKDT 220 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~~ 220 (223)
......||+|-..+++...+ +|+|.||..|+.+-+. ++..||.|...+..++
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~----kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVIT----KCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred HHhceeCCCccCchhhHHHH----hcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 34668999999888874444 7999999999999987 6788999999887653
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.77 E-value=5.5e-06 Score=80.48 Aligned_cols=50 Identities=28% Similarity=0.518 Sum_probs=43.1
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
....|++|+..+.+.......+ |+|+||..|++.|-+...+||+||..+.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 4568999999988876665565 9999999999999999999999998764
No 47
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.68 E-value=1.8e-05 Score=72.92 Aligned_cols=54 Identities=30% Similarity=0.759 Sum_probs=46.3
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTD 221 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~~ 221 (223)
.+++..|++|...+.++... . .|||.||..|+.+|+..+..||.||+++....+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhc
Confidence 35678999999999998774 2 599999999999999999999999998765543
No 48
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.50 E-value=3.9e-05 Score=51.83 Aligned_cols=42 Identities=33% Similarity=0.808 Sum_probs=28.3
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhc--CCCCcc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR--NGSCPV 211 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~--~~sCPv 211 (223)
....|||.+..|++|..-+ .|+|+|-.+.|.+|+.+ ...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~---~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSK---KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEES---SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcC---CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4689999999999875543 69999999999999944 345998
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00011 Score=67.69 Aligned_cols=49 Identities=31% Similarity=0.795 Sum_probs=43.0
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
..+.+|.||+.-+..+... +|||.||..||++-+.....||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~t----pcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVT----PCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccc----cccccccHHHHHHHhccCCCCccccccccc
Confidence 4678999999998886666 599999999999999988999999998864
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.31 E-value=9.6e-05 Score=67.36 Aligned_cols=48 Identities=29% Similarity=0.726 Sum_probs=37.8
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhc--CCCCcccccccccCC
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR--NGSCPVCRECVCKDT 220 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~--~~sCPvCR~~v~~~~ 220 (223)
.-|.||-+.= ..++.-| |||..|..|+..|-.. .+.||.||.+|...+
T Consensus 370 eLCKICaend---KdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccC---CCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 4599996653 4477777 9999999999999753 468999999986543
No 51
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.27 E-value=8.4e-05 Score=66.14 Aligned_cols=52 Identities=27% Similarity=0.657 Sum_probs=45.1
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
......|.+|--+|.+..++. .|-|.||..||.+.|.....||.|...+...
T Consensus 12 ~n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 345689999999998876664 7999999999999999999999999888754
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00031 Score=59.71 Aligned_cols=54 Identities=28% Similarity=0.647 Sum_probs=44.0
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC--------CCCcccccccccCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--------GSCPVCRECVCKDT 220 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--------~sCPvCR~~v~~~~ 220 (223)
.+.+..|..|-..+..++.+| |- |-|.||+.|+++|-.+- -.||.|.++|.+..
T Consensus 47 sDY~pNC~LC~t~La~gdt~R-Lv-CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTTR-LV-CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred cCCCCCCceeCCccccCccee-eh-hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 445678999999999988876 43 99999999999997532 35999999987654
No 53
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00037 Score=63.79 Aligned_cols=47 Identities=28% Similarity=0.635 Sum_probs=38.2
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC--------CCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--------GSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--------~sCPvCR~ 214 (223)
.-..|.||+++.........+| |+|+||..|...++..+ -.||-+.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4578999999988778888998 99999999999998622 34876543
No 54
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00064 Score=60.60 Aligned_cols=48 Identities=23% Similarity=0.489 Sum_probs=38.8
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 216 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v 216 (223)
.+...||||+....++..+. --|-+||..||.++++.++.||+=..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 35688999999988765542 3589999999999999999999855443
No 55
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.06 E-value=0.00053 Score=44.62 Aligned_cols=45 Identities=31% Similarity=0.685 Sum_probs=23.2
Q ss_pred cccccccccCC-CceeecCCCCccccHHHHHHHhh-cCCCCccccccc
Q 027422 171 CSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECV 216 (223)
Q Consensus 171 C~ICle~f~~~-~~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v 216 (223)
||+|.+++... ....-. +|++..|..|..+-++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 79999998332 233333 5899999999999886 578899999875
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.92 E-value=0.00028 Score=64.27 Aligned_cols=47 Identities=38% Similarity=0.889 Sum_probs=38.1
Q ss_pred cCcccccccccccC-CCceeecCCCCccccHHHHHHHhhcC--CCCccccc
Q 027422 167 NEIGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~-~~~~~~Lp~CgH~FH~~CI~~WL~~~--~sCPvCR~ 214 (223)
-+..|-.|=+.+-. ++.+..|| |.|+||..|+...|.++ .+||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45679999887643 45677788 99999999999999755 57999994
No 57
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0022 Score=57.92 Aligned_cols=48 Identities=25% Similarity=0.492 Sum_probs=40.2
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
.++..||||+-. +......| |+|.-|..||.+.+.+.+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 467889999654 44455556 9999999999999999999999999876
No 58
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00035 Score=61.42 Aligned_cols=46 Identities=28% Similarity=0.556 Sum_probs=41.9
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
+.|-||.++|..+... +|+|.||..|..+-+.....|++|.+.+..
T Consensus 242 f~c~icr~~f~~pVvt----~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVT----KCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhh----cCCceeehhhhccccccCCcceeccccccc
Confidence 5699999999998888 799999999999999999999999988754
No 59
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00078 Score=58.73 Aligned_cols=49 Identities=24% Similarity=0.525 Sum_probs=39.5
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC--CCCcccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVC 217 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~ 217 (223)
..+.+|++|-+....|-... +|+|+||..||..-.... .+||.|-.++.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~---~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIG---KCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeec---cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 46789999988877665552 499999999999876544 68999999887
No 60
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.80 E-value=0.00085 Score=69.37 Aligned_cols=53 Identities=30% Similarity=0.677 Sum_probs=41.7
Q ss_pred hcccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC----------CCCcccccccc
Q 027422 164 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----------GSCPVCRECVC 217 (223)
Q Consensus 164 ~~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~----------~sCPvCR~~v~ 217 (223)
+.+.+..|-||+.+--......+|. |+|+||..|..+-|++. -+||+|++++.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3456788999998876666677786 99999999998766533 25999999875
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.75 E-value=0.00056 Score=57.10 Aligned_cols=46 Identities=28% Similarity=0.667 Sum_probs=40.7
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
.+.|.||-.+|+.+..+ .|||.||..|...-++....|-+|-....
T Consensus 196 PF~C~iCKkdy~spvvt----~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVT----ECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhh----hcchhHHHHHHHHHhccCCcceecchhhc
Confidence 35899999999998877 79999999999999999999999977543
No 62
>PHA02862 5L protein; Provisional
Probab=96.72 E-value=0.0012 Score=52.41 Aligned_cols=46 Identities=22% Similarity=0.564 Sum_probs=33.7
Q ss_pred CcccccccccccCCCceeecC-CC---CccccHHHHHHHhh--cCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLP-SC---GHCFHSECVDKWLT--RNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp-~C---gH~FH~~CI~~WL~--~~~sCPvCR~~v~ 217 (223)
+..|-||.++-++. . -| .| -..-|.+|+.+|++ ++..||+||.+..
T Consensus 2 ~diCWIC~~~~~e~--~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER--N--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC--c--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 35799999985433 2 23 24 25789999999997 4457999999864
No 63
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.61 E-value=0.00085 Score=63.30 Aligned_cols=50 Identities=30% Similarity=0.718 Sum_probs=41.0
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhh-----cCCCCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-----~~~sCPvCR~~v~~~ 219 (223)
.++..|-+|-++-++.... +|.|.||.-|+.++.. .+-+||+|...+.-+
T Consensus 534 k~~~~C~lc~d~aed~i~s----~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIES----SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhh----hhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 4678999999988887666 7999999999998875 346799998877644
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.0023 Score=55.17 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=47.7
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
....||||.+.+.+......|.+|||+|+.+|.++.++....||+|-.++.+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 456799999999998877777789999999999999999999999999887653
No 65
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.50 E-value=0.0015 Score=64.48 Aligned_cols=50 Identities=30% Similarity=0.789 Sum_probs=39.5
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC-------CCccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-------SCPVCRECV 216 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~-------sCPvCR~~v 216 (223)
...+|.||++.+.....+-....|-|+||..||.+|-+... .||.|+...
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 45789999999988776655557889999999999986421 399998443
No 66
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.45 E-value=0.002 Score=41.72 Aligned_cols=41 Identities=37% Similarity=0.977 Sum_probs=26.4
Q ss_pred cccccccccCCCceeecC-CCC---ccccHHHHHHHhh--cCCCCccc
Q 027422 171 CSICLEKFEEGDSARKLP-SCG---HCFHSECVDKWLT--RNGSCPVC 212 (223)
Q Consensus 171 C~ICle~f~~~~~~~~Lp-~Cg---H~FH~~CI~~WL~--~~~sCPvC 212 (223)
|-||+++-.+.. .-..| .|. ...|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779998877655 23344 233 3789999999997 45679987
No 67
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.00095 Score=60.20 Aligned_cols=48 Identities=31% Similarity=0.599 Sum_probs=33.8
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
......|.||+++..+ ...+| |||+-| |..-. +.-.+||+||+.+...
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~~~ 349 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIRLV 349 (355)
T ss_pred cCCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHHHH
Confidence 3456789999999887 44455 999855 55543 2335599999987643
No 68
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.39 E-value=0.0029 Score=51.10 Aligned_cols=48 Identities=23% Similarity=0.653 Sum_probs=34.8
Q ss_pred ccCcccccccccccCCCceeecC-CCCc---cccHHHHHHHhhcC--CCCcccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLP-SCGH---CFHSECVDKWLTRN--GSCPVCRECVC 217 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp-~CgH---~FH~~CI~~WL~~~--~sCPvCR~~v~ 217 (223)
..+..|-||.++-.+ .. -| .|.. .-|.+|+++|+..+ .+||+|+++..
T Consensus 6 ~~~~~CRIC~~~~~~--~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDV--VT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCC--cc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 356799999988542 22 34 3444 56999999999744 56999999764
No 69
>PHA03096 p28-like protein; Provisional
Probab=96.36 E-value=0.0018 Score=57.34 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=34.8
Q ss_pred cccccccccccCC----CceeecCCCCccccHHHHHHHhhcC------CCCccccccc
Q 027422 169 IGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRN------GSCPVCRECV 216 (223)
Q Consensus 169 ~~C~ICle~f~~~----~~~~~Lp~CgH~FH~~CI~~WL~~~------~sCPvCR~~v 216 (223)
..|.||++..... ..-..|++|.|.||..||..|-... +.||.||..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 6899999976643 2345688999999999999997532 2355555444
No 70
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0014 Score=53.11 Aligned_cols=41 Identities=34% Similarity=0.736 Sum_probs=32.1
Q ss_pred CccccchhhhhhcccCcccccccccccCCCceeecCCCCccccH
Q 027422 153 PECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHS 196 (223)
Q Consensus 153 p~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~ 196 (223)
|+..|+++. -.++.-+|.||||+++.++++.+|| |-.+||+
T Consensus 164 PrlsYNdDV--L~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDV--LKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccch--hcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 444454433 2345679999999999999999999 9999996
No 71
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.27 E-value=0.0015 Score=48.58 Aligned_cols=33 Identities=27% Similarity=0.734 Sum_probs=27.1
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHH
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVD 200 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~ 200 (223)
.++..|++|-..+.. ......| |||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 466789999999988 4455677 99999999975
No 72
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.0062 Score=60.34 Aligned_cols=45 Identities=24% Similarity=0.623 Sum_probs=35.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
....|..|--.++-|...- .|+|.||.+|.. .....||-|+.+..
T Consensus 839 q~skCs~C~~~LdlP~VhF---~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHF---LCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred eeeeecccCCccccceeee---ecccHHHHHhhc---cCcccCCccchhhh
Confidence 3468999988887765332 599999999999 56778999998543
No 73
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0017 Score=57.24 Aligned_cols=43 Identities=28% Similarity=0.801 Sum_probs=32.4
Q ss_pred CcccccccccccCCCceeecCCCCc-cccHHHHHHHhhcCCCCccccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH-~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
+.-|.||++...+ -..|+ ||| +-|..|-.. -+.||+||+.|..
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHHH
Confidence 6679999887665 34454 999 678888654 3489999998753
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.52 E-value=0.013 Score=51.09 Aligned_cols=53 Identities=19% Similarity=0.485 Sum_probs=41.9
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
......|||...+|........+-+|||+|...++.+. .....||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 34668999999999665555555569999999999997 235679999998764
No 75
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.48 E-value=0.0079 Score=47.38 Aligned_cols=38 Identities=21% Similarity=0.717 Sum_probs=29.3
Q ss_pred CcccccccccccCCCceeecCCCC------ccccHHHHHHHhhcC
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCG------HCFHSECVDKWLTRN 206 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~Cg------H~FH~~CI~~WL~~~ 206 (223)
..+|.||++.+.+..-+..++ |+ |.||.+|+.+|-+.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 679999999998844444455 65 899999999994433
No 76
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.34 E-value=0.0088 Score=39.93 Aligned_cols=48 Identities=31% Similarity=0.609 Sum_probs=33.6
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCCC
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTD 221 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~~ 221 (223)
+..|-.|... +..-..+| |+|+.+..|.+-+ +-+.||+|-+++...+.
T Consensus 7 ~~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ceeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCCC
Confidence 3445555433 23344566 9999999998764 67889999999876653
No 77
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.21 E-value=0.0082 Score=38.82 Aligned_cols=45 Identities=22% Similarity=0.603 Sum_probs=26.1
Q ss_pred cccccccccccCCCceeecCCCC-ccccHHHHHHHhhcCCCCcccccccccC
Q 027422 169 IGCSICLEKFEEGDSARKLPSCG-HCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~Cg-H~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
..|.-|+-. +...+ .|. |+.|..|+...+.+...||+|..+++..
T Consensus 3 ~nCKsCWf~--~k~Li----~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 3 YNCKSCWFA--NKGLI----KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ----SS-S----SSEE----E-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ccChhhhhc--CCCee----eecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 346666543 33344 585 9999999999999999999999998764
No 78
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.013 Score=48.34 Aligned_cols=51 Identities=29% Similarity=0.731 Sum_probs=34.0
Q ss_pred cccccccccccCCCce---eecCCCCccccHHHHHHHhhc-----C------CCCcccccccccC
Q 027422 169 IGCSICLEKFEEGDSA---RKLPSCGHCFHSECVDKWLTR-----N------GSCPVCRECVCKD 219 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~---~~Lp~CgH~FH~~CI~~WL~~-----~------~sCPvCR~~v~~~ 219 (223)
..|-||+.+--++... .---+||.-||.-|+..||+. + ..||.|..++.-+
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 4577776544333221 111169999999999999972 1 2499999998654
No 79
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.15 E-value=0.0057 Score=53.81 Aligned_cols=50 Identities=32% Similarity=0.717 Sum_probs=39.7
Q ss_pred cCcccccccccccCCCc-eeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDS-ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~-~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
.+..||||.+.+..... +..++ |+|..|..|.......+-.||+|.. +.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred ccCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 34569999998776654 34454 9999999999999888889999988 543
No 80
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.07 E-value=0.014 Score=52.49 Aligned_cols=56 Identities=27% Similarity=0.562 Sum_probs=39.5
Q ss_pred cCcccccccccccCCCc-eeecCCCCccccHHHHHHHhh-cCCCCcccccccccCCCCC
Q 027422 167 NEIGCSICLEKFEEGDS-ARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKDTDTW 223 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~-~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~~~~~ 223 (223)
++..||.|++++...+. ..-+| ||-..|.-|...--. -+..||-||+...+.+-.|
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~ 70 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRY 70 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccceeE
Confidence 45569999999876553 33455 998888888665422 4578999999887665443
No 81
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.014 Score=49.38 Aligned_cols=43 Identities=30% Similarity=0.750 Sum_probs=32.7
Q ss_pred cccccccccCCCceeecCCCCc-cccHHHHHHHhhcCCCCcccccccccCCC
Q 027422 171 CSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLTRNGSCPVCRECVCKDTD 221 (223)
Q Consensus 171 C~ICle~f~~~~~~~~Lp~CgH-~FH~~CI~~WL~~~~sCPvCR~~v~~~~~ 221 (223)
|-.|-+ .+..+..+| |.| .+|..|-.. -..||+|+.+......
