Query 027423
Match_columns 223
No_of_seqs 27 out of 29
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 09:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07021 MetW: Methionine bios 98.6 1.6E-08 3.4E-13 86.5 2.7 96 92-194 14-111 (193)
2 PF08241 Methyltransf_11: Meth 97.4 0.00022 4.7E-09 47.7 3.7 92 96-192 1-95 (95)
3 TIGR03587 Pse_Me-ase pseudamin 97.3 0.00049 1.1E-08 56.8 5.6 98 93-195 45-143 (204)
4 PF13489 Methyltransf_23: Meth 96.8 0.001 2.2E-08 48.8 2.8 93 90-193 21-114 (161)
5 TIGR02081 metW methionine bios 96.2 0.011 2.4E-07 47.1 5.5 93 93-192 15-109 (194)
6 PTZ00098 phosphoethanolamine N 95.9 0.015 3.2E-07 49.5 5.1 122 70-195 31-157 (263)
7 PRK10258 biotin biosynthesis p 95.9 0.013 2.7E-07 48.0 4.6 98 92-195 43-141 (251)
8 TIGR02021 BchM-ChlM magnesium 95.7 0.018 4E-07 46.4 4.8 94 93-194 57-157 (219)
9 PLN02336 phosphoethanolamine N 95.7 0.018 3.8E-07 51.9 5.1 120 93-215 39-172 (475)
10 PRK07580 Mg-protoporphyrin IX 95.5 0.04 8.7E-07 43.7 6.0 108 79-192 51-163 (230)
11 TIGR02072 BioC biotin biosynth 95.3 0.044 9.5E-07 42.8 5.4 101 93-199 36-139 (240)
12 PRK05785 hypothetical protein; 95.1 0.12 2.5E-06 43.3 7.6 99 92-198 52-151 (226)
13 PRK06202 hypothetical protein; 94.9 0.045 9.8E-07 44.6 4.5 101 90-193 59-166 (232)
14 cd02440 AdoMet_MTases S-adenos 94.2 0.086 1.9E-06 33.7 3.8 97 94-193 1-103 (107)
15 PF08242 Methyltransf_12: Meth 94.0 0.032 7E-07 39.2 1.7 90 96-187 1-95 (99)
16 PRK11036 putative S-adenosyl-L 93.8 0.14 3E-06 42.6 5.3 99 89-193 42-148 (255)
17 TIGR00740 methyltransferase, p 93.2 0.4 8.6E-06 39.3 7.0 116 74-194 36-161 (239)
18 PRK00312 pcm protein-L-isoaspa 93.2 0.34 7.3E-06 39.0 6.4 102 92-204 79-186 (212)
19 PRK15451 tRNA cmo(5)U34 methyl 92.4 0.4 8.6E-06 40.1 6.0 121 71-194 36-164 (247)
20 TIGR02752 MenG_heptapren 2-hep 91.4 0.44 9.5E-06 38.3 5.1 104 93-199 47-158 (231)
21 PRK11207 tellurite resistance 91.2 0.55 1.2E-05 38.1 5.5 109 73-192 18-132 (197)
22 PLN02244 tocopherol O-methyltr 90.8 0.61 1.3E-05 41.3 5.8 99 91-194 118-223 (340)
23 PF12847 Methyltransf_18: Meth 90.8 0.2 4.3E-06 35.3 2.2 100 93-193 3-110 (112)
24 smart00828 PKS_MT Methyltransf 90.7 0.42 9.1E-06 38.2 4.3 98 93-195 1-105 (224)
25 PLN02233 ubiquinone biosynthes 90.1 0.8 1.7E-05 39.0 5.7 126 65-193 23-181 (261)
26 PRK08317 hypothetical protein; 90.0 1 2.3E-05 34.9 5.8 99 93-194 21-124 (241)
27 PRK01683 trans-aconitate 2-met 89.9 0.92 2E-05 37.3 5.8 98 90-193 30-129 (258)
28 PLN02585 magnesium protoporphy 89.5 0.69 1.5E-05 41.5 5.1 100 92-197 145-252 (315)
29 TIGR00452 methyltransferase, p 89.3 0.63 1.4E-05 41.8 4.8 97 93-193 123-224 (314)
30 PRK13944 protein-L-isoaspartat 88.4 1.6 3.4E-05 35.6 6.1 92 93-193 74-172 (205)
31 TIGR02469 CbiT precorrin-6Y C5 88.2 1.2 2.6E-05 31.3 4.7 99 92-195 20-123 (124)
32 PRK11088 rrmA 23S rRNA methylt 88.0 3.3 7.1E-05 35.0 7.9 103 82-199 76-185 (272)
33 PRK15068 tRNA mo(5)U34 methylt 87.3 0.91 2E-05 40.3 4.4 97 93-193 124-225 (322)
34 TIGR01934 MenG_MenH_UbiE ubiqu 86.8 1.1 2.4E-05 34.9 4.1 98 93-195 41-144 (223)
35 PRK00216 ubiE ubiquinone/menaq 86.5 1.1 2.5E-05 35.1 4.1 99 93-194 53-158 (239)
36 PRK12335 tellurite resistance 86.4 0.95 2.1E-05 38.8 3.9 109 73-192 108-221 (287)
37 TIGR01983 UbiG ubiquinone bios 86.2 1.9 4.2E-05 34.2 5.3 95 93-194 47-149 (224)
38 PLN02396 hexaprenyldihydroxybe 85.3 1.4 3.1E-05 39.6 4.7 97 93-193 133-234 (322)
39 PF13649 Methyltransf_25: Meth 84.8 0.38 8.3E-06 34.2 0.7 90 95-187 1-99 (101)
40 PLN02490 MPBQ/MSBQ methyltrans 84.6 2 4.4E-05 39.3 5.3 97 93-195 115-216 (340)
41 PF13847 Methyltransf_31: Meth 84.2 1.6 3.5E-05 33.2 3.8 102 90-197 2-112 (152)
42 TIGR00477 tehB tellurite resis 83.7 1.8 3.8E-05 35.1 4.1 108 74-192 19-132 (195)
43 PRK05134 bifunctional 3-demeth 83.3 1.3 2.8E-05 35.7 3.2 101 92-195 49-152 (233)
44 PLN02336 phosphoethanolamine N 82.7 3.2 6.8E-05 37.6 5.7 97 93-194 268-369 (475)
45 PF11899 DUF3419: Protein of u 82.6 0.75 1.6E-05 42.7 1.8 39 154-192 293-332 (380)
46 smart00138 MeTrc Methyltransfe 82.2 3.7 8E-05 35.3 5.7 52 143-195 191-242 (264)
47 PRK13942 protein-L-isoaspartat 80.0 6.4 0.00014 32.5 6.2 96 93-196 78-179 (212)
48 TIGR00417 speE spermidine synt 79.8 2 4.4E-05 36.7 3.3 119 69-193 53-185 (270)
49 smart00650 rADc Ribosomal RNA 76.3 2.7 5.8E-05 32.9 2.8 117 93-215 15-134 (169)
50 PRK00121 trmB tRNA (guanine-N( 73.8 2.9 6.2E-05 34.2 2.5 116 79-194 28-156 (202)
51 PRK11705 cyclopropane fatty ac 73.4 7.8 0.00017 35.4 5.4 107 81-193 156-266 (383)
52 TIGR00406 prmA ribosomal prote 67.5 12 0.00027 32.3 5.2 101 93-199 161-264 (288)
53 PF02562 PhoH: PhoH-like prote 65.5 11 0.00024 32.4 4.4 67 130-203 94-162 (205)
54 TIGR00537 hemK_rel_arch HemK-r 64.7 9.7 0.00021 29.9 3.7 70 93-166 21-92 (179)
55 TIGR00080 pimt protein-L-isoas 64.7 13 0.00028 30.3 4.5 95 93-195 79-179 (215)
56 PF05401 NodS: Nodulation prot 64.5 6 0.00013 34.8 2.7 98 93-196 45-148 (201)
57 TIGR03534 RF_mod_PrmC protein- 64.4 25 0.00055 28.2 6.1 68 93-162 89-160 (251)
58 PRK14103 trans-aconitate 2-met 62.3 17 0.00036 30.3 4.8 93 92-193 30-125 (255)
59 PF01135 PCMT: Protein-L-isoas 60.4 10 0.00022 32.3 3.2 103 93-204 74-183 (209)
60 PRK03612 spermidine synthase; 59.5 16 0.00034 34.7 4.7 99 91-193 297-414 (521)
61 PF01209 Ubie_methyltran: ubiE 57.5 31 0.00067 29.5 5.7 104 93-199 49-160 (233)
62 PRK08287 cobalt-precorrin-6Y C 56.4 17 0.00038 28.7 3.8 93 93-193 33-130 (187)
63 PRK00517 prmA ribosomal protei 56.4 37 0.0008 28.6 5.9 97 91-199 119-218 (250)
64 PF10717 ODV-E18: Occlusion-de 54.8 12 0.00025 29.6 2.5 32 29-60 23-54 (85)
65 COG2226 UbiE Methylase involve 52.8 22 0.00049 31.3 4.2 116 92-211 52-175 (238)
66 PRK11873 arsM arsenite S-adeno 51.0 34 0.00074 28.5 4.9 105 92-199 78-188 (272)
67 PLN02232 ubiquinone biosynthes 50.4 13 0.00027 29.4 2.1 45 141-188 30-74 (160)
68 PF12147 Methyltransf_20: Puta 50.2 11 0.00024 35.4 2.0 126 75-202 121-257 (311)
69 PLN02823 spermine synthase 50.2 29 0.00063 31.7 4.7 112 70-193 85-219 (336)
70 PRK09328 N5-glutamine S-adenos 45.2 23 0.00049 29.2 3.0 68 93-162 110-181 (275)
71 PF13506 Glyco_transf_21: Glyc 43.1 24 0.00051 28.6 2.7 55 155-216 30-84 (175)
72 PF03848 TehB: Tellurite resis 42.7 26 0.00056 30.0 3.0 106 75-193 20-132 (192)
73 PRK00440 rfc replication facto 40.7 8.7 0.00019 31.9 -0.1 47 144-199 3-50 (319)
74 cd06495 p23_NUDCD3_like p23-li 40.2 16 0.00035 28.3 1.3 70 145-214 17-95 (102)
75 PRK10909 rsmD 16S rRNA m(2)G96 38.8 40 0.00087 28.4 3.5 101 93-201 55-165 (199)
76 PRK14967 putative methyltransf 38.7 34 0.00074 28.0 3.0 68 93-162 38-107 (223)
77 PF06040 Adeno_E3: Adenovirus 36.6 33 0.00071 28.9 2.6 44 9-52 59-108 (127)
78 TIGR00438 rrmJ cell division p 36.5 78 0.0017 25.1 4.7 108 75-197 21-149 (188)
79 PRK00811 spermidine synthase; 33.7 84 0.0018 27.4 4.8 119 72-196 60-194 (283)
80 PF08955 BofC_C: BofC C-termin 33.1 21 0.00045 27.3 0.9 16 184-199 15-31 (75)
81 TIGR02085 meth_trns_rumB 23S r 32.3 72 0.0016 28.9 4.3 100 93-199 235-339 (374)
82 PF00326 Peptidase_S9: Prolyl 31.9 34 0.00073 26.9 1.9 50 50-99 21-70 (213)
83 PRK11805 N5-glutamine S-adenos 31.8 97 0.0021 27.5 4.9 68 93-162 135-207 (307)
84 PF02887 PK_C: Pyruvate kinase 30.9 18 0.00038 27.2 0.2 19 116-134 57-75 (117)
85 PF14035 YlzJ: YlzJ-like prote 30.8 18 0.0004 26.3 0.2 14 160-173 46-59 (66)
86 COG0312 TldD Predicted Zn-depe 30.3 16 0.00035 33.5 -0.1 108 81-201 260-380 (454)
87 PRK03522 rumB 23S rRNA methylu 28.7 49 0.0011 29.0 2.5 102 93-204 175-286 (315)
88 PRK13168 rumA 23S rRNA m(5)U19 28.6 53 0.0011 30.2 2.9 99 93-199 299-405 (443)
89 PRK10536 hypothetical protein; 28.2 48 0.001 30.1 2.5 60 137-203 158-219 (262)
90 PRK06922 hypothetical protein; 27.7 68 0.0015 32.9 3.6 99 93-193 420-536 (677)
91 PF02677 DUF208: Uncharacteriz 27.5 29 0.00063 29.9 0.9 41 95-135 2-54 (176)
92 PF03815 LCCL: LCCL domain; I 27.3 31 0.00067 26.3 1.0 41 92-141 18-58 (96)
93 TIGR03438 probable methyltrans 27.3 1.6E+02 0.0034 25.8 5.4 99 93-192 65-175 (301)
94 KOG2621 Prohibitins and stomat 26.7 25 0.00055 32.8 0.5 12 111-122 179-190 (288)
95 KOG0829 60S ribosomal protein 26.5 26 0.00055 30.7 0.4 10 144-153 141-150 (169)
96 PRK04457 spermidine synthase; 25.9 19 0.00042 31.0 -0.4 100 91-193 66-176 (262)
97 PF01978 TrmB: Sugar-specific 25.7 37 0.00079 23.1 1.0 21 127-147 38-58 (68)
98 TIGR00091 tRNA (guanine-N(7)-) 24.2 60 0.0013 26.2 2.2 113 84-197 9-135 (194)
99 TIGR02480 fliN flagellar motor 23.3 42 0.0009 24.2 1.0 26 174-199 37-62 (77)
100 PF10007 DUF2250: Uncharacteri 23.0 54 0.0012 25.5 1.6 36 98-144 19-54 (92)
101 COG3897 Predicted methyltransf 23.0 97 0.0021 28.1 3.3 105 93-203 81-187 (218)
102 PF01630 Glyco_hydro_56: Hyalu 22.9 29 0.00063 32.5 0.1 31 164-194 274-304 (337)
103 PF01558 POR: Pyruvate ferredo 22.8 1E+02 0.0022 24.3 3.1 77 105-195 11-87 (173)
104 TIGR03676 aRF1/eRF1 peptide ch 22.2 46 0.00099 31.3 1.2 40 77-117 5-47 (403)
105 COG2018 Uncharacterized distan 22.1 36 0.00078 28.0 0.5 17 184-200 25-41 (119)
106 PF13624 SurA_N_3: SurA N-term 21.9 70 0.0015 24.3 2.0 59 33-91 11-69 (154)
107 PF10294 Methyltransf_16: Puta 21.7 80 0.0017 25.4 2.4 24 154-183 117-140 (173)
108 PRK12490 6-phosphogluconate de 21.7 81 0.0018 27.3 2.6 33 77-110 142-174 (299)
109 TIGR02716 C20_methyl_CrtF C-20 21.6 2.9E+02 0.0064 23.7 5.9 109 79-194 136-254 (306)
110 PF01102 Glycophorin_A: Glycop 21.6 63 0.0014 26.4 1.8 12 40-51 77-88 (122)
111 PRK12402 replication factor C 20.9 29 0.00063 29.1 -0.3 42 148-198 5-47 (337)
112 cd06438 EpsO_like EpsO protein 20.7 1.2E+02 0.0026 23.1 3.1 29 155-183 80-108 (183)
113 TIGR03533 L3_gln_methyl protei 20.5 2.3E+02 0.0049 24.8 5.1 68 93-162 123-195 (284)
114 PF04016 DUF364: Domain of unk 20.5 55 0.0012 26.3 1.2 29 171-199 71-100 (147)
No 1
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.63 E-value=1.6e-08 Score=86.46 Aligned_cols=96 Identities=24% Similarity=0.412 Sum_probs=85.6
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc-eeeeeecCCCC-CCCCCccEEEeccccccc
Q 027423 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPLP-YRAKSFPLVIVSDALDYL 169 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGi-VRvADIkfpLP-YR~kSFSlVIVSDaLDyL 169 (223)
-.+||++|-........|.++.++++.|||-. +.+..+-|+||+ |--.|+.-.|+ |..+||+.||.|++|..+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid-----~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEID-----PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecC-----HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 37999999999999999999999999999832 345777799999 99999999997 999999999999999998
Q ss_pred ChhhhccccccchhhccCceEEEee
Q 027423 170 SPKYLNKTLPDLARVASDGVLIFAG 194 (223)
Q Consensus 170 spryLNkTLPeLaRvsadglViF~G 194 (223)
++-.+.|-|+.||...++|-|.-
