Query 027422
Match_columns 223
No_of_seqs 285 out of 1839
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3.8E-18 1.3E-22 124.7 5.6 81 137-219 10-90 (91)
2 1x4j_A Ring finger protein 38; 99.7 6E-18 2E-22 119.0 2.2 71 147-220 4-74 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 2.3E-16 8E-21 104.0 3.9 52 166-217 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 9.3E-16 3.2E-20 105.8 5.2 55 165-220 11-65 (69)
5 2ep4_A Ring finger protein 24; 99.6 6.3E-16 2.1E-20 108.1 4.0 55 165-220 12-66 (74)
6 2ect_A Ring finger protein 126 99.6 1.2E-15 4.2E-20 107.6 3.5 55 165-220 12-66 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 3.9E-15 1.3E-19 106.4 2.8 52 167-218 14-76 (81)
8 3ng2_A RNF4, snurf, ring finge 99.5 7.3E-15 2.5E-19 101.5 3.1 54 165-219 7-64 (71)
9 2ecm_A Ring finger and CHY zin 99.5 1.3E-14 4.5E-19 95.4 3.8 50 167-217 4-54 (55)
10 2ecn_A Ring finger protein 141 99.5 8.2E-15 2.8E-19 101.3 2.5 54 165-223 12-65 (70)
11 1v87_A Deltex protein 2; ring- 99.5 2.5E-14 8.7E-19 107.9 4.9 53 167-220 24-96 (114)
12 2ea6_A Ring finger protein 4; 99.5 1.6E-14 5.5E-19 99.0 3.2 53 165-218 12-68 (69)
13 2xeu_A Ring finger protein 4; 99.5 2E-14 6.7E-19 97.1 3.0 52 167-219 2-57 (64)
14 3dpl_R Ring-box protein 1; ubi 99.4 1E-13 3.4E-18 104.3 4.5 50 167-217 36-100 (106)
15 2djb_A Polycomb group ring fin 99.4 9.5E-14 3.3E-18 96.6 3.4 53 165-220 12-64 (72)
16 1chc_A Equine herpes virus-1 r 99.4 8.8E-14 3E-18 95.4 3.1 49 167-218 4-52 (68)
17 2ct2_A Tripartite motif protei 99.4 2.1E-13 7E-18 97.8 4.3 54 165-219 12-69 (88)
18 2ecy_A TNF receptor-associated 99.4 3.3E-13 1.1E-17 92.2 4.5 51 165-219 12-63 (66)
19 2d8t_A Dactylidin, ring finger 99.4 1.5E-13 5.2E-18 95.3 2.7 49 166-218 13-61 (71)
20 4ayc_A E3 ubiquitin-protein li 99.4 5E-14 1.7E-18 110.2 -0.5 49 166-218 51-99 (138)
21 2yur_A Retinoblastoma-binding 99.3 3E-13 1E-17 94.7 3.0 52 165-219 12-65 (74)
22 2ysl_A Tripartite motif-contai 99.3 4.7E-13 1.6E-17 92.8 3.7 52 165-220 17-71 (73)
23 2d8s_A Cellular modulator of i 99.3 5.1E-13 1.8E-17 95.5 3.6 53 166-220 13-72 (80)
24 2csy_A Zinc finger protein 183 99.3 4.3E-13 1.5E-17 95.2 2.7 49 165-217 12-60 (81)
25 3lrq_A E3 ubiquitin-protein li 99.3 3.6E-13 1.2E-17 99.8 1.6 52 165-219 19-71 (100)
26 1t1h_A Gspef-atpub14, armadill 99.3 9.9E-13 3.4E-17 92.5 3.8 51 165-219 5-56 (78)
27 1g25_A CDK-activating kinase a 99.3 1.3E-12 4.5E-17 88.9 4.3 52 167-219 2-56 (65)
28 4a0k_B E3 ubiquitin-protein li 99.3 2.7E-13 9.3E-18 103.6 0.2 51 167-217 47-111 (117)
29 4ap4_A E3 ubiquitin ligase RNF 99.3 1E-12 3.4E-17 100.6 3.3 53 166-219 5-61 (133)
30 2y43_A E3 ubiquitin-protein li 99.3 8.8E-13 3E-17 97.1 2.8 51 165-218 19-69 (99)
31 2ecw_A Tripartite motif-contai 99.3 2E-12 6.7E-17 91.7 4.1 51 165-219 16-72 (85)
32 2egp_A Tripartite motif-contai 99.3 7.6E-13 2.6E-17 93.1 1.9 50 165-218 9-65 (79)
33 2ecv_A Tripartite motif-contai 99.3 2.6E-12 8.8E-17 91.1 4.0 51 165-219 16-72 (85)
34 3fl2_A E3 ubiquitin-protein li 99.2 2.9E-12 9.8E-17 98.1 3.4 50 165-218 49-99 (124)
35 3ztg_A E3 ubiquitin-protein li 99.2 3.9E-12 1.3E-16 92.2 3.8 50 165-217 10-61 (92)
36 2ysj_A Tripartite motif-contai 99.2 5.4E-12 1.9E-16 85.2 3.9 44 165-212 17-63 (63)
37 1e4u_A Transcriptional repress 99.2 9.7E-12 3.3E-16 88.4 4.9 57 165-222 8-66 (78)
38 2ckl_A Polycomb group ring fin 99.2 5.4E-12 1.8E-16 94.3 3.6 52 165-219 12-63 (108)
39 2ecj_A Tripartite motif-contai 99.2 7.1E-12 2.4E-16 82.9 3.5 44 165-212 12-58 (58)
40 2ct0_A Non-SMC element 1 homol 99.2 1.2E-11 4.2E-16 87.0 4.8 52 167-221 14-67 (74)
41 1jm7_A BRCA1, breast cancer ty 99.2 8.3E-12 2.8E-16 93.4 3.9 51 165-219 18-71 (112)
42 4ap4_A E3 ubiquitin ligase RNF 99.2 6.6E-12 2.3E-16 96.0 2.9 53 166-219 70-126 (133)
43 2ckl_B Ubiquitin ligase protei 99.2 1.5E-11 5.1E-16 98.6 5.0 74 142-218 23-102 (165)
44 1rmd_A RAG1; V(D)J recombinati 99.2 5.5E-12 1.9E-16 95.4 2.0 51 165-219 20-71 (116)
45 1z6u_A NP95-like ring finger p 99.1 1.5E-11 5E-16 97.7 2.8 51 165-219 75-126 (150)
46 3hct_A TNF receptor-associated 99.1 1.4E-11 4.7E-16 93.7 1.9 51 165-219 15-66 (118)
47 2kre_A Ubiquitin conjugation f 99.1 2.3E-11 7.7E-16 90.4 2.9 51 165-219 26-76 (100)
48 2vje_A E3 ubiquitin-protein li 99.1 1.6E-11 5.3E-16 83.9 1.5 51 167-219 7-58 (64)
49 2kr4_A Ubiquitin conjugation f 99.1 2.6E-11 8.9E-16 87.3 2.5 51 165-219 11-61 (85)
50 3l11_A E3 ubiquitin-protein li 99.1 9E-12 3.1E-16 94.0 -0.1 48 166-217 13-61 (115)
51 1wgm_A Ubiquitin conjugation f 99.1 5.3E-11 1.8E-15 88.0 3.6 50 166-219 20-70 (98)
52 3knv_A TNF receptor-associated 99.0 5E-11 1.7E-15 93.7 2.3 49 165-217 28-77 (141)
53 1bor_A Transcription factor PM 99.0 5.3E-11 1.8E-15 78.9 1.8 48 166-220 4-51 (56)
54 2vje_B MDM4 protein; proto-onc 99.0 4.6E-11 1.6E-15 81.2 1.4 51 167-219 6-57 (63)
55 4ic3_A E3 ubiquitin-protein li 99.0 3E-11 1E-15 84.6 0.1 49 165-221 21-70 (74)
56 1jm7_B BARD1, BRCA1-associated 99.0 1E-10 3.5E-15 88.6 1.9 49 165-218 19-67 (117)
57 2ecg_A Baculoviral IAP repeat- 99.0 2.1E-10 7.3E-15 80.3 2.9 51 165-223 22-73 (75)
58 2y1n_A E3 ubiquitin-protein li 98.9 3.4E-10 1.2E-14 102.4 3.7 48 168-219 332-380 (389)
59 3hcs_A TNF receptor-associated 98.9 4.5E-10 1.5E-14 90.2 1.9 51 165-219 15-66 (170)
60 3k1l_B Fancl; UBC, ring, RWD, 98.9 7.1E-10 2.4E-14 98.4 3.3 54 166-219 306-374 (381)
61 2yu4_A E3 SUMO-protein ligase 98.9 5.9E-10 2E-14 81.5 1.7 47 166-215 5-59 (94)
62 2c2l_A CHIP, carboxy terminus 98.8 7E-10 2.4E-14 94.7 2.3 49 166-218 206-255 (281)
63 2ea5_A Cell growth regulator w 98.8 1.4E-09 4.8E-14 75.0 2.5 48 166-221 13-61 (68)
64 1wim_A KIAA0161 protein; ring 98.8 2E-09 6.7E-14 78.4 3.0 48 167-215 4-61 (94)
65 2yho_A E3 ubiquitin-protein li 98.7 1.2E-09 4.3E-14 77.4 -0.3 47 165-219 15-62 (79)
66 2f42_A STIP1 homology and U-bo 98.7 4.7E-09 1.6E-13 85.6 2.8 50 166-219 104-154 (179)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1.1E-08 3.8E-13 68.9 3.9 50 166-218 4-59 (60)
68 3htk_C E3 SUMO-protein ligase 98.5 1.7E-08 6E-13 86.6 2.0 49 167-218 180-232 (267)
69 3t6p_A Baculoviral IAP repeat- 98.5 1.1E-08 3.6E-13 91.5 -0.2 49 164-220 291-340 (345)
70 2bay_A PRE-mRNA splicing facto 98.5 3.3E-08 1.1E-12 66.7 1.4 49 168-219 3-51 (61)
71 3vk6_A E3 ubiquitin-protein li 98.2 7.7E-07 2.6E-11 65.4 3.6 46 170-218 3-49 (101)
72 3nw0_A Non-structural maintena 98.1 2.7E-06 9.2E-11 72.2 5.2 52 167-221 179-232 (238)
73 2ko5_A Ring finger protein Z; 96.5 0.0011 3.9E-08 47.9 2.1 49 165-219 25-74 (99)
74 2lri_C Autoimmune regulator; Z 95.5 0.011 3.9E-07 39.9 3.4 48 166-217 10-61 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0081 2.8E-07 43.3 2.8 36 167-203 2-38 (101)
76 1we9_A PHD finger family prote 94.1 0.014 4.6E-07 38.9 1.0 51 166-216 4-59 (64)
77 2l5u_A Chromodomain-helicase-D 93.8 0.035 1.2E-06 36.7 2.5 47 165-215 8-58 (61)
78 1wil_A KIAA1045 protein; ring 92.5 0.11 3.8E-06 36.7 3.6 35 166-202 13-47 (89)
79 2k16_A Transcription initiatio 92.5 0.041 1.4E-06 37.7 1.3 52 167-219 17-72 (75)
80 2puy_A PHD finger protein 21A; 91.8 0.022 7.4E-07 37.5 -0.8 51 167-221 4-58 (60)
81 1mm2_A MI2-beta; PHD, zinc fin 91.4 0.041 1.4E-06 36.4 0.3 48 166-217 7-58 (61)
82 2vpb_A Hpygo1, pygopus homolog 90.9 0.16 5.6E-06 34.0 2.9 35 166-200 6-41 (65)
83 2cs3_A Protein C14ORF4, MY039 90.2 0.34 1.2E-05 34.0 4.0 40 166-206 13-53 (93)
84 1fp0_A KAP-1 corepressor; PHD 90.1 0.1 3.4E-06 37.3 1.3 49 165-217 22-74 (88)
85 1f62_A Transcription factor WS 90.0 0.15 5.3E-06 32.0 2.1 44 170-214 2-49 (51)
86 2kgg_A Histone demethylase jar 89.6 0.11 3.9E-06 33.0 1.2 44 170-213 4-52 (52)
87 2yql_A PHD finger protein 21A; 89.4 0.041 1.4E-06 35.7 -1.1 45 166-214 7-55 (56)
88 1wep_A PHF8; structural genomi 89.2 0.27 9.2E-06 34.0 3.0 49 167-216 11-64 (79)
89 2ku3_A Bromodomain-containing 87.6 0.16 5.6E-06 34.6 1.0 51 165-215 13-66 (71)
90 1xwh_A Autoimmune regulator; P 87.3 0.098 3.3E-06 35.0 -0.3 47 166-216 6-56 (66)
91 2yt5_A Metal-response element- 87.2 0.087 3E-06 35.0 -0.6 53 165-217 3-63 (66)
92 1weu_A Inhibitor of growth fam 87.0 0.33 1.1E-05 34.8 2.3 47 167-218 35-88 (91)
93 1wee_A PHD finger family prote 86.7 0.1 3.5E-06 35.5 -0.5 51 167-218 15-69 (72)
94 2ri7_A Nucleosome-remodeling f 86.7 0.17 5.9E-06 39.9 0.8 49 166-215 6-59 (174)
95 2l43_A N-teminal domain from h 86.6 0.19 6.4E-06 35.7 0.9 52 166-217 23-77 (88)
96 3v43_A Histone acetyltransfera 86.5 0.2 6.9E-06 36.9 1.0 45 170-214 63-111 (112)
97 3m62_A Ubiquitin conjugation f 86.2 0.39 1.3E-05 47.8 3.1 48 167-218 890-938 (968)
98 1wem_A Death associated transc 86.0 0.24 8.1E-06 33.9 1.1 50 168-219 16-74 (76)
99 1z60_A TFIIH basal transcripti 85.8 0.61 2.1E-05 30.7 2.9 44 168-212 15-58 (59)
100 1wen_A Inhibitor of growth fam 85.5 0.5 1.7E-05 32.1 2.6 46 167-217 15-67 (71)
101 3o70_A PHD finger protein 13; 83.8 0.21 7.1E-06 33.7 -0.0 46 167-214 18-66 (68)
102 2xb1_A Pygopus homolog 2, B-ce 83.6 0.57 1.9E-05 34.2 2.3 50 168-217 3-63 (105)
103 1wew_A DNA-binding family prot 82.9 0.43 1.5E-05 32.9 1.3 51 167-219 15-76 (78)
104 3mpx_A FYVE, rhogef and PH dom 82.5 0.39 1.3E-05 42.9 1.3 51 167-217 374-431 (434)
105 3c6w_A P28ING5, inhibitor of g 82.3 0.36 1.2E-05 31.6 0.6 43 167-214 8-57 (59)
106 2lbm_A Transcriptional regulat 81.9 1.6 5.4E-05 33.7 4.3 46 166-215 61-117 (142)