T Consensus 161 Cr~C~~---~~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s~~~ 204 (207)
T KOG1100|consen 161 CRKCGE---REATVLLLP-CRHLCLCGICDES----LRICPICRSPKTSSVE 204 (207)
T ss_pred ceecCc---CCceEEeec-ccceEeccccccc----CccCCCCcChhhceee
Confidence 888854 456688888 998 899999665 4569999988766544
No 82
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.87 E-value=0.017 Score=51.24 Aligned_cols=43 Identities=30% Similarity=0.781 Sum_probs=35.4
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhh-cCCCCccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRE 214 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~ 214 (223)
..|+.|-.-+.++..+ |.|+|.||.+||..-|. ....||.|.+
T Consensus 275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccC---ccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899998887776554 57999999999997765 5678999976
No 83
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=94.62 E-value=0.016 Score=44.77 Aligned_cols=37 Identities=38% Similarity=0.496 Sum_probs=25.7
Q ss_pred hhcccchhhhccccCCccccccccccchhhhhHHHHHH
Q 027422 53 ALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITA 90 (223)
Q Consensus 53 a~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s 90 (223)
+++|+++||++|++.|- ..+|.+.|+++|++.|++..
T Consensus 56 a~~GA~~GA~~Ga~~G~-~~~ga~~GAa~Ga~~G~~~g 92 (118)
T PF13436_consen 56 AAIGAAAGAAIGAIIGG-NGRGAAIGAAAGAAVGAAAG 92 (118)
T ss_pred HHHHHHHHHHHHhhcCC-CccchHHHHHHHHHHHHHhh
Confidence 44666666666676666 44577778888888877765
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.52 E-value=0.03 Score=50.58 Aligned_cols=48 Identities=27% Similarity=0.700 Sum_probs=36.7
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHH--hhcCCCCccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW--LTRNGSCPVCRECV 216 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~W--L~~~~sCPvCR~~v 216 (223)
.+++..|-||-..+.- ...+| |+|..|--|..+. |-.++.||+||...
T Consensus 58 DEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3456789999776543 45666 9999999998764 45788999999864
No 85
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=0.019 Score=57.28 Aligned_cols=37 Identities=30% Similarity=0.753 Sum_probs=29.0
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHh
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL 203 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL 203 (223)
.+.+.+|.+|...+.... ....| |||.||.+|+.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~p-F~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKP-FYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcCc-ceeee-ccchHHHHHHHHHH
Confidence 457789999998887643 33455 99999999998764
No 86
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.39 E-value=0.038 Score=44.67 Aligned_cols=38 Identities=24% Similarity=0.556 Sum_probs=24.7
Q ss_pred cCcccccccccccCCCceeecC---C-----CCc-cccHHHHHHHhh
Q 027422 167 NEIGCSICLEKFEEGDSARKLP---S-----CGH-CFHSECVDKWLT 204 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp---~-----CgH-~FH~~CI~~WL~ 204 (223)
++..|||||+...+...+.--. . |+- .-|..|++++-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 3568999999877755442110 1 442 468899999854
No 87
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.35 E-value=0.029 Score=35.56 Aligned_cols=41 Identities=27% Similarity=0.824 Sum_probs=22.2
Q ss_pred cccccccccCCCceeecCCCCccccHHHHHHHhhcCC--CCccc
Q 027422 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG--SCPVC 212 (223)
Q Consensus 171 C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~--sCPvC 212 (223)
|.+|.+....+..=.. +.|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~-~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSN-RDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCC-CccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 5677666555443211 14888999999999998665 79987
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.20 E-value=0.031 Score=49.91 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=36.6
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
+-.+||||.+.+..+..- . +=||+-|..|-.+ .++.||.||.++..
T Consensus 47 ~lleCPvC~~~l~~Pi~Q--C-~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQ--C-DNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccccee--c-CCCcEehhhhhhh---hcccCCcccccccc
Confidence 558999999999887655 1 2379999999764 68889999999873
No 89
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.0047 Score=56.38 Aligned_cols=51 Identities=31% Similarity=0.677 Sum_probs=42.2
Q ss_pred CcccccccccccCC-CceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 168 EIGCSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 168 ~~~C~ICle~f~~~-~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
...|+||...++.. +....+ .|||.+|..|+.+||.....||.||+.+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~-~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAI-VCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 36799999888765 344444 4999999999999999999999999988754
No 90
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.59 E-value=0.082 Score=35.22 Aligned_cols=41 Identities=34% Similarity=0.852 Sum_probs=34.3
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPV 211 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPv 211 (223)
....|++|-+.|.+++.+.+.|.|+-.+|.+|.++ ...|-.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 45689999999998889999999999999999765 455544
No 91
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=93.56 E-value=0.027 Score=36.14 Aligned_cols=36 Identities=42% Similarity=0.527 Sum_probs=20.5
Q ss_pred HhhcccchhhhccccCCccccccccccchhhhhHHHH
Q 027422 52 FALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAI 88 (223)
Q Consensus 52 ~a~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav 88 (223)
-|+.|+..|+++|++.| ....|-+-|++.|+.+|++
T Consensus 6 GA~iGA~~GA~iG~~~g-~~~~GA~iGA~~Ga~~G~~ 41 (45)
T PF13441_consen 6 GAAIGAAAGAVIGAIIG-NGGKGAAIGAAAGALAGAA 41 (45)
T ss_pred HHHHHHHHHHHHHHhhC-CCcccchhhhhhhhhhhhh
Confidence 45567777777777777 2223444455555555543
No 92
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.28 E-value=0.035 Score=57.42 Aligned_cols=50 Identities=28% Similarity=0.757 Sum_probs=40.2
Q ss_pred hcccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccc
Q 027422 164 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 216 (223)
Q Consensus 164 ~~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v 216 (223)
+......|+||++.+..-..+. .|+|.+|..|...|+..+..||+|+...
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 3445678999999988433222 6999999999999999999999998544
No 93
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.97 E-value=0.041 Score=54.27 Aligned_cols=44 Identities=32% Similarity=0.755 Sum_probs=34.2
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcC--CCCcccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVC 217 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~ 217 (223)
..|.||++ ...... . .|+|.||..|+.+-+... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~i---t-~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFI---T-RCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-ccccee---e-cccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 333333 3 599999999999988743 35999998764
No 94
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=92.79 E-value=0.046 Score=35.26 Aligned_cols=36 Identities=36% Similarity=0.502 Sum_probs=19.9
Q ss_pred hcccchhhhccccCCccccccccccchhhhhHHHHHH
Q 027422 54 LGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITA 90 (223)
Q Consensus 54 ~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s 90 (223)
+.|+++|+++|...+ .+..|.+-|+++|++.|+...
T Consensus 4 ~iGA~~Ga~iG~~~g-~~~~ga~iGa~vGa~~G~~ig 39 (46)
T PF13488_consen 4 AIGAAAGAAIGAATG-GPGKGAAIGAAVGAAVGAAIG 39 (46)
T ss_pred HHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHH
Confidence 344555555555444 223566666677777766654
No 95
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.78 E-value=0.094 Score=41.27 Aligned_cols=55 Identities=22% Similarity=0.468 Sum_probs=40.7
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh---cCCCCcccccccccCCC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVCRECVCKDTD 221 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~---~~~sCPvCR~~v~~~~~ 221 (223)
.-.+|-||.|.-.+...+.--.-||-..|.-|-...++ .++.||+|+++....+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 45789999987666554433224899999999887665 56889999999876543
No 96
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.16 E-value=0.19 Score=45.98 Aligned_cols=29 Identities=34% Similarity=0.984 Sum_probs=21.2
Q ss_pred CCccccHHHHHHHhh-------------cCCCCccccccccc
Q 027422 190 CGHCFHSECVDKWLT-------------RNGSCPVCRECVCK 218 (223)
Q Consensus 190 CgH~FH~~CI~~WL~-------------~~~sCPvCR~~v~~ 218 (223)
|.-..|.+|+-+|+. ++-.||+||+...-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 345678899999875 23359999998654
No 97
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=0.075 Score=46.19 Aligned_cols=53 Identities=28% Similarity=0.647 Sum_probs=35.8
Q ss_pred cccCcccccccccccCCCce-eecC-CC---CccccHHHHHHHhhcC--------CCCcccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSA-RKLP-SC---GHCFHSECVDKWLTRN--------GSCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~-~~Lp-~C---gH~FH~~CI~~WL~~~--------~sCPvCR~~v~ 217 (223)
.+.+..|-||+..=++.... -.-| .| .|.-|..|+..|+..+ -+||-|+++..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 44678899998764443322 1223 23 2899999999999633 25999998753
No 98
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=0.14 Score=47.31 Aligned_cols=29 Identities=41% Similarity=1.108 Sum_probs=23.3
Q ss_pred CCCCccccHHHHHHHhhcC--CCCccccccc
Q 027422 188 PSCGHCFHSECVDKWLTRN--GSCPVCRECV 216 (223)
Q Consensus 188 p~CgH~FH~~CI~~WL~~~--~sCPvCR~~v 216 (223)
+.|+|.|-.+||++||.+. ..||.|...-
T Consensus 25 l~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 25 LQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 3699999999999999522 3599998654
No 99
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.29 E-value=0.058 Score=52.82 Aligned_cols=50 Identities=28% Similarity=0.683 Sum_probs=40.4
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC---CCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG---SCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~---sCPvCR~~v~~~ 219 (223)
....+|+||.+.+..+..+ +|.|.|+..|+..-+...+ .||+|+..+...
T Consensus 19 ~k~lEc~ic~~~~~~p~~~----kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLL----KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hhhccCCceeEEeeccchh----hhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 3568999999999987545 7999999999998776554 699999877644
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.087 Score=47.01 Aligned_cols=43 Identities=30% Similarity=0.660 Sum_probs=29.6
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
.|.-|--.+ ...-|..| |.|+||.+|... ...+.||.|-..|.
T Consensus 92 fCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 466663332 23446676 999999999765 34568999987664
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.09 E-value=0.091 Score=45.35 Aligned_cols=50 Identities=26% Similarity=0.621 Sum_probs=36.2
Q ss_pred cCcccccccccc-cCCC-ceeecCCCCccccHHHHHHHhhcC-CCCc--cccccc
Q 027422 167 NEIGCSICLEKF-EEGD-SARKLPSCGHCFHSECVDKWLTRN-GSCP--VCRECV 216 (223)
Q Consensus 167 ~~~~C~ICle~f-~~~~-~~~~Lp~CgH~FH~~CI~~WL~~~-~sCP--vCR~~v 216 (223)
.+..||||..+. -+|+ .+..-|.|-|..|.+|.++-+... ..|| -|.+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 467899998763 3333 344456799999999999998754 5799 675543
No 102
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=91.00 E-value=0.22 Score=42.40 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=23.4
Q ss_pred HhhcccchhhhccccCCcc--ccccccccchhhhhHHHHHH
Q 027422 52 FALGGAIVGTIFGAMKGQT--TETGFLHGAGIGAVAGAITA 90 (223)
Q Consensus 52 ~a~~g~~~ga~~g~~~G~~--~~~g~l~Ga~~GaiaGav~s 90 (223)
-|.+|+++||++|++.|-. ...|-+.|+++|+.+|+...
T Consensus 38 ga~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~G~~~G~~~g 78 (219)
T PRK10510 38 GAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVG 78 (219)
T ss_pred hhHHHHHHHHHHHhhhcCCCcccchhhhHhHHHhhhhhhhh
Confidence 3445666666666665522 12356667777777777765
No 103
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=90.75 E-value=0.048 Score=34.98 Aligned_cols=36 Identities=39% Similarity=0.541 Sum_probs=28.4
Q ss_pred hcccchhhhccccCCccccccccccchhhhhHHHHHH
Q 027422 54 LGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITA 90 (223)
Q Consensus 54 ~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s 90 (223)
.-|+.+|+.+|++.|.... .--+|+.+||..|++..
T Consensus 4 ~~GA~iGA~~GA~iG~~~g-~~~~GA~iGA~~Ga~~G 39 (45)
T PF13441_consen 4 VRGAAIGAAAGAVIGAIIG-NGGKGAAIGAAAGALAG 39 (45)
T ss_pred hhHHHHHHHHHHHHHHhhC-CCcccchhhhhhhhhhh
Confidence 4578888888888888887 66788888888887753
No 104
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=0.27 Score=45.15 Aligned_cols=49 Identities=18% Similarity=0.468 Sum_probs=40.0
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC---CCccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG---SCPVCRECV 216 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~---sCPvCR~~v 216 (223)
.-+.|||=.+.-.+......|. |||+...+-+.+..++.. .||.|-.+.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4578999888877777788887 999999999999877554 699996543
No 105
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=89.55 E-value=0.096 Score=33.76 Aligned_cols=35 Identities=43% Similarity=0.536 Sum_probs=28.0
Q ss_pred cccchhhhccccCCccccccccccchhhhhHHHHHH
Q 027422 55 GGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITA 90 (223)
Q Consensus 55 ~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s 90 (223)
.|+.+|+++|++.|..+. +-..|+.+|+..|++..
T Consensus 1 ~Ga~iGA~~Ga~iG~~~g-~~~~ga~iGa~vGa~~G 35 (46)
T PF13488_consen 1 IGAAIGAAAGAAIGAATG-GPGKGAAIGAAVGAAVG 35 (46)
T ss_pred CcHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHH
Confidence 378889999999998886 45778888888888765
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=0.17 Score=46.74 Aligned_cols=38 Identities=29% Similarity=0.634 Sum_probs=28.2
Q ss_pred cCcccccccccccCC-CceeecCCCCccccHHHHHHHhhc
Q 027422 167 NEIGCSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLTR 205 (223)
Q Consensus 167 ~~~~C~ICle~f~~~-~~~~~Lp~CgH~FH~~CI~~WL~~ 205 (223)
....|.||+.+.... .... ...|+|.||.+|..+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhh
Confidence 467899999554444 3333 4469999999999998873
No 107
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=89.11 E-value=0.12 Score=39.83 Aligned_cols=34 Identities=44% Similarity=0.567 Sum_probs=14.5
Q ss_pred cccchhhhccccCCccccccccccchhhhhHHHHH
Q 027422 55 GGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAIT 89 (223)
Q Consensus 55 ~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~ 89 (223)
.|+++|+++|++.|...+. --+|+.+||..|++.