T Consensus 89 --~~P~~vL~EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 89 --RRPDEVLEEMLRVGRRAIVSFPN 111 (193)
T ss_pred --hHHHHHHHHHHHhcCeEEEEecC
Confidence 56778899999999999998763
No 2
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.40 E-value=0.00022 Score=47.68 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=68.0
Q ss_pred eeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc--eeeeeecCCCCCCCCCccEEEecccccccChhh
Q 027423 96 LHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKY 173 (223)
Q Consensus 96 LHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGi--VRvADIkfpLPYR~kSFSlVIVSDaLDyLspry 173 (223)
|-+|-.+......|.+....+.+|+|+..- .-..|+...++.- ++.+|+. .||+..+||.+|+..+++.|+ ..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~--~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~--~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE--MLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHL--ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH--HHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGS--SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHhcccccCchheeehHH-hCccccccccccccccceeec--cC
Confidence 457888888888888888899999998753 4455666555543 7788854 559999999999999999999 78
Q ss_pred hccccccchhhcc-CceEEE
Q 027423 174 LNKTLPDLARVAS-DGVLIF 192 (223)
Q Consensus 174 LNkTLPeLaRvsa-dglViF 192 (223)
..+.+-|+.|+-. +|.++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 8899999999754 444443
No 3
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.30 E-value=0.00049 Score=56.78 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=74.9
Q ss_pred ceeeeecCCcchhhhhcccc-ccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccCh
Q 027423 93 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 171 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyLsp 171 (223)
.+||-||-.|-.....|.+. ...+..|||+-+ ++-..|+....+--+..+|+.- |+..++|++|+...+|.|++|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCH
Confidence 57999999999888888765 467899997753 2333333323334466778765 788999999999999999999
Q ss_pred hhhccccccchhhccCceEEEeec
Q 027423 172 KYLNKTLPDLARVASDGVLIFAGI 195 (223)
Q Consensus 172 ryLNkTLPeLaRvsadglViF~G~ 195 (223)
.++.+.+-++.|++.. .|+++.+
T Consensus 121 ~~~~~~l~el~r~~~~-~v~i~e~ 143 (204)
T TIGR03587 121 DNLPTAYRELYRCSNR-YILIAEY 143 (204)
T ss_pred HHHHHHHHHHHhhcCc-EEEEEEe
Confidence 9999999999999854 5555554
No 4
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.82 E-value=0.001 Score=48.84 Aligned_cols=93 Identities=25% Similarity=0.298 Sum_probs=65.6
Q ss_pred cccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEeccccccc
Q 027423 90 DSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (223)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyL 169 (223)
+.=.+||-+|+.+......| ++...+..|+||.+-.... +-.+......--.+...++|++|+..++|.|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 45669999999999766555 6677799999998533222 11111111111344578899999999999999
Q ss_pred Chhhhccccccchhhcc-CceEEEe
Q 027423 170 SPKYLNKTLPDLARVAS-DGVLIFA 193 (223)
Q Consensus 170 spryLNkTLPeLaRvsa-dglViF~ 193 (223)
. ...+.|-++.|+-. +|.++|+
T Consensus 92 ~--d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 92 P--DPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp S--HHHHHHHHHHHCEEEEEEEEEE
T ss_pred c--cHHHHHHHHHHhcCCCCEEEEE
Confidence 8 47788999988765 5777776
No 5
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.22 E-value=0.011 Score=47.06 Aligned_cols=93 Identities=26% Similarity=0.442 Sum_probs=66.2
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc-eeeeeecCCC-CCCCCCccEEEecccccccC
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPL-PYRAKSFPLVIVSDALDYLS 170 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGi-VRvADIkfpL-PYR~kSFSlVIVSDaLDyLs 170 (223)
.+||.+|..+..+...|.+.....++|||+-+ +.-..|+ ++|+ +..+|+.-.+ |+..++|++|+.+.++.|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~---~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACV---ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHH---HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 37999999999887777666666789998643 1112222 2332 3457776445 47788999999999999984
Q ss_pred hhhhccccccchhhccCceEEE
Q 027423 171 PKYLNKTLPDLARVASDGVLIF 192 (223)
Q Consensus 171 pryLNkTLPeLaRvsadglViF 192 (223)
...+.|-++.|+...+++.|
T Consensus 90 --d~~~~l~e~~r~~~~~ii~~ 109 (194)
T TIGR02081 90 --NPEEILDEMLRVGRHAIVSF 109 (194)
T ss_pred --CHHHHHHHHHHhCCeEEEEc
Confidence 35677889999988766654
No 6
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.91 E-value=0.015 Score=49.50 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=78.8
Q ss_pred CccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhccee--eee
Q 027423 70 DFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVR--VAD 145 (223)
Q Consensus 70 ~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVR--vAD 145 (223)
++-=+.++..+.-+|++.-=+.-.+||.||..+=.....|.+.-..+..||++-+ ++.+..+++. ...|+ .+|
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D 107 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEAND 107 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECC
Confidence 4444444444444454443244568999999886655555443345777777642 3334444332 22333 466
Q ss_pred ecCCCCCCCCCccEEEecccccccChhhhccccccchhh-ccCceEEEeec
Q 027423 146 IKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGVLIFAGI 195 (223)
Q Consensus 146 IkfpLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRv-sadglViF~G~ 195 (223)
+. .+|+...+|++|+..|++-++++.-..+.|-++.|+ ..+|.++++.+
T Consensus 108 ~~-~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 108 IL-KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred cc-cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 63 578888999999999999898776778888888886 66788888754
No 7
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.91 E-value=0.013 Score=48.05 Aligned_cols=98 Identities=20% Similarity=0.258 Sum_probs=66.9
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccCh
Q 027423 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 171 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyLsp 171 (223)
-.+||.+|-.|..+...| .+...+..|+++.+ +.-..|+.....--+..+|+.- +|+...+|++|+.+.++.+..
T Consensus 43 ~~~vLDiGcG~G~~~~~l-~~~~~~v~~~D~s~--~~l~~a~~~~~~~~~~~~d~~~-~~~~~~~fD~V~s~~~l~~~~- 117 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYW-RERGSQVTALDLSP--PMLAQARQKDAADHYLAGDIES-LPLATATFDLAWSNLAVQWCG- 117 (251)
T ss_pred CCeEEEeeCCCCHHHHHH-HHcCCeEEEEECCH--HHHHHHHhhCCCCCEEEcCccc-CcCCCCcEEEEEECchhhhcC-
Confidence 468999999997654444 44456778887643 2222333322222345778743 678788999999999998764
Q ss_pred hhhccccccchhhcc-CceEEEeec
Q 027423 172 KYLNKTLPDLARVAS-DGVLIFAGI 195 (223)
Q Consensus 172 ryLNkTLPeLaRvsa-dglViF~G~ 195 (223)
.+.+.|.++.|+-. +|.++|+.+
T Consensus 118 -d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 118 -NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred -CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 46789999999866 578888743
No 8
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.73 E-value=0.018 Score=46.35 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=68.6
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc-----eeeeeecCCCCCCCCCccEEEeccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIVSDA 165 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGi-----VRvADIkfpLPYR~kSFSlVIVSDa 165 (223)
.+||-+|-.+-.+...|.+. ..+..|||+-+ ++.+..+.+ .++. ..++|+... | ++|++|+.+|.
T Consensus 57 ~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~---~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~ 128 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQ---GRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDV 128 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEECChhhC-C---CCcCEEEEhhH
Confidence 58999999998888777764 45788887642 222333332 2332 456777653 3 89999999999
Q ss_pred ccccChhhhccccccchhhccCceEEEee
Q 027423 166 LDYLSPKYLNKTLPDLARVASDGVLIFAG 194 (223)
Q Consensus 166 LDyLspryLNkTLPeLaRvsadglViF~G 194 (223)
+.|+++..+.+.+=++.|+...++++...
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999888999999999988877666544
No 9
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.71 E-value=0.018 Score=51.86 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=80.0
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhh---hhcceeeeeec-CCCCCCCCCccEEEecccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV---HKGIVRVADIK-FPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLV---rKGiVRvADIk-fpLPYR~kSFSlVIVSDaLDy 168 (223)
.+||-+|..+..+...|.+. ..+..|||+-+- -. ..++.+- .+--+..+|+. ..+|+-..+|++|+.+.++.|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~-~l-~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIES-VI-KKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHH-HH-HHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 48999999999888777765 457888886441 11 1222211 11224456763 345666789999999999999
Q ss_pred cChhhhccccccchhh-ccCceEEEeecCcch--hhc-----cc--cchhHHHHHHH
Q 027423 169 LSPKYLNKTLPDLARV-ASDGVLIFAGISSMF--HLM-----KF--SSDTWTEIHAL 215 (223)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G~P~q~--~L~-----kf--ssswW~r~~~~ 215 (223)
+++.-+.+.|-++.|+ ..+|.++|.-....+ ++. .| +..||.++|.-
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 172 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKE 172 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHH
Confidence 9998888999999996 557777776222111 121 12 56799998864
No 10
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.53 E-value=0.04 Score=43.72 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=69.4
Q ss_pred hhhhHHHHHhcc-ccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc--eeeeeecCCCCCC
Q 027423 79 RAIPILKKAYGD-SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI--VRVADIKFPLPYR 153 (223)
Q Consensus 79 ~aiP~LkkaYGd-sM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGi--VRvADIkfpLPYR 153 (223)
.++..|+. ||. .-.+||-||..+-.....|.+.. .+..|+|+-+ ++.+..+++..-.... ...+|+ +.-
T Consensus 51 ~~~~~l~~-~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~ 124 (230)
T PRK07580 51 TVLSWLPA-DGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL----ESL 124 (230)
T ss_pred HHHHHHHh-cCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc----hhc
Confidence 34455543 222 34689999999988777777654 4577776522 2334443332111011 334553 333
Q ss_pred CCCccEEEecccccccChhhhccccccchhhccCceEEE
Q 027423 154 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIF 192 (223)
Q Consensus 154 ~kSFSlVIVSDaLDyLspryLNkTLPeLaRvsadglViF 192 (223)
..+|++|+.++++.+.+...+.+.+-+|.|+...+++|.