107 3zyq_A Hepatocyte growth facto 81.8 0.24 8.1E-06 41.1 -0.4 52 167-218 163-222 (226)
108 2lv9_A Histone-lysine N-methyl 81.5 0.39 1.3E-05 34.6 0.7 44 169-214 29-75 (98)
109 2vnf_A ING 4, P29ING4, inhibit 80.6 0.42 1.4E-05 31.3 0.6 43 167-214 9-58 (60)
110 2e6r_A Jumonji/ARID domain-con 79.4 0.19 6.5E-06 36.0 -1.6 49 166-215 14-66 (92)
111 2ysm_A Myeloid/lymphoid or mix 79.3 0.53 1.8E-05 34.4 0.8 38 166-204 5-42 (111)
112 2g6q_A Inhibitor of growth pro 78.9 0.55 1.9E-05 31.0 0.7 43 167-214 10-59 (62)
113 1wev_A Riken cDNA 1110020M19; 78.2 0.25 8.4E-06 35.0 -1.3 53 166-218 14-75 (88)
114 3v43_A Histone acetyltransfera 77.6 3.4 0.00012 30.2 4.8 34 167-200 4-42 (112)
115 3i2d_A E3 SUMO-protein ligase 77.0 1.4 4.6E-05 39.4 2.9 49 167-218 248-300 (371)
116 1vfy_A Phosphatidylinositol-3- 75.9 1.7 5.8E-05 29.4 2.5 35 168-202 11-45 (73)
117 4fo9_A E3 SUMO-protein ligase 75.8 1.5 5.3E-05 38.9 2.9 48 168-218 215-266 (360)
118 4gne_A Histone-lysine N-methyl 75.6 1.6 5.6E-05 32.0 2.5 47 165-217 12-64 (107)
119 3shb_A E3 ubiquitin-protein li 75.5 0.49 1.7E-05 32.7 -0.4 45 170-215 28-77 (77)
120 3t7l_A Zinc finger FYVE domain 74.5 2 6.8E-05 30.3 2.7 50 167-216 19-74 (90)
121 3ql9_A Transcriptional regulat 74.3 4.2 0.00014 30.8 4.6 46 166-215 55-111 (129)
122 1joc_A EEA1, early endosomal a 74.0 1.9 6.6E-05 32.3 2.7 36 167-202 68-103 (125)
123 2e6s_A E3 ubiquitin-protein li 73.9 0.84 2.9E-05 31.5 0.5 45 169-214 27-76 (77)
124 1z2q_A LM5-1; membrane protein 73.6 1.9 6.7E-05 29.9 2.4 51 167-217 20-78 (84)
125 2rsd_A E3 SUMO-protein ligase 73.5 0.33 1.1E-05 32.5 -1.6 47 167-215 9-65 (68)
126 2yw8_A RUN and FYVE domain-con 72.5 2 6.7E-05 29.7 2.2 51 167-217 18-74 (82)
127 1y02_A CARP2, FYVE-ring finger 72.3 0.49 1.7E-05 35.6 -1.0 49 167-215 18-66 (120)
128 3kqi_A GRC5, PHD finger protei 71.2 1.4 4.9E-05 29.9 1.2 48 169-216 10-62 (75)
129 1dvp_A HRS, hepatocyte growth 71.0 1.8 6.1E-05 35.4 2.0 36 167-202 160-195 (220)
130 3asl_A E3 ubiquitin-protein li 70.9 0.98 3.3E-05 30.5 0.3 45 170-215 20-69 (70)
131 1x4u_A Zinc finger, FYVE domai 69.8 2.3 8E-05 29.4 2.1 36 167-202 13-48 (84)
132 1wfk_A Zinc finger, FYVE domai 69.7 2.5 8.6E-05 29.7 2.3 51 167-217 8-65 (88)
133 1zbd_B Rabphilin-3A; G protein 69.7 2.2 7.6E-05 32.5 2.1 35 167-201 54-89 (134)
134 2jmi_A Protein YNG1, ING1 homo 69.0 1.2 4.3E-05 31.6 0.5 44 166-214 24-75 (90)
135 3o7a_A PHD finger protein 13 v 68.6 0.93 3.2E-05 28.6 -0.2 42 172-214 7-51 (52)
136 2kwj_A Zinc finger protein DPF 68.1 3.2 0.00011 30.4 2.6 34 169-202 2-41 (114)
137 3ask_A E3 ubiquitin-protein li 66.6 1.5 5.2E-05 36.4 0.7 46 169-215 175-225 (226)
138 2kwj_A Zinc finger protein DPF 63.9 0.72 2.5E-05 34.0 -1.7 49 170-219 60-112 (114)
139 2ysm_A Myeloid/lymphoid or mix 63.4 1.6 5.4E-05 31.7 0.2 47 170-217 56-106 (111)
140 1x4i_A Inhibitor of growth pro 62.8 3.3 0.00011 27.8 1.6 45 167-216 5-56 (70)
141 1weo_A Cellulose synthase, cat 60.4 21 0.00071 25.3 5.5 51 167-217 15-69 (93)
142 2jne_A Hypothetical protein YF 56.3 2.8 9.5E-05 30.3 0.4 41 168-217 32-72 (101)
143 1zfo_A LAsp-1; LIM domain, zin 54.8 6.4 0.00022 21.9 1.7 27 169-198 4-30 (31)
144 2gmg_A Hypothetical protein PF 54.4 2.5 8.6E-05 30.9 -0.1 23 189-216 72-94 (105)
145 3mjh_B Early endosome antigen 53.8 1.7 5.7E-05 25.4 -0.9 18 167-184 4-21 (34)
146 2o35_A Hypothetical protein DU 47.3 7.5 0.00025 28.2 1.4 11 194-204 43-53 (105)
147 2zet_C Melanophilin; complex, 47.0 11 0.00037 29.3 2.5 47 167-214 67-116 (153)
148 3fyb_A Protein of unknown func 46.7 7.7 0.00026 28.0 1.4 11 194-204 42-52 (104)
149 3a1b_A DNA (cytosine-5)-methyl 46.3 16 0.00054 28.6 3.3 34 167-204 78-113 (159)
150 3kv5_D JMJC domain-containing 45.5 5.1 0.00017 36.9 0.4 46 169-215 38-88 (488)
151 2d8v_A Zinc finger FYVE domain 44.9 10 0.00036 25.3 1.8 32 166-202 6-38 (67)
152 2cu8_A Cysteine-rich protein 2 43.7 11 0.00039 24.7 1.9 39 168-217 9-47 (76)
153 2jrp_A Putative cytoplasmic pr 43.2 8 0.00028 26.9 1.1 13 169-181 3-15 (81)
154 2ct7_A Ring finger protein 31; 40.2 2.5 8.6E-05 29.4 -2.0 43 170-212 27-73 (86)
155 2jmo_A Parkin; IBR, E3 ligase, 40.1 4.7 0.00016 27.6 -0.6 40 168-209 25-73 (80)
156 2pv0_B DNA (cytosine-5)-methyl 40.1 19 0.00064 32.2 3.2 44 167-214 92-147 (386)
157 2xjy_A Rhombotin-2; oncoprotei 39.4 19 0.00065 26.1 2.8 48 169-218 30-78 (131)
158 3pwf_A Rubrerythrin; non heme 39.2 10 0.00035 29.8 1.3 9 207-215 154-162 (170)
159 1iml_A CRIP, cysteine rich int 39.0 16 0.00053 24.0 2.0 43 168-215 27-70 (76)
160 1wd2_A Ariadne-1 protein homol 38.4 6.3 0.00021 25.6 -0.1 39 167-205 5-47 (60)
161 1m3v_A FLIN4, fusion of the LI 37.7 22 0.00075 25.7 2.8 48 169-218 33-81 (122)
162 2co8_A NEDD9 interacting prote 37.1 24 0.00081 23.6 2.7 29 167-198 14-42 (82)
163 2jvx_A NF-kappa-B essential mo 36.7 11 0.00037 20.9 0.7 12 207-218 4-15 (28)
164 4bbq_A Lysine-specific demethy 34.9 4 0.00014 29.7 -1.7 46 170-215 61-114 (117)
165 2xqn_T Testin, TESS; metal-bin 34.7 35 0.0012 24.5 3.5 45 169-218 31-75 (126)
166 1rut_X Flinc4, fusion protein 34.0 21 0.0007 28.0 2.3 47 169-217 33-80 (188)
167 1a7i_A QCRP2 (LIM1); LIM domai 33.8 8.1 0.00028 25.8 -0.2 12 170-181 9-20 (81)
168 3ttc_A HYPF, transcriptional r 33.3 17 0.00057 34.8 1.9 50 167-216 16-99 (657)
169 4g9i_A Hydrogenase maturation 33.2 17 0.00057 35.4 1.9 50 167-216 105-188 (772)
170 1lko_A Rubrerythrin all-iron(I 33.0 11 0.00036 30.1 0.4 8 208-215 173-180 (191)
171 3ldt_A Outer membrane protein, 32.0 10 0.00035 29.5 0.1 13 55-67 4-16 (169)
172 3ldt_A Outer membrane protein, 31.4 9.6 0.00033 29.7 -0.1 18 53-70 6-23 (169)
173 1tpx_A Prion protein, major pr 31.0 10 0.00036 28.3 0.0 10 59-68 8-17 (121)
174 3heq_A Major prion protein; ce 30.8 11 0.00037 28.5 0.1 10 55-64 29-38 (142)
175 2dj7_A Actin-binding LIM prote 30.7 23 0.0008 23.6 1.8 40 167-217 14-53 (80)
176 3vth_A Hydrogenase maturation 30.7 18 0.00062 35.1 1.7 50 167-216 110-193 (761)
177 2a20_A Regulating synaptic mem 30.6 4.2 0.00014 26.7 -1.9 48 166-214 7-59 (62)
178 1wyh_A SLIM 2, skeletal muscle 30.3 41 0.0014 21.4 3.0 12 169-180 6-17 (72)
179 3f6q_B LIM and senescent cell 30.2 24 0.0008 22.4 1.7 41 168-218 11-51 (72)
180 2l4z_A DNA endonuclease RBBP8, 30.2 29 0.00099 25.4 2.4 39 168-217 61-99 (123)
181 2d8y_A Eplin protein; LIM doma 30.0 22 0.00077 24.1 1.7 11 191-201 62-72 (91)
182 1x62_A C-terminal LIM domain p 29.7 26 0.0009 23.1 2.0 39 167-217 14-52 (79)
183 2kpi_A Uncharacterized protein 29.7 21 0.00071 22.8 1.3 29 166-194 8-38 (56)
184 2cor_A Pinch protein; LIM doma 29.2 31 0.0011 22.8 2.2 38 168-217 15-52 (79)
185 1wig_A KIAA1808 protein; LIM d 28.7 43 0.0015 21.7 2.9 11 169-179 32-42 (73)
186 1g47_A Pinch protein; LIM doma 28.7 31 0.001 22.4 2.1 41 167-217 10-50 (77)
187 2d8z_A Four and A half LIM dom 28.4 33 0.0011 21.8 2.2 10 169-178 32-41 (70)
188 1nyp_A Pinch protein; LIM doma 28.0 32 0.0011 21.6 2.1 37 169-217 6-42 (66)
189 1yuz_A Nigerythrin; rubrythrin 27.8 20 0.0007 28.8 1.3 9 207-215 187-195 (202)
190 2fiy_A Protein FDHE homolog; F 27.6 5.5 0.00019 34.5 -2.3 49 166-215 180-231 (309)
191 2pk7_A Uncharacterized protein 27.4 18 0.00063 24.1 0.8 9 208-216 28-36 (69)
192 3vhs_A ATPase wrnip1; zinc fin 27.3 17 0.00059 19.6 0.5 8 209-216 9-16 (29)
193 1x4l_A Skeletal muscle LIM-pro 27.2 34 0.0011 21.9 2.1 12 169-180 6-17 (72)
194 2cup_A Skeletal muscle LIM-pro 26.9 41 0.0014 23.0 2.6 45 169-218 34-78 (101)
195 3lqh_A Histone-lysine N-methyl 26.4 22 0.00074 28.3 1.2 33 184-216 21-64 (183)
196 1x64_A Alpha-actinin-2 associa 26.2 52 0.0018 22.1 3.0 40 167-218 24-63 (89)
197 2lq6_A Bromodomain-containing 26.0 45 0.0015 23.1 2.6 34 168-202 17-51 (87)
198 1x4k_A Skeletal muscle LIM-pro 26.0 45 0.0015 21.2 2.6 11 170-180 7-17 (72)
199 1x63_A Skeletal muscle LIM-pro 24.2 66 0.0022 21.0 3.2 39 169-217 16-54 (82)
200 2das_A Zinc finger MYM-type pr 22.3 72 0.0025 20.8 2.8 37 167-203 19-56 (62)
201 2jny_A Uncharacterized BCR; st 21.9 16 0.00055 24.3 -0.4 14 166-179 8-21 (67)
202 2jtn_A LIM domain-binding prot 21.6 77 0.0026 24.3 3.6 44 169-218 88-131 (182)
203 1x68_A FHL5 protein; four-and- 21.1 57 0.0019 21.1 2.3 12 169-180 6-17 (76)
204 2rgt_A Fusion of LIM/homeobox 20.9 1E+02 0.0035 23.3 4.1 43 169-217 34-76 (169)
205 1l8d_A DNA double-strand break 20.9 23 0.00079 25.2 0.3 11 168-178 47-57 (112)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=124.70 Aligned_cols=81 Identities=35% Similarity=0.760 Sum_probs=69.2
Q ss_pred cccCCCCCCHHHHhcCCccccchhhhhhcccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccc
Q 027422 137 DVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 216 (223)
Q Consensus 137 ~~~~~~g~s~~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v 216 (223)
.....++++++.++.||...+.... ....++..|+||+++|..++.++.+| |+|.||..||.+|++.+.+||+||.++
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~-~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDH-GAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTC-SSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCcCCCCCCHHHHHhCCCeeecccc-cccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 3456789999999999998876543 22346788999999999999899998 999999999999999999999999998
Q ss_pred ccC
Q 027422 217 CKD 219 (223)
Q Consensus 217 ~~~ 219 (223)
...