T Consensus 54 ~ga~~GA~~GA~~Ga~~G~-~~~ga~~GAa~Ga~~ 87 (118)
T PF13436_consen 54 GGAAIGAAAGAAIGAIIGG-NGRGAAIGAAAGAAV 87 (118)
T ss_pred HHHHHHHHHHHHHHhhcCC-CccchHHHHHHHHHH
Confidence 4444444444444444332 334444444444443
No 108
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=89.02 E-value=0.22 Score=28.14 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=16.4
Q ss_pred ccccccccccCCCceeecCCCCccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCF 194 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~F 194 (223)
.||-|...+. ...+..|.|||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 5888877653 4556677888877
No 109
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=88.90 E-value=0.088 Score=33.28 Aligned_cols=36 Identities=44% Similarity=0.534 Sum_probs=22.6
Q ss_pred hcccchhhhccccCCccccccccccchhhhhHHHHHHH
Q 027422 54 LGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITAL 91 (223)
Q Consensus 54 ~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s~ 91 (223)
++|+++|+++|...+. .++-..++..||+.|++..-
T Consensus 4 ~~Ga~~Ga~~G~~ig~--~~g~~~g~~~Ga~~Ga~~G~ 39 (42)
T PF05433_consen 4 LIGAAVGAVAGSQIGG--GNGRTLGAVAGAVAGALIGN 39 (42)
T ss_pred HHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHh
Confidence 4555555555555533 34556788888888887653
No 110
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=88.61 E-value=0.19 Score=32.81 Aligned_cols=43 Identities=16% Similarity=0.526 Sum_probs=20.2
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhc---C--CCCcccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR---N--GSCPVCREC 215 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~---~--~sCPvCR~~ 215 (223)
..|||....+..+... . .|.|.-|.+ ++.|+.. . -.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg--~-~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRG--K-NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEE--T-T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccC--C-cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 5799998888775443 3 699975543 4455542 2 249999874
No 111
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.18 E-value=0.31 Score=48.29 Aligned_cols=41 Identities=27% Similarity=0.714 Sum_probs=28.2
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPV 211 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPv 211 (223)
..|.||--.......+ .. .|+|..|.+|...|++....||.
T Consensus 1029 ~~C~~C~l~V~gss~~-Cg-~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNF-CG-TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchh-hc-cccccccHHHHHHHHhcCCcCCC
Confidence 4455554433322211 23 59999999999999999999984
No 112
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=88.09 E-value=0.47 Score=31.28 Aligned_cols=43 Identities=28% Similarity=0.605 Sum_probs=22.9
Q ss_pred cccccccccCCC------ceeecCCCCccccHHHHHHHhhcCCCCcccc
Q 027422 171 CSICLEKFEEGD------SARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213 (223)
Q Consensus 171 C~ICle~f~~~~------~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR 213 (223)
|--|+..|..+. .....|+|++.||.+|=.---+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666666652 4567889999999999443333446799884
No 113
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.74 E-value=0.29 Score=43.02 Aligned_cols=50 Identities=32% Similarity=0.722 Sum_probs=35.4
Q ss_pred CcccccccccccCCCc-eeecC-CCC---ccccHHHHHHHhh--cCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDS-ARKLP-SCG---HCFHSECVDKWLT--RNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~-~~~Lp-~Cg---H~FH~~CI~~WL~--~~~sCPvCR~~v~ 217 (223)
+..|-||..+...... ....| .|. +..|..|+++|+. +...|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4789999997665432 22344 233 5789999999998 5567999988553
No 114
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=0.43 Score=42.02 Aligned_cols=31 Identities=42% Similarity=0.882 Sum_probs=25.3
Q ss_pred eecCCCCccccHHHHHHHhhcC-CCCccccccc
Q 027422 185 RKLPSCGHCFHSECVDKWLTRN-GSCPVCRECV 216 (223)
Q Consensus 185 ~~Lp~CgH~FH~~CI~~WL~~~-~sCPvCR~~v 216 (223)
+.| +|||.+|..|+.+.+... ..||.||.+.
T Consensus 23 ~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 23 RVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred ccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 444 599999999999987755 4699999984
No 115
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.82 E-value=0.82 Score=35.04 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=35.5
Q ss_pred CcccccccccccCCC----------ceeecCCCCccccHHHHHHHhhcCCCCcccc
Q 027422 168 EIGCSICLEKFEEGD----------SARKLPSCGHCFHSECVDKWLTRNGSCPVCR 213 (223)
Q Consensus 168 ~~~C~ICle~f~~~~----------~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR 213 (223)
...|--|+..|..+. .....++|.+.||.+|-.-+-+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 456999999886531 2344778999999999888777777899996
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.07 E-value=0.4 Score=42.55 Aligned_cols=29 Identities=24% Similarity=0.794 Sum_probs=22.2
Q ss_pred CCccccHHHHHHHhh-------------cCCCCccccccccc
Q 027422 190 CGHCFHSECVDKWLT-------------RNGSCPVCRECVCK 218 (223)
Q Consensus 190 CgH~FH~~CI~~WL~-------------~~~sCPvCR~~v~~ 218 (223)
|....|.+|+-+|+. ++-+||+||+...-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 456788899998874 44569999998653
No 117
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.30 E-value=0.49 Score=41.88 Aligned_cols=37 Identities=24% Similarity=0.668 Sum_probs=31.2
Q ss_pred cCcccccccccccCCCceeecCCC----CccccHHHHHHHhhcCC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSC----GHCFHSECVDKWLTRNG 207 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~C----gH~FH~~CI~~WL~~~~ 207 (223)
....|.+|.|.+++.-.+ +| .|.||..|-.+-++++.
T Consensus 267 apLcCTLC~ERLEDTHFV----QCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV----QCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCcee----ecCCCcccceecccCHHHHHhhc
Confidence 458899999999997777 46 59999999999998654
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.71 E-value=0.95 Score=44.90 Aligned_cols=41 Identities=20% Similarity=0.491 Sum_probs=31.3
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPV 211 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPv 211 (223)
-.|.+|-..+.. .....+.|+|.-|.+|+.+|+..+..||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 468888655433 23345679999999999999998888876
No 119
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.71 E-value=1 Score=40.56 Aligned_cols=52 Identities=31% Similarity=0.655 Sum_probs=39.3
Q ss_pred CcccccccccccCCCceeecC-CCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 168 EIGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp-~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
...|+||.++..... ...+| .|+|..|..|...-...+.+||.||.+....+
T Consensus 249 ~~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCCcccccc-cccccccccccchhhhhhcccccCCCCCccCCccccCc
Confidence 478999998773322 22344 48999999999998889999999998776443
No 120
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=83.21 E-value=0.82 Score=45.78 Aligned_cols=50 Identities=24% Similarity=0.609 Sum_probs=35.4
Q ss_pred cCcccccccccccCCCceeecC-CCC---ccccHHHHHHHhhc--CCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLP-SCG---HCFHSECVDKWLTR--NGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp-~Cg---H~FH~~CI~~WL~~--~~sCPvCR~~v~ 217 (223)
++..|.||..+=..++.+ .-| +|. ...|.+|+.+|+.- +..|-+|+.++.
T Consensus 11 d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 458999998765544433 222 343 47899999999984 456999998764
No 121
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.05 E-value=0.63 Score=44.84 Aligned_cols=47 Identities=36% Similarity=0.882 Sum_probs=38.0
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
+....|.+|+++. ..+..+ |. |..|..+|+..+..||+|+..+..++
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 4567899999998 344444 77 99999999999999999998876543
No 122
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.83 E-value=0.52 Score=45.99 Aligned_cols=44 Identities=32% Similarity=0.638 Sum_probs=31.8
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
-..|+||+..|......-+.+.|||+.|..|..... +.+|| |+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 467999998887654433333699999999999874 45677 443
No 124
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=82.52 E-value=0.46 Score=46.05 Aligned_cols=44 Identities=27% Similarity=0.810 Sum_probs=28.8
Q ss_pred cCcccccccc-----cccCCCceeecCCCCccccHHHHHHHhhcCCCCccccc
Q 027422 167 NEIGCSICLE-----KFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle-----~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
....|.+|.. .|+ .+.++....|+++||..|... ....||.|-+
T Consensus 510 ~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 3456777733 233 234455556999999999765 4555999954
No 125
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=82.38 E-value=0.79 Score=27.91 Aligned_cols=27 Identities=37% Similarity=0.886 Sum_probs=18.2
Q ss_pred cccccccccccCCCc-------eeecCCCCcccc
Q 027422 169 IGCSICLEKFEEGDS-------ARKLPSCGHCFH 195 (223)
Q Consensus 169 ~~C~ICle~f~~~~~-------~~~Lp~CgH~FH 195 (223)
..||-|...|+.++. ..+.|+|+|.|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 468888877765543 345667888775
No 126
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=81.81 E-value=0.97 Score=38.00 Aligned_cols=41 Identities=34% Similarity=0.859 Sum_probs=29.7
Q ss_pred Cccccccccc-----ccCCCceeecCCCCccccHHHHHHHhhcCCCCccccc
Q 027422 168 EIGCSICLEK-----FEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 168 ~~~C~ICle~-----f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
...|-+|.++ |+. +.+.+.+.|+-+||..|.. +..||-|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4567777642 333 3567788899999999977 267999964
No 127
>PRK11280 hypothetical protein; Provisional
Probab=81.05 E-value=0.72 Score=37.90 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=20.6
Q ss_pred ccchhhhccccCCcccc--ccccccchhhhhHHHHHHHHH
Q 027422 56 GAIVGTIFGAMKGQTTE--TGFLHGAGIGAVAGAITALQL 93 (223)
Q Consensus 56 g~~~ga~~g~~~G~~~~--~g~l~Ga~~GaiaGav~s~e~ 93 (223)
|+++||++|++.|..-. +|-.-++..||+.|++..-++
T Consensus 67 Gtv~Gav~Gg~~G~~iGgG~Gr~~at~~Ga~~G~~~G~~i 106 (170)
T PRK11280 67 GSVLGAVAGGVLGHQFGGGRGKDVATVAGALGGGYAGNQI 106 (170)
T ss_pred hHHHHHHHHHHhhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 44444444444444322 333446677777777776443
No 128
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=80.80 E-value=0.93 Score=39.74 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=34.2
Q ss_pred cccccccccccC-CCceeecC--CCCccccHHHHHHHhh---------cCCCCccccccc
Q 027422 169 IGCSICLEKFEE-GDSARKLP--SCGHCFHSECVDKWLT---------RNGSCPVCRECV 216 (223)
Q Consensus 169 ~~C~ICle~f~~-~~~~~~Lp--~CgH~FH~~CI~~WL~---------~~~sCPvCR~~v 216 (223)
.+|-+|.+++.+ .......| .|+-++|..|+...+. ....||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 589999999943 33333332 6888999999998543 334699999854
No 129
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=80.53 E-value=0.37 Score=36.25 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=6.7
Q ss_pred cccchhhhccccCCccc
Q 027422 55 GGAIVGTIFGAMKGQTT 71 (223)
Q Consensus 55 ~g~~~ga~~g~~~G~~~ 71 (223)
+|+++||.+|++.|-.+
T Consensus 20 ~G~~~GA~~Gal~G~l~ 36 (102)
T PF06897_consen 20 LGAAVGAAAGALAGALS 36 (102)
T ss_pred HHHHHHHHHHHHHhHHh
Confidence 33344444444443333
No 130
>PRK10540 lipoprotein; Provisional
Probab=79.10 E-value=1.7 Score=30.62 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=17.8
Q ss_pred cccchhhhccccCCccccccccccchhhhhHHHHHHH
Q 027422 55 GGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITAL 91 (223)
Q Consensus 55 ~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s~ 91 (223)
.|+..|+++|++.|. |-..|+.+||..|++..-
T Consensus 36 ~Ga~~Ga~~Ga~~g~----g~~~g~~~Ga~~G~~~G~ 68 (72)
T PRK10540 36 IGAGAGALGGAVLTD----GSTLGTLGGAAVGGVIGH 68 (72)
T ss_pred HHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHhH
Confidence 355555555555542 223466666666666543
No 131
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.06 E-value=1.3 Score=41.63 Aligned_cols=37 Identities=30% Similarity=0.750 Sum_probs=30.0
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhh
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT 204 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~ 204 (223)
...+.+|-||.+.+.. ....++ |+|.||..|+..++.
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLG 103 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhh
Confidence 3467899999998876 444454 999999999999986
No 132
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=76.17 E-value=0.28 Score=34.42 Aligned_cols=40 Identities=23% Similarity=0.555 Sum_probs=21.7
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
..||.|.+++.... +|.+|..|-.. +.....||-|.+++.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 57999988866422 56666667554 456677999988764
No 133
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=75.71 E-value=1.4 Score=37.47 Aligned_cols=45 Identities=29% Similarity=0.732 Sum_probs=35.1
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
+-..|.+|..-.-.+ +++.+|+-.+|..|+..++.+.+.||.|..
T Consensus 180 nlk~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 346799998765543 333368889999999999999999999944
No 134
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=75.63 E-value=3.4 Score=41.24 Aligned_cols=48 Identities=27% Similarity=0.505 Sum_probs=33.3
Q ss_pred cCcccccccccccCCC---------ceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGD---------SARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~---------~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
.+.+|+-|...|-.-. ..-.+|.|.|.-|..=|.+ .+.||+|...+..
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMESF 1186 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhhc
Confidence 5678888877664211 2235678999888876654 6889999877653
No 135
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.55 E-value=1.6 Score=43.69 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=35.4
Q ss_pred cCcccccccccccCCCc---eeecCCCCccccHHHHHHHhhc------CCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDS---ARKLPSCGHCFHSECVDKWLTR------NGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~---~~~Lp~CgH~FH~~CI~~WL~~------~~sCPvCR~~v~ 217 (223)
+...|.+|.-++.+++. ...+..|+|.||..||..|..+ +-.||+|..-+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 44678888877776332 2222269999999999999753 234888877654
No 136
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=74.89 E-value=4.3 Score=27.22 Aligned_cols=47 Identities=26% Similarity=0.667 Sum_probs=34.2
Q ss_pred CcccccccccccCCC-ceeecCCCCc--cccHHHHHHHhhcCCCCcccccccccC
Q 027422 168 EIGCSICLEKFEEGD-SARKLPSCGH--CFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 168 ~~~C~ICle~f~~~~-~~~~Lp~CgH--~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
...|-.|-.++.... ... -|.+ +||.+|.+..| +..||.|--.+...
T Consensus 5 rpnCE~C~~dLp~~s~~A~---ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSPEAY---ICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCCccccCCCCCCCCCcce---EEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 346777877776655 232 3764 89999999976 78999998776543
No 137
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=74.70 E-value=2.3 Score=32.54 Aligned_cols=28 Identities=36% Similarity=0.689 Sum_probs=19.2
Q ss_pred cCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 187 LPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 187 Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
+|+|+|. .+-+.+...|+.||+++.-+.
T Consensus 72 CP~C~K~------TKmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 72 CPNCGKQ------TKMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred CCCCCCh------HhhhchhhccCcCCCcCccCc
Confidence 4456663 344566778999999987554
No 138
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=74.65 E-value=1.6 Score=27.80 Aligned_cols=43 Identities=28% Similarity=0.637 Sum_probs=29.3
Q ss_pred cccccccccCCCceeecCCCCccccHHHHHHHhh------cCCCCccccc
Q 027422 171 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT------RNGSCPVCRE 214 (223)
Q Consensus 171 C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~------~~~sCPvCR~ 214 (223)
|.||.+.-. ...+.....|+..||..|+..=.. ..-.||.|+.
T Consensus 2 C~vC~~~~~-~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDD-DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCT-TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCC-CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 889988433 444555557999999999876543 2335888864
No 139
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=74.59 E-value=0.92 Score=36.01 Aligned_cols=39 Identities=36% Similarity=0.615 Sum_probs=28.2
Q ss_pred HHHhhcccchhhhccccCCccccccccccchhhhhHHHHHH
Q 027422 50 CIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITA 90 (223)
Q Consensus 50 ~~~a~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s 90 (223)
.+-+++|+.+|.|.|.-+|.-+.+-+ -+.+|||+|++..