T Consensus 125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 688999999999999888889999999999877665543
No 11
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.30 E-value=0.044 Score=42.76 Aligned_cols=101 Identities=27% Similarity=0.333 Sum_probs=65.0
Q ss_pred ceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhh-cceeeeeecCCCCCCCCCccEEEecccccccC
Q 027423 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrK-GiVRvADIkfpLPYR~kSFSlVIVSDaLDyLs 170 (223)
.+||.+|..+-.....|.+.. .....|+|+-. +.-..++..... -.+-++|+. .+|+-.++|++||.+..+.|+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhcc
Confidence 579999999988777776653 23347777632 222233332221 133456665 4566678999999999999884
Q ss_pred hhhhccccccchhh-ccCceEEEeecCcch
Q 027423 171 PKYLNKTLPDLARV-ASDGVLIFAGISSMF 199 (223)
Q Consensus 171 pryLNkTLPeLaRv-sadglViF~G~P~q~ 199 (223)
. .++.|.++.|+ ..+|.++++. |++.
T Consensus 113 ~--~~~~l~~~~~~L~~~G~l~~~~-~~~~ 139 (240)
T TIGR02072 113 D--LSQALSELARVLKPGGLLAFST-FGPG 139 (240)
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEe-CCcc
Confidence 3 56788888885 4577777763 4443
No 12
>PRK05785 hypothetical protein; Provisional
Probab=95.06 E-value=0.12 Score=43.25 Aligned_cols=99 Identities=22% Similarity=0.221 Sum_probs=68.8
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccCh
Q 027423 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 171 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyLsp 171 (223)
-.+||-||-.|..+...|.+.-+.+..|||+-+ +.=..++ +|.-...+|.. .||+...||++|+.+.+|.++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~---~~~~~~~~d~~-~lp~~d~sfD~v~~~~~l~~~~- 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNL---VADDKVVGSFE-ALPFRDKSFDVVMSSFALHASD- 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHH---hccceEEechh-hCCCCCCCEEEEEecChhhccC-
Confidence 469999999999876666554356888988732 1111111 12223356654 5789999999999999998875
Q ss_pred hhhccccccchhhccCce-EEEeecCcc
Q 027423 172 KYLNKTLPDLARVASDGV-LIFAGISSM 198 (223)
Q Consensus 172 ryLNkTLPeLaRvsadgl-ViF~G~P~q 198 (223)
-+.+.|-|+.||-...+ ++-.+.|..
T Consensus 125 -d~~~~l~e~~RvLkp~~~ile~~~p~~ 151 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQVGFIAMGKPDN 151 (226)
T ss_pred -CHHHHHHHHHHHhcCceEEEEeCCCCc
Confidence 35789999999998865 444466654
No 13
>PRK06202 hypothetical protein; Provisional
Probab=94.85 E-value=0.045 Score=44.61 Aligned_cols=101 Identities=22% Similarity=0.170 Sum_probs=67.1
Q ss_pred cccceeeeecCCcchhhhhccccc-----cccccccccccccchhHHHHhhhh-hc-ceeeeeecCCCCCCCCCccEEEe
Q 027423 90 DSMHKVLHVGPDTCSVVSTLLKEE-----ETEAWGVEPYDIEDADARCKSLVH-KG-IVRVADIKFPLPYRAKSFPLVIV 162 (223)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkEe-----etEAWGVEPydiedad~~CKsLVr-KG-iVRvADIkfpLPYR~kSFSlVIV 162 (223)
+.-.+||-+|-.|-.+...|.+.. ..+..||++.+ ++-..++.... .+ -+++.|.. -+|....+|++|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~-~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTFRQAVSD-ELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeEEEEecc-cccccCCCccEEEE
Confidence 344689999999977655554321 24788888754 23333333322 22 23444332 12335689999999
Q ss_pred cccccccChhhhccccccchhhccCceEEEe
Q 027423 163 SDALDYLSPKYLNKTLPDLARVASDGVLIFA 193 (223)
Q Consensus 163 SDaLDyLspryLNkTLPeLaRvsadglViF~ 193 (223)
+.+|.|+.+..+.+.|-++.|+...+++|..
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~d 166 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALARRLVLHND 166 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcCeeEEEec
Confidence 9999999999999999999999985555443
No 14
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=94.17 E-value=0.086 Score=33.75 Aligned_cols=97 Identities=24% Similarity=0.282 Sum_probs=59.0
Q ss_pred eeeeecCCcchhhhhccccccccccccccccccchhHHHHh-----hhhhcceeeeeecCCCCCCCCCccEEEecccccc
Q 027423 94 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKS-----LVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 94 kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKs-----LVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
+++++|..+-.....+++....+.+|+|+-+. +-..++. ...+--+...|+.-+.+....+|++|+....+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPV--ALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 57899999888777777756778888875321 1112221 1122233445665555446778999999988877
Q ss_pred cChhhhccccccchh-hccCceEEEe
Q 027423 169 LSPKYLNKTLPDLAR-VASDGVLIFA 193 (223)
Q Consensus 169 LspryLNkTLPeLaR-vsadglViF~ 193 (223)
. +....+.+-.+.+ +..+|.++++
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 3344444444333 4567887775
No 15
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=94.02 E-value=0.032 Score=39.16 Aligned_cols=90 Identities=24% Similarity=0.320 Sum_probs=47.1
Q ss_pred eeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhhhhcc--eeeeeecCCCCCCCCCccEEEecccccccC
Q 027423 96 LHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (223)
Q Consensus 96 LHVGPdtC~VVs~LLkE-eetEAWGVEPyd--iedad~~CKsLVrKGi--VRvADIkfpLPYR~kSFSlVIVSDaLDyLs 170 (223)
|-||+.|......|+++ ...+-.|+++.. ++.+..+-+..-.... ++..+.....+.-.++|++|+.+..|.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 57899999999998877 677778887654 5556655555544333 33333333333334799999999999999
Q ss_pred hhhhccccccchhhccC
Q 027423 171 PKYLNKTLPDLARVASD 187 (223)
Q Consensus 171 pryLNkTLPeLaRvsad 187 (223)
+.+...|-.+.++=+.
T Consensus 80 -~~~~~~l~~~~~~L~p 95 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKP 95 (99)
T ss_dssp -S-HHHHHHHHTTT-TS
T ss_pred -hhHHHHHHHHHHHcCC
Confidence 4444555555554433
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.77 E-value=0.14 Score=42.59 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=66.0
Q ss_pred ccccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc-----eeeeeecCCCCCCCCCccEEE
Q 027423 89 GDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVI 161 (223)
Q Consensus 89 GdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGi-----VRvADIkfpLPYR~kSFSlVI 161 (223)
+..-.+||-+|-.+......|.+. ..+..|||+.+ ++-+..+|+. .|+ +..+|+.--.|.-..+|++|+
T Consensus 42 ~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~---~g~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 42 PPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEA---KGVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHh---cCCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 344469999999999877777665 57888998753 3334444443 342 344566432234467999999
Q ss_pred ecccccccChhhhccccccchhhcc-CceEEEe
Q 027423 162 VSDALDYLSPKYLNKTLPDLARVAS-DGVLIFA 193 (223)
Q Consensus 162 VSDaLDyLspryLNkTLPeLaRvsa-dglViF~ 193 (223)
..+.|.|++..- +.|.+++|+-. +|.++++
T Consensus 118 ~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEWVADPK--SVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEE
Confidence 999999996432 56778887654 5665544
No 17
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=93.22 E-value=0.4 Score=39.32 Aligned_cols=116 Identities=19% Similarity=0.295 Sum_probs=77.3
Q ss_pred hHHHHhhhhHHHHHhccccceeeeecCCcchhhhhcccc---ccccccccccccccchhHHHHhhhhh-c-----ceeee
Q 027423 74 TSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE---EETEAWGVEPYDIEDADARCKSLVHK-G-----IVRVA 144 (223)
Q Consensus 74 t~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE---eetEAWGVEPydiedad~~CKsLVrK-G-----iVRvA 144 (223)
-.++...+--|++.+...-.+||.+|-.|=.....|++. ...+..|||+.+ +.-..|+...++ + -+...
T Consensus 36 y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~ 113 (239)
T TIGR00740 36 YSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCN 113 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEEC
Confidence 345555555566777666678999998886666555553 467788888753 333344433322 1 23445
Q ss_pred eecCCCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEEee
Q 027423 145 DIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG 194 (223)
Q Consensus 145 DIkfpLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRvs-adglViF~G 194 (223)
|+. -+|. ++|++|+.+.++.|+++....+.|.++.|+- .+|.++++.
T Consensus 114 d~~-~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 114 DIR-HVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred Chh-hCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 653 2333 3589999999999999888888999999875 577777773
No 18
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.18 E-value=0.34 Score=39.02 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=58.6
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhh-hhcc--e--eeeeecCCCCCCCCCccEEEecccc
Q 027423 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV-HKGI--V--RVADIKFPLPYRAKSFPLVIVSDAL 166 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLV-rKGi--V--RvADIkfpLPYR~kSFSlVIVSDaL 166 (223)
-.+||.||..|-.... +|.+...+..|||.. ++.-..++.-. +-|+ | +..|..-++| ..++|++|++.-+.
T Consensus 79 ~~~VLeiG~GsG~~t~-~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAA-VLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVTAAA 154 (212)
T ss_pred CCEEEEECCCccHHHH-HHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEccCc
Confidence 3589999999877544 333333468888876 33333333222 2243 2 3344332332 13789999998777
Q ss_pred cccChhhhccccccchhhccCceEEEe-ecCcchhhccc
Q 027423 167 DYLSPKYLNKTLPDLARVASDGVLIFA-GISSMFHLMKF 204 (223)
Q Consensus 167 DyLspryLNkTLPeLaRvsadglViF~-G~P~q~~L~kf 204 (223)
.++..+ + +..+...|.+++. +..+++++.+|
T Consensus 155 ~~~~~~-l------~~~L~~gG~lv~~~~~~~~~~~~~~ 186 (212)
T PRK00312 155 PEIPRA-L------LEQLKEGGILVAPVGGEEQQLLTRV 186 (212)
T ss_pred hhhhHH-H------HHhcCCCcEEEEEEcCCCceEEEEE
Confidence 666332 2 2356778888776 54556655555
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=92.39 E-value=0.4 Score=40.08 Aligned_cols=121 Identities=15% Similarity=0.225 Sum_probs=76.8
Q ss_pred ccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccc---ccccccccccccc--ccchhHHHHhhhhhcce--ee
Q 027423 71 FSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLK---EEETEAWGVEPYD--IEDADARCKSLVHKGIV--RV 143 (223)
Q Consensus 71 ~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLk---EeetEAWGVEPyd--iedad~~CKsLVrKGiV--Rv 143 (223)
.-|-.++++.+-.+-+.+-..-.+||.||-.|-.....|++ ....+.+|||+-+ ++-+..+.+..-...-| ..
T Consensus 36 ~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~ 115 (247)
T PRK15451 36 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE 115 (247)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 34555666666555554444446899999998877666654 3567899998743 22233333221111112 34
Q ss_pred eeecCCCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEEee
Q 027423 144 ADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG 194 (223)
Q Consensus 144 ADIkfpLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRvs-adglViF~G 194 (223)
+|+. .+|. ..|++|+.+-++.++.|....+.+.++.|+- .+|.++++.
T Consensus 116 ~d~~-~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 116 GDIR-DIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CChh-hCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4542 2343 3589999999999999988888999999875 467777764
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=91.41 E-value=0.44 Score=38.26 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=66.5
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEeccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALD 167 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFSlVIVSDaLD 167 (223)
.+||-+|-.|......|.+. ...+..|+|+.+ ++-+..+++..-... -+..+|+. .+|+...+|++|+.+..+.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCCCCCCccEEEEecccc
Confidence 58999999999987777664 346789998753 333444444321111 12345652 3566678999999998888
Q ss_pred ccChhhhccccccchhhcc-CceEEEe--ecCcch
Q 027423 168 YLSPKYLNKTLPDLARVAS-DGVLIFA--GISSMF 199 (223)
Q Consensus 168 yLspryLNkTLPeLaRvsa-dglViF~--G~P~q~ 199 (223)
+++. ..+.|-++.|+-. +|.+++. +.|...
T Consensus 126 ~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 158 (231)
T TIGR02752 126 NVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIP 158 (231)
T ss_pred cCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCCh
Confidence 7753 2467778777644 5566653 444443
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=91.24 E-value=0.55 Score=38.06 Aligned_cols=109 Identities=16% Similarity=0.237 Sum_probs=71.2
Q ss_pred chHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc----eeeeeec
Q 027423 73 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI----VRVADIK 147 (223)
Q Consensus 73 Ct~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrK-Gi----VRvADIk 147 (223)
=+.++.+.++.++ -.+||-+|=.+......|.+. ..+..||++.+ ++-..++.+.++ |+ +.++|+.