T Consensus 88 ~~~ 90 (91)
T 2l0b_A 88 PPP 90 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6e-18 Score=118.97 Aligned_cols=71 Identities=34% Similarity=0.785 Sum_probs=59.7
Q ss_pred HHHhcCCccccchhhhhhcccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 147 DMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 147 ~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
+.++++|..++.... ...++..|+||++++..++.++.+| |+|.||..||.+|++.+.+||+||+++...+
T Consensus 4 ~~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred hhHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 456678887775433 2346688999999999998889998 9999999999999999999999999998754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.61 E-value=2.3e-16 Score=104.00 Aligned_cols=52 Identities=50% Similarity=1.210 Sum_probs=47.6
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
+++.+|+||++++..++....+|+|+|.||..||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4678999999999998888888789999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=9.3e-16 Score=105.78 Aligned_cols=55 Identities=47% Similarity=1.021 Sum_probs=49.3
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
...+..|+||++.+..+..+..+| |+|.||..||.+|+..+.+||+||.++....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 346688999999999888888898 9999999999999999999999999987654
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.3e-16 Score=108.08 Aligned_cols=55 Identities=36% Similarity=0.792 Sum_probs=49.5
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
...+..|+||++++..+..+..+| |+|.||..||.+|++.+.+||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 346789999999999999888898 9999999999999999999999999987543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=1.2e-15 Score=107.64 Aligned_cols=55 Identities=38% Similarity=1.030 Sum_probs=49.4
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
...+..|+||++.|..+..+..+| |+|.||..||.+|++.+.+||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 346789999999999988888898 9999999999999999999999999987543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.9e-15 Score=106.44 Aligned_cols=52 Identities=27% Similarity=0.691 Sum_probs=42.6
Q ss_pred cCcccccccccccC-----------CCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEE-----------GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~-----------~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
++..|+||+++|.+ ++.++.+|+|+|.||..||++|++.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45667887777754 45566676799999999999999999999999998764
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=7.3e-15 Score=101.47 Aligned_cols=54 Identities=28% Similarity=0.724 Sum_probs=45.9
Q ss_pred cccCcccccccccccCC----CceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~----~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
.+++..|+||++++.++ .....++ |||.||..||.+|++.+.+||+||+++...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 34678999999998774 3445665 999999999999999999999999998754
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.49 E-value=1.3e-14 Score=95.37 Aligned_cols=50 Identities=36% Similarity=0.839 Sum_probs=43.3
Q ss_pred cCcccccccccccCCC-ceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGD-SARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~-~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
++..|+||++++.++. ....+| |+|.||..||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 5678999999997644 456666 9999999999999999999999999875
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.2e-15 Score=101.27 Aligned_cols=54 Identities=35% Similarity=0.891 Sum_probs=47.1
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCCCCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTDTW 223 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~~~~ 223 (223)
..++..|+||++.+.+ ..+| |+|.||..||.+|+..+..||+||+++...++.|
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 3467899999999887 4566 9999999999999999999999999999877654
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.47 E-value=2.5e-14 Score=107.87 Aligned_cols=53 Identities=30% Similarity=0.620 Sum_probs=42.6
Q ss_pred cCcccccccccccCCC---------------ceeecCCCCccccHHHHHHHh-----hcCCCCcccccccccCC
Q 027422 167 NEIGCSICLEKFEEGD---------------SARKLPSCGHCFHSECVDKWL-----TRNGSCPVCRECVCKDT 220 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~---------------~~~~Lp~CgH~FH~~CI~~WL-----~~~~sCPvCR~~v~~~~ 220 (223)
.+..|+||+++|..+. .++.+| |+|.||..||.+|+ ..+.+||+||..+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 4568999999997654 233565 99999999999999 45678999999886543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-14 Score=98.99 Aligned_cols=53 Identities=28% Similarity=0.735 Sum_probs=44.7
Q ss_pred cccCcccccccccccCC----CceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 165 LDNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~----~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
..++..|+||++.+.++ ..+..++ |+|.||..||.+|+..+..||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34678999999999875 2335566 99999999999999999999999999864
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.46 E-value=2e-14 Score=97.10 Aligned_cols=52 Identities=29% Similarity=0.747 Sum_probs=44.4
Q ss_pred cCcccccccccccCC----CceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 167 NEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 167 ~~~~C~ICle~f~~~----~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
++..|+||++.+.++ .....++ |||.||..|+.+|++.+.+||+||+++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 467899999999864 3345565 999999999999999999999999998764
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.42 E-value=1e-13 Score=104.32 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=42.5
Q ss_pred cCcccccccccccCCC---------------ceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGD---------------SARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~---------------~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
++..|+||+++|..+. .+..+| |+|.||..||.+||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5678999999998652 245565 9999999999999999999999999854
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=9.5e-14 Score=96.60 Aligned_cols=53 Identities=26% Similarity=0.542 Sum_probs=44.5
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
.+++..|+||++.+.++.. .++ |+|.||..||.+|+..+..||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~p~~--~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATT--ITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEE--CSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCcCE--ECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 4467899999999987432 234 9999999999999999999999999987654
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.40 E-value=8.8e-14 Score=95.37 Aligned_cols=49 Identities=35% Similarity=0.809 Sum_probs=42.5
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
.+..|+||++.+.++ ...+| |+|.||..|+.+|+..+.+||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 567899999998764 35566 99999999999999999999999998864
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.1e-13 Score=97.83 Aligned_cols=54 Identities=31% Similarity=0.755 Sum_probs=45.5
Q ss_pred cccCcccccccccccCCCc-eeecCCCCccccHHHHHHHhhcC---CCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDS-ARKLPSCGHCFHSECVDKWLTRN---GSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~-~~~Lp~CgH~FH~~CI~~WL~~~---~sCPvCR~~v~~~ 219 (223)
..++..|+||++.|.+.+. ...+| |||.||..|+.+|++.+ ..||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4467899999999988654 56676 99999999999999876 7899999987654
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.3e-13 Score=92.19 Aligned_cols=51 Identities=25% Similarity=0.678 Sum_probs=43.4
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhh-cCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++..+ +|||.||..||.+|+. .+..||+||+++..+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQT----ECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCCCC----SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCeeEC----CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34678999999999887654 4999999999999994 567899999998765
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=95.32 Aligned_cols=49 Identities=29% Similarity=0.545 Sum_probs=42.6
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
.++..|+||++.+.++ ..+| |+|.||..||.+|+..+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4568899999999775 3455 99999999999999999999999999864
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.36 E-value=5e-14 Score=110.18 Aligned_cols=49 Identities=41% Similarity=0.962 Sum_probs=42.8
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
+++..|+||++.+.++. .+| |||.||..||.+|+..+.+||+||.++..
T Consensus 51 ~~~~~C~iC~~~~~~~~---~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAV---TLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSSEE---EET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCCce---ECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45678999999998754 455 99999999999999999999999999864
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=3e-13 Score=94.72 Aligned_cols=52 Identities=25% Similarity=0.710 Sum_probs=43.0
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC--CCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++.. +|.|+|.||..||.+|+..+ ..||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEE---CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCCcCCChHHhCCeE---cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 4467899999999998655 44499999999999999866 6899999986544
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.7e-13 Score=92.85 Aligned_cols=52 Identities=31% Similarity=0.722 Sum_probs=43.0
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhh---cCCCCcccccccccCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVCRECVCKDT 220 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~---~~~sCPvCR~~v~~~~ 220 (223)
..++..|+||++.+.++. .+| |||.||..||.+|++ .+..||+||+++..++
T Consensus 17 ~~~~~~C~IC~~~~~~~~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPV---TID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSEE---ECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCeE---EcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 456789999999998744 345 999999999999997 4568999999987653
No 23
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.1e-13 Score=95.50 Aligned_cols=53 Identities=23% Similarity=0.626 Sum_probs=44.3
Q ss_pred ccCcccccccccccCCCceeecCCCC-----ccccHHHHHHHhhcC--CCCcccccccccCC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCG-----HCFHSECVDKWLTRN--GSCPVCRECVCKDT 220 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~Cg-----H~FH~~CI~~WL~~~--~sCPvCR~~v~~~~ 220 (223)
.++..|.||++++.+++.+ .+| |+ |.||..||++|+..+ .+||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3567899999999877665 577 86 999999999999876 48999999987543
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.3e-13 Score=95.23 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=42.5
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
...+..|+||++.+.++. .+| |+|.||..||.+|+..+..||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPV---VTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEE---ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCee---Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345689999999998754 455 9999999999999999999999999985
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=3.6e-13 Score=99.77 Aligned_cols=52 Identities=27% Similarity=0.681 Sum_probs=43.5
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC-CCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~-~sCPvCR~~v~~~ 219 (223)
..++..|+||++.|.++.. .+ +|||.||..||.+|+..+ ..||+||.++..+
T Consensus 19 l~~~~~C~IC~~~~~~p~~--~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARL--CP-HCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEE--CT-TTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCccCCccccCccc--cC-CCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 4577899999999987443 14 499999999999999988 6999999998643
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.31 E-value=9.9e-13 Score=92.53 Aligned_cols=51 Identities=22% Similarity=0.538 Sum_probs=43.6
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhc-CCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++..+ | |||.||..||.+|+.. +.+||+||+++...
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~---~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIV---S-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEE---T-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccCCEEc---C-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 34678999999999886544 4 9999999999999987 78899999998654
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1.3e-12 Score=88.89 Aligned_cols=52 Identities=31% Similarity=0.698 Sum_probs=42.0
Q ss_pred cCcccccccc-cccCCCcee-ecCCCCccccHHHHHHHhhc-CCCCcccccccccC
Q 027422 167 NEIGCSICLE-KFEEGDSAR-KLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 219 (223)
Q Consensus 167 ~~~~C~ICle-~f~~~~~~~-~Lp~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~~ 219 (223)
++..|+||++ .+.++.... .++ |||.||..||.+|+.+ +..||+||+++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 4678999999 788776533 355 9999999999999764 46799999998754
No 28
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.29 E-value=2.7e-13 Score=103.64 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=1.1
Q ss_pred cCcccccccccccCCCc--------------eeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDS--------------ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~--------------~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
++..|+||+++|.++.. ...+++|+|.||..||++||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 56789999999976321 2222359999999999999999999999999864
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=1e-12 Score=100.63 Aligned_cols=53 Identities=28% Similarity=0.752 Sum_probs=45.2
Q ss_pred ccCcccccccccccCC----CceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~----~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
.++..|+||++.+.++ .....++ |||.||..||.+|++.+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3578999999999875 3345665 999999999999999999999999998754
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=8.8e-13 Score=97.10 Aligned_cols=51 Identities=33% Similarity=0.816 Sum_probs=43.1
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
..++..|+||++.+.++. .+++|||.||..||.+|+..+..||+||.++..
T Consensus 19 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAM---IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcC---EECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 346789999999998743 332499999999999999999999999998864
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=2e-12 Score=91.73 Aligned_cols=51 Identities=33% Similarity=0.718 Sum_probs=43.4
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhc------CCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR------NGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~------~~sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++. .+| |+|.||..|+.+|+.. ...||+||.++..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 346789999999998865 455 9999999999999987 67899999998754
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=7.6e-13 Score=93.06 Aligned_cols=50 Identities=36% Similarity=0.725 Sum_probs=42.8
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhc-------CCCCccccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-------NGSCPVCRECVCK 218 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-------~~sCPvCR~~v~~ 218 (223)
..++..|+||++.+.++.. +| |||.||..||.+|+.. +..||+||.++..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~---l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLS---LD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCC---CS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeE---CC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4567899999999988654 45 9999999999999987 6789999999864
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.6e-12 Score=91.12 Aligned_cols=51 Identities=37% Similarity=0.808 Sum_probs=43.3
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhc------CCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR------NGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~------~~sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++.. +| |+|.||..|+.+|+.. +..||+||..+..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLS---LD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBC---CS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCCcee---CC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4467899999999987544 45 9999999999999987 78899999998754
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.24 E-value=2.9e-12 Score=98.12 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=42.4
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC-CCccccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCK 218 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~-sCPvCR~~v~~ 218 (223)
..++..|+||++.+.++.. +| |||.||..||.+|+..+. .||+||.++..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPIT---TV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEE---ee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3467899999999997544 45 999999999999998554 89999999876
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.23 E-value=3.9e-12 Score=92.18 Aligned_cols=50 Identities=26% Similarity=0.719 Sum_probs=41.7
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC--CCCcccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~ 217 (223)
..++..|+||++.|.++..+ |.|||.||..||.+|+..+ ..||+||.++.
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~---~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVI---PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSCEEC---TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCceEC---CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45678999999999986544 3499999999999999754 58999999974
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.4e-12 Score=85.20 Aligned_cols=44 Identities=32% Similarity=0.788 Sum_probs=37.2
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhh---cCCCCccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVC 212 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~---~~~sCPvC 212 (223)
..++..|+||++.+.++.. +| |||.||..||.+|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVT---ID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEE---CT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEE---eC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999999987544 45 999999999999998 45689998
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.22 E-value=9.7e-12 Score=88.37 Aligned_cols=57 Identities=28% Similarity=0.591 Sum_probs=43.4
Q ss_pred cccCcccccccccccCCC-ceeecCCCCccccHHHHHHHhh-cCCCCcccccccccCCCC
Q 027422 165 LDNEIGCSICLEKFEEGD-SARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKDTDT 222 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~-~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~~~~ 222 (223)
.+++..||||++.+...+ ....++ |||.||..|+.+++. ....||.||+++......