T Consensus 61 vvG~igG~~lGG~~g~~iGgG~G~~~--At~~GAvAGgvaG 99 (154)
T COG3133 61 VIGAIGGAVLGGFLGNTIGGGTGRSL--ATAAGAVAGGVAG 99 (154)
T ss_pred cceeeccccccceeeccccCCcchHH--HHHHhHhhhhhhh
Confidence 34566788888888887777766544 4578888888875
No 140
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=74.55 E-value=1.4 Score=30.01 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=20.5
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHh
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL 203 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL 203 (223)
+...|.+|...|..-..-.....||++||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 5578999999996644444455799999999987654
No 141
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=72.74 E-value=3.8 Score=30.11 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=32.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
+...|+-|.+.+.--+.+ | +..|+..+..|..|+++++.
T Consensus 32 ~rS~C~~C~~~L~~~~lI---P----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 32 PRSHCPHCGHPLSWWDLI---P----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCCcCcCCCCcCcccccc---h----------HHHHHHhCCCCcccCCCCCh
Confidence 567899999888774444 5 88999999999999999864
No 142
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=71.25 E-value=2.8 Score=25.34 Aligned_cols=27 Identities=37% Similarity=0.819 Sum_probs=16.8
Q ss_pred cccccccccccCCCc-------eeecCCCCcccc
Q 027422 169 IGCSICLEKFEEGDS-------ARKLPSCGHCFH 195 (223)
Q Consensus 169 ~~C~ICle~f~~~~~-------~~~Lp~CgH~FH 195 (223)
..|+=|...|..++. ..+.++|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 467778777765443 234556888774
No 143
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.87 E-value=3.6 Score=38.02 Aligned_cols=68 Identities=29% Similarity=0.484 Sum_probs=42.2
Q ss_pred CCHHHHhcCCccccchhhhhh--cccCccccccccccc--CCCceeecCCCCccccHHHHHHHhhcCCCCccc
Q 027422 144 LSEDMIQKLPECALHSEELIQ--LDNEIGCSICLEKFE--EGDSARKLPSCGHCFHSECVDKWLTRNGSCPVC 212 (223)
Q Consensus 144 ~s~~~i~~lp~~~~~~~~~~~--~~~~~~C~ICle~f~--~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvC 212 (223)
++-+..+++......++...+ ...-..||.|.-.++ .+-...... |+|.||..|...|...+..|..|
T Consensus 280 ~sC~eykk~~~~~~~d~~~~~~la~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 280 LSCEEYKKLNPEEYVDDITLKYLAKRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CCHHHHHHhCCcccccHHHHHHHHHhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 445555555443333222211 134578999976544 344455666 99999999999998877777444
No 144
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=70.74 E-value=3.5 Score=26.84 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=27.3
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhh
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT 204 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~ 204 (223)
..|.+|...|..-..-.....||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 578999888876544444557999999999887654
No 145
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.65 E-value=3.8 Score=35.80 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=39.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
....|||=--++........+-.|||+|-..-+.+. ....|++|.+.+..++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 457899987777665555555579999999888774 4678999999876543
No 146
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=70.61 E-value=1.7 Score=32.62 Aligned_cols=36 Identities=42% Similarity=0.650 Sum_probs=21.2
Q ss_pred hhcccchhhhccccCCccccccccccchhhhhHHHHH
Q 027422 53 ALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAIT 89 (223)
Q Consensus 53 a~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~ 89 (223)
|+.|++.|.++|.+.+..- -|++-||+.||++|++.
T Consensus 1 A~~G~~~G~LiGll~~~pl-~G~~~GA~~Gal~G~l~ 36 (102)
T PF06897_consen 1 ALSGALWGLLIGLLFGPPL-LGAAVGAAAGALAGALS 36 (102)
T ss_pred CcchhHHHHHHHHHhhhHH-HHHHHHHHHHHHHhHHh
Confidence 4556666666666655421 24566667777776643
No 147
>PRK05978 hypothetical protein; Provisional
Probab=70.19 E-value=3 Score=33.50 Aligned_cols=29 Identities=28% Similarity=0.715 Sum_probs=22.7
Q ss_pred ecCCCC--ccccHHHHHHHhhcCCCCcccccccccC
Q 027422 186 KLPSCG--HCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 186 ~Lp~Cg--H~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
++|+|| |.|+ .+++-+..||.|-.++...
T Consensus 35 rCP~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 35 RCPACGEGKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred cCCCCCCCcccc-----cccccCCCccccCCccccC
Confidence 455664 7886 7899999999999988754
No 148
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.65 E-value=3.2 Score=36.17 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=29.0
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT 204 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~ 204 (223)
+-..|+.||+++.++... +=||+|+.+||.+++.
T Consensus 42 ~FdcCsLtLqPc~dPvit----~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVIT----PDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCCccC----CCCeeeeHHHHHHHHH
Confidence 456899999999997766 5899999999999875
No 149
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=67.94 E-value=3.1 Score=35.51 Aligned_cols=34 Identities=41% Similarity=0.653 Sum_probs=15.5
Q ss_pred cccchhhhccccCCccccccccccchhh-hhHHHHHH
Q 027422 55 GGAIVGTIFGAMKGQTTETGFLHGAGIG-AVAGAITA 90 (223)
Q Consensus 55 ~g~~~ga~~g~~~G~~~~~g~l~Ga~~G-aiaGav~s 90 (223)
.|++.|+.+|+..|....+ -+|+.+| +++||+..
T Consensus 88 gga~~Ga~~G~~~g~~~~~--~~g~~~G~GlaGalig 122 (215)
T PF05818_consen 88 GGALAGAATGAAIGAYNSG--SAGAAIGAGLAGALIG 122 (215)
T ss_pred hhHHHHhHHhhhhccccCC--ccchhhhhhHHHhHHH
Confidence 3444455555544433322 2344455 55555544
No 150
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=67.74 E-value=5 Score=36.20 Aligned_cols=53 Identities=23% Similarity=0.523 Sum_probs=33.1
Q ss_pred cCccccccccccc---------------CCCc-eeecCCCCccccHHHHHHHhh---------cCCCCcccccccccCC
Q 027422 167 NEIGCSICLEKFE---------------EGDS-ARKLPSCGHCFHSECVDKWLT---------RNGSCPVCRECVCKDT 220 (223)
Q Consensus 167 ~~~~C~ICle~f~---------------~~~~-~~~Lp~CgH~FH~~CI~~WL~---------~~~sCPvCR~~v~~~~ 220 (223)
.+.+||+|+..=. .+.. ...- +|||+--..-..-|-. -+..||.|-+.+....
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~-PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFN-PCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccC-CcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 4678999986311 1111 1234 4999866666666754 2345999988776543
No 151
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=67.27 E-value=4.7 Score=36.50 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=33.1
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
.+..|-.|..+....... +.+.|.|.||.+|-.---+.-..||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y-~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRY-RCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcE-EchhccceeeccchHHHHhhhhcCCCcCC
Confidence 345599997776664444 45579999999996554445567999974
No 152
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=67.13 E-value=2 Score=36.55 Aligned_cols=35 Identities=40% Similarity=0.474 Sum_probs=18.2
Q ss_pred ccchhhhccccCCcccccc--ccccchhhhhHHHHHH
Q 027422 56 GAIVGTIFGAMKGQTTETG--FLHGAGIGAVAGAITA 90 (223)
Q Consensus 56 g~~~ga~~g~~~G~~~~~g--~l~Ga~~GaiaGav~s 90 (223)
|+.+||++|++.|..+... -..|+++||..|+...
T Consensus 38 ga~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~G~~~G 74 (219)
T PRK10510 38 GAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALG 74 (219)
T ss_pred hhHHHHHHHHHHHhhhcCCCcccchhhhHhHHHhhhh
Confidence 5566666666666555431 2334555555554433
No 153
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=65.99 E-value=1.6 Score=37.86 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=4.7
Q ss_pred cchhhhhHHHHH
Q 027422 78 GAGIGAVAGAIT 89 (223)
Q Consensus 78 Ga~~GaiaGav~ 89 (223)
|+.+|++.|++.
T Consensus 62 G~~~G~~~G~~~ 73 (239)
T TIGR03789 62 GAIIGGITGGLI 73 (239)
T ss_pred HHHHHHHHHHHh
Confidence 333344444333
No 154
>PLN02720 complex II
Probab=65.04 E-value=2.3 Score=33.31 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=23.7
Q ss_pred HHhhcccchhhh-ccccCCccccccccccchhhh----hHHHHHHHHHH
Q 027422 51 IFALGGAIVGTI-FGAMKGQTTETGFLHGAGIGA----VAGAITALQLL 94 (223)
Q Consensus 51 ~~a~~g~~~ga~-~g~~~G~~~~~g~l~Ga~~Ga----iaGav~s~e~~ 94 (223)
-||++|+++||+ |++++=..+.+ .+|+++.- +.|..+.-|+.
T Consensus 67 ~fa~~Ga~vGa~~tag~a~kysk~--phga~lsfl~G~~~G~~~G~EvA 113 (140)
T PLN02720 67 TFAVTGAAVGAVSTAGVAWKYSKS--PHGAALAFLGGGVFGWAFGQEVA 113 (140)
T ss_pred HHHhhhhhhhhhhhhHHHHHhhcC--CchHHHHHhccchhhhhHhHHHH
Confidence 478899999976 33333333433 56665544 44444444443
No 155
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=62.53 E-value=2.8 Score=38.84 Aligned_cols=45 Identities=27% Similarity=0.624 Sum_probs=0.0
Q ss_pred cCcccccccccccCCCc-----------eeecCCCCccccHHHHHHHhh------cCCCCcccccc
Q 027422 167 NEIGCSICLEKFEEGDS-----------ARKLPSCGHCFHSECVDKWLT------RNGSCPVCREC 215 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~-----------~~~Lp~CgH~FH~~CI~~WL~------~~~sCPvCR~~ 215 (223)
...+||+=|..+.-+.. ...+ +|||++-.. .|-. ....||+||+.
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl-~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYL-NCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeec-cccceeeec---ccccccccccccccCCCcccc
Confidence 45788888776654332 2234 599976554 4532 24579999975
No 157
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=60.44 E-value=11 Score=28.40 Aligned_cols=48 Identities=29% Similarity=0.515 Sum_probs=28.6
Q ss_pred cCcccccccccccCCCce----eecCCC---CccccHHHHHHHhhcC---------CCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSA----RKLPSC---GHCFHSECVDKWLTRN---------GSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~----~~Lp~C---gH~FH~~CI~~WL~~~---------~sCPvCR~ 214 (223)
....|-.|.+.-.+.... ...++| .=.||..|+..++... -.||.||.
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 345666666643322211 012456 5679999999887532 24999986
No 158
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.81 E-value=3.3 Score=41.43 Aligned_cols=44 Identities=36% Similarity=0.637 Sum_probs=30.9
Q ss_pred cCcccccccccccCC----CceeecCCCCccccHHHHHHHhhcCCCCccc
Q 027422 167 NEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVC 212 (223)
Q Consensus 167 ~~~~C~ICle~f~~~----~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvC 212 (223)
.+..|.-|.+..... ..+..+ +|+|.||..|+..-..+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~-~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVF-HCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEE-EccchhhhcccccHHHhcc-cChh
Confidence 345799998876532 244555 5999999999987766555 5544
No 159
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=59.72 E-value=3 Score=27.32 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=5.4
Q ss_pred CCccccccccc
Q 027422 208 SCPVCRECVCK 218 (223)
Q Consensus 208 sCPvCR~~v~~ 218 (223)
.||+|.+++.+
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 78888888764
No 160
>PRK10457 hypothetical protein; Provisional
Probab=59.08 E-value=9.7 Score=27.47 Aligned_cols=50 Identities=32% Similarity=0.383 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcccchhhhccccCCccccccccccchhhhhHHHHHHHHHH
Q 027422 45 YAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLL 94 (223)
Q Consensus 45 ~~~~t~~~a~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s~e~~ 94 (223)
.-+.|.+.+++|+++|...+.+-|....+|+--+.-+.++.||+.-+-+.
T Consensus 28 G~~~tiilGiiGA~iGg~l~~~~g~~~~~g~~~~~~i~aviGAiill~i~ 77 (82)
T PRK10457 28 GFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIVVLFIY 77 (82)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHH
Confidence 44678888999999998877665554334442235677888888765443
No 161
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.99 E-value=2.5 Score=37.11 Aligned_cols=49 Identities=33% Similarity=0.561 Sum_probs=35.9
Q ss_pred cCcccccccccccCC--Cce-eecCC-------CCccccHHHHHHHhhcC-CCCcccccc
Q 027422 167 NEIGCSICLEKFEEG--DSA-RKLPS-------CGHCFHSECVDKWLTRN-GSCPVCREC 215 (223)
Q Consensus 167 ~~~~C~ICle~f~~~--~~~-~~Lp~-------CgH~FH~~CI~~WL~~~-~sCPvCR~~ 215 (223)
.+..|.||...+... ..+ +.+.. |+|..|..|++.-+.+. ..||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346799999888732 222 22323 99999999999987755 589999974
No 162
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=58.89 E-value=4.1 Score=26.60 Aligned_cols=39 Identities=33% Similarity=0.739 Sum_probs=21.4
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhh--cCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--RNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~--~~~sCPvCR~~v~ 217 (223)
...||.|-+++... .+ +.| |.+.--. ....||+|...+.
T Consensus 2 ~f~CP~C~~~~~~~-~L-----~~H-----~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-SL-----VEH-----CEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHH-HH-----HHH-----HHhHCcCCCCCccCCCchhhhh
Confidence 46899998865432 22 333 2222211 2346999987544
No 163
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=57.71 E-value=7.8 Score=25.35 Aligned_cols=23 Identities=35% Similarity=0.921 Sum_probs=12.4
Q ss_pred CCCccccHHHHHHHhhcCCCCccc
Q 027422 189 SCGHCFHSECVDKWLTRNGSCPVC 212 (223)
Q Consensus 189 ~CgH~FH~~CI~~WL~~~~sCPvC 212 (223)
.|+|.|-.. +..-......||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 455554443 22222466779987
No 164
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=57.63 E-value=9.5 Score=31.80 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhccccCCccccc
Q 027422 38 RAMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTET 73 (223)
Q Consensus 38 ~~~~~~~~~~~t~~~a~~g~~~ga~~g~~~G~~~~~ 73 (223)
..++.+++|++|.-|+.+|+..|...|-.+|+.++.
T Consensus 92 sav~~IlsGV~t~g~G~vGg~ag~~~g~gagh~~~g 127 (195)
T PRK15361 92 TAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGG 127 (195)
T ss_pred HHHHHHHHhHHHhcccccchHHHHHhhhhhhhhhhc
Confidence 344556666666556777777777666666666664
No 165
>COG4803 Predicted membrane protein [Function unknown]
Probab=57.33 E-value=6.9 Score=31.61 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=15.2
Q ss_pred hhcccchhhhccccCCcccccc
Q 027422 53 ALGGAIVGTIFGAMKGQTTETG 74 (223)
Q Consensus 53 a~~g~~~ga~~g~~~G~~~~~g 74 (223)
-+.|..+||.+||+.|--++-|
T Consensus 79 Pl~G~avGAa~GAl~g~l~DvG 100 (170)
T COG4803 79 PLLGMAVGAASGALSGSLTDVG 100 (170)
T ss_pred HHHHHHHHHhhhhhccceeecC
Confidence 4467777777777777777644
No 166
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=56.98 E-value=10 Score=21.88 Aligned_cols=38 Identities=24% Similarity=0.581 Sum_probs=22.4
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
.|..|.+.+...+..... =+..||..| ..|..|+.++.
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcCc
Confidence 377888877765222211 256677765 35677776653
No 167
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.23 E-value=4.4 Score=36.24 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=39.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
+...|-||.-.+..+.... .|.|.|+..|-..|....+.||.||....