T Consensus 18 ~~~~l~~~l~~~~------~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~--~~i~~a~~~~~~~~~~~v~~~~~d~~ 88 (197)
T PRK11207 18 THSEVLEAVKVVK------PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNP--MSIANLERIKAAENLDNLHTAVVDLN 88 (197)
T ss_pred ChHHHHHhcccCC------CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCH--HHHHHHHHHHHHcCCCcceEEecChh
Confidence 4556666666442 368999999887766555554 56777876643 344455555443 22 3457774
Q ss_pred CCCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEE
Q 027423 148 FPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIF 192 (223)
Q Consensus 148 fpLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRvs-adglViF 192 (223)
.++. +++|++|+.+.++-|++|..+-+.+-+++|+- .+|.+++
T Consensus 89 -~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 89 -NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -hCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2334 46799999999999999877777777777764 5666443
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=90.75 E-value=0.61 Score=41.26 Aligned_cols=99 Identities=23% Similarity=0.354 Sum_probs=68.1
Q ss_pred ccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc-----eeeeeecCCCCCCCCCccEEEecc
Q 027423 91 SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI-----VRVADIKFPLPYRAKSFPLVIVSD 164 (223)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrK-Gi-----VRvADIkfpLPYR~kSFSlVIVSD 164 (223)
.-.+||-||-.+-.....|.+.-..+.-||++-+- .-..++.+.++ |+ +.++|+ ..+|+...+|++|+..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~--~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV--QAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 44689999999988777676654567778875431 22334444332 32 456776 45788889999999999
Q ss_pred cccccChhhhccccccchhhcc-CceEEEee
Q 027423 165 ALDYLSPKYLNKTLPDLARVAS-DGVLIFAG 194 (223)
Q Consensus 165 aLDyLspryLNkTLPeLaRvsa-dglViF~G 194 (223)
++.++.. ..+.+-|+.|+-. +|.++++.
T Consensus 195 ~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCC--HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999854 3467788888866 56766653
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.75 E-value=0.2 Score=35.26 Aligned_cols=100 Identities=24% Similarity=0.263 Sum_probs=62.8
Q ss_pred ceeeeecCCcchhhhhccc-ccccccccccccc--ccchhHHHHh--hhhhcceeeeeecCCCCCCCCCccEEEecc-cc
Q 027423 93 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD--IEDADARCKS--LVHKGIVRVADIKFPLPYRAKSFPLVIVSD-AL 166 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLk-EeetEAWGVEPyd--iedad~~CKs--LVrKGiVRvADIkfpLPYR~kSFSlVIVSD-aL 166 (223)
.+||.+|-.|=...-.|++ ....+..|||+.+ ++-+..+.+. +-.+=-+..+|+ ...+--...|++|+... .+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCcc
Confidence 4799999999888888888 4788899998843 3345555522 112223566888 44444455599999999 66
Q ss_pred cccCh-hhhccccccch-hhccCceEEEe
Q 027423 167 DYLSP-KYLNKTLPDLA-RVASDGVLIFA 193 (223)
Q Consensus 167 DyLsp-ryLNkTLPeLa-RvsadglViF~ 193 (223)
+.+-+ ...-+.|-.+. ++..+|.++++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 64443 23333344444 34456666654
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=90.75 E-value=0.42 Score=38.21 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=61.9
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhc--ceeeeee-cCCCCCCCCCccEEEecccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADI-KFPLPYRAKSFPLVIVSDAL 166 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLVrKG--iVRvADI-kfpLPYR~kSFSlVIVSDaL 166 (223)
++||.||..+......+.++- ..+..|+++-+ ++.+..+|+..--.+ -+...|+ +. |+ +.+|++|+....+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~-~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PF-PDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CC-CCCCCEeehHHHH
Confidence 479999999988777776653 45677776521 223333333210111 3445666 33 33 4689999999999
Q ss_pred cccChhhhccccccchh-hccCceEEEeec
Q 027423 167 DYLSPKYLNKTLPDLAR-VASDGVLIFAGI 195 (223)
Q Consensus 167 DyLspryLNkTLPeLaR-vsadglViF~G~ 195 (223)
.++.. ....+-++.| +..+|.++++..
T Consensus 78 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIKD--KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCCC--HHHHHHHHHHHcCCCCEEEEEEc
Confidence 88753 3566777776 467888888754
No 25
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=90.06 E-value=0.8 Score=39.01 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=78.7
Q ss_pred ccccCCccchHHHHhhhhHHHHHhcc------------------------ccceeeeecCCcchhhhhcccc--cccccc
Q 027423 65 SRIEGDFSCTSEIQRAIPILKKAYGD------------------------SMHKVLHVGPDTCSVVSTLLKE--EETEAW 118 (223)
Q Consensus 65 s~~eg~~sCt~eV~~aiP~LkkaYGd------------------------sM~kVLHVGPdtC~VVs~LLkE--eetEAW 118 (223)
||-.+-.+|+.+|++...-.-+.|-. .-.+||-+|-.|-.....|.+. ...+.+
T Consensus 23 ~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~ 102 (261)
T PLN02233 23 SRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM 102 (261)
T ss_pred hhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence 34445567888888776655555532 1236888988888754444432 235789
Q ss_pred cccccc--ccchhHHHHhhhhh---cc-eeeeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccC-ceEE
Q 027423 119 GVEPYD--IEDADARCKSLVHK---GI-VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASD-GVLI 191 (223)
Q Consensus 119 GVEPyd--iedad~~CKsLVrK---Gi-VRvADIkfpLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRvsad-glVi 191 (223)
|||+-+ ++-|..+.+..-+. .+ +..+|+ ..||+...||++|+.+.+|.++. ...+.|-|+.|+-.. |.++
T Consensus 103 gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 103 GLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred EEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEE
Confidence 998754 22232221100111 11 345665 35788888999999999998875 357789999998765 5555
Q ss_pred Ee
Q 027423 192 FA 193 (223)
Q Consensus 192 F~ 193 (223)
++
T Consensus 180 i~ 181 (261)
T PLN02233 180 IL 181 (261)
T ss_pred EE
Confidence 54
No 26
>PRK08317 hypothetical protein; Provisional
Probab=89.95 E-value=1 Score=34.87 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=61.5
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
.+||.+|..+-.....+.+. ...+..|+++-+ ++.+..+....-.+--+..+|+. .+|+...+|++|+...++.+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhhc
Confidence 47999999986655555443 245778888743 23333332222222334556663 35667789999999999998
Q ss_pred cChhhhccccccchhh-ccCceEEEee
Q 027423 169 LSPKYLNKTLPDLARV-ASDGVLIFAG 194 (223)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G 194 (223)
+.- ....+.++.|+ ..+|.+++..
T Consensus 100 ~~~--~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 100 LED--PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cCC--HHHHHHHHHHHhcCCcEEEEEe
Confidence 853 34556666664 4566666654
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=89.93 E-value=0.92 Score=37.27 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=64.5
Q ss_pred cccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccc
Q 027423 90 DSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
+.-.+||.+|-.+..+...|.+.- ..+..|||+.+ +.-..++....+--+..+|+.-..| ..+|++|+.+.++.|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhh
Confidence 344689999999998876665442 56889998864 2222333323233356678753222 458999999999999
Q ss_pred cChhhhccccccchhhcc-CceEEEe
Q 027423 169 LSPKYLNKTLPDLARVAS-DGVLIFA 193 (223)
Q Consensus 169 LspryLNkTLPeLaRvsa-dglViF~ 193 (223)
+.. .-+.|.++.|+-. +|.+++.
T Consensus 106 ~~d--~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 106 LPD--HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CCC--HHHHHHHHHHhcCCCcEEEEE
Confidence 853 2356777877744 7777775
No 28
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=89.52 E-value=0.69 Score=41.54 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=65.8
Q ss_pred cceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhh------hcceeeeeecCCCCCCCCCccEEEec
Q 027423 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVH------KGIVRVADIKFPLPYRAKSFPLVIVS 163 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVr------KGiVRvADIkfpLPYR~kSFSlVIVS 163 (223)
-.+||.+|=.|-.+--.|.+. ..+..|++.-+ ++.+..+.+.... +.-..++|+... ..+|++|+..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~ 219 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCL 219 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEEc
Confidence 468999999998877677765 45677776654 3445555544321 112344665432 5789999999
Q ss_pred ccccccChhhhccccccchhhccCceEEEeecCc
Q 027423 164 DALDYLSPKYLNKTLPDLARVASDGVLIFAGISS 197 (223)
Q Consensus 164 DaLDyLspryLNkTLPeLaRvsadglViF~G~P~ 197 (223)
|.|-|+...-+.+-+-.++++.. |.+|++-.|.
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~l~~-g~liIs~~p~ 252 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLASLAE-KRLIISFAPK 252 (315)
T ss_pred CEEEecCHHHHHHHHHHHHhhcC-CEEEEEeCCc
Confidence 99988877666667777777764 4445554454
No 29
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=89.34 E-value=0.63 Score=41.83 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=64.9
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccc--hhHHHHhhhhhcceee--eeecCCCCCCCCCccEEEecccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED--ADARCKSLVHKGIVRV--ADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydied--ad~~CKsLVrKGiVRv--ADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
++||-||-.+-.....++++......||+|.+.-- +....+.+-..+.+.+ .|+. -+|.. .+|++|+...+|.|
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCC-CCcCEEEEcchhhc
Confidence 58999999999888888888766899999987421 2222222112222322 3332 13332 48999999999998
Q ss_pred cChhhhccccccchhh-ccCceEEEe
Q 027423 169 LSPKYLNKTLPDLARV-ASDGVLIFA 193 (223)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~ 193 (223)
+ +.....|-++.|+ ..+|.+|+.
T Consensus 201 ~--~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R--KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c--CCHHHHHHHHHHhcCCCCEEEEE
Confidence 7 3456788899985 456777765
No 30
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.41 E-value=1.6 Score=35.63 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=57.2
Q ss_pred ceeeeecCCcchhh---hhcccccccccccccccc--ccchhHHHHhhhhhc--ceeeeeecCCCCCCCCCccEEEeccc
Q 027423 93 HKVLHVGPDTCSVV---STLLKEEETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIVSDA 165 (223)
Q Consensus 93 ~kVLHVGPdtC~VV---s~LLkEeetEAWGVEPyd--iedad~~CKsLVrKG--iVRvADIkfpLPYR~kSFSlVIVSDa 165 (223)
.+||.+|-.|.... +++++. ..+..|+|..+ ++.+..+.+.+--.+ .+..+|..-.+|- .++|+.|++..+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAA 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccC
Confidence 47999999998755 444432 34788888763 233444443321111 2345677655553 468999999988
Q ss_pred ccccChhhhccccccchhhccCceEEEe
Q 027423 166 LDYLSPKYLNKTLPDLARVASDGVLIFA 193 (223)
Q Consensus 166 LDyLspryLNkTLPeLaRvsadglViF~ 193 (223)
+..+.+..+ ..+..+|.+++.
T Consensus 152 ~~~~~~~l~-------~~L~~gG~lvi~ 172 (205)
T PRK13944 152 ASTIPSALV-------RQLKDGGVLVIP 172 (205)
T ss_pred cchhhHHHH-------HhcCcCcEEEEE
Confidence 877654322 346778888775
No 31
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=88.23 E-value=1.2 Score=31.32 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=56.8
Q ss_pred cceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEeccccc
Q 027423 92 MHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALD 167 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPyd--iedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFSlVIVSDaLD 167 (223)
-.+||-+|..+=.....++++ .+.+.+|+|+-+ ++-+..+++.+- .+=-+...|+...+++=.++|..|+.....+
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 358999999886665566655 247889999743 233444444431 1111223454433444446899998865432
Q ss_pred ccChhhhccccccchhh-ccCceEEEeec
Q 027423 168 YLSPKYLNKTLPDLARV-ASDGVLIFAGI 195 (223)
Q Consensus 168 yLspryLNkTLPeLaRv-sadglViF~G~ 195 (223)
-+.+.+.++.|+ ..+|.++++.+
T Consensus 100 -----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 100 -----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred -----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 223555555554 35677777653
No 32
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=87.98 E-value=3.3 Score=35.03 Aligned_cols=103 Identities=20% Similarity=0.266 Sum_probs=64.1
Q ss_pred hHHHHHhccccceeeeecCCcchhhhhccccc----ccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCC
Q 027423 82 PILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE----ETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAK 155 (223)
Q Consensus 82 P~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe----etEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~k 155 (223)
-.|.+.....-.+||.+|-.|-.....|.+.- ..+..|+++.. ++-|..+. ..--+.++|+. .+|+...