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 456789999999886432 222243 999999999999985 457899999999866543
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.21 E-value=5.4e-12 Score=94.35 Aligned_cols=52 Identities=27% Similarity=0.674 Sum_probs=44.1
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++.. .+| |||.||..||.+|+..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~--~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATT--IIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEE--ETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCE--eCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4578899999999987432 235 999999999999999999999999998754
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7.1e-12 Score=82.88 Aligned_cols=44 Identities=43% Similarity=1.040 Sum_probs=36.7
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHh---hcCCCCccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL---TRNGSCPVC 212 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL---~~~~sCPvC 212 (223)
..++..|+||++.+.++.. +| |+|.||..||.+|+ ..+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVI---IE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCC---CS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEe---CC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3467899999999988644 45 99999999999995 456789998
No 40
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=87.03 Aligned_cols=52 Identities=29% Similarity=0.624 Sum_probs=43.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC--CCCcccccccccCCC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVCKDTD 221 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~~~~~ 221 (223)
....|+||++.+..++. .+.|+|.||..||.+||+.+ .+||+||+++....+
T Consensus 14 ~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 45789999999986542 33699999999999999987 889999999876544
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=8.3e-12 Score=93.36 Aligned_cols=51 Identities=33% Similarity=0.735 Sum_probs=42.6
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC---CCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG---SCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~---sCPvCR~~v~~~ 219 (223)
..+...|+||++.+.++.. +| |||.||..||.+|+..+. .||+||.++...
T Consensus 18 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred ccCCCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 3456799999999987655 44 999999999999998764 899999988754
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=6.6e-12 Score=96.00 Aligned_cols=53 Identities=28% Similarity=0.752 Sum_probs=44.6
Q ss_pred ccCcccccccccccCC----CceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~----~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
+++..|+||++.+.++ .....++ |||.||..||++|++.+.+||+||.++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4578899999998864 2234555 999999999999999999999999998764
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.18 E-value=1.5e-11 Score=98.58 Aligned_cols=74 Identities=28% Similarity=0.519 Sum_probs=50.7
Q ss_pred CCCCHHHHhcCCccccchhh-----hhhcccCcccccccccccCCCceeecCCCCccccHHHHHHHhhc-CCCCcccccc
Q 027422 142 KGLSEDMIQKLPECALHSEE-----LIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCREC 215 (223)
Q Consensus 142 ~g~s~~~i~~lp~~~~~~~~-----~~~~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-~~sCPvCR~~ 215 (223)
.+++...+.+.|........ .....++..|+||++.+.++ +..+| |||.||..||.+|+.. +..||+||.+
T Consensus 23 ~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 99 (165)
T 2ckl_B 23 WELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKK 99 (165)
T ss_dssp CCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCB
T ss_pred ccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCc
Confidence 44555555555543332211 11233567999999999874 22345 9999999999999997 7889999999
Q ss_pred ccc
Q 027422 216 VCK 218 (223)
Q Consensus 216 v~~ 218 (223)
+..
T Consensus 100 ~~~ 102 (165)
T 2ckl_B 100 LVS 102 (165)
T ss_dssp CCS
T ss_pred CCC
Confidence 853
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.17 E-value=5.5e-12 Score=95.36 Aligned_cols=51 Identities=25% Similarity=0.555 Sum_probs=43.1
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhc-CCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++.. +| |||.||..||.+|+.. +..||+||.++...
T Consensus 20 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVE---TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred ccCCCCCCCCCcHhcCcEE---cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 3457899999999987544 45 9999999999999987 77899999998753
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=97.72 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=43.4
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC-CCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~-sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++.. +| |||.||..||.+|+.... .||+||.++...
T Consensus 75 l~~~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVT---TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEE---cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3456899999999988654 45 999999999999998765 899999998765
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.12 E-value=1.4e-11 Score=93.65 Aligned_cols=51 Identities=35% Similarity=0.788 Sum_probs=43.1
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC-CCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~-sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++. .+| |||.||..||.+|+..+. .||+||.++...
T Consensus 15 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREAV---QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCeE---ECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 456789999999998763 355 999999999999998765 999999998753
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.11 E-value=2.3e-11 Score=90.38 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=45.1
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
..++..||||++.|.+|..+ +|||+|+..||.+|+..+.+||+||.++...
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRL----PSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEE----TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccCCeEC----CCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 34678999999999997766 5999999999999999999999999998753
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.10 E-value=1.6e-11 Score=83.86 Aligned_cols=51 Identities=29% Similarity=0.464 Sum_probs=41.4
Q ss_pred cCcccccccccccCCCceeecCCCCcc-ccHHHHHHHhhcCCCCcccccccccC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
++..|+||++.+.+.. +..+| |||. ||..|+.+|.+.+..||+||+++...
T Consensus 7 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 7 AIEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp GGSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CcCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 5678999999876632 11247 9998 89999999999999999999998643
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.10 E-value=2.6e-11 Score=87.31 Aligned_cols=51 Identities=10% Similarity=0.125 Sum_probs=44.6
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
..++..||||++.|.++..+ .|||+|+..||.+|+..+.+||+||.++...
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRL----PSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCCeEC----CCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 34678999999999997665 5999999999999999999999999988643
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.09 E-value=9e-12 Score=94.05 Aligned_cols=48 Identities=33% Similarity=0.745 Sum_probs=41.0
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhc-CCCCcccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVC 217 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~ 217 (223)
.++..|+||++.+.++.. +| |||.||..||.+|+.. +..||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPVT---LP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCEE---CT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCceeE---cC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 356899999999987554 45 9999999999999976 678999999875
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.08 E-value=5.3e-11 Score=88.02 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=44.4
Q ss_pred ccCcccccccccccCCCceeecCCCC-ccccHHHHHHHhhcCCCCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCG-HCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~Cg-H~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
.++..||||++.|.++..+ .|| |+|+..||.+|+..+.+||+||+++...
T Consensus 20 p~~~~CpI~~~~m~dPV~~----~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL----PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCCeEC----CCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4678999999999997765 599 9999999999999999999999998754
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.04 E-value=5e-11 Score=93.73 Aligned_cols=49 Identities=24% Similarity=0.505 Sum_probs=41.8
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC-CCcccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~-sCPvCR~~v~ 217 (223)
.+++..|+||++.+.++.. ++ |||.||..||.+|+.... .||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~pv~---~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQ---AQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCcEE---CC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4577899999999998744 44 999999999999998665 8999999764
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=5.3e-11 Score=78.90 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=40.1
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccCC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
.++..|+||++.+.++. .+| |+|.||..|+.+| ...||+||+++....
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeE---EcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 46788999999999864 455 9999999999884 678999999987654
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.03 E-value=4.6e-11 Score=81.21 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=41.3
Q ss_pred cCcccccccccccCCCceeecCCCCcc-ccHHHHHHHhhcCCCCcccccccccC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
.+..|+||++...+.. +..+| |||. ||..|+.+|.+.+..||+||+++...
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 4678999999876532 22347 9998 99999999999889999999998643
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.02 E-value=3e-11 Score=84.64 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=40.4
Q ss_pred cccCcccccccccccCCCceeecCCCCcc-ccHHHHHHHhhcCCCCcccccccccCCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTD 221 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~~~ 221 (223)
..++..|+||++.+.++ ..+| |||. ||..|+.+| ..||+||+++.....
T Consensus 21 ~~~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFKQK 70 (74)
T ss_dssp HHHHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEEEE
T ss_pred CccCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccCcEE
Confidence 45678999999988764 4455 9999 999999998 889999999876543
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1e-10 Score=88.64 Aligned_cols=49 Identities=31% Similarity=0.596 Sum_probs=41.2
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
..++..|+||++.|.++..+ .| |||.||..||..|+. ..||+||.++..
T Consensus 19 l~~~~~C~IC~~~~~~pv~~--~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCL--GG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCC--CS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred chhCCCCCCCChHhhCccEe--CC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 45688999999999875433 14 999999999999988 889999999854
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.1e-10 Score=80.31 Aligned_cols=51 Identities=25% Similarity=0.638 Sum_probs=40.8
Q ss_pred cccCcccccccccccCCCceeecCCCCcc-ccHHHHHHHhhcCCCCcccccccccCCCCC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTDTW 223 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~~~~~ 223 (223)
..++..|+||++.+.++. .+| |||. ||..|+.+ ...||+||+++......|
T Consensus 22 ~~~~~~C~IC~~~~~~~~---~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIV---FVP-CGHLVTCKQCAEA----VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHHSCSSSCSSCCCBC---CSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCCcCCCCCCCEE---Eec-CCCHHHHHHHhhC----CCCCccCCceecCcEEEe
Confidence 445678999999987744 355 9999 99999965 478999999998766544
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.94 E-value=3.4e-10 Score=102.37 Aligned_cols=48 Identities=29% Similarity=0.701 Sum_probs=41.1
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhh-cCCCCcccccccccC
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKD 219 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~ 219 (223)
...|+||++.+.++ ..+| |||.||..|+.+|+. .+.+||+||.++...
T Consensus 332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 47899999998764 4455 999999999999999 788999999998653
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.87 E-value=4.5e-10 Score=90.25 Aligned_cols=51 Identities=35% Similarity=0.780 Sum_probs=42.9
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC-CCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~-sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.++.. ++ |||+||..||.+|+.... .||+||.++..+
T Consensus 15 ~~~~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQ---TP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCcEE---CC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4567899999999998643 55 999999999999998654 899999998753
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.87 E-value=7.1e-10 Score=98.42 Aligned_cols=54 Identities=24% Similarity=0.703 Sum_probs=41.7
Q ss_pred ccCcccccccccccCCCce----eecCCCCccccHHHHHHHhhcC-----------CCCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEGDSA----RKLPSCGHCFHSECVDKWLTRN-----------GSCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~----~~Lp~CgH~FH~~CI~~WL~~~-----------~sCPvCR~~v~~~ 219 (223)
+...+|+||++.+.+...+ ...++|+|.||..|+.+|++.. +.||.||+++...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4568999999998872222 2234799999999999999753 4699999998743
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=5.9e-10 Score=81.51 Aligned_cols=47 Identities=19% Similarity=0.574 Sum_probs=39.6
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC------CCCcc--cccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN------GSCPV--CREC 215 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~------~sCPv--CR~~ 215 (223)
..+..||||++.|.++..+ |.|||+|+..||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~---~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKN---KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEE---SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEc---CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4678999999999987665 2499999999999999864 48999 9865
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=7e-10 Score=94.66 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=42.0
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC-CCCccccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCK 218 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~-~sCPvCR~~v~~ 218 (223)
.....||||++.|.+|..+ +|||+||..||.+|+..+ .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~----~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEEC----SSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeEC----CCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3568999999999997665 599999999999999864 459999999864
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=75.03 Aligned_cols=48 Identities=29% Similarity=0.643 Sum_probs=38.7
Q ss_pred ccCcccccccccccCCCceeecCCCCcc-ccHHHHHHHhhcCCCCcccccccccCCC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTD 221 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~~~ 221 (223)
.++..|+||++...+ +..+| |+|. ||..|+.. ...||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 356789999987665 55677 9999 99999984 5889999999876443
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=2e-09 Score=78.42 Aligned_cols=48 Identities=23% Similarity=0.614 Sum_probs=40.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhc--------CCCCcc--cccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR--------NGSCPV--CREC 215 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~--------~~sCPv--CR~~ 215 (223)
+..+|+||++++..++.+...+ |+|.||..|+.+++.. ...||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5678999999998877766666 9999999999999863 236999 9988
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.72 E-value=1.2e-09 Score=77.42 Aligned_cols=47 Identities=34% Similarity=0.706 Sum_probs=38.1
Q ss_pred cccCcccccccccccCCCceeecCCCCcc-ccHHHHHHHhhcCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
..++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||.++...
T Consensus 15 l~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 15 LKEAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3456789999998766 45566 9998 999999987 3999999988643
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.71 E-value=4.7e-09 Score=85.61 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=42.5
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC-CCCcccccccccC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCKD 219 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~-~sCPvCR~~v~~~ 219 (223)
.++..||||++.|.+|..+ +|||+|+..||.+|+..+ .+||+||.++...
T Consensus 104 p~~f~CPI~~elm~DPV~~----~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCCeEC----CCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4568999999999987665 499999999999999864 4699999988643
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.69 E-value=1.1e-08 Score=68.86 Aligned_cols=50 Identities=26% Similarity=0.594 Sum_probs=37.8
Q ss_pred ccCcccccccccccCCCceeecC-CCCc---cccHHHHHHHhhc--CCCCccccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLP-SCGH---CFHSECVDKWLTR--NGSCPVCRECVCK 218 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp-~CgH---~FH~~CI~~WL~~--~~sCPvCR~~v~~ 218 (223)
++...|.||+++..+ .+ .+| +|.| .||..|+.+|+.. +.+||+||.++..
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 466789999998433 23 466 3445 9999999999974 6789999998753
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.7e-08 Score=86.57 Aligned_cols=49 Identities=24% Similarity=0.584 Sum_probs=40.9
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcC--CCCcc--ccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPV--CRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~--~sCPv--CR~~v~~ 218 (223)
.+..||||++.|.+|... . .|||.||..||.+|+..+ ..||+ ||+.+..
T Consensus 180 ~el~CPIcl~~f~DPVts--~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLIS--R-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEE--S-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeee--C-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 457899999999987653 2 599999999999999865 46999 9998754
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.52 E-value=1.1e-08 Score=91.49 Aligned_cols=49 Identities=31% Similarity=0.740 Sum_probs=40.3
Q ss_pred hcccCcccccccccccCCCceeecCCCCcc-ccHHHHHHHhhcCCCCcccccccccCC
Q 027422 164 QLDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDT 220 (223)
Q Consensus 164 ~~~~~~~C~ICle~f~~~~~~~~Lp~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~~ 220 (223)
...++..|+||++.+.++ ..+| |||. ||..|+..| ..||+||.++....
T Consensus 291 ~l~~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKGTV 340 (345)
T ss_dssp HHHTTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred hCcCCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence 345678999999998764 4455 9999 999999988 78999999987543
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.48 E-value=3.3e-08 Score=66.74 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=41.1
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccccC
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
...|+||++.+.++. .++.|||+|...||.+|++.+.+||+.++++..+
T Consensus 3 ~~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 468999999999863 3424999999999999999888999999988654
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.21 E-value=7.7e-07 Score=65.42 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=37.3
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhh-cCCCCccccccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCK 218 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~ 218 (223)
-|++|--++.. ..|..| |.|.||.+|+..|.+ +.++||.||.++..