T Consensus 104 ~~~~~~~~~g~l~vpt~~q---g~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQ---GCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEeccccc---CceeeeeecCCchhhhhhhccchhhcCcC
Confidence 4567889988877655442 59999999999999999999999988654
No 168
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=56.20 E-value=12 Score=33.75 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=34.8
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC---CCCccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN---GSCPVCRE 214 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~---~sCPvCR~ 214 (223)
..-..||+=-+.-.+......+. |||+.-..-++..-++. ..||.|-.
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34578999777666666666665 99999999888865432 35999954
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=55.38 E-value=5.8 Score=39.35 Aligned_cols=37 Identities=35% Similarity=0.629 Sum_probs=28.3
Q ss_pred ceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 183 SARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 183 ~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
.+..+|.|...||.+=.+--..++..||.||.+-.+.
T Consensus 1043 ~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~dd~ 1079 (1081)
T KOG1538|consen 1043 SITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKDDP 1079 (1081)
T ss_pred hhhhCchHHhhhccchhhHHHHhcCCCCcccccccCC
Confidence 4556677888888877776667899999999986644
No 170
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=55.05 E-value=7.4 Score=22.88 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=12.1
Q ss_pred CCCccccHHHHHHHhhcCCCCcccccc
Q 027422 189 SCGHCFHSECVDKWLTRNGSCPVCREC 215 (223)
Q Consensus 189 ~CgH~FH~~CI~~WL~~~~sCPvCR~~ 215 (223)
.|||++-..- ....||+|..+
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCCc
Confidence 4666544332 44578888764
No 171
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=54.81 E-value=7.5 Score=26.96 Aligned_cols=12 Identities=33% Similarity=0.983 Sum_probs=8.8
Q ss_pred cccHHHHHHHhh
Q 027422 193 CFHSECVDKWLT 204 (223)
Q Consensus 193 ~FH~~CI~~WL~ 204 (223)
-||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 172
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=54.29 E-value=11 Score=21.44 Aligned_cols=29 Identities=21% Similarity=0.541 Sum_probs=11.1
Q ss_pred ccccccccccCCCceeecCCCCccccHHHH
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECV 199 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI 199 (223)
.|.+|.+.... ...-..+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 58888877665 445555679999999985
No 173
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=53.63 E-value=21 Score=24.36 Aligned_cols=8 Identities=0% Similarity=-0.479 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027422 38 RAMKRVLY 45 (223)
Q Consensus 38 ~~~~~~~~ 45 (223)
.++..++.
T Consensus 28 ~~~~~~~~ 35 (65)
T PF10439_consen 28 GVGGGAAG 35 (65)
T ss_pred HHHHHHHH
Confidence 33333333
No 174
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=53.16 E-value=3.8 Score=26.98 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=16.6
Q ss_pred CceeecCCCCccccHHHHHHH
Q 027422 182 DSARKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 182 ~~~~~Lp~CgH~FH~~CI~~W 202 (223)
......|.|+|.||..|-.+|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 345566679999999998888
No 175
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=51.60 E-value=14 Score=29.21 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=12.2
Q ss_pred CCCCcccccccccCCC
Q 027422 206 NGSCPVCRECVCKDTD 221 (223)
Q Consensus 206 ~~sCPvCR~~v~~~~~ 221 (223)
+..||.|...+...++
T Consensus 123 ~f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 123 TFTCPRCGEELEEDDN 138 (147)
T ss_pred cEECCCCCCEEEEcCc
Confidence 3679999999876543
No 176
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=49.96 E-value=8 Score=30.61 Aligned_cols=25 Identities=24% Similarity=0.655 Sum_probs=19.2
Q ss_pred eeecCCCCccccHHHHHHHhhcCCCCccccccc
Q 027422 184 ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 216 (223)
Q Consensus 184 ~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v 216 (223)
-.++++|||+|+.. +..||.|..+.
T Consensus 29 g~kC~~CG~v~~PP--------r~~Cp~C~~~~ 53 (140)
T COG1545 29 GTKCKKCGRVYFPP--------RAYCPKCGSET 53 (140)
T ss_pred EEEcCCCCeEEcCC--------cccCCCCCCCC
Confidence 35566899998865 67799998874
No 177
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=47.77 E-value=4.5 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=14.0
Q ss_pred CCCccccHHHHHHHhhcCCCCccccc
Q 027422 189 SCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 189 ~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
+|||.|-..--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 57776654421111 23456999987
No 178
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=47.65 E-value=30 Score=24.84 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=21.5
Q ss_pred cCccccccccccc---CCCceeecCCCCccccHHHHHHHhh-cCCCCcccccccc
Q 027422 167 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~---~~~~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~ 217 (223)
+...|-||-++.- +++.......|+--.|..|.+-=.+ .++.||-|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 5578999988764 3333333445777889999875544 5677999998765
No 179
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=47.47 E-value=3 Score=36.83 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=21.6
Q ss_pred cCcccccccccccCCCceeecC-CCCccccHHHHHHHhhcCCCCcccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKWLTRNGSCPVCREC 215 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp-~CgH~FH~~CI~~WL~~~~sCPvCR~~ 215 (223)
....||||=...........-+ .=.|.+|.-|-..|--....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 4479999976543322111110 124678888999998888899999653
No 180
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=47.24 E-value=7.3 Score=34.16 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhccccCCccccccc
Q 027422 39 AMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGF 75 (223)
Q Consensus 39 ~~~~~~~~~~t~~~a~~g~~~ga~~g~~~G~~~~~g~ 75 (223)
..++++.+++-+.+ |..+||+.|++.|+.-+.+.
T Consensus 3 ~~gki~g~~~G~~~---~g~~Ga~~G~~~Gh~~d~~~ 36 (267)
T PRK09430 3 YWGKILGFAFGFLF---GGFFGALLGLLIGHMFDKAR 36 (267)
T ss_pred hHHHHHHHHHHHHH---hhHHHHHHHHHHHhHHhhhh
Confidence 34566666666655 34677777777777766544
No 181
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=45.37 E-value=7 Score=36.25 Aligned_cols=51 Identities=20% Similarity=0.496 Sum_probs=0.0
Q ss_pred cCccccccccccc--------------C--CCceeecCCCCccccHHHHHHHhh---------cCCCCccccccccc
Q 027422 167 NEIGCSICLEKFE--------------E--GDSARKLPSCGHCFHSECVDKWLT---------RNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~--------------~--~~~~~~Lp~CgH~FH~~CI~~WL~---------~~~sCPvCR~~v~~ 218 (223)
.+.+||+|++.=. + +.....-| |||+-=.....-|-. -+..||.|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 3689999986411 0 01223345 999987778888854 22469999888764
No 182
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=44.59 E-value=12 Score=25.42 Aligned_cols=16 Identities=25% Similarity=0.733 Sum_probs=12.0
Q ss_pred cCCCCcccccccccCC
Q 027422 205 RNGSCPVCRECVCKDT 220 (223)
Q Consensus 205 ~~~sCPvCR~~v~~~~ 220 (223)
..+.||+|..+.....
T Consensus 38 ~~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSGT 53 (59)
T ss_pred CCccCCCcCCccccce
Confidence 4577999998876543
No 183
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=44.54 E-value=12 Score=28.80 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=19.4
Q ss_pred ccccccchhhhhHHHHHHHHHHH
Q 027422 73 TGFLHGAGIGAVAGAITALQLLE 95 (223)
Q Consensus 73 ~g~l~Ga~~GaiaGav~s~e~~e 95 (223)
..||-|+.+|++.||+.++.+.-
T Consensus 5 ~~~l~G~liGgiiGa~aaLL~AP 27 (115)
T COG4980 5 KDFLFGILIGGIIGAAAALLFAP 27 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHhCC
Confidence 47889999999999999987653
No 184
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=43.17 E-value=29 Score=35.03 Aligned_cols=33 Identities=15% Similarity=0.391 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhh-----cccchhhhccccCCcccc
Q 027422 40 MKRVLYAALTCIFAL-----GGAIVGTIFGAMKGQTTE 72 (223)
Q Consensus 40 ~~~~~~~~~t~~~a~-----~g~~~ga~~g~~~G~~~~ 72 (223)
++++++-.+..+||. +||.+|+++|.+.|.++.
T Consensus 177 l~~il~~~~vl~~a~~gG~~~Gaa~Gv~~Gli~~l~~~ 214 (764)
T TIGR02865 177 LENIIARLAVLLISYIGGSGAGAAGGVVIGVILGLANN 214 (764)
T ss_pred HHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhcCc
Confidence 455666666666664 566677777777776654
No 185
>PRK11677 hypothetical protein; Provisional
Probab=42.65 E-value=5.4 Score=31.54 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=18.4
Q ss_pred HHhhcccchhhhccccCCccccccc
Q 027422 51 IFALGGAIVGTIFGAMKGQTTETGF 75 (223)
Q Consensus 51 ~~a~~g~~~ga~~g~~~G~~~~~g~ 75 (223)
+.|++|-++|+++|.+.++.+..+.
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchh
Confidence 5667788888888888887766543
No 186
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=42.16 E-value=33 Score=31.63 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=37.7
Q ss_pred CccchhHhHHHhhcchHHHHHHHHHhhccchhHHHHHHHH-HHHHHHHHHHHhhcccchhhhccc
Q 027422 2 SKGLVSEVIKMSLTCKETVSLWLFATMCAFGTGVLIRAMK-RVLYAALTCIFALGGAIVGTIFGA 65 (223)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~a~~g~~~ga~~g~ 65 (223)
-.|||.|+.++-++=+.+--.-.++. ..+ +.-..+ +++.-+++..|.-.|+++|.+.|.
T Consensus 321 a~G~faglvEa~~r~p~v~D~~~L~~-~~~----~~g~~~N~~~rvlLv~~~tNlGs~iGt~~~~ 380 (388)
T COG1916 321 AVGWFAGLVEAWYRKPTVKDFETLAD-DLS----FKGMYKNKFFRVLLVVAFTNLGSMIGTFIGL 380 (388)
T ss_pred hhHHHHHHHHHHhcCccHhHHHHHhh-HHH----HHHHHhchhHHHHHHHHHhhhhhHHHHHHHH
Confidence 46899999997776554333322311 111 444444 455566788899999999988765
No 187
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=41.75 E-value=25 Score=32.60 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=38.2
Q ss_pred ccchhHhHHHhhcchHHHHHHHHHhhccchhHHHHHHHH-HHHHHHHHHHHhhcccchhhhccc
Q 027422 3 KGLVSEVIKMSLTCKETVSLWLFATMCAFGTGVLIRAMK-RVLYAALTCIFALGGAIVGTIFGA 65 (223)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~a~~g~~~ga~~g~ 65 (223)
-|||+|+.++-+|=+ .+.- |-.+... ..+..+.+ +++.-+|.++++-.|+.+|.++|+
T Consensus 314 ~G~~ag~vea~~r~p-~v~D--~~~l~~~--~s~~~~~~n~~~rvllv~~l~nlGs~igt~~~~ 372 (380)
T TIGR00261 314 TGMVAGLVEAYIRKP-TVKD--FENLQEA--ESIKEYFKNKVFRVLLVAILVNLGSTIGTIYGL 372 (380)
T ss_pred HHHHHHHHHhhccCC-CHHH--HHHHhhc--ccHHHHHhcchHHHHHHHHHhhhHHHHHHHHHH
Confidence 589999999777654 4433 2222222 23444333 566777888999999999988765
No 188
>PLN02189 cellulose synthase
Probab=41.44 E-value=24 Score=36.69 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=36.7
Q ss_pred cCccccccccccc---CCCceeecCCCCccccHHHHHHHh-hcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~---~~~~~~~Lp~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~ 217 (223)
+...|.||-++.. +++.-..+..|+-=.|..|.+-=- +.++.||-|++...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4568999999864 444455565688779999984322 25577999999875
No 189
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=41.36 E-value=15 Score=28.02 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=29.5
Q ss_pred cCcccccccccccCCC-ceeecCCCCccccHHHHHHHhhcCC--CCccccc
Q 027422 167 NEIGCSICLEKFEEGD-SARKLPSCGHCFHSECVDKWLTRNG--SCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~-~~~~Lp~CgH~FH~~CI~~WL~~~~--sCPvCR~ 214 (223)
++..|.+|...|..-. .-...+.|.|.+|..|-.. ....+ .|.+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 5679999998874322 2355667999999999655 11222 2888865
No 190
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=41.31 E-value=6.5 Score=23.82 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=19.7
Q ss_pred ecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 186 KLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 186 ~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
..|+||++||..=--+ +....|..|..++...
T Consensus 3 ~C~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNPP--KVEGVCDNCGGELVQR 34 (36)
T ss_dssp EETTTTEEEETTTB----SSTTBCTTTTEBEBEE
T ss_pred CcCCCCCccccccCCC--CCCCccCCCCCeeEeC
Confidence 4567999999542111 2445688888776543
No 191
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=41.29 E-value=14 Score=25.58 Aligned_cols=19 Identities=47% Similarity=0.586 Sum_probs=13.0
Q ss_pred ccccchhhhhHHHHHHHHH
Q 027422 75 FLHGAGIGAVAGAITALQL 93 (223)
Q Consensus 75 ~l~Ga~~GaiaGav~s~e~ 93 (223)
|+.|..+|++.|++.++-+
T Consensus 1 F~~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLF 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 5667777777777776433
No 192
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=40.11 E-value=8.5 Score=36.45 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=32.6
Q ss_pred cCcccccccccc-cCCCceeecCCCCccccHHHHHHHhh----cC----CCCccccccc
Q 027422 167 NEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLT----RN----GSCPVCRECV 216 (223)
Q Consensus 167 ~~~~C~ICle~f-~~~~~~~~Lp~CgH~FH~~CI~~WL~----~~----~sCPvCR~~v 216 (223)
.+..|.+|+.-- -....+..+.+|+-.||..|.....+ .. -.|-+|+...
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 346699998532 23334555567899999999887654 11 1388887643
No 193
>COG3134 Predicted outer membrane lipoprotein [Function unknown]
Probab=39.64 E-value=16 Score=29.52 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=23.3
Q ss_pred hcccchhhhccccCCcccccccccc--chhhhhHHHHHHHHHH
Q 027422 54 LGGAIVGTIFGAMKGQTTETGFLHG--AGIGAVAGAITALQLL 94 (223)
Q Consensus 54 ~~g~~~ga~~g~~~G~~~~~g~l~G--a~~GaiaGav~s~e~~ 94 (223)
++|+.+||++|.+.|.--.-|-=+- ..-||++|....-++-
T Consensus 71 iaGt~iGAv~GGl~G~Q~GgG~Gk~~aTvAGAv~GGyaGN~Vq 113 (179)
T COG3134 71 IAGSVLGAVAGGVIGHQFGGGRGKDVATVAGALGGGYAGNQVQ 113 (179)
T ss_pred chhhhhHHHhhhhccccccCCCcchhhhhhhhhcccccchhhh
Confidence 4788888888888876544332111 1334555555555543
No 194
>PRK04023 DNA polymerase II large subunit; Validated
Probab=39.18 E-value=19 Score=37.39 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=33.2
Q ss_pred cCcccccccccccCCCceeecCCCC-----ccccHHHHHHHhhcCCCCcccccccccC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCG-----HCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~Cg-----H~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
....|+-|=... ....+|+|| +.||..| .+......||-|...+...