T Consensus 76 ~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~-~lp~~~~ 150 (272)
T PRK11088 76 NLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSH-RLPFADQ 150 (272)
T ss_pred HHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecc-cCCCcCC
Confidence 34444444455679999999998877765432 13568888753 11121111 11125678875 5788889
Q ss_pred CccEEEecccccccChhhhccccccchhhc-cCceEEEeecCcch
Q 027423 156 SFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAGISSMF 199 (223)
Q Consensus 156 SFSlVIVSDaLDyLspryLNkTLPeLaRvs-adglViF~G~P~q~ 199 (223)
||++|+... +|.. +.|+.|+= .+|.+|+. .|++.
T Consensus 151 sfD~I~~~~-----~~~~----~~e~~rvLkpgG~li~~-~p~~~ 185 (272)
T PRK11088 151 SLDAIIRIY-----APCK----AEELARVVKPGGIVITV-TPGPR 185 (272)
T ss_pred ceeEEEEec-----CCCC----HHHHHhhccCCCEEEEE-eCCCc
Confidence 999998654 3543 57899985 46777766 36654
No 33
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=87.29 E-value=0.91 Score=40.29 Aligned_cols=97 Identities=21% Similarity=0.174 Sum_probs=66.5
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhH--HHHhhhhh--cceeeeeecCCCCCCCCCccEEEecccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADA--RCKSLVHK--GIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~--~CKsLVrK--GiVRvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
++||-||-.+-.....+++.....+.||+|....-... ..+..-.. --+..+|+. .+|+ ..+|++|+...+|.|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC-cCCcCEEEECChhhc
Confidence 68999999999888888887766799999887543222 22211111 123334543 4577 889999999999988
Q ss_pred cChhhhccccccchhh-ccCceEEEe
Q 027423 169 LSPKYLNKTLPDLARV-ASDGVLIFA 193 (223)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~ 193 (223)
.. ...+.|-++.|+ ..+|.+||.
T Consensus 202 ~~--dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 RR--SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 64 234567788876 567888876
No 34
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=86.83 E-value=1.1 Score=34.85 Aligned_cols=98 Identities=23% Similarity=0.286 Sum_probs=59.4
Q ss_pred ceeeeecCCcchhhhhcccccc--ccccccccccccchhHHHHhhhh---hcceeeeeecCCCCCCCCCccEEEeccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEE--TEAWGVEPYDIEDADARCKSLVH---KGIVRVADIKFPLPYRAKSFPLVIVSDALD 167 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEee--tEAWGVEPydiedad~~CKsLVr---KGiVRvADIkfpLPYR~kSFSlVIVSDaLD 167 (223)
..||.+|..+-.....+++... .+..|+|+-+ ++-..|+.-.. +--+...|+. .+|+..++|++|+.+..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeC
Confidence 4899999988777666665544 3677776521 22223333221 1234456664 4667788999999988876
Q ss_pred ccChhhhccccccchh-hccCceEEEeec
Q 027423 168 YLSPKYLNKTLPDLAR-VASDGVLIFAGI 195 (223)
Q Consensus 168 yLspryLNkTLPeLaR-vsadglViF~G~ 195 (223)
++.. +-..|-++.+ +..+|.+++.+.
T Consensus 118 ~~~~--~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 118 NVTD--IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred Cccc--HHHHHHHHHHHcCCCcEEEEEEe
Confidence 5532 2234444444 356788887654
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=86.53 E-value=1.1 Score=35.12 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=58.3
Q ss_pred ceeeeecCCcchhhhhccccc--cccccccccc--cccchhHHHHh--hhhhcceeeeeecCCCCCCCCCccEEEecccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPY--DIEDADARCKS--LVHKGIVRVADIKFPLPYRAKSFPLVIVSDAL 166 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe--etEAWGVEPy--diedad~~CKs--LVrKGiVRvADIkfpLPYR~kSFSlVIVSDaL 166 (223)
.+||.+|..+=.....+++.. ..+..|+|+- -++.+..+++. +-..-.+...|+. .+|+...+|++|+.+..+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEeccc
Confidence 579999988744444444433 4677888763 23444444433 1111234445654 355667789999988877
Q ss_pred cccChhhhccccccchh-hccCceEEEee
Q 027423 167 DYLSPKYLNKTLPDLAR-VASDGVLIFAG 194 (223)
Q Consensus 167 DyLspryLNkTLPeLaR-vsadglViF~G 194 (223)
.++.. +.+.|-++.+ +..+|.+++..
T Consensus 132 ~~~~~--~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 RNVPD--IDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCCC--HHHHHHHHHHhccCCcEEEEEE
Confidence 76642 3344445444 45688887764
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.45 E-value=0.95 Score=38.76 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=69.5
Q ss_pred chHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc---eeeeeecC
Q 027423 73 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI---VRVADIKF 148 (223)
Q Consensus 73 Ct~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrK-Gi---VRvADIkf 148 (223)
-..++..+++.++. .+||.+|=.+......|.+. ..+..||+.-. ++-..++...++ |+ +.+.|+.-
T Consensus 108 ~~~~~~~~~~~~~~------~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~--~ai~~~~~~~~~~~l~v~~~~~D~~~ 178 (287)
T PRK12335 108 THSEVLEAVQTVKP------GKALDLGCGQGRNSLYLALL-GFDVTAVDINQ--QSLENLQEIAEKENLNIRTGLYDINS 178 (287)
T ss_pred ccHHHHHHhhccCC------CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEechhc
Confidence 35566666665431 38999999999877666664 35666665431 223334433332 32 34456653
Q ss_pred CCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEE
Q 027423 149 PLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIF 192 (223)
Q Consensus 149 pLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRvs-adglViF 192 (223)
+-. ..+|++|+.+.+|-|+++..+.+-+-++.|+- .+|.+++
T Consensus 179 ~~~--~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 179 ASI--QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ccc--cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 322 67899999999999999877777777777654 5676444
No 37
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=86.22 E-value=1.9 Score=34.18 Aligned_cols=95 Identities=20% Similarity=0.301 Sum_probs=59.2
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc--eee--eeec-CCCCCCCCCccEEEeccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI--VRV--ADIK-FPLPYRAKSFPLVIVSDA 165 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGi--VRv--ADIk-fpLPYR~kSFSlVIVSDa 165 (223)
.+||++|..+-.....+.+. ..+..|+|+-. ++.+..++ .+.++ ++. +|+. ++.+. +.+|.+|+.++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~---~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHA---KKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHH---HHcCCCceEEEeCCHHHhhcCC-CCCccEEEehhH
Confidence 48999999998776666554 34577777632 23333333 23444 443 3432 33333 578999999999
Q ss_pred ccccChhhhccccccchhh-ccCceEEEee
Q 027423 166 LDYLSPKYLNKTLPDLARV-ASDGVLIFAG 194 (223)
Q Consensus 166 LDyLspryLNkTLPeLaRv-sadglViF~G 194 (223)
+.+... ....|.++.++ ..+|.++++.
T Consensus 122 l~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVPD--PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCCC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 988753 34677777665 5567766654
No 38
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=85.30 E-value=1.4 Score=39.62 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=61.9
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhh-hhhc-ceeeeeecCCCCCCCCCccEEEecccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSL-VHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsL-VrKG-iVRvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
.+||-||-.+-.... .|.+...+.+|||+.+ ++-+..+.+.. ..+. -+..+|+. .+|....+|++|+..+.|.+
T Consensus 133 ~~ILDIGCG~G~~s~-~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSE-PLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHH-HHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHHHh
Confidence 379999998887644 4455567899999874 22222221110 0001 13344432 35556789999999999999
Q ss_pred cChhhhccccccchhhc-cCceEEEe
Q 027423 169 LSPKYLNKTLPDLARVA-SDGVLIFA 193 (223)
Q Consensus 169 LspryLNkTLPeLaRvs-adglViF~ 193 (223)
+... ...|.+++|+- .+|.++++
T Consensus 211 v~d~--~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 211 VANP--AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred cCCH--HHHHHHHHHHcCCCcEEEEE
Confidence 9743 57888898875 55666655
No 39
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=84.80 E-value=0.38 Score=34.17 Aligned_cols=90 Identities=28% Similarity=0.358 Sum_probs=58.6
Q ss_pred eeeecCCcchhhhhcccc---c-cccccccccccccchhHHHHhhhh-hc---ceeeeeecCCCCCCCCCccEEEeccc-
Q 027423 95 VLHVGPDTCSVVSTLLKE---E-ETEAWGVEPYDIEDADARCKSLVH-KG---IVRVADIKFPLPYRAKSFPLVIVSDA- 165 (223)
Q Consensus 95 VLHVGPdtC~VVs~LLkE---e-etEAWGVEPydiedad~~CKsLVr-KG---iVRvADIkfpLPYR~kSFSlVIVSDa- 165 (223)
||-+|..+-.+...|++- . +...+||+.-. ++=..|+...+ .| -..++|+.. ||+...+|++|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCc
Confidence 455666666666655543 2 36777775421 23344555553 23 457788866 8888889999999766
Q ss_pred ccccChhhhccccccchhhccC
Q 027423 166 LDYLSPKYLNKTLPDLARVASD 187 (223)
Q Consensus 166 LDyLspryLNkTLPeLaRvsad 187 (223)
++|++|.-+.+-+=+++|+-..
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999998888888877553
No 40
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=84.59 E-value=2 Score=39.27 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=61.3
Q ss_pred ceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEecccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
.+||.||..|=.+...+.+. ...+..|+++-+ ++.+..+-+ .++ -+...|+. .+|+...+|++||.++++.|
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e-~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAE-DLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHH-hCCCCCCceeEEEEcChhhh
Confidence 48999999885544444443 345677877632 122222211 111 13445654 36777889999999999998
Q ss_pred cChhhhccccccchhh-ccCceEEEeec
Q 027423 169 LSPKYLNKTLPDLARV-ASDGVLIFAGI 195 (223)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G~ 195 (223)
+... .++|-++.|+ ..+|.+++++.
T Consensus 191 ~~d~--~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 191 WPDP--QRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCCH--HHHHHHHHHhcCCCcEEEEEEe
Confidence 7643 3678888887 55678777753
No 41
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=84.19 E-value=1.6 Score=33.18 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=69.8
Q ss_pred cccceeeeecCCcchhhhhcccc--ccccccccccccccchhHHHHhhhh-hcc----eeeeeecCCCC--CCCCCccEE
Q 027423 90 DSMHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVH-KGI----VRVADIKFPLP--YRAKSFPLV 160 (223)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPydiedad~~CKsLVr-KGi----VRvADIkfpLP--YR~kSFSlV 160 (223)
++-.+||.+|-.|-...-.|+++ ...+.+||+.-+ ++=..+|...+ .|+ ..++|+.= +| +. ..|++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEE
Confidence 35578999999999999888853 256788887543 23333444332 233 35577766 77 76 999999
Q ss_pred EecccccccChhhhccccccchhhccCceEEEeecCc
Q 027423 161 IVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGISS 197 (223)
Q Consensus 161 IVSDaLDyLspryLNkTLPeLaRvsadglViF~G~P~ 197 (223)
|...++.++... .+.|-.+.|+-.++-+++...+.
T Consensus 78 ~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECC
Confidence 999999777633 46677888888766666665555
No 42
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=83.72 E-value=1.8 Score=35.11 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=70.0
Q ss_pred hHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc---eeeeeecCC
Q 027423 74 TSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI---VRVADIKFP 149 (223)
Q Consensus 74 t~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrK-Gi---VRvADIkfp 149 (223)
..++.++++.++ -.+||-+|-.+.....-|.+. ..+..|+++-+ ++-..++...++ |+ ..++|+.-
T Consensus 19 ~~~l~~~~~~~~------~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~- 88 (195)
T TIGR00477 19 HSAVREAVKTVA------PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDINA- 88 (195)
T ss_pred hHHHHHHhccCC------CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccchh-
Confidence 346667776653 258999999999877666654 45666665542 334444443332 32 33557642
Q ss_pred CCCCCCCccEEEecccccccChhhhccccccchhh-ccCce-EEE
Q 027423 150 LPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGV-LIF 192 (223)
Q Consensus 150 LPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRv-sadgl-ViF 192 (223)
+|+ +++|++|+.+..+-++++..+-+.+-+++|+ ..+|. +|+
T Consensus 89 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 89 AAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 233 3689999999999999887777788888775 55665 444
No 43
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=83.33 E-value=1.3 Score=35.72 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=57.6
Q ss_pred cceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEeccccccc
Q 027423 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyL 169 (223)
-.+||.+|..+=.....+.+. ..+.+|+|+- -++.+..+++......-+...|+.--+.-..+.|.+||.+..+.+.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 457999999875555555543 4568888762 2223333332221111233344432222345789999999999987
Q ss_pred Chhhhccccccchhh-ccCceEEEeec
Q 027423 170 SPKYLNKTLPDLARV-ASDGVLIFAGI 195 (223)
Q Consensus 170 spryLNkTLPeLaRv-sadglViF~G~ 195 (223)
.. ....|-.+.|+ ..+|.++|+..