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47888766554 567787 999999999999985 56889999998863
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.10 E-value=2.7e-06 Score=72.19 Aligned_cols=52 Identities=27% Similarity=0.628 Sum_probs=42.3
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC--CCcccccccccCCC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG--SCPVCRECVCKDTD 221 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~--sCPvCR~~v~~~~~ 221 (223)
.-..|.||.+....+ ..+++|+|.||..|+.+|++.+. .||.|+.+.+...+
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 357899999988754 45567999999999999998654 89999998876543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.47 E-value=0.0011 Score=47.91 Aligned_cols=49 Identities=18% Similarity=0.429 Sum_probs=40.4
Q ss_pred cccCcccccccccccCCCceeecCCC-CccccHHHHHHHhhcCCCCcccccccccC
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSC-GHCFHSECVDKWLTRNGSCPVCRECVCKD 219 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~C-gH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 219 (223)
......|..|+...+. .+ .| .|++|..|+...|.....||+|..+++..
T Consensus 25 ~~G~~nCKsCWf~~k~--LV----~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG--LV----ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCSS--EE----ECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccCC--ee----eecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3467889999877553 44 46 59999999999999999999999998754
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.47 E-value=0.011 Score=39.93 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=35.6
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCcccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVC 217 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~ 217 (223)
.+...|.||.+. ..+.....|...||..|+++.+...+ .||.|+....
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 355789999743 33555567999999999998887554 4999987544
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.44 E-value=0.0081 Score=43.32 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=26.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHH-Hh
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK-WL 203 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~-WL 203 (223)
++..|+||.+++..+....-++ |+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 4578999998754433333354 999999999998 53
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.14 E-value=0.014 Score=38.91 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=37.1
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhh-----cCCCCccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECV 216 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-----~~~sCPvCR~~v 216 (223)
++...|+||...+.+.........|...||..|+.--.. .+-.||.|+..-
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 356789999998866565666667999999999864322 345699997643
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.83 E-value=0.035 Score=36.74 Aligned_cols=47 Identities=23% Similarity=0.582 Sum_probs=33.7
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCcccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCREC 215 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~ 215 (223)
..++..|.||.+. ..+.....|...||..|+..-+...+ .||.|+..
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999863 34555557889999999998654332 49999764
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.54 E-value=0.11 Score=36.72 Aligned_cols=35 Identities=20% Similarity=0.501 Sum_probs=24.2
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHH
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~W 202 (223)
..|..|.||-. +...+.. ...-|+.+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-cccccee-ccccccccccHhhcccc
Confidence 46789999953 4433322 22248899999999995
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.52 E-value=0.041 Score=37.70 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=37.0
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhc----CCCCcccccccccC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR----NGSCPVCRECVCKD 219 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~----~~sCPvCR~~v~~~ 219 (223)
+...|+||.... ++........|...||..|+..-... .-.||.|+..+...
T Consensus 17 ~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 456799998765 34455556679999999999865432 33599998876543
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=91.81 E-value=0.022 Score=37.53 Aligned_cols=51 Identities=27% Similarity=0.625 Sum_probs=36.5
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCcccccccccCCC
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVCKDTD 221 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~~~~~ 221 (223)
++..|.||.+. + .+.....|...||..|+.+=+...+ .||.|+......++
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~~ 58 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEE 58 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTTT
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchhc
Confidence 56789999863 3 3445557999999999997554333 49999887665544
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.36 E-value=0.041 Score=36.38 Aligned_cols=48 Identities=21% Similarity=0.454 Sum_probs=33.3
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCcccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVC 217 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~ 217 (223)
.++..|.||.+. + .+.....|...||..|+.+-+...+ .||.|+....
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 356789999752 2 3444456888999999987554332 4999987543
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=90.94 E-value=0.16 Score=33.98 Aligned_cols=35 Identities=29% Similarity=0.599 Sum_probs=27.7
Q ss_pred ccCcccccccccccCCCceeecC-CCCccccHHHHH
Q 027422 166 DNEIGCSICLEKFEEGDSARKLP-SCGHCFHSECVD 200 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp-~CgH~FH~~CI~ 200 (223)
++...|++|.+++.+........ .|...||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45678999999988777777776 799999999975
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=90.19 E-value=0.34 Score=33.97 Aligned_cols=40 Identities=23% Similarity=0.497 Sum_probs=31.1
Q ss_pred ccCcccccccccccCCCceeecC-CCCccccHHHHHHHhhcC
Q 027422 166 DNEIGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKWLTRN 206 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp-~CgH~FH~~CI~~WL~~~ 206 (223)
.....|.+|.+.+++.-.+. .| .=.|.||..|-...++++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHhc
Confidence 35689999999999977772 22 225999999999998743
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.08 E-value=0.1 Score=37.31 Aligned_cols=49 Identities=27% Similarity=0.533 Sum_probs=35.0
Q ss_pred cccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCcccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~ 217 (223)
..++..|.+|.+. + .+.....|.-.||..|+++=+...+ .||.|+..-.
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 3467789999764 3 3445557888999999988665433 4999986543
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.99 E-value=0.15 Score=32.03 Aligned_cols=44 Identities=30% Similarity=0.644 Sum_probs=30.3
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRE 214 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~ 214 (223)
.|.||.+.-.. ..+.....|...||..|+++=+...+ .||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48889765333 34555557999999999986554332 3999975
No 86
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=89.61 E-value=0.11 Score=33.02 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=32.0
Q ss_pred ccccccccccCCCceeecC-CCCccccHHHHHHH----hhcCCCCcccc
Q 027422 170 GCSICLEKFEEGDSARKLP-SCGHCFHSECVDKW----LTRNGSCPVCR 213 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp-~CgH~FH~~CI~~W----L~~~~sCPvCR 213 (223)
.|.+|...+.++....... .|...||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889999887666666666 69999999997532 13556799886
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.40 E-value=0.041 Score=35.66 Aligned_cols=45 Identities=29% Similarity=0.679 Sum_probs=32.0
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRE 214 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~ 214 (223)
.++..|.||.+. + .+.....|...||..|+.+=+...+ .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999864 3 3444557899999999997554333 3888864
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.20 E-value=0.27 Score=33.96 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=33.9
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh-----cCCCCccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECV 216 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-----~~~sCPvCR~~v 216 (223)
....| ||.....+.........|...||..|+.---. .+-.||.|+..-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34556 99888764555556667999999999863211 345699998764
No 89
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=87.58 E-value=0.16 Score=34.58 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=35.2
Q ss_pred cccCcccccccccc-cCCCceeecCCCCccccHHHHHHHhhc--CCCCcccccc
Q 027422 165 LDNEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLTR--NGSCPVCREC 215 (223)
Q Consensus 165 ~~~~~~C~ICle~f-~~~~~~~~Lp~CgH~FH~~CI~~WL~~--~~sCPvCR~~ 215 (223)
..++..|.||.+.- .++..+.....|.-.||..|+..-... .=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34678899998653 344556666679999999999854322 2248888754
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.32 E-value=0.098 Score=35.03 Aligned_cols=47 Identities=26% Similarity=0.572 Sum_probs=33.5
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCccccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECV 216 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~v 216 (223)
.++..|.||.+. + .+.....|...||..|+.+-+...+ .||.|+..-
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 467889999863 3 3445557889999999986554332 499997643
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=87.17 E-value=0.087 Score=35.04 Aligned_cols=53 Identities=21% Similarity=0.454 Sum_probs=36.7
Q ss_pred cccCcccccccccc-cCCCceeecCCCCccccHHHHHHHhh-------cCCCCcccccccc
Q 027422 165 LDNEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLT-------RNGSCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f-~~~~~~~~Lp~CgH~FH~~CI~~WL~-------~~~sCPvCR~~v~ 217 (223)
..++..|.||.... .++..+.....|...||..|+.+=+. ..=.||.|+....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 34678899998764 23345666667999999999986442 2234999976543
No 92
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.03 E-value=0.33 Score=34.79 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=30.2
Q ss_pred cCcccccccccccCCCceeecCC--CC-ccccHHHHHHHhhc----CCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTR----NGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~--Cg-H~FH~~CI~~WL~~----~~sCPvCR~~v~~ 218 (223)
+...| ||.+... +. .....+ |. ..||..|+. |.. +-.||.|+..-..
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 44667 9988643 44 333445 55 689999997 433 2359999876543
No 93
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.74 E-value=0.1 Score=35.51 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=35.5
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHh----hcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL----TRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL----~~~~sCPvCR~~v~~ 218 (223)
....| ||.....++........|...||..|+.--- ..+-.||.|+..-.+
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 34678 7988776666566666799999999986432 233459999875443
No 94
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=86.72 E-value=0.17 Score=39.91 Aligned_cols=49 Identities=24% Similarity=0.547 Sum_probs=34.5
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHh-----hcCCCCcccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL-----TRNGSCPVCREC 215 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL-----~~~~sCPvCR~~ 215 (223)
++...| +|.....+.........|...||..|+.--- ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 356778 9998876555566666799999999985221 234469999864
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.64 E-value=0.19 Score=35.71 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=36.1
Q ss_pred ccCcccccccccc-cCCCceeecCCCCccccHHHHHHHhhc--CCCCcccccccc
Q 027422 166 DNEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLTR--NGSCPVCRECVC 217 (223)
Q Consensus 166 ~~~~~C~ICle~f-~~~~~~~~Lp~CgH~FH~~CI~~WL~~--~~sCPvCR~~v~ 217 (223)
+++..|.||.+.- .++..+.....|.-.||..|+..-+.. .=.||.|+....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 4678899998753 334456666679999999999864322 224999977544
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.47 E-value=0.2 Score=36.95 Aligned_cols=45 Identities=38% Similarity=0.688 Sum_probs=31.3
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRE 214 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~ 214 (223)
.|.||.+.-.++..+.....|...||..|+++-|...+ .||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57778764333345555567999999999987665432 4999985
No 97
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.17 E-value=0.39 Score=47.84 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=41.7
Q ss_pred cCcccccccccccCCCceeecCCCC-ccccHHHHHHHhhcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCG-HCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~Cg-H~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
++..|||-++-+.+|..+ +-| ++|-..+|.+|+..+++||+=|+++..
T Consensus 890 ~~F~cPIs~~lM~DPVil----psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVIL----PASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhCCeEc----CCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 467899999999997665 476 699999999999999999999998864
No 98
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.97 E-value=0.24 Score=33.91 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=33.5
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHH------h---hcCCCCcccccccccC
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW------L---TRNGSCPVCRECVCKD 219 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~W------L---~~~~sCPvCR~~v~~~ 219 (223)
...| ||......+ .......|...||..|+.-- + ..+-.||.|+..-.+.
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
Confidence 4566 898876543 44455569999999998521 1 2456799998765443
No 99
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=85.79 E-value=0.61 Score=30.69 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=32.0
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVC 212 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvC 212 (223)
...|--|+..|.+.. ....|+|++.||.+|=.---+.-..||-|
T Consensus 15 ~~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 15 ERFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CCEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CCcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 356999999986432 35678899999999954433444679988
No 100
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=85.49 E-value=0.5 Score=32.08 Aligned_cols=46 Identities=28% Similarity=0.572 Sum_probs=30.0
Q ss_pred cCcccccccccccCCCceeecCC--CC-ccccHHHHHHHhhcC----CCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTRN----GSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~--Cg-H~FH~~CI~~WL~~~----~sCPvCR~~v~ 217 (223)
+...| ||.+.. .+. ...... |. ..||..|+. |... -.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~-~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCS-CSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCC-CCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 45667 898754 344 444445 66 699999998 4433 24999987544
No 101
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=83.80 E-value=0.21 Score=33.72 Aligned_cols=46 Identities=22% Similarity=0.572 Sum_probs=31.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh---cCCCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~---~~~sCPvCR~ 214 (223)
+...| ||..... +........|...||..|+.---. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45678 9987665 444555557999999999864321 2345998875
No 102
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=83.65 E-value=0.57 Score=34.24 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=35.2
Q ss_pred CcccccccccccCCCceeecC-CCCccccHHHHHHH------h----hcCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKW------L----TRNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp-~CgH~FH~~CI~~W------L----~~~~sCPvCR~~v~ 217 (223)
...|+||.+.+.+........ .|...||..|+.-= + ..+-.||.|+..-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 467999999986655555554 69999999997521 1 03346999987543
No 103
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.93 E-value=0.43 Score=32.86 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=33.9
Q ss_pred cCcccccccccccCCCceeecC--CCCccccHHHHHHHh---------hcCCCCcccccccccC
Q 027422 167 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWL---------TRNGSCPVCRECVCKD 219 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp--~CgH~FH~~CI~~WL---------~~~~sCPvCR~~v~~~ 219 (223)
....| ||-.....+. ..... .|...||..|+.--- ..+-.||.|+..-.+.
T Consensus 15 ~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 45677 8988755543 44444 699999999986321 1245699998765443
No 104
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=82.55 E-value=0.39 Score=42.87 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh-------cCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-------RNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-------~~~sCPvCR~~v~ 217 (223)
+...|.+|...|..-..--.+..||++||..|...... ....|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 35689999998865333333447999999999987642 2245777765543
No 105
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=82.27 E-value=0.36 Score=31.60 Aligned_cols=43 Identities=33% Similarity=0.665 Sum_probs=28.4
Q ss_pred cCcccccccccccCCCceeecCC--CC-ccccHHHHHHHhhcC----CCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTRN----GSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~--Cg-H~FH~~CI~~WL~~~----~sCPvCR~ 214 (223)
+...| ||.+.. .+. .....+ |. ..||..|+. |... -.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 45567 998764 343 444555 66 699999998 4433 24999975
No 106
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=81.94 E-value=1.6 Score=33.74 Aligned_cols=46 Identities=22% Similarity=0.459 Sum_probs=32.6
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhh-----------cCCCCcccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----------RNGSCPVCREC 215 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-----------~~~sCPvCR~~ 215 (223)
..+..|.+|-+. ++ +.....|...||..|+.+-+. ..=.||.|+..