T Consensus 625 g~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcC----CcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCcc
Confidence 456899997763 346788898 4699999 3333446699998887654
No 195
>PRK11280 hypothetical protein; Provisional
Probab=38.00 E-value=19 Score=29.63 Aligned_cols=44 Identities=25% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHhhcccchhhhccccCCccccccccccchhhhhHHHHHHHHHH
Q 027422 49 TCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLL 94 (223)
Q Consensus 49 t~~~a~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s~e~~ 94 (223)
|.+-|++|+++|..+|.=.|+.. +-+-|+..|++.|....-.+-
T Consensus 68 tv~Gav~Gg~~G~~iGgG~Gr~~--at~~Ga~~G~~~G~~i~~~~~ 111 (170)
T PRK11280 68 SVLGAVAGGVLGHQFGGGRGKDV--ATVAGALGGGYAGNQIQGGMQ 111 (170)
T ss_pred HHHHHHHHHHhhhhccCCCccHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 44455566666766665555443 345588888888888775553
No 196
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=37.94 E-value=14 Score=32.03 Aligned_cols=16 Identities=50% Similarity=0.787 Sum_probs=7.5
Q ss_pred cccchhhhccccCCcc
Q 027422 55 GGAIVGTIFGAMKGQT 70 (223)
Q Consensus 55 ~g~~~ga~~g~~~G~~ 70 (223)
+|+++|+++|++.|..
T Consensus 61 ~G~~~G~~~G~~~g~~ 76 (239)
T TIGR03789 61 VGAIIGGITGGLIGQA 76 (239)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4444444444444444
No 197
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.91 E-value=21 Score=31.07 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=21.4
Q ss_pred hcccchhhhccccCCccccccccccchhhhhHHHHHH
Q 027422 54 LGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITA 90 (223)
Q Consensus 54 ~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s 90 (223)
.+|+++|++.+...|.. |..+|-.+|+..|+..+
T Consensus 166 aaga~tgsvF~~~~gL~---g~aa~vilG~~lG~tv~ 199 (270)
T KOG4608|consen 166 AAGAVTGSVFRINVGLR---GLAAGVILGALLGTTVG 199 (270)
T ss_pred ccccceeeeEEeehhhH---HHhhcceeehhhcchHH
Confidence 48888888888877743 44445555555555443
No 198
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.40 E-value=11 Score=35.39 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=28.1
Q ss_pred cCcccccccccccCCCc----eeecCCCCccccHHHHHHHhhcC
Q 027422 167 NEIGCSICLEKFEEGDS----ARKLPSCGHCFHSECVDKWLTRN 206 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~----~~~Lp~CgH~FH~~CI~~WL~~~ 206 (223)
+...||.|....+...- ....++|.|.||..|+..|-...
T Consensus 225 ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 225 NTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred cCccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 44569999998876541 11222499999999988886553
No 199
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=37.34 E-value=18 Score=31.61 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=32.7
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcC--CCCcc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPV 211 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--~sCPv 211 (223)
+..|||=..++.+|..-+ +|+|+|-.+=|.+.+... -.||+
T Consensus 176 s~rdPis~~~I~nPviSk---kC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISK---KCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhchhhhc---CcCcchhhhhHHHHhccCceeeccc
Confidence 467999888888866554 799999999999998763 44776
No 200
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=37.11 E-value=22 Score=32.12 Aligned_cols=44 Identities=2% Similarity=-0.140 Sum_probs=31.9
Q ss_pred CcccccccccccCCCceeecCCCCc-cccHHHHHHHhhcCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH-~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
..+|..|-+.... +... .|+| .||.+|.. +....+||+|.....
T Consensus 343 ~~~~~~~~~~~~s---t~~~-~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 343 SLKGTSAGFGLLS---TIWS-GGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hcccccccCceee---eEee-cCCcccChhhhhh--cccCCccccccccce
Confidence 4668777655443 2333 5998 89999988 667889999987654
No 201
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=36.66 E-value=14 Score=32.99 Aligned_cols=51 Identities=18% Similarity=0.466 Sum_probs=31.4
Q ss_pred cCcccccccc-cccCCCceeecCCCCccccHHHHHHHhh-----cC--CCCcccccccc
Q 027422 167 NEIGCSICLE-KFEEGDSARKLPSCGHCFHSECVDKWLT-----RN--GSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle-~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-----~~--~sCPvCR~~v~ 217 (223)
+...|.+|.. +|..-+.-=...+||++||..|-..-+. .+ ..|+.|=..+.
T Consensus 167 ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 167 EATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred cceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 4578999988 5543221111337999999999665222 11 25888876664
No 202
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=36.15 E-value=19 Score=24.37 Aligned_cols=16 Identities=31% Similarity=0.710 Sum_probs=12.0
Q ss_pred cCCCCcccccccccCC
Q 027422 205 RNGSCPVCRECVCKDT 220 (223)
Q Consensus 205 ~~~sCPvCR~~v~~~~ 220 (223)
.|+.||+|-.+++++.
T Consensus 2 ~HkHC~~CG~~Ip~~~ 17 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDE 17 (59)
T ss_pred CCCcCCcCCCcCCcch
Confidence 4677888888887653
No 203
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=36.00 E-value=28 Score=31.48 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=32.9
Q ss_pred CcccccccccccCCC----------ceeecCCCCccccHHHHHHHhhcCCCCccccc
Q 027422 168 EIGCSICLEKFEEGD----------SARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 168 ~~~C~ICle~f~~~~----------~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
...|-.|+..|-.+. .....+.|...||.+|-.---+.-..||-|..
T Consensus 362 s~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~gCe~ 418 (421)
T COG5151 362 STHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIGCEL 418 (421)
T ss_pred CccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCCCcC
Confidence 467999998775442 12346679999999996654445567998854
No 204
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=35.81 E-value=39 Score=24.91 Aligned_cols=34 Identities=32% Similarity=0.744 Sum_probs=23.3
Q ss_pred cCcccccccccccCCCcee-ecCCCCccccHHHHHHH
Q 027422 167 NEIGCSICLEKFEEGDSAR-KLPSCGHCFHSECVDKW 202 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~-~Lp~CgH~FH~~CI~~W 202 (223)
....|.||... .+..+. .-+.|...||..|..+.
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 46799999887 333331 12248889999998764
No 205
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=35.81 E-value=13 Score=37.55 Aligned_cols=47 Identities=19% Similarity=0.406 Sum_probs=32.3
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh------cCCCCcccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT------RNGSCPVCREC 215 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~------~~~sCPvCR~~ 215 (223)
....|..|.....+ ..-+++.|+|.+|..|+..|.- .-..|+.|+..
T Consensus 228 ~~~mC~~C~~tlfn--~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 228 IREMCDRCETTLFN--IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred cchhhhhhcccccc--eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 45678888665432 3445778999999999999951 11347777654
No 206
>PLN02436 cellulose synthase A
Probab=35.39 E-value=34 Score=35.77 Aligned_cols=51 Identities=20% Similarity=0.447 Sum_probs=36.7
Q ss_pred cCcccccccccc---cCCCceeecCCCCccccHHHHHHHh-hcCCCCcccccccc
Q 027422 167 NEIGCSICLEKF---EEGDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f---~~~~~~~~Lp~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~ 217 (223)
....|.||-++. .+++.-..+..|+--.|..|.+-=- +.++.||-|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 456899999986 4555555565687779999984322 24567999999875
No 207
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.27 E-value=27 Score=23.54 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=24.0
Q ss_pred cCcccccccccccC--CCceeecCCCCccccHHHHH
Q 027422 167 NEIGCSICLEKFEE--GDSARKLPSCGHCFHSECVD 200 (223)
Q Consensus 167 ~~~~C~ICle~f~~--~~~~~~Lp~CgH~FH~~CI~ 200 (223)
....|+.|-..... ....-..|+||+.+|.+-.-
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~na 62 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNA 62 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHH
Confidence 45679999877766 44556677788888876443
No 208
>PRK02935 hypothetical protein; Provisional
Probab=35.23 E-value=28 Score=26.42 Aligned_cols=18 Identities=28% Similarity=0.515 Sum_probs=12.9
Q ss_pred hhcCCCCcccccccccCC
Q 027422 203 LTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 203 L~~~~sCPvCR~~v~~~~ 220 (223)
+.+...|+.|++|+.-+.
T Consensus 83 LGrvD~CM~C~~PLTLd~ 100 (110)
T PRK02935 83 LGRVDACMHCNQPLTLDR 100 (110)
T ss_pred ccceeecCcCCCcCCcCc
Confidence 445667899999887553
No 209
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=34.80 E-value=34 Score=30.24 Aligned_cols=43 Identities=33% Similarity=0.547 Sum_probs=27.9
Q ss_pred CcccccccccccCCCceeecCCCCc-cccHHHHHHH-hhcCCCCc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKW-LTRNGSCP 210 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH-~FH~~CI~~W-L~~~~sCP 210 (223)
-..|.||++--..+..-..|++=.- .=|.+|.++| +..+..||
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 3568888776555544333332222 5789999999 56778898
No 210
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=34.33 E-value=18 Score=30.86 Aligned_cols=36 Identities=42% Similarity=0.584 Sum_probs=17.4
Q ss_pred hhcccchhhhccccCCccccc--c-ccccchhhhhHHHH
Q 027422 53 ALGGAIVGTIFGAMKGQTTET--G-FLHGAGIGAVAGAI 88 (223)
Q Consensus 53 a~~g~~~ga~~g~~~G~~~~~--g-~l~Ga~~GaiaGav 88 (223)
|++|+.+|+.+|+..+-.+.. | -+-|+++|.++|+.
T Consensus 90 a~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ada~ 128 (215)
T PF05818_consen 90 ALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIADAM 128 (215)
T ss_pred HHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHHhhh
Confidence 445555555555544333331 1 13445566666544
No 211
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=34.18 E-value=30 Score=29.95 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=20.4
Q ss_pred ccHHHHHHHhhcCCCCcccccccccCC
Q 027422 194 FHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 194 FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
-|..|-.+--++-+.||+|+..-...+
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccCC
Confidence 567777777778899999988665443
No 212
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=33.76 E-value=39 Score=23.88 Aligned_cols=34 Identities=35% Similarity=0.802 Sum_probs=23.7
Q ss_pred ccCcccccccccccCCCce-eecCCCCccccHHHHHH
Q 027422 166 DNEIGCSICLEKFEEGDSA-RKLPSCGHCFHSECVDK 201 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~-~~Lp~CgH~FH~~CI~~ 201 (223)
.....|.+|... .|..+ -..++|...||..|...
T Consensus 34 ~~~~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 34 RRKLKCSICKKK--GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HhCCCCcCCCCC--CCeEEEEeCCCCCcEEChHHHcc
Confidence 356799999865 23333 23447999999999876
No 213
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=33.42 E-value=37 Score=30.38 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=28.3
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHhhcccchhhhccccCCccc
Q 027422 32 GTGVLIRAMKR-VLYAALTCIFALGGAIVGTIFGAMKGQTT 71 (223)
Q Consensus 32 ~~~~~~~~~~~-~~~~~~t~~~a~~g~~~ga~~g~~~G~~~ 71 (223)
|-+.+.|++-+ =+|-+|...+++.++++|..+||+.|...
T Consensus 129 gRDV~ARliygfRiSvLfgL~lT~~SaliGv~~GA~qGyfg 169 (341)
T COG4239 129 GRDVLARLIYGFRISVLFGLSLTLISALIGVLAGALQGYFG 169 (341)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 55667775544 35556677788888888888888877653
No 214
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=33.30 E-value=30 Score=22.10 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=7.6
Q ss_pred cccccccccccCCC
Q 027422 169 IGCSICLEKFEEGD 182 (223)
Q Consensus 169 ~~C~ICle~f~~~~ 182 (223)
..|..|...+..+.
T Consensus 27 f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 27 FKCSKCGKPLNDGD 40 (58)
T ss_dssp SBETTTTCBTTTSS
T ss_pred cccCCCCCccCCCe
Confidence 45566655555544
No 215
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.98 E-value=13 Score=33.39 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=28.4
Q ss_pred cCcccccccccccCCCceeec---CCCCccccHHHHHHHhhcCCCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKL---PSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~L---p~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
....||||=..-.... ++.. ..=.|.+|.-|-.+|--....||.|-.
T Consensus 183 ~~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3458999976542211 1110 012245667788888777888999975
No 216
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.85 E-value=22 Score=26.30 Aligned_cols=11 Identities=27% Similarity=1.060 Sum_probs=10.3
Q ss_pred ccHHHHHHHhh
Q 027422 194 FHSECVDKWLT 204 (223)
Q Consensus 194 FH~~CI~~WL~ 204 (223)
||..|+.+|++
T Consensus 43 FCRNCLs~Wy~ 53 (104)
T COG3492 43 FCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 217
>PF14353 CpXC: CpXC protein
Probab=32.78 E-value=26 Score=26.76 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=6.9
Q ss_pred cccccccccccC
Q 027422 169 IGCSICLEKFEE 180 (223)
Q Consensus 169 ~~C~ICle~f~~ 180 (223)
.+||-|...+..
T Consensus 2 itCP~C~~~~~~ 13 (128)
T PF14353_consen 2 ITCPHCGHEFEF 13 (128)
T ss_pred cCCCCCCCeeEE
Confidence 356666665543
No 218
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=32.48 E-value=41 Score=35.28 Aligned_cols=51 Identities=22% Similarity=0.444 Sum_probs=35.5
Q ss_pred cCccccccccccc---CCCceeecCCCCccccHHHHHH-HhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDK-WLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~---~~~~~~~Lp~CgH~FH~~CI~~-WL~~~~sCPvCR~~v~ 217 (223)
+...|-||=++.. +++.-..+..|+-=-|..|.+- .-+.++.||-|++...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4568999998864 3444444556777799999842 2235577999999875
No 219
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.83 E-value=14 Score=22.18 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=8.1
Q ss_pred cCCCCccccccc
Q 027422 205 RNGSCPVCRECV 216 (223)
Q Consensus 205 ~~~sCPvCR~~v 216 (223)
....||.|..++
T Consensus 25 ~~~~CP~Cg~~~ 36 (41)
T smart00834 25 PLATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCCcc
Confidence 345688888754
No 220
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=31.70 E-value=15 Score=33.29 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=31.8
Q ss_pred cCcccccccccccCCCceeecCCCCc-cccHHHHHHH-hhcCCCCccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKW-LTRNGSCPVCRECV 216 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH-~FH~~CI~~W-L~~~~sCPvCR~~v 216 (223)
....|.+|+. +....... +|+| +||..|..+- .++..+||+|...+
T Consensus 135 ~ti~~iqq~t---nt~I~T~v-~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~ 182 (394)
T KOG2113|consen 135 ATIKRIQQFT---NTYIATPV-RCGEPVFCVTGAPKNCVKRARSCEIEQTAV 182 (394)
T ss_pred Cccchheecc---cceEeeec-cCCCceEEEecCCcchhhhccccchhhhhh
Confidence 4466777744 44444444 4998 9999997665 66778899997654
No 221
>COG4803 Predicted membrane protein [Function unknown]
Probab=30.99 E-value=5.5 Score=32.19 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=6.1
Q ss_pred cccchhhhccccCC
Q 027422 55 GGAIVGTIFGAMKG 68 (223)
Q Consensus 55 ~g~~~ga~~g~~~G 68 (223)
+|++-|++-|.+.|
T Consensus 60 aGa~sGafWG~LiG 73 (170)
T COG4803 60 AGAVSGAFWGMLIG 73 (170)
T ss_pred hccccccHHHHHHH
Confidence 34444444444444
No 222
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.82 E-value=17 Score=29.53 Aligned_cols=45 Identities=36% Similarity=0.529 Sum_probs=28.2
Q ss_pred ccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 172 SICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 172 ~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
.||+.--........-|.=.+-||..|-.+-+ ..||.|..+|..+
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCCc
Confidence 36666554444444444445678888877643 4588888888643
No 223
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.98 E-value=41 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=20.7
Q ss_pred ccHHHHHHHhhcCCCCcccccccccCC
Q 027422 194 FHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 194 FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
-|..|-..--++-+.||+|+..-...+
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCC
Confidence 577888887778899999998655443
No 224
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=29.95 E-value=24 Score=19.64 Aligned_cols=9 Identities=56% Similarity=1.176 Sum_probs=6.9
Q ss_pred CCccccccc
Q 027422 208 SCPVCRECV 216 (223)
Q Consensus 208 sCPvCR~~v 216 (223)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 588887776
No 225
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.91 E-value=34 Score=24.22 Aligned_cols=25 Identities=24% Similarity=0.658 Sum_probs=19.9
Q ss_pred CccccHHHHHHHhhcCCCCcccccccc
Q 027422 191 GHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 191 gH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
.|.||.+|.+.- -+..||.|-..+.