T Consensus 128 ~~--~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 128 PD--PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred CC--HHHHHHHHHHHcCCCcEEEEEec
Confidence 42 23444455544 45777777643
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.75 E-value=3.2 Score=37.62 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=63.6
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhh----hcceeeeeecCCCCCCCCCccEEEecccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH----KGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVr----KGiVRvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
.+||-||-.+-...-.|.++-..+..||++.+ ++-..++.-.. +--+..+|+. -+|+...+|++|+..+++.|
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIGRKCSVEFEVADCT-KKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhcCCCceEEEEcCcc-cCCCCCCCEEEEEECCcccc
Confidence 48999999987665556655566889998863 22223322211 1124456754 35666789999999999999
Q ss_pred cChhhhccccccchhhc-cCceEEEee
Q 027423 169 LSPKYLNKTLPDLARVA-SDGVLIFAG 194 (223)
Q Consensus 169 LspryLNkTLPeLaRvs-adglViF~G 194 (223)
+..+ -+.|.++.|+= .+|.++++-
T Consensus 345 ~~d~--~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 345 IQDK--PALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cCCH--HHHHHHHHHHcCCCeEEEEEE
Confidence 8532 25677888864 566666653
No 45
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.61 E-value=0.75 Score=42.68 Aligned_cols=39 Identities=33% Similarity=0.639 Sum_probs=34.9
Q ss_pred CCCccEEEecccccccChhhhccccccchhhccCc-eEEE
Q 027423 154 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG-VLIF 192 (223)
Q Consensus 154 ~kSFSlVIVSDaLDyLspryLNkTLPeLaRvsadg-lViF 192 (223)
+.||+.+|.+|+.|||+|..+|+..-+|.|+.+.| -|++
T Consensus 293 ~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 68999999999999999999999999999998765 4554
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=82.16 E-value=3.7 Score=35.33 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=41.5
Q ss_pred eeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccCceEEEeec
Q 027423 143 VADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGI 195 (223)
Q Consensus 143 vADIkfpLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G~ 195 (223)
++|+-- +|+...+|++|+..+.|-|+++....+.+.+++|+=..|=+++.|.
T Consensus 191 ~~dl~~-~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 191 KHNLLA-ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred eccCCC-CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 345433 3445678999999999999999999999999999888776666664
No 47
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=80.02 E-value=6.4 Score=32.49 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=58.0
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEeccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALD 167 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFSlVIVSDaLD 167 (223)
++||.||..|.+....|.+. .+.+..|||+.+ ++-+..+++.+- .+=-+..+|..-.+| -...|+.|+++-+..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-ENAPYDRIYVTAAGP 156 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-cCCCcCEEEECCCcc
Confidence 58999999998876544433 346889999863 233445554331 111244456543332 236799999987765
Q ss_pred ccChhhhccccccchhhccCceEEEe-ecC
Q 027423 168 YLSPKYLNKTLPDLARVASDGVLIFA-GIS 196 (223)
Q Consensus 168 yLspryLNkTLPeLaRvsadglViF~-G~P 196 (223)
.+.+.++ ..+..+|.+++. |..
T Consensus 157 ~~~~~l~-------~~LkpgG~lvi~~~~~ 179 (212)
T PRK13942 157 DIPKPLI-------EQLKDGGIMVIPVGSY 179 (212)
T ss_pred cchHHHH-------HhhCCCcEEEEEEcCC
Confidence 5544332 256788887665 543
No 48
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=79.83 E-value=2 Score=36.67 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=61.2
Q ss_pred CCccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhh--c-----c
Q 027423 69 GDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK--G-----I 140 (223)
Q Consensus 69 g~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrK--G-----i 140 (223)
.+..+--|.+-.+|.+... .-++||.+|..+..+...+++.. ..+.-+||.-+ ++-..|+....+ | -
T Consensus 53 ~~e~~y~e~l~~~~l~~~~---~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~~~~~~~~~~~ 127 (270)
T TIGR00417 53 RDEFIYHEMIAHVPLFTHP---NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLPSLAGSYDDPR 127 (270)
T ss_pred chHHHHHHHhhhhHhhcCC---CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhHhhcccccCCc
Confidence 3444455666666666532 23499999999999888888764 22333443310 122333332211 1 0
Q ss_pred --eeeeeecCCCCCCCCCccEEEecccccccChh---hhccccccc-hhhccCceEEEe
Q 027423 141 --VRVADIKFPLPYRAKSFPLVIVSDALDYLSPK---YLNKTLPDL-ARVASDGVLIFA 193 (223)
Q Consensus 141 --VRvADIkfpLPYR~kSFSlVIVSDaLDyLspr---yLNkTLPeL-aRvsadglViF~ 193 (223)
+.++|-.--+....+.|++||+ |.-+...|. |-...+-.+ .++..+|++++.
T Consensus 128 v~i~~~D~~~~l~~~~~~yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 128 VDLQIDDGFKFLADTENTFDVIIV-DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eEEEECchHHHHHhCCCCccEEEE-eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 2223421112223578998765 665443332 111112222 457889998886
No 49
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=76.27 E-value=2.7 Score=32.93 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=66.1
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeee-cCCCCCCCCCccEEEeccccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADI-KFPLPYRAKSFPLVIVSDALDYL 169 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVRvADI-kfpLPYR~kSFSlVIVSDaLDyL 169 (223)
.+||-+||.+..+...|++. ..+.+|||.-+ ++.+..++... .+=-+..+|+ ++++| ..+|..| +||.-=++
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~--~~~~d~v-i~n~Py~~ 89 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFDLP--KLQPYKV-VGNLPYNI 89 (169)
T ss_pred CEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCCcc--ccCCCEE-EECCCccc
Confidence 47999999999998888887 57888888762 22233333220 1112344554 33433 3457655 67766666
Q ss_pred ChhhhccccccchhhccCceEEEeecCcchhhccccchhHHHHHHH
Q 027423 170 SPKYLNKTLPDLARVASDGVLIFAGISSMFHLMKFSSDTWTEIHAL 215 (223)
Q Consensus 170 spryLNkTLPeLaRvsadglViF~G~P~q~~L~kfssswW~r~~~~ 215 (223)
+..-+.+.+-+.. .-.+|+++|-=...++-+.+..+..+.++-.+
T Consensus 90 ~~~~i~~~l~~~~-~~~~~~l~~q~e~a~rl~~~~~~~~y~~lsv~ 134 (169)
T smart00650 90 STPILFKLLEEPP-AFRDAVLMVQKEVARRLAAKPGSKDYGRLSVL 134 (169)
T ss_pred HHHHHHHHHhcCC-CcceEEEEEEHHHhHHhcCCCCCCcccHHHHH
Confidence 6677777665433 23667776643333333444444444444443
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=73.83 E-value=2.9 Score=34.16 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=72.4
Q ss_pred hhhhHHHHHhccccceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhh-hhcceeeeee-c-CCCCC
Q 027423 79 RAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADI-K-FPLPY 152 (223)
Q Consensus 79 ~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPyd--iedad~~CKsLV-rKGiVRvADI-k-fpLPY 152 (223)
...+-..+.+++.-.+||-+|..|-.....|.+. ...+.+|||+.+ ++.+..+++..- ..--+..+|+ . ++..+
T Consensus 28 ~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~ 107 (202)
T PRK00121 28 PAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF 107 (202)
T ss_pred CCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc
Confidence 4445567888888899999999999888777654 356899999876 555666665431 1112456777 2 33226
Q ss_pred CCCCccEEEecccccccC-hhhh-----ccccccchhh-ccCceEEEee
Q 027423 153 RAKSFPLVIVSDALDYLS-PKYL-----NKTLPDLARV-ASDGVLIFAG 194 (223)
Q Consensus 153 R~kSFSlVIVSDaLDyLs-pryL-----NkTLPeLaRv-sadglViF~G 194 (223)
...+|++|+..-...+.. +.+. ...|-++.|+ ..+|.++++-
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 678999998643222211 1222 2245565654 4578777763
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=73.38 E-value=7.8 Score=35.44 Aligned_cols=107 Identities=17% Similarity=0.257 Sum_probs=68.5
Q ss_pred hhHHHHHhc-cccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCc
Q 027423 81 IPILKKAYG-DSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSF 157 (223)
Q Consensus 81 iP~LkkaYG-dsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~kSF 157 (223)
+..+.+..+ +.=.+||-||-.+......+.+.-..+.-||+..+ ++-+..+|+.+ .--+...|..- + ..+|
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~~-l---~~~f 229 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL--PVEIRLQDYRD-L---NGQF 229 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC--eEEEEECchhh-c---CCCC
Confidence 444433333 34468999999888887777765556777776532 33344444321 00123344321 1 4789
Q ss_pred cEEEecccccccChhhhccccccchhhcc-CceEEEe
Q 027423 158 PLVIVSDALDYLSPKYLNKTLPDLARVAS-DGVLIFA 193 (223)
Q Consensus 158 SlVIVSDaLDyLspryLNkTLPeLaRvsa-dglViF~ 193 (223)
+.|+...+++++.++.+...+.++.|+=. +|.+++.
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999988888888888888754 5666664
No 52
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=67.47 E-value=12 Score=32.28 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=56.7
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccC
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyLs 170 (223)
.+||-+|-.|-...-.+.+-......||+.-+ ++-+..|++.---...+.+..-. .++.-..+|++|+. +.+
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~-~~~~~~~~fDlVva-n~~---- 234 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY-LEQPIEGKADVIVA-NIL---- 234 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc-cccccCCCceEEEE-ecC----
Confidence 68999999996555455554444667776443 34455554421111122221111 23333568999875 443
Q ss_pred hhhhccccccchhh-ccCceEEEeecCcch
Q 027423 171 PKYLNKTLPDLARV-ASDGVLIFAGISSMF 199 (223)
Q Consensus 171 pryLNkTLPeLaRv-sadglViF~G~P~q~ 199 (223)
..-+.+.++++.|+ ..+|.+|++|.-..+
T Consensus 235 ~~~l~~ll~~~~~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 235 AEVIKELYPQFSRLVKPGGWLILSGILETQ 264 (288)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence 22334567777665 567899999875444
No 53
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=65.54 E-value=11 Score=32.44 Aligned_cols=67 Identities=25% Similarity=0.524 Sum_probs=40.7
Q ss_pred HHHHhhhhhcceeeeeecCCCCCCCCCc--cEEEecccccccChhhhccccccchhhccCceEEEeecCcchhhcc
Q 027423 130 ARCKSLVHKGIVRVADIKFPLPYRAKSF--PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGISSMFHLMK 203 (223)
Q Consensus 130 ~~CKsLVrKGiVRvADIkfpLPYR~kSF--SlVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G~P~q~~L~k 203 (223)
..=+.++.+|.+.+.++.| .|=.+| ++|||=+| .-+||..+=.- |.|+..+.=+||+|.|.|+++..
T Consensus 94 ~~~~~~~~~~~Ie~~~~~~---iRGrt~~~~~iIvDEa-QN~t~~~~k~i---lTR~g~~skii~~GD~~Q~D~~~ 162 (205)
T PF02562_consen 94 EKLEELIQNGKIEIEPLAF---IRGRTFDNAFIIVDEA-QNLTPEELKMI---LTRIGEGSKIIITGDPSQIDLPL 162 (205)
T ss_dssp TCHHHHHHTTSEEEEEGGG---GTT--B-SEEEEE-SG-GG--HHHHHHH---HTTB-TT-EEEEEE---------
T ss_pred HhHHHHhhcCeEEEEehhh---hcCccccceEEEEecc-cCCCHHHHHHH---HcccCCCcEEEEecCceeecCCC
Confidence 3456788999999999888 588888 67777555 56788877554 78999999999999999997664
No 54
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=64.73 E-value=9.7 Score=29.89 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=43.6
Q ss_pred ceeeeecCCcchhhhhcccccccccccccc--ccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEP--YDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDAL 166 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEP--ydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaL 166 (223)
.+||-+|..+......+.+... +..|+|. --++-+..|++..-..--+..+|+-- .+ .++|++|+.....
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK-GV--RGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc-cc--CCcccEEEECCCC
Confidence 5799999999988777776654 7888874 33445666665432222223355422 22 3589999876443
No 55
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=64.70 E-value=13 Score=30.33 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=55.6
Q ss_pred ceeeeecCCcchhhhhccccc--ccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEeccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALD 167 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe--etEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFSlVIVSDaLD 167 (223)
.+||-+|..|=.....|.+.. +...+|||..+ ++.+..+++.+--+. .+..+|..-.++ ....|++|+++.+..
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-PLAPYDRIYVTAAGP 157 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-ccCCCCEEEEcCCcc
Confidence 589999998877665555432 34589998653 334555554431111 234456543222 235899999876655
Q ss_pred ccChhhhccccccchhhccCceEEEe-ec
Q 027423 168 YLSPKYLNKTLPDLARVASDGVLIFA-GI 195 (223)
Q Consensus 168 yLspryLNkTLPeLaRvsadglViF~-G~ 195 (223)
.+.+. + ...+..+|.+|+. |.