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 356889999653 33 445556899999999997663 12259999853
No 107
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.81 E-value=0.24 Score=41.09 Aligned_cols=52 Identities=23% Similarity=0.512 Sum_probs=35.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh--------cCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--------RNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~--------~~~sCPvCR~~v~~ 218 (223)
++..|.+|...|..-..--....||++||..|...... ....|-.|-..+..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhh
Confidence 34689999999876443344557999999999876532 12347777665543
No 108
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.52 E-value=0.39 Score=34.62 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=30.4
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhc---CCCCccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR---NGSCPVCRE 214 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~---~~sCPvCR~ 214 (223)
..| ||-.....+. +.....|...||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 567 8977765554 4455579999999998753322 235999974
No 109
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=80.65 E-value=0.42 Score=31.30 Aligned_cols=43 Identities=30% Similarity=0.658 Sum_probs=27.7
Q ss_pred cCcccccccccccCCCceeecCC--CC-ccccHHHHHHHhhcC----CCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTRN----GSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~--Cg-H~FH~~CI~~WL~~~----~sCPvCR~ 214 (223)
+...| ||.+.- .+. .....+ |. ..||..|+. |... -.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44566 998763 343 444445 55 689999998 4433 24999865
No 110
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.41 E-value=0.19 Score=35.96 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=34.4
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCcccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCREC 215 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~ 215 (223)
.++..|.||.+.-. ...+.....|...||..|+.+=+...+ .||.|+..
T Consensus 14 ~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 35678999987543 334555667999999999986554333 39999764
No 111
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.34 E-value=0.53 Score=34.37 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=27.1
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHhh
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT 204 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~ 204 (223)
.++..|.||.+.=+.. .+.....|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccc
Confidence 4678999997753322 2334457999999999987764
No 112
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=78.91 E-value=0.55 Score=31.02 Aligned_cols=43 Identities=33% Similarity=0.654 Sum_probs=28.0
Q ss_pred cCcccccccccccCCCceeecCC--CC-ccccHHHHHHHhhc----CCCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTR----NGSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~--Cg-H~FH~~CI~~WL~~----~~sCPvCR~ 214 (223)
+...| ||.+.. .+. .....+ |. ..||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 45567 998753 343 444445 55 899999997 332 234999975
No 113
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.16 E-value=0.25 Score=35.02 Aligned_cols=53 Identities=17% Similarity=0.470 Sum_probs=36.9
Q ss_pred ccCcccccccccccC-CCceeecCCCCccccHHHHHHHhhc--------CCCCccccccccc
Q 027422 166 DNEIGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTR--------NGSCPVCRECVCK 218 (223)
Q Consensus 166 ~~~~~C~ICle~f~~-~~~~~~Lp~CgH~FH~~CI~~WL~~--------~~sCPvCR~~v~~ 218 (223)
+.+..|.||...-.. ...+.....|...||..|+.+=|.. .=.||.|+.....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 356789999875332 3456666679999999999876542 2249999876543
No 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=77.59 E-value=3.4 Score=30.15 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=24.4
Q ss_pred cCcccccccccc-----cCCCceeecCCCCccccHHHHH
Q 027422 167 NEIGCSICLEKF-----EEGDSARKLPSCGHCFHSECVD 200 (223)
Q Consensus 167 ~~~~C~ICle~f-----~~~~~~~~Lp~CgH~FH~~CI~ 200 (223)
+...|.+|+..= ..++.+.....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 556899998752 2234455556799999999995
No 115
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.03 E-value=1.4 Score=39.37 Aligned_cols=49 Identities=18% Similarity=0.398 Sum_probs=31.9
Q ss_pred cCcccccccccccCCCceeecCCCCcc--ccHHHHHHHhhcC--CCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHC--FHSECVDKWLTRN--GSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~--FH~~CI~~WL~~~--~sCPvCR~~v~~ 218 (223)
-...||+=...+..+..- . .|.|. |-..=+.....+. -.||+|.+.+..
T Consensus 248 vSL~CPlS~~ri~~PvRg--~-~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKS--I-NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EESBCTTTSSBCSSEEEE--T-TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred EeecCCCccccccccCcC--C-cCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 357899998888775443 4 59998 4444344433333 359999988753
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=75.86 E-value=1.7 Score=29.37 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=25.6
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHH
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~W 202 (223)
+..|.+|...|..-..--....||++||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 35899999998754333334479999999997643
No 117
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=75.79 E-value=1.5 Score=38.88 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=32.2
Q ss_pred CcccccccccccCCCceeecCCCCcc--ccHHHHHHHhhcCC--CCccccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHC--FHSECVDKWLTRNG--SCPVCRECVCK 218 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~--FH~~CI~~WL~~~~--sCPvCR~~v~~ 218 (223)
...||+=...++.+..- . .|.|. |-..=+.....+.+ .||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg--~-~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRA--V-TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEEEE--T-TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCCcC--C-CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 57899998888775443 4 59998 44444444433333 59999998754
No 118
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=75.60 E-value=1.6 Score=31.98 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=30.8
Q ss_pred cccCcccccccccccCCCceeecC--CCCccccHHHHHHHhhcCC----CCcccccccc
Q 027422 165 LDNEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWLTRNG----SCPVCRECVC 217 (223)
Q Consensus 165 ~~~~~~C~ICle~f~~~~~~~~Lp--~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~ 217 (223)
..++..|.+|.+ .+ .+.... .|...||..|+. |...+ .||-|+-.+.
T Consensus 12 ~~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 346778999973 23 344443 488899999997 54333 3887765544
No 119
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.51 E-value=0.49 Score=32.74 Aligned_cols=45 Identities=29% Similarity=0.601 Sum_probs=28.7
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhcC-----CCCcccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-----GSCPVCREC 215 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~-----~sCPvCR~~ 215 (223)
.|.||.+.- ++..+.....|...||..|+.+-|... =.||.|+.+
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 466665443 334455555788999999999766532 249999863
No 120
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=74.47 E-value=2 Score=30.30 Aligned_cols=50 Identities=24% Similarity=0.535 Sum_probs=33.3
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh------cCCCCccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT------RNGSCPVCRECV 216 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~------~~~sCPvCR~~v 216 (223)
+...|.+|...|..-..--....||++||..|...+.. ....|-.|-..+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34689999999875443334557999999999876542 123366665443
No 121
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=74.32 E-value=4.2 Score=30.82 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=31.7
Q ss_pred ccCcccccccccccCCCceeecCCCCccccHHHHHHHh------h-----cCCCCcccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL------T-----RNGSCPVCREC 215 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL------~-----~~~sCPvCR~~ 215 (223)
..+..|.||-+. ..+.....|-..||..|+.+-+ + ..=.|++|+-.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 356779999753 3344455789999999999752 1 11259999754
No 122
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=74.04 E-value=1.9 Score=32.30 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=26.8
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHH
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~W 202 (223)
+...|.+|...|..-..--....||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 346899999998754433345579999999997654
No 123
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.90 E-value=0.84 Score=31.47 Aligned_cols=45 Identities=24% Similarity=0.572 Sum_probs=30.8
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcC-----CCCccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-----GSCPVCRE 214 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~-----~sCPvCR~ 214 (223)
..|.||...- ++..+.....|...||..|+++=|... =.||.|+.
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 4788887643 334455555799999999998655432 24999875
No 124
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=73.59 E-value=1.9 Score=29.88 Aligned_cols=51 Identities=16% Similarity=0.369 Sum_probs=34.2
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh--------cCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--------RNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~--------~~~sCPvCR~~v~ 217 (223)
+...|.+|...|..-..--....||++||..|...... ....|-.|-..+.
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 45689999999876443334457999999999876531 2234766655544
No 125
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=73.47 E-value=0.33 Score=32.54 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=29.4
Q ss_pred cCcccccccccccCCCceeecC--CCCccccHHHHHHHh---h-----cCCCCcccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWL---T-----RNGSCPVCREC 215 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp--~CgH~FH~~CI~~WL---~-----~~~sCPvCR~~ 215 (223)
+...| ||-.....+..+ ... .|...||..|+.--- . .+-.||.||..
T Consensus 9 ~~v~C-~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CEECC-TTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCEEe-ECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 34567 897766665544 332 488899999973210 1 13459999853
No 126
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=72.54 E-value=2 Score=29.72 Aligned_cols=51 Identities=22% Similarity=0.525 Sum_probs=33.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh------cCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT------RNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~------~~~sCPvCR~~v~ 217 (223)
+...|.+|...|..-..--....||++||..|....+. ....|-.|-..+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 44689999999875443334457999999999876432 1123666655544
No 127
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.34 E-value=0.49 Score=35.57 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=31.4
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCREC 215 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~ 215 (223)
....|..|...|..-..--....||++||..|..........|-.|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3468999999987543333455799999999977665555567666543
No 128
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=71.22 E-value=1.4 Score=29.85 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=32.7
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhh-----cCCCCccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECV 216 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-----~~~sCPvCR~~v 216 (223)
..-.||...+..+........|.-.||..|+.---. ..-.||.|+..-
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 334589887765555556667999999999963321 234699998653
No 129
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=71.03 E-value=1.8 Score=35.40 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=27.1
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHH
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~W 202 (223)
++..|.+|...|..-..--....||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 357899999998754433345579999999997654
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=70.87 E-value=0.98 Score=30.47 Aligned_cols=45 Identities=29% Similarity=0.624 Sum_probs=29.5
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhc-----CCCCcccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-----NGSCPVCREC 215 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~-----~~sCPvCR~~ 215 (223)
.|.||.+.- ++..+.....|...||..|+++=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456776542 23445555578999999999865543 2259999753
No 131
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.75 E-value=2.3 Score=29.43 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=25.9
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHH
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~W 202 (223)
+...|.+|...|..-..--....||++||..|....
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 446899999998654332334479999999997654
No 132
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=69.71 E-value=2.5 Score=29.69 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=33.5
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhh-------cCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-------RNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-------~~~sCPvCR~~v~ 217 (223)
+...|.+|...|..-..--....||++||..|....+. ....|-.|-..+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 44689999999876443333447999999999765431 2234666655443
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=69.67 E-value=2.2 Score=32.49 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=26.4
Q ss_pred cCccccccccccc-CCCceeecCCCCccccHHHHHH
Q 027422 167 NEIGCSICLEKFE-EGDSARKLPSCGHCFHSECVDK 201 (223)
Q Consensus 167 ~~~~C~ICle~f~-~~~~~~~Lp~CgH~FH~~CI~~ 201 (223)
++..|.+|...|. ....-+....|.|.+|..|-..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 5678999999993 3344456667999999998553
No 134
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=68.98 E-value=1.2 Score=31.62 Aligned_cols=44 Identities=27% Similarity=0.547 Sum_probs=27.8
Q ss_pred ccCcccccccccccCCCceeecCCCC---ccccHHHHHHHhhc----CCCCcc-ccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSCG---HCFHSECVDKWLTR----NGSCPV-CRE 214 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~Cg---H~FH~~CI~~WL~~----~~sCPv-CR~ 214 (223)
.+...| ||.+.. .++ ......|. ..||..|+. |.. +-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~-~g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC-SSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC-CCC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345667 998743 344 44444555 689999986 332 235999 974
No 135
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=68.60 E-value=0.93 Score=28.58 Aligned_cols=42 Identities=21% Similarity=0.528 Sum_probs=27.3
Q ss_pred ccccccccCCCceeecCCCCccccHHHHHHHh---hcCCCCccccc
Q 027422 172 SICLEKFEEGDSARKLPSCGHCFHSECVDKWL---TRNGSCPVCRE 214 (223)
Q Consensus 172 ~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL---~~~~sCPvCR~ 214 (223)
.||..... +........|...||..|+.--- ..+-.||.|+.
T Consensus 7 C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 36776554 43444555699999999986322 23346999875
No 136
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=68.09 E-value=3.2 Score=30.43 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=23.7
Q ss_pred ccccccccccc------CCCceeecCCCCccccHHHHHHH
Q 027422 169 IGCSICLEKFE------EGDSARKLPSCGHCFHSECVDKW 202 (223)
Q Consensus 169 ~~C~ICle~f~------~~~~~~~Lp~CgH~FH~~CI~~W 202 (223)
..|.||+..-. +++.+.....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987541 22345555579999999998754
No 137
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=66.61 E-value=1.5 Score=36.42 Aligned_cols=46 Identities=28% Similarity=0.580 Sum_probs=27.4
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcC-----CCCcccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-----GSCPVCREC 215 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~-----~sCPvCR~~ 215 (223)
..|.+|.+.- ++..+.....|...||..|+.+=|... =.||.|+.+
T Consensus 175 c~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3588886642 233445566799999999999655432 249999753
No 138
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.86 E-value=0.72 Score=34.02 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=32.7
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCcccccccccC
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVCKD 219 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~~~ 219 (223)
.|.||.+.-.. ..+.....|...||..|+.+=+...+ .||.|+....+.
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 57778665333 34445557999999999986554333 399998765543
No 139
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=63.44 E-value=1.6 Score=31.74 Aligned_cols=47 Identities=21% Similarity=0.561 Sum_probs=31.1
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhhcCC----CCcccccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVC 217 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~ 217 (223)
.|.+|.+.-.+ ..+.....|...||..|+++=+...+ .||.|+.-..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 46677654332 34555667999999999987555332 4998876543
No 140
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.78 E-value=3.3 Score=27.85 Aligned_cols=45 Identities=29% Similarity=0.555 Sum_probs=27.3
Q ss_pred cCcccccccccccCCCceeecCCCC---ccccHHHHHHHhhc----CCCCccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCG---HCFHSECVDKWLTR----NGSCPVCRECV 216 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~Cg---H~FH~~CI~~WL~~----~~sCPvCR~~v 216 (223)
+...| ||.+. ..+..+ ....|. ..||..|+. |.. +-.||.|+...
T Consensus 5 ~~~yC-~C~~~-~~g~MI-~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQV-SYGEMV-GCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCC-CCSSEE-CCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCC-CCCCEe-EeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 34556 58775 344443 333443 699999997 232 23499998654
No 141
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=60.45 E-value=21 Score=25.31 Aligned_cols=51 Identities=22% Similarity=0.400 Sum_probs=36.5
Q ss_pred cCcccccccccccC---CCceeecCCCCccccHHHHHHHh-hcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEE---GDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~---~~~~~~Lp~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~ 217 (223)
....|.||-++.-. ++.......|+--.|..|.+-=. +.+..||-|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45789999988543 33333344577788999987544 46678999999885
No 142
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=56.31 E-value=2.8 Score=30.30 Aligned_cols=41 Identities=22% Similarity=0.610 Sum_probs=26.2
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
+..||+|.++++... ++.+|..|-.. +.....||-|.+++.