T Consensus 28 EcTFCadCae~~--l~g~CPnCGGelv 52 (84)
T COG3813 28 ECTFCADCAENR--LHGLCPNCGGELV 52 (84)
T ss_pred eeehhHhHHHHh--hcCcCCCCCchhh
Confidence 489999999874 4788999976654
No 226
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.89 E-value=17 Score=32.76 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=29.0
Q ss_pred cCcccccccccccCCCceeec-C-CCCccccHHHHHHHhhcCCCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKL-P-SCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~L-p-~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
....||||=..-.... ++.- . .=.|..|.-|-..|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4678999976543221 1000 0 12356677788888777888999975
No 227
>PRK01343 zinc-binding protein; Provisional
Probab=29.89 E-value=38 Score=22.80 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=4.5
Q ss_pred CCccccccc
Q 027422 208 SCPVCRECV 216 (223)
Q Consensus 208 sCPvCR~~v 216 (223)
.||+|++++
T Consensus 11 ~CP~C~k~~ 19 (57)
T PRK01343 11 PCPECGKPS 19 (57)
T ss_pred cCCCCCCcC
Confidence 355555543
No 228
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=29.89 E-value=38 Score=20.06 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=6.0
Q ss_pred ccccccccccC
Q 027422 170 GCSICLEKFEE 180 (223)
Q Consensus 170 ~C~ICle~f~~ 180 (223)
.||-|-..|..
T Consensus 4 ~CP~C~~~~~v 14 (38)
T TIGR02098 4 QCPNCKTSFRV 14 (38)
T ss_pred ECCCCCCEEEe
Confidence 56666655443
No 229
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=29.80 E-value=30 Score=19.75 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=18.3
Q ss_pred ccccccccccCCCceeecCCCCccccHHHH
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECV 199 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI 199 (223)
.|.+|-++..... .-....|...+|..|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5888877665543 4333457777777763
No 230
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=29.14 E-value=15 Score=32.73 Aligned_cols=12 Identities=58% Similarity=0.894 Sum_probs=7.9
Q ss_pred ccchhhhhHHHH
Q 027422 77 HGAGIGAVAGAI 88 (223)
Q Consensus 77 ~Ga~~GaiaGav 88 (223)
-|+.+|++.|++
T Consensus 173 ~gaaiGal~Gg~ 184 (292)
T PF11981_consen 173 AGAAIGALAGGA 184 (292)
T ss_pred HHHHHHHHHHHH
Confidence 366677777666
No 231
>PLN02248 cellulose synthase-like protein
Probab=28.66 E-value=48 Score=34.91 Aligned_cols=30 Identities=27% Similarity=0.588 Sum_probs=26.9
Q ss_pred CCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 189 SCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 189 ~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
.|++..|.+|...-++....||-|+.+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKV 178 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccc
Confidence 488999999999999999999999998753
No 232
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=28.35 E-value=1.4e+02 Score=21.06 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=23.5
Q ss_pred HhhcchHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHHHHHhhccc
Q 027422 12 MSLTCKETVSLWLFATM-CAFGTGVLIRAMKRVLYAALTCIFALGGA 57 (223)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~a~~g~ 57 (223)
+++.|+ |.+-+.+.. ++...|-+..-...+....+|++|.+..+
T Consensus 24 A~lTCP--CHLpil~~vLaGTaaGafl~e~w~iaal~l~~LF~lsl~ 68 (75)
T PF05052_consen 24 ALLTCP--CHLPILAPVLAGTAAGAFLGEHWVIAALTLTGLFVLSLT 68 (75)
T ss_pred HHhhCc--chHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788 554333222 44555544433455555566777766543
No 233
>PLN02400 cellulose synthase
Probab=28.25 E-value=41 Score=35.24 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=35.2
Q ss_pred cCccccccccccc---CCCceeecCCCCccccHHHHHH-HhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDK-WLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~---~~~~~~~Lp~CgH~FH~~CI~~-WL~~~~sCPvCR~~v~ 217 (223)
+...|-||=++.. +++.-..+..|+-=-|..|.+- .-+.++.||-||+...
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 4568999998864 3444444456777789999842 1234567999999875
No 234
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=27.84 E-value=38 Score=29.44 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHH---HH--HHHHHHhhcccchhhhccccCCccccccccccchhhhhHHHHHHHHH
Q 027422 32 GTGVLIRAMKRVL---YA--ALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQL 93 (223)
Q Consensus 32 ~~~~~~~~~~~~~---~~--~~t~~~a~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s~e~ 93 (223)
|-+.++|++-+.. .+ +.|+.-++.|.++|+++|...| +|.+-++.+-..+.|+.-
T Consensus 84 GRDvlSRli~Gt~~t~G~allvt~~a~l~g~~lGi~AG~t~g-------l~s~~lnHilDt~lSiPs 143 (296)
T COG4171 84 GRDVLSRLISGTAPTVGGALLVTLAATICGGVLGIFAGATHG-------LRSAVLNHILDTLLSIPS 143 (296)
T ss_pred hHHHHHHHHccCccccchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHH
Confidence 6677889887643 22 2455556678888888777666 455567777777766554
No 235
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=27.54 E-value=32 Score=27.73 Aligned_cols=26 Identities=35% Similarity=0.879 Sum_probs=13.8
Q ss_pred cccccccccccC-------CCceeecCCCCcccc
Q 027422 169 IGCSICLEKFEE-------GDSARKLPSCGHCFH 195 (223)
Q Consensus 169 ~~C~ICle~f~~-------~~~~~~Lp~CgH~FH 195 (223)
.-| +|.++-.. .....+.|.|||+|-
T Consensus 112 VGC-~c~eD~~~V~Wmwl~Kge~~rc~eCG~~fk 144 (153)
T KOG3352|consen 112 VGC-GCEEDSHAVVWMWLEKGETQRCPECGHYFK 144 (153)
T ss_pred Eee-cccCCCcceEEEEEEcCCcccCCcccceEE
Confidence 457 77665322 112334566888764
No 236
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=27.53 E-value=31 Score=29.99 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=31.2
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcC--CCCc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCP 210 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--~sCP 210 (223)
+..|||=++....+..-+ +|+|.|-.+-|.+.+... ..||
T Consensus 189 ~nrCpitl~p~~~pils~---kcnh~~e~D~I~~~lq~~~trvcp 230 (275)
T COG5627 189 SNRCPITLNPDFYPILSS---KCNHKPEMDLINKKLQVECTRVCP 230 (275)
T ss_pred cccCCcccCcchhHHHHh---hhcccccHHHHHHHhcCCceeecc
Confidence 467999888877655443 799999999999999844 4476
No 237
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=27.38 E-value=54 Score=34.31 Aligned_cols=51 Identities=20% Similarity=0.451 Sum_probs=35.6
Q ss_pred cCccccccccccc---CCCceeecCCCCccccHHHHHHHh-hcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~---~~~~~~~Lp~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~ 217 (223)
+...|-||-++.. +++.-..+..|+--.|..|.+-=. +.++.||-|+++..
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 5578999998864 344444455677779999984322 24567999999876
No 238
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=27.36 E-value=66 Score=26.45 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=13.0
Q ss_pred hcCCCCcccccccccCC
Q 027422 204 TRNGSCPVCRECVCKDT 220 (223)
Q Consensus 204 ~~~~sCPvCR~~v~~~~ 220 (223)
.....||.|...+...+
T Consensus 134 ~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 134 EYGFRCPQCGEMLEEYD 150 (178)
T ss_pred hcCCcCCCCCCCCeecc
Confidence 45788999998887554
No 239
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=27.17 E-value=36 Score=29.55 Aligned_cols=10 Identities=60% Similarity=0.966 Sum_probs=4.0
Q ss_pred ccchhhhccc
Q 027422 56 GAIVGTIFGA 65 (223)
Q Consensus 56 g~~~ga~~g~ 65 (223)
|++.||.+|+
T Consensus 119 ga~~Gaa~G~ 128 (243)
T PRK13731 119 GAAVGAALGA 128 (243)
T ss_pred hHHHHHHhhh
Confidence 3444444433
No 240
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=26.97 E-value=35 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=13.5
Q ss_pred cCCCCcccccccccCCC
Q 027422 205 RNGSCPVCRECVCKDTD 221 (223)
Q Consensus 205 ~~~sCPvCR~~v~~~~~ 221 (223)
.|..||+|-+.+++++.
T Consensus 7 PH~HC~VCg~aIp~de~ 23 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CCccccccCCcCCCccc
Confidence 46779999999987753
No 241
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=26.30 E-value=18 Score=26.79 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=13.9
Q ss_pred cchhhhccccCCcccccc-ccccchhhhhHHHH
Q 027422 57 AIVGTIFGAMKGQTTETG-FLHGAGIGAVAGAI 88 (223)
Q Consensus 57 ~~~ga~~g~~~G~~~~~g-~l~Ga~~GaiaGav 88 (223)
.++|++.|++....+.++ ....+-.|++||+.
T Consensus 41 ~viGilLG~~~~~~~~~~~l~~~~~aG~laGlA 73 (93)
T PF06946_consen 41 VVIGILLGAAAYPLTGDGNLALMAWAGGLAGLA 73 (93)
T ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhh
Confidence 334444444444444333 23333445555544
No 242
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=26.27 E-value=46 Score=22.65 Aligned_cols=11 Identities=18% Similarity=0.776 Sum_probs=5.2
Q ss_pred Ccccccccccc
Q 027422 168 EIGCSICLEKF 178 (223)
Q Consensus 168 ~~~C~ICle~f 178 (223)
-..|++|..++
T Consensus 7 iL~Cp~ck~pL 17 (68)
T PF03966_consen 7 ILACPVCKGPL 17 (68)
T ss_dssp TBB-TTTSSBE
T ss_pred hhcCCCCCCcc
Confidence 34566665544
No 243
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.67 E-value=30 Score=36.79 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=22.5
Q ss_pred cccccccccccCCCceeecCCCCcc-----ccHHHHHHHhhc---CCCCcccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHC-----FHSECVDKWLTR---NGSCPVCRECVC 217 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~-----FH~~CI~~WL~~---~~sCPvCR~~v~ 217 (223)
..||=|-..... ..+|.||+. .|..|-.+--.. ...||.|..++.
T Consensus 668 rkCPkCG~~t~~----~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 668 RRCPSCGTETYE----NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EECCCCCCcccc----ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 567777654322 256667743 355554331111 124666666554
No 244
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=25.60 E-value=10 Score=24.79 Aligned_cols=34 Identities=32% Similarity=0.672 Sum_probs=18.9
Q ss_pred ccccc--ccccccCCCc--e--eecCCCCccccHHHHHHH
Q 027422 169 IGCSI--CLEKFEEGDS--A--RKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 169 ~~C~I--Cle~f~~~~~--~--~~Lp~CgH~FH~~CI~~W 202 (223)
..||- |-..+..... . ...+.|++.||..|-.+|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 46766 7655543332 1 456669999999998877
No 245
>PF07863 CtnDOT_TraJ: Homologues of TraJ from Bacteroides conjugative transposon; InterPro: IPR012424 Proteins in this entry are designated TraJ and are found in a proposed transfer region of a class of conjugative transposon found primarily in the Bacteroides lineage. They are related to conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6. This entry represents the C-terminal domain of these proteins.
Probab=25.56 E-value=59 Score=22.67 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=17.2
Q ss_pred hcchHHHHHHHHHhhccchhHHHHHHHHHH
Q 027422 14 LTCKETVSLWLFATMCAFGTGVLIRAMKRV 43 (223)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (223)
|=|-+.|+-|.. .+.|.+-+.|-+...
T Consensus 9 YFtVPtVA~wII---~AGG~g~~~~~vn~~ 35 (68)
T PF07863_consen 9 YFTVPTVANWII---QAGGGGAYGRNVNQT 35 (68)
T ss_pred EEEccchhheee---ecCchhHHHHHHHHH
Confidence 446788888888 556666655544333
No 246
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.38 E-value=41 Score=33.71 Aligned_cols=49 Identities=27% Similarity=0.581 Sum_probs=31.5
Q ss_pred CcccccccccccCCCceeec------CCCCcc--------------------ccHHHHHHHhh--------cCCCCcccc
Q 027422 168 EIGCSICLEKFEEGDSARKL------PSCGHC--------------------FHSECVDKWLT--------RNGSCPVCR 213 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~L------p~CgH~--------------------FH~~CI~~WL~--------~~~sCPvCR 213 (223)
--.|+=|++++.++..-|.+ .+||-. .|..|-+++-. +...||.|-
T Consensus 101 ~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CG 180 (750)
T COG0068 101 AATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCG 180 (750)
T ss_pred hhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccC
Confidence 35799999998887754432 245544 57788777643 234588886
Q ss_pred ccc
Q 027422 214 ECV 216 (223)
Q Consensus 214 ~~v 216 (223)
-.+
T Consensus 181 P~~ 183 (750)
T COG0068 181 PHL 183 (750)
T ss_pred CCe
Confidence 544
No 247
>PF12773 DZR: Double zinc ribbon
Probab=25.37 E-value=65 Score=20.16 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=7.2
Q ss_pred CCCccccccccc
Q 027422 207 GSCPVCRECVCK 218 (223)
Q Consensus 207 ~sCPvCR~~v~~ 218 (223)
..||.|...+..
T Consensus 30 ~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 30 KICPNCGAENPP 41 (50)
T ss_pred CCCcCCcCCCcC
Confidence 457777766443
No 248
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=25.23 E-value=15 Score=32.79 Aligned_cols=37 Identities=32% Similarity=0.734 Sum_probs=28.1
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcC
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN 206 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~ 206 (223)
..|.+|++++..+....... |.-.||..|+-.|+...
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhh-ccccccccccccccccc
Confidence 48999999998644444443 66699999999998754
No 249
>PLN02195 cellulose synthase A
Probab=25.10 E-value=83 Score=32.74 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=35.9
Q ss_pred cCccccccccccc---CCCceeecCCCCccccHHHHHHHh-hcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~---~~~~~~~Lp~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~~ 218 (223)
....|.||-++.. +++.-..+..|+-=-|..|.+-=- +.++.||-|++...+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 3468999988664 334444455688889999984222 245679999998873
No 250
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=24.73 E-value=64 Score=19.53 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=24.6
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHH
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK 201 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~ 201 (223)
....|.+|.+.+.........+.|+=..|..|..+
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 34579999888765332333446888899999876
No 251
>PRK00420 hypothetical protein; Validated
Probab=24.56 E-value=55 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=13.4
Q ss_pred CcccccccccccC-CCceeecCCCCc
Q 027422 168 EIGCSICLEKFEE-GDSARKLPSCGH 192 (223)
Q Consensus 168 ~~~C~ICle~f~~-~~~~~~Lp~CgH 192 (223)
...||+|-.++.. ......+|.||.
T Consensus 23 ~~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 23 SKHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred cCCCCCCCCcceecCCCceECCCCCC
Confidence 4688888766543 222333444443
No 252
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=24.53 E-value=35 Score=19.36 Aligned_cols=12 Identities=33% Similarity=1.085 Sum_probs=5.6
Q ss_pred CCcccccccccC
Q 027422 208 SCPVCRECVCKD 219 (223)
Q Consensus 208 sCPvCR~~v~~~ 219 (223)
.||.|...+...