T Consensus 158 ~~~~~-~------~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 158 KIPEA-L------IDQLKEGGILVMPVGE 179 (215)
T ss_pred cccHH-H------HHhcCcCcEEEEEEcC
Confidence 44322 1 2356778887776 44
No 56
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=64.46 E-value=6 Score=34.78 Aligned_cols=98 Identities=27% Similarity=0.373 Sum_probs=57.2
Q ss_pred ceeeeecCCcchhhhhccccccccccccc--cccccchhHHHHhhhhhcce--eeeeecCCCCCCCCCccEEEecccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVE--Pydiedad~~CKsLVrKGiV--RvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
.++|-+|= .+++.+..|-.--.+.-.++ |=-++-|...|+.+ .-| +++|+.-. +=+..|.||++|..+-|
T Consensus 45 ~~alEvGC-s~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~--~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 45 RRALEVGC-SIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF--WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEE---TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----SS-EEEEEEES-GGG
T ss_pred ceeEecCC-CccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC--CCCCCeeEEEEehHhHc
Confidence 45788874 33455555544433433333 33455566666654 335 45566444 44789999999999999
Q ss_pred cCh-hhhccccccchh-hccCceEEEeecC
Q 027423 169 LSP-KYLNKTLPDLAR-VASDGVLIFAGIS 196 (223)
Q Consensus 169 Lsp-ryLNkTLPeLaR-vsadglViF~G~P 196 (223)
|++ .-|.+.+-.++. +..+|.+||.-..
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 997 467777666654 8899999997543
No 57
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=64.41 E-value=25 Score=28.19 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=41.4
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEe
Q 027423 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIV 162 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFSlVIV 162 (223)
.+||-+|..+......+.+.- ..+..|+|.-. ++-+..+++..- ..=-+..+|+.-++ ...+|++||.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~Vi~ 160 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL--PGGKFDLIVS 160 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC--cCCceeEEEE
Confidence 589999999999888887653 45778888543 333333333210 01124455664344 3578999875
No 58
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=62.33 E-value=17 Score=30.26 Aligned_cols=93 Identities=13% Similarity=0.201 Sum_probs=61.7
Q ss_pred cceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhhcc-eeeeeecCCCCCCCCCccEEEeccccccc
Q 027423 92 MHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrKGi-VRvADIkfpLPYR~kSFSlVIVSDaLDyL 169 (223)
-.+||-+|-.|..+...|.+.- ..+..|+|+-+ +.-..++. +++ ++.+|+. .++ ...+|++|+.+.++.|+
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~~---~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAARE---RGVDARTGDVR-DWK-PKPDTDVVVSNAALQWV 102 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHh---cCCcEEEcChh-hCC-CCCCceEEEEehhhhhC
Confidence 3789999999988766665442 45788998853 12122221 232 4567774 333 24689999999999998
Q ss_pred Chhhhccccccchhh-ccCceEEEe
Q 027423 170 SPKYLNKTLPDLARV-ASDGVLIFA 193 (223)
Q Consensus 170 spryLNkTLPeLaRv-sadglViF~ 193 (223)
.. ..+.|.++.|+ ..+|.++++
T Consensus 103 ~d--~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 PE--HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CC--HHHHHHHHHHhCCCCcEEEEE
Confidence 53 35677787775 567777776
No 59
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=60.40 E-value=10 Score=32.28 Aligned_cols=103 Identities=22% Similarity=0.269 Sum_probs=65.5
Q ss_pred ceeeeecCCcc---hhhhhcccccccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEecccc
Q 027423 93 HKVLHVGPDTC---SVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDAL 166 (223)
Q Consensus 93 ~kVLHVGPdtC---~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFSlVIVSDaL 166 (223)
++||+||..|- .++++|.... ...-+||.++ .+-|..+++.+-... .+.++|....+|=.+ .|+.||++=+.
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~-g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a-pfD~I~v~~a~ 151 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPV-GRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA-PFDRIIVTAAV 151 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTT-EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG--SEEEEEESSBB
T ss_pred CEEEEecCCCcHHHHHHHHhcCcc-ceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC-CcCEEEEeecc
Confidence 48999998764 4667776433 3566888776 345666766664444 368889988887655 69999999999
Q ss_pred cccChhhhccccccchhhccCceEEEe-ecCcchhhccc
Q 027423 167 DYLSPKYLNKTLPDLARVASDGVLIFA-GISSMFHLMKF 204 (223)
Q Consensus 167 DyLspryLNkTLPeLaRvsadglViF~-G~P~q~~L~kf 204 (223)
+-+.+.++. .+..+|.+|+. +..+.|.+-.+
T Consensus 152 ~~ip~~l~~-------qL~~gGrLV~pi~~~~~~~l~~~ 183 (209)
T PF01135_consen 152 PEIPEALLE-------QLKPGGRLVAPIGQGGSQRLVRI 183 (209)
T ss_dssp SS--HHHHH-------TEEEEEEEEEEESSSSSEEEEEE
T ss_pred chHHHHHHH-------hcCCCcEEEEEEccCCceEEEEE
Confidence 877665543 34667877775 54444444333
No 60
>PRK03612 spermidine synthase; Provisional
Probab=59.46 E-value=16 Score=34.74 Aligned_cols=99 Identities=24% Similarity=0.215 Sum_probs=57.6
Q ss_pred ccceeeeecCCcchhhhhcccccc-ccccccccccccchhHHHHh-----------hhh-hcceeeeeecCCCCCCCCCc
Q 027423 91 SMHKVLHVGPDTCSVVSTLLKEEE-TEAWGVEPYDIEDADARCKS-----------LVH-KGIVRVADIKFPLPYRAKSF 157 (223)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkEee-tEAWGVEPydiedad~~CKs-----------LVr-KGiVRvADIkfpLPYR~kSF 157 (223)
.-++||.+|..+..+...++|... .+...||.-+ ++-..||. +-. +=-+..+|..--+.-.+++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 457899999999999999998755 6777777421 12222222 100 11245567654455556799
Q ss_pred cEEEecccccccChhhhcc-----cccc-chhhccCceEEEe
Q 027423 158 PLVIVSDALDYLSPKYLNK-----TLPD-LARVASDGVLIFA 193 (223)
Q Consensus 158 SlVIVSDaLDyLspryLNk-----TLPe-LaRvsadglViF~ 193 (223)
++||+ |.-|--.|. .++ -+.. ..++..+|++++.
T Consensus 375 DvIi~-D~~~~~~~~-~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 375 DVIIV-DLPDPSNPA-LGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CEEEE-eCCCCCCcc-hhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99876 544322221 111 1112 2467788998875
No 61
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=57.47 E-value=31 Score=29.54 Aligned_cols=104 Identities=24% Similarity=0.253 Sum_probs=59.0
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhhhhcc-eeeeeecCCCCCCCCCccEEEeccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI-VRVADIKFPLPYRAKSFPLVIVSDALD 167 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLVrKGi-VRvADIkfpLPYR~kSFSlVIVSDaLD 167 (223)
.+||-||-.|=.+...|.+. ...+.=|+++-+ ++-+..+++..-..-+ .-.+|. .-||++..||+.|..+=.|.
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHH
Confidence 49999999888776667664 345777776543 3445555554332222 122443 35889999999999999998
Q ss_pred ccChhhhccccccchhhccC-ceEEEe--ecCcch
Q 027423 168 YLSPKYLNKTLPDLARVASD-GVLIFA--GISSMF 199 (223)
Q Consensus 168 yLspryLNkTLPeLaRvsad-glViF~--G~P~q~ 199 (223)
.+.. ..+.|-|+.||=.. |.+++. +.|.+-
T Consensus 128 n~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 128 NFPD--RERALREMYRVLKPGGRLVILEFSKPRNP 160 (233)
T ss_dssp G-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred hhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCc
Confidence 8764 67899999999754 444333 666543
No 62
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=56.38 E-value=17 Score=28.67 Aligned_cols=93 Identities=11% Similarity=0.079 Sum_probs=53.8
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEecccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
.+||-+|..|-.+...+.+.. ..+..|+|+-. ++-+..+++..--.. -+..+|...++ ..+|++|+......+
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~---~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL---PGKADAIFIGGSGGN 109 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc---CcCCCEEEECCCccC
Confidence 479999999987766666543 35778888753 344554444321111 12234554333 368999987654443
Q ss_pred cChhhhccccccchh-hccCceEEEe
Q 027423 169 LSPKYLNKTLPDLAR-VASDGVLIFA 193 (223)
Q Consensus 169 LspryLNkTLPeLaR-vsadglViF~ 193 (223)
+...+.+..| +..+|.+++.
T Consensus 110 -----~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 110 -----LTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred -----HHHHHHHHHHhcCCCeEEEEE
Confidence 3334444433 4567877765
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=56.38 E-value=37 Score=28.57 Aligned_cols=97 Identities=24% Similarity=0.302 Sum_probs=52.8
Q ss_pred ccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccc
Q 027423 91 SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (223)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDy 168 (223)
.=.+||-+|-.|-...-.+.+....+..|++.-+ ++-+..|+ -+.|+ . ..+. ++....+|++|+. +.+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~---~~~~~-~-~~~~--~~~~~~~fD~Vva-ni~-- 188 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA---ELNGV-E-LNVY--LPQGDLKADVIVA-NIL-- 188 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH---HHcCC-C-ceEE--EccCCCCcCEEEE-cCc--
Confidence 3468999999995443334444444577776532 23333333 23343 1 1122 2222237998864 332
Q ss_pred cChhhhccccccchhh-ccCceEEEeecCcch
Q 027423 169 LSPKYLNKTLPDLARV-ASDGVLIFAGISSMF 199 (223)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G~P~q~ 199 (223)
..-+-+.+|++.|+ ..+|.+|++|.-..+
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~~~ 218 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILEEQ 218 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcHhh
Confidence 22234557777665 457999999865443
No 64
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=54.81 E-value=12 Score=29.64 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=25.6
Q ss_pred CCCCchhhhHHHHHHHhhhhhhccCCCccCcc
Q 027423 29 RSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGD 60 (223)
Q Consensus 29 rsspllsi~lv~vgailli~Y~ysgsg~~~~~ 60 (223)
..+-+++|.+++|-.||||..+.++|++-.+.
T Consensus 23 ~pn~lMtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 23 NPNTLMTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34568889999999999999999999875543
No 65
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=52.77 E-value=22 Score=31.34 Aligned_cols=116 Identities=25% Similarity=0.217 Sum_probs=80.8
Q ss_pred cceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhccee--eeeecCCCCCCCCCccEEEecccc
Q 027423 92 MHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKGIVR--VADIKFPLPYRAKSFPLVIVSDAL 166 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLVrKGiVR--vADIkfpLPYR~kSFSlVIVSDaL 166 (223)
=.+||-||=.|=-+--++-|+- ..+.+|+.+-+ ++-+-.+|+.+=-++ |+ +||. .-|||.-+||++|.+|=.|
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA-e~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA-ENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech-hhCCCCCCccCEEEeeehh
Confidence 3689999888866555444433 36778876543 555666666543333 33 5554 3699999999999999999
Q ss_pred cccChhhhccccccchhhccCce---EEEeecCcchhhccccchhHHH
Q 027423 167 DYLSPKYLNKTLPDLARVASDGV---LIFAGISSMFHLMKFSSDTWTE 211 (223)
Q Consensus 167 DyLspryLNkTLPeLaRvsadgl---ViF~G~P~q~~L~kfssswW~r 211 (223)
..++ ..+|-|-|+.||---|- |+-.+.|....+.++...|+-+
T Consensus 130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~ 175 (238)
T COG2226 130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFK 175 (238)
T ss_pred hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHH
Confidence 9998 78999999999987654 4445777665555555555444
No 66
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=51.00 E-value=34 Score=28.53 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=58.8
Q ss_pred cceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEecccc
Q 027423 92 MHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDAL 166 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFSlVIVSDaL 166 (223)
-.+||-+|..+-...-.+.+. ...+..||++-+ ++-+..+.+.+- .+-.++.+|+. .+|+-..+|.+||..-++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~-~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE-ALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh-hCCCCCCceeEEEEcCcc
Confidence 459999999984322222222 234677877632 333433322211 11123446764 466666799999877666
Q ss_pred cccChhhhccccccchhh-ccCceEEEeecCcch
Q 027423 167 DYLSPKYLNKTLPDLARV-ASDGVLIFAGISSMF 199 (223)
Q Consensus 167 DyLspryLNkTLPeLaRv-sadglViF~G~P~q~ 199 (223)
.+.. . .-+.+.++.|+ ..+|.+++++.....