T Consensus 32 ~~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH
Confidence 378999998876422 23334455332 455667999988874
No 143
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=54.77 E-value=6.4 Score=21.91 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=20.0
Q ss_pred cccccccccccCCCceeecCCCCccccHHH
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSEC 198 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~C 198 (223)
..|+.|-...-..+.+. .=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 57999988877665553 2467899888
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.44 E-value=2.5 Score=30.92 Aligned_cols=23 Identities=26% Similarity=0.686 Sum_probs=16.0
Q ss_pred CCCccccHHHHHHHhhcCCCCccccccc
Q 027422 189 SCGHCFHSECVDKWLTRNGSCPVCRECV 216 (223)
Q Consensus 189 ~CgH~FH~~CI~~WL~~~~sCPvCR~~v 216 (223)
+||+.| .+=+.....||.|+..-
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCC
T ss_pred hCcCee-----cccCCCCCCCcCCCCCc
Confidence 699998 12234557799999764
No 145
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.82 E-value=1.7 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=13.2
Q ss_pred cCcccccccccccCCCce
Q 027422 167 NEIGCSICLEKFEEGDSA 184 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~ 184 (223)
+...||+|+.++...+.+
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 347899999888775544
No 146
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=47.28 E-value=7.5 Score=28.15 Aligned_cols=11 Identities=27% Similarity=1.060 Sum_probs=10.3
Q ss_pred ccHHHHHHHhh
Q 027422 194 FHSECVDKWLT 204 (223)
Q Consensus 194 FH~~CI~~WL~ 204 (223)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 147
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.01 E-value=11 Score=29.29 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=31.0
Q ss_pred cCcccccccccccCC-CceeecCCCCccccHHHHHHHhhcCCC--Cccccc
Q 027422 167 NEIGCSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLTRNGS--CPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~-~~~~~Lp~CgH~FH~~CI~~WL~~~~s--CPvCR~ 214 (223)
++..|.+|...|..- ..-.....|.|.+|..|- .|...... |-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 578999999986432 223445579999999997 24433222 666654
No 148
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=46.66 E-value=7.7 Score=28.02 Aligned_cols=11 Identities=45% Similarity=1.217 Sum_probs=10.4
Q ss_pred ccHHHHHHHhh
Q 027422 194 FHSECVDKWLT 204 (223)
Q Consensus 194 FH~~CI~~WL~ 204 (223)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 149
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=46.28 E-value=16 Score=28.61 Aligned_cols=34 Identities=29% Similarity=0.600 Sum_probs=25.5
Q ss_pred cCcccccccccccCCCceeecC--CCCccccHHHHHHHhh
Q 027422 167 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWLT 204 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp--~CgH~FH~~CI~~WL~ 204 (223)
.+..|.||-+. ..+.... .|...||..||+.++.
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 46789999753 3444444 6999999999999875
No 150
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=45.48 E-value=5.1 Score=36.92 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=32.0
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhh-----cCCCCcccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCREC 215 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~-----~~~sCPvCR~~ 215 (223)
..| ||......+.....+..|...||..|+.---. .+-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 445 99888764555666667999999999853221 23469999864
No 151
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=44.87 E-value=10 Score=25.29 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=24.4
Q ss_pred ccCcccccccccccCCCceeecCCC-CccccHHHHHHH
Q 027422 166 DNEIGCSICLEKFEEGDSARKLPSC-GHCFHSECVDKW 202 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp~C-gH~FH~~CI~~W 202 (223)
++..-|.||.++ ..++-+. | +-+||..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 456789999887 2356564 9 789999998875
No 152
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.69 E-value=11 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.431 Sum_probs=22.2
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
...|+.|-+.+..++.+.. -+..||.+| ..|..|+.++.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccC
Confidence 3567777777765554432 345566555 33566666554
No 153
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=43.24 E-value=8 Score=26.89 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=8.4
Q ss_pred cccccccccccCC
Q 027422 169 IGCSICLEKFEEG 181 (223)
Q Consensus 169 ~~C~ICle~f~~~ 181 (223)
..||.|.+++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 4677777766543
No 154
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=40.23 E-value=2.5 Score=29.37 Aligned_cols=43 Identities=23% Similarity=0.536 Sum_probs=26.5
Q ss_pred cccccccccc--CCCceeecCCCCccccHHHHHHHhhcCC--CCccc
Q 027422 170 GCSICLEKFE--EGDSARKLPSCGHCFHSECVDKWLTRNG--SCPVC 212 (223)
Q Consensus 170 ~C~ICle~f~--~~~~~~~Lp~CgH~FH~~CI~~WL~~~~--sCPvC 212 (223)
-||=|-..+. .+......|.|+|.||..|-.+|=++|. +|..-
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 3665644332 1223356778999999999998844443 45443
No 155
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.15 E-value=4.7 Score=27.64 Aligned_cols=40 Identities=23% Similarity=0.576 Sum_probs=24.8
Q ss_pred Cccccc--ccccccC--CCceeecC-----CCCccccHHHHHHHhhcCCCC
Q 027422 168 EIGCSI--CLEKFEE--GDSARKLP-----SCGHCFHSECVDKWLTRNGSC 209 (223)
Q Consensus 168 ~~~C~I--Cle~f~~--~~~~~~Lp-----~CgH~FH~~CI~~WL~~~~sC 209 (223)
..-||- |...+.. .......| .|+|.||..|-..|-. .+|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccc
Confidence 345665 5443322 22334565 7999999999999843 445
No 156
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=40.14 E-value=19 Score=32.20 Aligned_cols=44 Identities=30% Similarity=0.620 Sum_probs=30.9
Q ss_pred cCcccccccccccCCCceeecC--CCCccccHHHHHHHhh----------cCCCCccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWLT----------RNGSCPVCRE 214 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp--~CgH~FH~~CI~~WL~----------~~~sCPvCR~ 214 (223)
.+..|.+|-+. ..+.... .|...||..||+..+. ..=.|=+|.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 46789999653 3444444 7999999999999873 1224777764
No 157
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=39.45 E-value=19 Score=26.12 Aligned_cols=48 Identities=17% Similarity=0.424 Sum_probs=24.3
Q ss_pred cccccccccccC-CCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 169 IGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 169 ~~C~ICle~f~~-~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
..|..|...+.. +.... . .=+..||..|..+-+.....|+.|..+|..
T Consensus 30 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLY-Y-KLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CBCTTTCCBCSSTTCCEE-E-ETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cccCcCCCccccCCCeEE-E-ECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 556666666542 11111 1 134556666666544333366666666643
No 158
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=39.24 E-value=10 Score=29.77 Aligned_cols=9 Identities=44% Similarity=1.006 Sum_probs=6.3
Q ss_pred CCCcccccc
Q 027422 207 GSCPVCREC 215 (223)
Q Consensus 207 ~sCPvCR~~ 215 (223)
..||+|..+
T Consensus 154 ~~CP~Cg~~ 162 (170)
T 3pwf_A 154 EYCPVCGAP 162 (170)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 468888754
No 159
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=39.04 E-value=16 Score=23.97 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=27.7
Q ss_pred CcccccccccccCCCceeecCCCCccccH-HHHHHHhhcCCCCcccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHS-ECVDKWLTRNGSCPVCREC 215 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~-~CI~~WL~~~~sCPvCR~~ 215 (223)
=..|..|...+....... .=+..||. .|..+- ..+.|-.|...
T Consensus 27 CF~C~~C~~~L~~~~~~~---~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGHAE---HEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp TCBCTTTCCBCCTTTEEE---ETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCCccccCccCCCCceEC---cCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 367888888877654322 24677888 587663 44567777643
No 160
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.37 E-value=6.3 Score=25.61 Aligned_cols=39 Identities=21% Similarity=0.438 Sum_probs=25.0
Q ss_pred cCcccccccccccCCCc--eeecCC--CCccccHHHHHHHhhc
Q 027422 167 NEIGCSICLEKFEEGDS--ARKLPS--CGHCFHSECVDKWLTR 205 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~--~~~Lp~--CgH~FH~~CI~~WL~~ 205 (223)
....||-|...++...- -..... |+|.||..|..+|-..
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 34578888777665431 112223 8888999998888643
No 161
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.70 E-value=22 Score=25.73 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=34.4
Q ss_pred cccccccccccC-CCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 169 IGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 169 ~~C~ICle~f~~-~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
+.|..|...+.+ +... .. .=+..||..|..+-+..+..|-.|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~-~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeE-EE-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 678889888753 1111 11 356789999998877666689999998874
No 162
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.06 E-value=24 Score=23.63 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=19.8
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHH
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSEC 198 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~C 198 (223)
....|.-|-+.+...+.+.. -+..||..|
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C 42 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC 42 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc
Confidence 45689999888876655542 356777776
No 163
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=36.73 E-value=11 Score=20.87 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=7.9
Q ss_pred CCCccccccccc
Q 027422 207 GSCPVCRECVCK 218 (223)
Q Consensus 207 ~sCPvCR~~v~~ 218 (223)
..||+|+...++
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 358888776554
No 164
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=34.94 E-value=4 Score=29.67 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=27.7
Q ss_pred ccccccccccCCCceeecCCCCccccHHHHHHHhh----c----CCCCcccccc
Q 027422 170 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT----R----NGSCPVCREC 215 (223)
Q Consensus 170 ~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~----~----~~sCPvCR~~ 215 (223)
.|..|.+....+..+.....|.+.||..|...... . .-.||.|+..
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 45555555444444555567999999999865321 1 1249999753
No 165
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=34.66 E-value=35 Score=24.51 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=29.4
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
..|..|...+....... .=+..||..|..+- ..+.|+.|.++|..
T Consensus 31 F~C~~C~~~L~~~~f~~---~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVM---VNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTSEEEE---ETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcCEEEe---ECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 67888877776432221 24667888887663 45678888888875
No 166
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=33.98 E-value=21 Score=27.97 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=22.6
Q ss_pred cccccccccccC-CCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 169 IGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 169 ~~C~ICle~f~~-~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
+.|..|...+.. +..... .=+..||..|..+-+..+..|+.|.++|.
T Consensus 33 F~C~~C~~~L~~~g~~~~~--~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYT--KSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEE--ETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cccCCCCcccccCCceEEE--eCCccccccccccccccCCccccCCCccc
Confidence 456666555543 111111 13455666665554333335666666654
No 167
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=33.77 E-value=8.1 Score=25.80 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=5.5
Q ss_pred ccccccccccCC
Q 027422 170 GCSICLEKFEEG 181 (223)
Q Consensus 170 ~C~ICle~f~~~ 181 (223)
.|+.|-+.+..+
T Consensus 9 ~C~~C~~~I~~~ 20 (81)
T 1a7i_A 9 KCGACGRTVYHA 20 (81)
T ss_dssp BCSSSCCBCSST
T ss_pred cCcCcCccccCc
Confidence 455554444333
No 168
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=33.33 E-value=17 Score=34.78 Aligned_cols=50 Identities=20% Similarity=0.565 Sum_probs=31.6
Q ss_pred cCcccccccccccCCCceee------cCCCCcc--------------------ccHHHHHHHhh--------cCCCCccc
Q 027422 167 NEIGCSICLEKFEEGDSARK------LPSCGHC--------------------FHSECVDKWLT--------RNGSCPVC 212 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~------Lp~CgH~--------------------FH~~CI~~WL~--------~~~sCPvC 212 (223)
+--.|+=|+.|+.++..-|. +.+||-. +|..|-.++-. +...||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 34678888888877654321 2235432 78889888754 33469999
Q ss_pred cccc
Q 027422 213 RECV 216 (223)
Q Consensus 213 R~~v 216 (223)
-=.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 5444
No 169
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=33.18 E-value=17 Score=35.39 Aligned_cols=50 Identities=22% Similarity=0.511 Sum_probs=33.6
Q ss_pred cCcccccccccccCCCceee------cCCCCcc--------------------ccHHHHHHHhh--------cCCCCccc
Q 027422 167 NEIGCSICLEKFEEGDSARK------LPSCGHC--------------------FHSECVDKWLT--------RNGSCPVC 212 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~------Lp~CgH~--------------------FH~~CI~~WL~--------~~~sCPvC 212 (223)
+--.|+=|+.|+.++..-|. +.+||-. .|..|-.++-. +...||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 34689999999988764332 2245533 78999988854 33469999
Q ss_pred cccc
Q 027422 213 RECV 216 (223)
Q Consensus 213 R~~v 216 (223)
-=.+
T Consensus 185 GP~l 188 (772)
T 4g9i_A 185 GPSY 188 (772)
T ss_dssp SCCE
T ss_pred CceE
Confidence 6544
No 170
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=33.03 E-value=11 Score=30.11 Aligned_cols=8 Identities=38% Similarity=1.053 Sum_probs=6.2
Q ss_pred CCcccccc
Q 027422 208 SCPVCREC 215 (223)
Q Consensus 208 sCPvCR~~ 215 (223)
.||+|..+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 78888775
No 171
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=32.04 E-value=10 Score=29.53 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=0.0
Q ss_pred cccchhhhccccC
Q 027422 55 GGAIVGTIFGAMK 67 (223)
Q Consensus 55 ~g~~~ga~~g~~~ 67 (223)
.|+++||.+|+++
T Consensus 4 ~ga~~ga~~g~~~ 16 (169)
T 3ldt_A 4 SGTLIGAAAGGTV 16 (169)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 172
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=31.39 E-value=9.6 Score=29.67 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=3.4
Q ss_pred hhcccchhhhccccCCcc
Q 027422 53 ALGGAIVGTIFGAMKGQT 70 (223)
Q Consensus 53 a~~g~~~ga~~g~~~G~~ 70 (223)
|+.|+.+|+.+|+.+|..
T Consensus 6 a~~ga~~g~~~g~~ig~~ 23 (169)
T 3ldt_A 6 TLIGAAAGGTVGLVASIY 23 (169)
T ss_dssp -----------CCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555533
No 173
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=30.98 E-value=10 Score=28.27 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=1.6
Q ss_pred hhhhccccCC
Q 027422 59 VGTIFGAMKG 68 (223)
Q Consensus 59 ~ga~~g~~~G 68 (223)
+||++|.|.|
T Consensus 8 aGAvvGgl~G 17 (121)
T 1tpx_A 8 AGAVVGGLGG 17 (121)
T ss_dssp ------CCTT
T ss_pred HhHHhhcchh
Confidence 3444444433
No 174
>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...
