BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027423
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720 OS=Arabidopsis thaliana
GN=At3g49720 PE=1 SV=1
Length = 261
Score = 317 bits (813), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 156/195 (80%), Positives = 174/195 (89%), Gaps = 1/195 (0%)
Query: 1 MSRRPVSSTRRLVDTGSFPFTGALQSKSRSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGD 60
M+RR V STRR+ D GSFPF GAL SKSRSSPLLS+ LVLVGA LLIGYA+SG GIF
Sbjct: 1 MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSI 60
Query: 61 KAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGV 120
K VS++ GD+SCT+E+QRAIP+LKKAYGD M KVLHVGPDTCSVVS+LLKEEETEAWGV
Sbjct: 61 KE-VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGV 119
Query: 121 EPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPD 180
EPYDIEDAD+ CKS V KG+VRVADIKFPLPYRAKSF LVIVSDALDYLSPKYLNKT+P+
Sbjct: 120 EPYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPE 179
Query: 181 LARVASDGVLIFAGI 195
LARVASDGV++FAG+
Sbjct: 180 LARVASDGVVLFAGL 194
>sp|Q49XP0|CVFC_STAS1 Conserved virulence factor C OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=cvfC
PE=3 SV=1
Length = 372
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 17 SFPFTGALQSKSRSSPLLSVGLVLVGAF---LLIGYAFSGSGIFGGDKAAVSRIEGDFSC 73
FP G S+ +PL +VL+G ++ Y F G AV R GD C
Sbjct: 232 DFPLLGDAVSEEEKTPLRREAIVLLGMIEDKAVLPYLFKG---LHDKSPAVRRTAGD--C 286
Query: 74 TSEI--QRAIPILKKAYGDSMHKVLH 97
S++ ++A+P ++KA D HK++
Sbjct: 287 LSDLGFKQALPEMEKALDDP-HKIVR 311
>sp|Q57678|NUCS_METJA Endonuclease NucS OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=nucS PE=3 SV=1
Length = 263
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 56 IFGGDKA------AVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTL 109
I G DK + R D S+++R + K YG+ + + V P + L
Sbjct: 167 ILGKDKENKWVILELKRRRADLQAVSQLKRYVEYFKNKYGEDKVRGILVSPSLTTGAEKL 226
Query: 110 LKEEETEAWGVEP 122
LKEE E + P
Sbjct: 227 LKEENLEFKRLNP 239
>sp|P07067|VG37_BPT2 Long tail fiber protein p37 OS=Enterobacteria phage T2 GN=37 PE=3
SV=1
Length = 1341
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 12 LVDTGSFPFTGALQSKSRSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGDKAAVSRIEGDF 71
+ TG + TG L+ +V G ++ Y +GSG + G A + I D
Sbjct: 62 ITQTGDYTQTGKFN-------LIGPQIVASGGYIEFNYRTTGSGAWSGQHTAKAPIFVDL 114
Query: 72 SCTSEIQRAIPILKKAYGD 90
S + PI+K+ + D
Sbjct: 115 SSATSTSEYNPIIKQRFKD 133
>sp|Q1WUR6|ACCD_LACS1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Lactobacillus salivarius (strain UCC118) GN=accD PE=3
SV=1
Length = 283
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 129 DARCKSLVHKGIVRVADIKFPL----PYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV 184
D++ V GI + D++F L PY + + + L + K LP +
Sbjct: 101 DSKLNDSVLTGIAMIDDVEFALGIMDPYFIMGSMGTVTGEKITRLFERATQKNLPVILFT 160
Query: 185 ASDGVLIFAGISSMFHLMKFSS 206
AS G + GISS+ + K S
Sbjct: 161 ASGGARMQEGISSLMQMSKISQ 182
>sp|Q2HA26|UTP10_CHAGB U3 small nucleolar RNA-associated protein 10 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=UTP10 PE=3 SV=1
Length = 1728
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 30 SSPLLSVGLVLVGAFLLIGYAFSGSGIFG--GDKAAVSRIE---GDFSCT-SEIQRAIPI 83
S P LS L F L Y G F AA+ R++ + C + Q IP
Sbjct: 490 SIPALSRPLATSNPFYLSFYMRVWCGPFPTLAKVAALERVKLRLKESDCADKDFQAIIPY 549
Query: 84 LKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVE 121
A D KV D +V+ +L+KE+ + WG +
Sbjct: 550 CAVALSDPAKKVRRAAADLIAVLGSLVKEQTRQVWGAK 587
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,882,965
Number of Sequences: 539616
Number of extensions: 3345141
Number of successful extensions: 7943
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7936
Number of HSP's gapped (non-prelim): 10
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)