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 388888877643
No 253
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.50 E-value=13 Score=20.15 Aligned_cols=7 Identities=29% Similarity=0.828 Sum_probs=2.7
Q ss_pred ccccccc
Q 027422 171 CSICLEK 177 (223)
Q Consensus 171 C~ICle~ 177 (223)
|+-|-.+
T Consensus 2 Cp~CG~~ 8 (23)
T PF13240_consen 2 CPNCGAE 8 (23)
T ss_pred CcccCCC
Confidence 3334333
No 254
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=24.41 E-value=45 Score=26.62 Aligned_cols=35 Identities=34% Similarity=0.624 Sum_probs=21.4
Q ss_pred hcccchhhhccccCCccccccccccchhhhhHHHHHH
Q 027422 54 LGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITA 90 (223)
Q Consensus 54 ~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s 90 (223)
++|++-|+.+|.+.|-+-.-| +|-.+.++.||+..
T Consensus 61 vvG~igG~~lGG~~g~~iGgG--~G~~~At~~GAvAG 95 (154)
T COG3133 61 VIGAIGGAVLGGFLGNTIGGG--TGRSLATAAGAVAG 95 (154)
T ss_pred cceeeccccccceeeccccCC--cchHHHHHHhHhhh
Confidence 356666666666655554433 46677777777754
No 255
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=24.17 E-value=31 Score=22.10 Aligned_cols=41 Identities=34% Similarity=0.344 Sum_probs=23.1
Q ss_pred HhhcccchhhhccccCCccccccccccchhhhhHHHHHHHHHH
Q 027422 52 FALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLL 94 (223)
Q Consensus 52 ~a~~g~~~ga~~g~~~G~~~~~g~l~Ga~~GaiaGav~s~e~~ 94 (223)
.+++||++|......-|. + .++.-+.-+.|+-||+.-+-++
T Consensus 3 ~GiiGa~vGg~l~~~lg~-~-~~~~~~~~i~aviGAiill~i~ 43 (48)
T PF04226_consen 3 LGIIGAFVGGWLFGLLGI-N-GGGSWGSFIVAVIGAIILLFIY 43 (48)
T ss_pred eehHHHHHHHHHHHHhcc-c-CCchHHHHHHHHHHHHHHHHHH
Confidence 345666666655555555 2 2333344577777887655443
No 256
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=23.72 E-value=23 Score=22.56 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=12.9
Q ss_pred CCCCccccHHHHHHHhhcCCCCccccc
Q 027422 188 PSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 188 p~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
++|+|.|-..--.. -.....||.|..
T Consensus 9 ~~Cg~~fe~~~~~~-~~~~~~CP~Cg~ 34 (52)
T TIGR02605 9 TACGHRFEVLQKMS-DDPLATCPECGG 34 (52)
T ss_pred CCCCCEeEEEEecC-CCCCCCCCCCCC
Confidence 35777655321000 012346999986
No 257
>PRK11827 hypothetical protein; Provisional
Probab=23.72 E-value=30 Score=23.52 Aligned_cols=15 Identities=33% Similarity=0.631 Sum_probs=6.8
Q ss_pred hhcCCCCcccccccc
Q 027422 203 LTRNGSCPVCRECVC 217 (223)
Q Consensus 203 L~~~~sCPvCR~~v~ 217 (223)
|..--.||+|+.++.
T Consensus 5 LLeILaCP~ckg~L~ 19 (60)
T PRK11827 5 LLEIIACPVCNGKLW 19 (60)
T ss_pred HHhheECCCCCCcCe
Confidence 333334555555443
No 258
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=23.66 E-value=47 Score=24.43 Aligned_cols=39 Identities=26% Similarity=0.628 Sum_probs=28.9
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
...|.||-..... =+|.||..|..+ +..|.+|-..+.+-
T Consensus 44 ~~~C~~CK~~v~q---------~g~~YCq~CAYk----kGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQ---------PGAKYCQTCAYK----KGICAMCGKKILDT 82 (90)
T ss_pred Ccccccccccccc---------CCCccChhhhcc----cCcccccCCeeccc
Confidence 4689999665332 377899999654 78999999888543
No 259
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=23.29 E-value=36 Score=22.88 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=4.5
Q ss_pred CCccccccccc
Q 027422 208 SCPVCRECVCK 218 (223)
Q Consensus 208 sCPvCR~~v~~ 218 (223)
.||+|++++..
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 47777766654
No 260
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.26 E-value=50 Score=32.86 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=27.0
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 214 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~ 214 (223)
..|-+|...=.....+..+..|+-.||..|.+. -.+.||+|--
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~---~~~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACSLD---YASISEVCGP 697 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhhhh---hhccCcccCc
Confidence 468889664332222322225888888888555 4777999943
No 261
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=23.11 E-value=83 Score=25.27 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=12.9
Q ss_pred cCCCCcccccccccCCC
Q 027422 205 RNGSCPVCRECVCKDTD 221 (223)
Q Consensus 205 ~~~sCPvCR~~v~~~~~ 221 (223)
....||.|...+...++
T Consensus 127 ~~F~Cp~Cg~~L~~~dn 143 (158)
T TIGR00373 127 LNFTCPRCGAMLDYLDN 143 (158)
T ss_pred cCCcCCCCCCEeeeccC
Confidence 47889999998875543
No 262
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.80 E-value=47 Score=28.03 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.0
Q ss_pred cCcccccccccccCC
Q 027422 167 NEIGCSICLEKFEEG 181 (223)
Q Consensus 167 ~~~~C~ICle~f~~~ 181 (223)
....||+|-.+|...
T Consensus 4 k~~~CPvC~~~F~~~ 18 (214)
T PF09986_consen 4 KKITCPVCGKEFKTK 18 (214)
T ss_pred CceECCCCCCeeeee
Confidence 457899999998754
No 263
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.79 E-value=14 Score=28.79 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=14.5
Q ss_pred hhcccchhhhccccCCcccccc
Q 027422 53 ALGGAIVGTIFGAMKGQTTETG 74 (223)
Q Consensus 53 a~~g~~~ga~~g~~~G~~~~~g 74 (223)
|++|.++|.|+|.+.++.+..+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4566677777777776666544
No 264
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=22.77 E-value=2.7e+02 Score=25.43 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=26.6
Q ss_pred HHHHhhcccchhhhcc--ccCCcc-ccccccccchhhhhHHHHHHH
Q 027422 49 TCIFALGGAIVGTIFG--AMKGQT-TETGFLHGAGIGAVAGAITAL 91 (223)
Q Consensus 49 t~~~a~~g~~~ga~~g--~~~G~~-~~~g~l~Ga~~GaiaGav~s~ 91 (223)
-.+|-+.|+.+|.+.. .+.... .+++++...++.|+.||++..
T Consensus 7 ~l~~~i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~ 52 (356)
T COG4956 7 ILLFIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFF 52 (356)
T ss_pred HHHHHHHHhhhhHhhHHHHHhhcCcccchhhccHHHHHHHHHHHHH
Confidence 3344445555664443 122222 367889999999999998754
No 265
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=22.15 E-value=47 Score=28.07 Aligned_cols=22 Identities=27% Similarity=0.664 Sum_probs=14.8
Q ss_pred HHHHHHHhh-cCCCCcccccccc
Q 027422 196 SECVDKWLT-RNGSCPVCRECVC 217 (223)
Q Consensus 196 ~~CI~~WL~-~~~sCPvCR~~v~ 217 (223)
..||++--. ..+-||+||.+..
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL 119 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYL 119 (239)
T ss_pred hHHHhhcCeecCCCCCccccceE
Confidence 468877533 4456999998643
No 266
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=22.10 E-value=23 Score=31.69 Aligned_cols=44 Identities=23% Similarity=0.568 Sum_probs=29.1
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCCC
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTD 221 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~~ 221 (223)
...|+-|.+-+-....+|+- =.|+||..|.. |-+|++.+..-++
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~--------C~iC~R~L~TGdE 135 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCFA--------CFICKRQLATGDE 135 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhhh--------hHhhhcccccCCe
Confidence 46789998877665555533 46888888864 5666666554433
No 267
>COG1397 DraG ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=21.88 E-value=38 Score=30.61 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=14.7
Q ss_pred cccchhhhccccCCcccc
Q 027422 55 GGAIVGTIFGAMKGQTTE 72 (223)
Q Consensus 55 ~g~~~ga~~g~~~G~~~~ 72 (223)
-|+++|+++|-.-|.++|
T Consensus 9 lg~l~G~a~GDAlG~pvE 26 (314)
T COG1397 9 LGALLGAALGDALGMPVE 26 (314)
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 367888888888888887
No 268
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.52 E-value=36 Score=22.66 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=7.1
Q ss_pred hhhhhHHHHHHH
Q 027422 80 GIGAVAGAITAL 91 (223)
Q Consensus 80 ~~GaiaGav~s~ 91 (223)
-+++++|++.+.
T Consensus 15 t~aa~a~av~~~ 26 (54)
T PF11240_consen 15 TLAAIAGAVFTF 26 (54)
T ss_pred HHHHHHHHHHHH
Confidence 345666666654
No 269
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=21.37 E-value=53 Score=33.56 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=25.3
Q ss_pred cccccccccccCCC---ceee--cCCCCccccHHHHHHHh
Q 027422 169 IGCSICLEKFEEGD---SARK--LPSCGHCFHSECVDKWL 203 (223)
Q Consensus 169 ~~C~ICle~f~~~~---~~~~--Lp~CgH~FH~~CI~~WL 203 (223)
..|..|...|..-. ..|+ +.+||++||..|-.+..
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 46999999995321 1233 45799999999987764
No 270
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=21.31 E-value=44 Score=22.72 Aligned_cols=12 Identities=42% Similarity=1.063 Sum_probs=8.7
Q ss_pred CCcccccccccC
Q 027422 208 SCPVCRECVCKD 219 (223)
Q Consensus 208 sCPvCR~~v~~~ 219 (223)
.||+||.++...
T Consensus 10 aCP~~kg~L~~~ 21 (60)
T COG2835 10 ACPVCKGPLVYD 21 (60)
T ss_pred eccCcCCcceEe
Confidence 488888886544
No 271
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=21.17 E-value=40 Score=31.51 Aligned_cols=33 Identities=18% Similarity=0.611 Sum_probs=22.8
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHH
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~W 202 (223)
..+|+||+-++-......+ -|....|..|..+.
T Consensus 74 ~~ecpicflyyps~~n~~r--cC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVR--CCSETICGECFAPF 106 (482)
T ss_pred cccCceeeeecccccchhh--hhccchhhhheecc
Confidence 3689999988765332221 47788888887764
No 272
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=21.13 E-value=70 Score=24.58 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=21.4
Q ss_pred CCceeecCCCCc---cccHHHHHHHhhcC---CCCccccccccc
Q 027422 181 GDSARKLPSCGH---CFHSECVDKWLTRN---GSCPVCRECVCK 218 (223)
Q Consensus 181 ~~~~~~Lp~CgH---~FH~~CI~~WL~~~---~sCPvCR~~v~~ 218 (223)
+..-++.|+||| .||..=+..-=+.+ -+||-|......
T Consensus 71 a~I~~kCpkCghe~m~Y~T~QlRSADEGQTVFYTC~kC~~k~~e 114 (116)
T KOG2907|consen 71 AVIKHKCPKCGHEEMSYHTLQLRSADEGQTVFYTCPKCKYKFTE 114 (116)
T ss_pred cchhccCcccCCchhhhhhhhcccccCCceEEEEcCccceeeec
Confidence 334466788998 56655433321122 149999876544
No 273
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=21.13 E-value=1.4e+02 Score=24.88 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=8.2
Q ss_pred CCCCCCHHHHhcCCc
Q 027422 140 GVKGLSEDMIQKLPE 154 (223)
Q Consensus 140 ~~~g~s~~~i~~lp~ 154 (223)
..+|++++..+++.+
T Consensus 90 ~~~Gl~~~~a~~i~~ 104 (213)
T PF01988_consen 90 RAKGLSEEDAEEIAE 104 (213)
T ss_pred HHCCCCHHHHHHHHH
Confidence 345666665555433
No 274
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=20.84 E-value=54 Score=25.81 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=12.8
Q ss_pred CcccccccccccCCCceeecCCCCc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGH 192 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH 192 (223)
+..||.|-.++...+--..+|.|+|
T Consensus 28 ~~hCp~Cg~PLF~KdG~v~CPvC~~ 52 (131)
T COG1645 28 AKHCPKCGTPLFRKDGEVFCPVCGY 52 (131)
T ss_pred HhhCcccCCcceeeCCeEECCCCCc
Confidence 3567777665544333333444444
No 275
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=20.66 E-value=89 Score=27.83 Aligned_cols=30 Identities=23% Similarity=0.530 Sum_probs=14.8
Q ss_pred cccccccccccCC---CceeecCCCCccccHHH
Q 027422 169 IGCSICLEKFEEG---DSARKLPSCGHCFHSEC 198 (223)
Q Consensus 169 ~~C~ICle~f~~~---~~~~~Lp~CgH~FH~~C 198 (223)
..||-|-+-+... .....+|+|+|.|+..-
T Consensus 29 ~KCp~c~~~~y~~eL~~n~~vcp~c~~h~ri~A 61 (294)
T COG0777 29 TKCPSCGEMLYRKELESNLKVCPKCGHHMRISA 61 (294)
T ss_pred eECCCccceeeHHHHHhhhhcccccCcccccCH
Confidence 4566665443222 12344556666655543
No 276
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=20.65 E-value=57 Score=22.33 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.3
Q ss_pred CCCCcccccccc
Q 027422 206 NGSCPVCRECVC 217 (223)
Q Consensus 206 ~~sCPvCR~~v~ 217 (223)
...||+|++++.
T Consensus 6 ~v~CP~C~k~~~ 17 (62)
T PRK00418 6 TVNCPTCGKPVE 17 (62)
T ss_pred cccCCCCCCccc
Confidence 456999999875
No 277
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=20.59 E-value=61 Score=24.51 Aligned_cols=32 Identities=19% Similarity=0.508 Sum_probs=18.7
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHH----HHHHhh
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSEC----VDKWLT 204 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~C----I~~WL~ 204 (223)
....|+=|-... .... +|+|.+|..| -.+|+.
T Consensus 41 ~~~~C~~Cg~~~-----~~~~-SCk~R~CP~C~~~~~~~W~~ 76 (111)
T PF14319_consen 41 HRYRCEDCGHEK-----IVYN-SCKNRHCPSCQAKATEQWIE 76 (111)
T ss_pred ceeecCCCCceE-----EecC-cccCcCCCCCCChHHHHHHH
Confidence 346677774431 1112 5888888887 346765
No 278
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=20.54 E-value=42 Score=32.74 Aligned_cols=35 Identities=43% Similarity=0.760 Sum_probs=23.5
Q ss_pred cCcccccccccccCC-----C-----ceeecCCCCccccHHHHHHH
Q 027422 167 NEIGCSICLEKFEEG-----D-----SARKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 167 ~~~~C~ICle~f~~~-----~-----~~~~Lp~CgH~FH~~CI~~W 202 (223)
....|+||.+.|+.- + ....+. =|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 457899999988631 0 122232 5889999998754
No 279
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.50 E-value=24 Score=28.02 Aligned_cols=50 Identities=24% Similarity=0.596 Sum_probs=24.7
Q ss_pred cccCccccccccc-ccCCCceeecCCCCccccHHHHHHHhhcCC----CCcccccc
Q 027422 165 LDNEIGCSICLEK-FEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCREC 215 (223)
Q Consensus 165 ~~~~~~C~ICle~-f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~ 215 (223)
...+..|-||+.. |.++.-..... |.-.||..|--+--.+.+ .|-+||..
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~Y-Cq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSY-CQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcccccccCcccch-hhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 3467899999753 44422221111 222345555443322222 28888764
Done!