Probab=30.76 E-value=11 Score=28.52 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=0.7
Q ss_pred cccchhhhcc
Q 027422 55 GGAIVGTIFG 64 (223)
Q Consensus 55 ~g~~~ga~~g 64 (223)
|||++|.++|
T Consensus 29 AGAVvGGlgG 38 (142)
T 3heq_A 29 AGAVVGGLGG 38 (142)
T ss_dssp --------CC
T ss_pred hhhhhhccch
Confidence 4444443333
No 175
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.75 E-value=23 Score=23.62 Aligned_cols=40 Identities=25% Similarity=0.550 Sum_probs=25.8
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
....|+-|-+.+..++.+..+ +..||.+| ..|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~---~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLAL---DKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEET---TEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEEC---Cccccccc--------CCcCcCCCCcC
Confidence 456788888888766655433 45666665 34667776664
No 176
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=30.69 E-value=18 Score=35.09 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=33.5
Q ss_pred cCcccccccccccCCCceee------cCCCCcc--------------------ccHHHHHHHhh--------cCCCCccc
Q 027422 167 NEIGCSICLEKFEEGDSARK------LPSCGHC--------------------FHSECVDKWLT--------RNGSCPVC 212 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~------Lp~CgH~--------------------FH~~CI~~WL~--------~~~sCPvC 212 (223)
+--.|+=|+.++.++..-|. +.+||-. .|..|-.++-. +...||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 34689999999987764322 2246533 68999999854 33469999
Q ss_pred cccc
Q 027422 213 RECV 216 (223)
Q Consensus 213 R~~v 216 (223)
-=.+
T Consensus 190 GP~l 193 (761)
T 3vth_A 190 GPSL 193 (761)
T ss_dssp SCCE
T ss_pred CCee
Confidence 5544
No 177
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=30.57 E-value=4.2 Score=26.67 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=28.3
Q ss_pred ccCccccccccc-ccCCCceeecCCCCccccHHHHHHHhhcCCC----Cccccc
Q 027422 166 DNEIGCSICLEK-FEEGDSARKLPSCGHCFHSECVDKWLTRNGS----CPVCRE 214 (223)
Q Consensus 166 ~~~~~C~ICle~-f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~s----CPvCR~ 214 (223)
++...|.||+.. |.++.--.-- -|.-.||..|--.|-.+.+. |-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~-yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCS-YCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBT-TTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCcccc-ccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 456789999864 4444333222 26667777776666433332 666664
No 178
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.34 E-value=41 Score=21.37 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=6.6
Q ss_pred cccccccccccC
Q 027422 169 IGCSICLEKFEE 180 (223)
Q Consensus 169 ~~C~ICle~f~~ 180 (223)
..|+-|-+.+..
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1wyh_A 6 SGCSACGETVMP 17 (72)
T ss_dssp CBCSSSCCBCCS
T ss_pred CCCccCCCcccc
Confidence 356666555554
No 179
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=30.22 E-value=24 Score=22.43 Aligned_cols=41 Identities=20% Similarity=0.523 Sum_probs=24.7
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
...|.-|.+.+...+.+... =+..||..|. .|-.|+.++..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 45788888887765543211 3456776664 46666666543
No 180
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.19 E-value=29 Score=25.37 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=27.2
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
...|+-|-+.+.....+.. -+..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 4679999998876543432 466778776 45777877775
No 181
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.00 E-value=22 Score=24.14 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=5.2
Q ss_pred CccccHHHHHH
Q 027422 191 GHCFHSECVDK 201 (223)
Q Consensus 191 gH~FH~~CI~~ 201 (223)
+..||..|..+
T Consensus 62 g~~yC~~~y~~ 72 (91)
T 2d8y_A 62 GRIYCKPHFNQ 72 (91)
T ss_dssp SCCCCHHHHHH
T ss_pred CEEECHHHHHH
Confidence 34455555444
No 182
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.71 E-value=26 Score=23.06 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=23.3
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
....|+-|-+.+.. +.+. .-+..||..|. .|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVK---LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEE---CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEEE---ECcceeCcCcC--------eeCCCCCCCC
Confidence 34678888887765 3332 24567777663 4566665543
No 183
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.69 E-value=21 Score=22.79 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=17.5
Q ss_pred ccCcccccccccccCCCceeecC--CCCccc
Q 027422 166 DNEIGCSICLEKFEEGDSARKLP--SCGHCF 194 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~Lp--~CgH~F 194 (223)
-+-..||+|...++..+..-..+ .|++.|
T Consensus 8 L~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 8 LEILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TTSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred HhheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 35578999998765443333333 466654
No 184
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.22 E-value=31 Score=22.84 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=20.6
Q ss_pred CcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 168 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
...|+-|-+.+. ++.+. .-+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccC
Confidence 456777777666 23232 2455566554 34566665554
No 185
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.74 E-value=43 Score=21.69 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=5.2
Q ss_pred ccccccccccc
Q 027422 169 IGCSICLEKFE 179 (223)
Q Consensus 169 ~~C~ICle~f~ 179 (223)
..|..|...+.
T Consensus 32 F~C~~C~~~L~ 42 (73)
T 1wig_A 32 ALCVRCGQMFA 42 (73)
T ss_dssp SCCSSSCCCCC
T ss_pred CEeCCCCCCCC
Confidence 44555544444
No 186
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.66 E-value=31 Score=22.37 Aligned_cols=41 Identities=20% Similarity=0.468 Sum_probs=20.9
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
....|+-|-+.+...+.+... -+..||..| ..|-.|++++.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCC
Confidence 345677777776643332111 344566554 23555555544
No 187
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.43 E-value=33 Score=21.78 Aligned_cols=10 Identities=20% Similarity=0.796 Sum_probs=4.7
Q ss_pred cccccccccc
Q 027422 169 IGCSICLEKF 178 (223)
Q Consensus 169 ~~C~ICle~f 178 (223)
..|..|...+
T Consensus 32 F~C~~C~~~L 41 (70)
T 2d8z_A 32 FVCTACRKQL 41 (70)
T ss_dssp SBCSSSCCBC
T ss_pred CccCCCCCcC
Confidence 3445554444
No 188
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.99 E-value=32 Score=21.61 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=19.9
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
..|+-|-+.+. ++.+. .-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVN---AMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECC-SCEEC---CTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCcccCCEec-ceEEE---ECccccccCc--------CEECCCCCCCC
Confidence 45777776666 33332 2345566555 33566666554
No 189
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.81 E-value=20 Score=28.78 Aligned_cols=9 Identities=33% Similarity=1.003 Sum_probs=6.8
Q ss_pred CCCcccccc
Q 027422 207 GSCPVCREC 215 (223)
Q Consensus 207 ~sCPvCR~~ 215 (223)
..||+|..+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 479999765
No 190
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.59 E-value=5.5 Score=34.48 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=31.4
Q ss_pred ccCcccccccccccCCCceee---cCCCCccccHHHHHHHhhcCCCCcccccc
Q 027422 166 DNEIGCSICLEKFEEGDSARK---LPSCGHCFHSECVDKWLTRNGSCPVCREC 215 (223)
Q Consensus 166 ~~~~~C~ICle~f~~~~~~~~---Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~ 215 (223)
.....||+|=....... ++. -..=.|.+|..|-..|--....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~-l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGM-IRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEE-EEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeE-EeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 35678999976543321 110 01122567778888898788899999764
No 191
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.37 E-value=18 Score=24.14 Aligned_cols=9 Identities=0% Similarity=-0.348 Sum_probs=4.9
Q ss_pred CCccccccc
Q 027422 208 SCPVCRECV 216 (223)
Q Consensus 208 sCPvCR~~v 216 (223)
.||-|+..+
T Consensus 28 iC~~cg~~Y 36 (69)
T 2pk7_A 28 ISKGAGLAY 36 (69)
T ss_dssp EETTTTEEE
T ss_pred EcCCCCcEe
Confidence 466665544
No 192
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=27.26 E-value=17 Score=19.64 Aligned_cols=8 Identities=50% Similarity=1.576 Sum_probs=4.0
Q ss_pred Cccccccc
Q 027422 209 CPVCRECV 216 (223)
Q Consensus 209 CPvCR~~v 216 (223)
||+|.+.+
T Consensus 9 cpvcqq~m 16 (29)
T 3vhs_A 9 CPVCQQMM 16 (29)
T ss_dssp CTTTCCEE
T ss_pred ChHHHHhC
Confidence 55555443
No 193
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.15 E-value=34 Score=21.94 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 027422 169 IGCSICLEKFEE 180 (223)
Q Consensus 169 ~~C~ICle~f~~ 180 (223)
..|+-|-+.+..
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1x4l_A 6 SGCAGCTNPISG 17 (72)
T ss_dssp CSBTTTTBCCCC
T ss_pred CCCcCCCccccC
Confidence 456666665553
No 194
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.88 E-value=41 Score=23.04 Aligned_cols=45 Identities=13% Similarity=0.397 Sum_probs=30.4
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
..|..|...+....... .=+..||..|..+. ..+.|..|.++|.+
T Consensus 34 F~C~~C~~~L~~~~~~~---~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANETFVA---KDNKILCNKCTTRE--DSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSSCCEE---ETTEEECHHHHTTC--CCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcCeeEC---cCCEEEChhHhhhh--cCCccccCCCcccc
Confidence 67888888875433221 24677888886542 35679999998874
No 195
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.36 E-value=22 Score=28.31 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=23.5
Q ss_pred eeecCCCCccccHHHHHH------Hhh-----cCCCCccccccc
Q 027422 184 ARKLPSCGHCFHSECVDK------WLT-----RNGSCPVCRECV 216 (223)
Q Consensus 184 ~~~Lp~CgH~FH~~CI~~------WL~-----~~~sCPvCR~~v 216 (223)
......|.+.||..|..- -+. ..-.||.|+..-
T Consensus 21 MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 21 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp EEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred eEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 666667999999999742 111 156799998754
No 196
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.16 E-value=52 Score=22.08 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=25.7
Q ss_pred cCcccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
....|.-|-+.+.. ..+. .-+..||.+| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK---ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE---SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEEE---ECCceECccC--------CEecCCCCCCCC
Confidence 45679999888775 3332 2556777776 346777776653
No 197
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=26.05 E-value=45 Score=23.06 Aligned_cols=34 Identities=29% Similarity=0.662 Sum_probs=22.2
Q ss_pred CcccccccccccCCCcee-ecCCCCccccHHHHHHH
Q 027422 168 EIGCSICLEKFEEGDSAR-KLPSCGHCFHSECVDKW 202 (223)
Q Consensus 168 ~~~C~ICle~f~~~~~~~-~Lp~CgH~FH~~CI~~W 202 (223)
...|.||.+. ..+..+. ..++|.-.||..|..+-
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHHC
Confidence 5789999653 1233332 12358889999998864
No 198
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.04 E-value=45 Score=21.18 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=5.3
Q ss_pred ccccccccccC
Q 027422 170 GCSICLEKFEE 180 (223)
Q Consensus 170 ~C~ICle~f~~ 180 (223)
.|+.|-+.+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1x4k_A 7 GCQECKKTIMP 17 (72)
T ss_dssp CBSSSCCCCCS
T ss_pred CCccCCCcccC
Confidence 45555554443
No 199
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.18 E-value=66 Score=21.00 Aligned_cols=39 Identities=23% Similarity=0.647 Sum_probs=20.4
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
..|+.|-+.+..++.+.. .=+..||.+| ..|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccC
Confidence 467777776665443211 1345566554 24555655554
No 200
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=22.34 E-value=72 Score=20.79 Aligned_cols=37 Identities=24% Similarity=0.591 Sum_probs=29.8
Q ss_pred cCcccccccccccCCCceeecCCCCccccHH-HHHHHh
Q 027422 167 NEIGCSICLEKFEEGDSARKLPSCGHCFHSE-CVDKWL 203 (223)
Q Consensus 167 ~~~~C~ICle~f~~~~~~~~Lp~CgH~FH~~-CI~~WL 203 (223)
-...|.-|..++..+.....--..-|.||.. ||..+-
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 3578999999999998876665688999875 888763
No 201
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.90 E-value=16 Score=24.32 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=7.8
Q ss_pred ccCccccccccccc
Q 027422 166 DNEIGCSICLEKFE 179 (223)
Q Consensus 166 ~~~~~C~ICle~f~ 179 (223)
-+-..||+|...+.
T Consensus 8 LeiL~CP~ck~~L~ 21 (67)
T 2jny_A 8 LEVLACPKDKGPLR 21 (67)
T ss_dssp TCCCBCTTTCCBCE
T ss_pred HHHhCCCCCCCcCe
Confidence 34456777765443
No 202
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.55 E-value=77 Score=24.34 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=26.2
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCccccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 218 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 218 (223)
+.|..|...+...... .=+..||..|..+- ..+.|..|+.+|..
T Consensus 88 F~C~~C~~~L~~~~f~----~~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFS----RGESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSCCEE----ETTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred CccCCCCCccCCCcee----ECCEeeecCccccc--cccccccCCCccCC
Confidence 5566676666543321 23566777776553 34668888777754
No 203
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.13 E-value=57 Score=21.10 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=7.2
Q ss_pred cccccccccccC
Q 027422 169 IGCSICLEKFEE 180 (223)
Q Consensus 169 ~~C~ICle~f~~ 180 (223)
..|+.|-+.+..
T Consensus 6 ~~C~~C~~~I~~ 17 (76)
T 1x68_A 6 SGCVACSKPISG 17 (76)
T ss_dssp CCCTTTCCCCCT
T ss_pred CCCccCCCcccC
Confidence 456666666553
No 204
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.94 E-value=1e+02 Score=23.28 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=21.4
Q ss_pred cccccccccccCCCceeecCCCCccccHHHHHHHhhcCCCCcccccccc
Q 027422 169 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 217 (223)
Q Consensus 169 ~~C~ICle~f~~~~~~~~Lp~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 217 (223)
..|..|...+...... .=+..||..|..+-+ ...|..|...|.
T Consensus 34 F~C~~C~~~L~~~~f~----~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 34 LKCSDCHVPLAERCFS----RGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp SBCTTTCCBCCSCCEE----SSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred CccCCCCCcCCCCCcc----cCCeeeecccccccc--cccccccccccC
Confidence 5566666555543211 234556666655432 344555555554
No 205
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.86 E-value=23 Score=25.21 Aligned_cols=11 Identities=18% Similarity=0.646 Sum_probs=6.4
Q ss_pred Ccccccccccc
Q 027422 168 EIGCSICLEKF 178 (223)
Q Consensus 168 ~~~C~ICle~f 178 (223)
...||+|-+++
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 34577775543
Done!