T Consensus 157 ~~~~-d-~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 157 NLSP-D-KERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred cCCC-C-HHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 5442 1 23456666665 457888887765443
No 67
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=50.44 E-value=13 Score=29.39 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=37.4
Q ss_pred eeeeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccCc
Q 027423 141 VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG 188 (223)
Q Consensus 141 VRvADIkfpLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRvsadg 188 (223)
+.++|+. .||+-..+|++|+.+..+-++. -..+.|-|+.||-..|
T Consensus 30 ~~~~d~~-~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 30 WIEGDAI-DLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPG 74 (160)
T ss_pred EEEechh-hCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcC
Confidence 5668875 7899999999999999998875 4568899999987765
No 68
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=50.21 E-value=11 Score=35.36 Aligned_cols=126 Identities=22% Similarity=0.346 Sum_probs=70.5
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcch-hhhhcccccc-ccccccccccccchhHHHHhhhhhcceeeeeec----C
Q 027423 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCS-VVSTLLKEEE-TEAWGVEPYDIEDADARCKSLVHKGIVRVADIK----F 148 (223)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~-VVs~LLkEee-tEAWGVEPydiedad~~CKsLVrKGiVRvADIk----f 148 (223)
..+.+||--|+.+ |..+ +||-|--..+. |.--|.+..+ .+.==+.-|.-.++..-=+-.-++|+=-+|-.. |
T Consensus 121 ~~i~~ai~~L~~~-g~pv-rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAf 198 (311)
T PF12147_consen 121 ELIRQAIARLREQ-GRPV-RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAF 198 (311)
T ss_pred HHHHHHHHHHHhc-CCce-EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCC
Confidence 3456666666543 3333 56666433333 3333333333 111122233333333333444455654332111 1
Q ss_pred -CCCCCCC--CccEEEecccccccChhh-hccccccchh-hccCceEEEeecCcchhhc
Q 027423 149 -PLPYRAK--SFPLVIVSDALDYLSPKY-LNKTLPDLAR-VASDGVLIFAGISSMFHLM 202 (223)
Q Consensus 149 -pLPYR~k--SFSlVIVSDaLDyLspry-LNkTLPeLaR-vsadglViF~G~P~q~~L~ 202 (223)
+=-|.+- .-.|+|||-..|+.+-.- ++.+|--|++ +..+|.+|+||+|=.-||.
T Consensus 199 d~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle 257 (311)
T PF12147_consen 199 DRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLE 257 (311)
T ss_pred CHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH
Confidence 0012211 127999999999999855 7888999999 8999999999999766553
No 69
>PLN02823 spermine synthase
Probab=50.15 E-value=29 Score=31.75 Aligned_cols=112 Identities=16% Similarity=0.252 Sum_probs=62.7
Q ss_pred CccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhhcc--------
Q 027423 70 DFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGI-------- 140 (223)
Q Consensus 70 ~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrKGi-------- 140 (223)
|...--|.+--+|.+. -..-++||++|=..+.....+|+.. ..+.-.| |.|...-.+.|+=+
T Consensus 85 de~~YhE~l~h~~l~~---~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~V------EiD~~vv~lar~~~~~~~~~~~ 155 (336)
T PLN02823 85 DEFVYHESLVHPALLH---HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMC------DIDQEVVDFCRKHLTVNREAFC 155 (336)
T ss_pred hHHHHHHHHHhHHHhh---CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEE------ECCHHHHHHHHHhccccccccc
Confidence 4445556665566653 2356899999999999999899853 2233333 33333333333211
Q ss_pred -----eeeeeecCCCCCCCCCccEEEeccccccc---------ChhhhccccccchhhccCceEEEe
Q 027423 141 -----VRVADIKFPLPYRAKSFPLVIVSDALDYL---------SPKYLNKTLPDLARVASDGVLIFA 193 (223)
Q Consensus 141 -----VRvADIkfpLPYR~kSFSlVIVSDaLDyL---------spryLNkTLPeLaRvsadglViF~ 193 (223)
|.++|---=|.-..++|++|| .|+-|=. +..++.+.+ ..++..+|++++-
T Consensus 156 dprv~v~~~Da~~~L~~~~~~yDvIi-~D~~dp~~~~~~~~Lyt~eF~~~~~--~~~L~p~Gvlv~q 219 (336)
T PLN02823 156 DKRLELIINDARAELEKRDEKFDVII-GDLADPVEGGPCYQLYTKSFYERIV--KPKLNPGGIFVTQ 219 (336)
T ss_pred CCceEEEEChhHHHHhhCCCCccEEE-ecCCCccccCcchhhccHHHHHHHH--HHhcCCCcEEEEe
Confidence 344443333444456888877 4554421 222332111 2568899998765
No 70
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=45.20 E-value=23 Score=29.15 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=42.5
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHH-hhhhhcceeeeeecCCCCCCCCCccEEEe
Q 027423 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCK-SLVHKGIVRVADIKFPLPYRAKSFPLVIV 162 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CK-sLVrKGiVRvADIkfpLPYR~kSFSlVIV 162 (223)
.+||.+|..+-.+...|.++- ..+..|+|.-+ ++-+..|++ .+..+--+..+|+.-+++ ..+|++||.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~ 181 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVS 181 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEE
Confidence 479999999987766666554 46778877543 344555555 111122345567644544 578999876
No 71
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=43.07 E-value=24 Score=28.57 Aligned_cols=55 Identities=20% Similarity=0.455 Sum_probs=40.2
Q ss_pred CCccEEEecccccccChhhhccccccchhhccCceEEEeecCcchhhccccchhHHHHHHHh
Q 027423 155 KSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGISSMFHLMKFSSDTWTEIHALM 216 (223)
Q Consensus 155 kSFSlVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G~P~q~~L~kfssswW~r~~~~~ 216 (223)
..+++|+++|+==.++|.||+..+.+|+. ...|+| |+.|--.. ...||.++-++.
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglV--t~~~~~~~----~~~~~~~l~~~~ 84 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLV--TGLPRGVP----ARGFWSRLEAAF 84 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEE--EecccccC----CcCHHHHHHHHH
Confidence 67899999999889999999999999987 445555 55554221 235777765443
No 72
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=42.69 E-value=26 Score=29.97 Aligned_cols=106 Identities=22% Similarity=0.401 Sum_probs=61.8
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccc-hhHHHHhhhhhc-c---eeeeeec-C
Q 027423 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVHKG-I---VRVADIK-F 148 (223)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydied-ad~~CKsLVrKG-i---VRvADIk-f 148 (223)
+||.+|+++++. -|+|-+|=...-=---|- +- -|-|.-.|+.+ +-.+.+.+.++- + .+++||. +
T Consensus 20 s~v~~a~~~~~~------g~~LDlgcG~GRNalyLA-~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 20 SEVLEAVPLLKP------GKALDLGCGEGRNALYLA-SQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF 89 (192)
T ss_dssp HHHHHHCTTS-S------SEEEEES-TTSHHHHHHH-HT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB
T ss_pred HHHHHHHhhcCC------CcEEEcCCCCcHHHHHHH-HC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc
Confidence 679999998863 489999865543222222 21 34455566665 334456665433 2 3677874 4
Q ss_pred CCCCCCCCccEEEecccccccChhhhccccccch-hhccCceEEEe
Q 027423 149 PLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLA-RVASDGVLIFA 193 (223)
Q Consensus 149 pLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLa-RvsadglViF~ 193 (223)
.+| ..|.+|+.+-++.||.|...-+-+-.+. .+...|+.++.
T Consensus 90 ~~~---~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 90 DFP---EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp S-T---TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccc---CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 443 5799888778999999987755555543 34456776663
No 73
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=40.74 E-value=8.7 Score=31.88 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=28.3
Q ss_pred eeecCCCCCCCCCccEEE-ecccccccChhhhccccccchhhccCceEEEeecCcch
Q 027423 144 ADIKFPLPYRAKSFPLVI-VSDALDYLSPKYLNKTLPDLARVASDGVLIFAGISSMF 199 (223)
Q Consensus 144 ADIkfpLPYR~kSFSlVI-VSDaLDyLspryLNkTLPeLaRvsadglViF~G~P~q~ 199 (223)
.|+-+.-.|||++|+=++ =.++++-|...--+++.| -++|+|-||-=
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~---------~~ll~G~~G~G 50 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMP---------HLLFAGPPGTG 50 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCC---------eEEEECCCCCC
Confidence 455666789999999544 344444433211123333 36999999964
No 74
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=40.17 E-value=16 Score=28.29 Aligned_cols=70 Identities=11% Similarity=0.234 Sum_probs=44.3
Q ss_pred eecCCCCC---CCCCccEEEecccccccC------hhhhccccccchhhccCceEEEeecCcchhhccccchhHHHHHH
Q 027423 145 DIKFPLPY---RAKSFPLVIVSDALDYLS------PKYLNKTLPDLARVASDGVLIFAGISSMFHLMKFSSDTWTEIHA 214 (223)
Q Consensus 145 DIkfpLPY---R~kSFSlVIVSDaLDyLs------pryLNkTLPeLaRvsadglViF~G~P~q~~L~kfssswW~r~~~ 214 (223)
+|.||||. |+|.++.-|-++-|..=- +-+||-.|+.-.+.+.--=-|--|.==+..|.|-...||...+.
T Consensus 17 ~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~~~~wW~~v~~ 95 (102)
T cd06495 17 EVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKCSEVWWNAVLK 95 (102)
T ss_pred EEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEECCCcccchhhC
Confidence 68899996 478888888888876522 24888888877666432111111211122567767789998753
No 75
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=38.84 E-value=40 Score=28.40 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=55.7
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhh-hhhcceeeeeecCCCCCCCCCccEEEeccccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSL-VHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsL-VrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyL 169 (223)
.+||-+|=.|.++--.+|.....++=|||-. -++.+..|.+.+ +.+--+...|+.-.++....+|++|+ +
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~-------~ 127 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVF-------V 127 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEE-------E
Confidence 4899998888766544555555677777642 233344444333 11222445676544554445788775 3
Q ss_pred Chhh----hccccccchh---hccCceEEEeecCcchhh
Q 027423 170 SPKY----LNKTLPDLAR---VASDGVLIFAGISSMFHL 201 (223)
Q Consensus 170 spry----LNkTLPeLaR---vsadglViF~G~P~q~~L 201 (223)
+|-| .++.+.-|+. +..+++|+.. .+.+.++
T Consensus 128 DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve-~~~~~~~ 165 (199)
T PRK10909 128 DPPFRKGLLEETINLLEDNGWLADEALIYVE-SEVENGL 165 (199)
T ss_pred CCCCCCChHHHHHHHHHHCCCcCCCcEEEEE-ecCCCCc
Confidence 4544 3334444444 4678877765 4444433
No 76
>PRK14967 putative methyltransferase; Provisional
Probab=38.67 E-value=34 Score=28.03 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=41.1
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEe
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIV 162 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIV 162 (223)
.+||-+|..+..+...+.+....+..|||..+ ++-+..|++..=-+--+..+|+.-++ +..+|++||.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~--~~~~fD~Vi~ 107 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV--EFRPFDVVVS 107 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc--cCCCeeEEEE
Confidence 58999999997765556655445777777654 44344444432111234456765444 4578999885
No 77
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=36.56 E-value=33 Score=28.86 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=29.2
Q ss_pred cccccCCCCC-ccccccccccCCCCchhhhHHHHHHH-----hhhhhhcc
Q 027423 9 TRRLVDTGSF-PFTGALQSKSRSSPLLSVGLVLVGAF-----LLIGYAFS 52 (223)
Q Consensus 9 srR~~d~G~~-~~~g~~~sKSrsspllsi~lv~vgai-----lli~Y~ys 52 (223)
+|-+.|+-.. -++|-++..+-++|.--+|++++|.+ +...|.|-
T Consensus 59 ~R~l~~tNtt~~tGGELr~~pte~p~evvG~l~LGvV~GG~i~vLcylyl 108 (127)
T PF06040_consen 59 SRSLSDTNTTTKTGGELRGPPTESPWEVVGYLILGVVAGGLIAVLCYLYL 108 (127)
T ss_pred cccccccCCccccCceEeCCCCCCCeeeeehhhHHHHhccHHHHHHHHhc
Confidence 3444555544 56688888888899888777776654 45557664
No 78
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=36.46 E-value=78 Score=25.10 Aligned_cols=108 Identities=14% Similarity=0.193 Sum_probs=63.7
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcchhhhhcccc--ccccccccccccccchhHHHHhhhhhccee-eeeecCCC-
Q 027423 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVHKGIVR-VADIKFPL- 150 (223)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPydiedad~~CKsLVrKGiVR-vADIkfpL- 150 (223)
.|+-+.++.+++ | .+||-+|-.|..+...+.+. +..+.+|||+-+.. + ..++-- .+|+.-+-
T Consensus 21 ~~~~~~~~~i~~--g---~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~---~~~i~~~~~d~~~~~~ 86 (188)
T TIGR00438 21 LQLNQKFKLIKP--G---DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P---IENVDFIRGDFTDEEV 86 (188)
T ss_pred HHHHHHhcccCC--C---CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c---CCCceEEEeeCCChhH
Confidence 345555655554 2 58999999998876666554 35579999988743 1 123322 24665321
Q ss_pred ------CCCCCCccEEEeccc---------ccccCh-hhhccccccchhh-ccCceEEEeecCc
Q 027423 151 ------PYRAKSFPLVIVSDA---------LDYLSP-KYLNKTLPDLARV-ASDGVLIFAGISS 197 (223)
Q Consensus 151 ------PYR~kSFSlVIVSDa---------LDyLsp-ryLNkTLPeLaRv-sadglViF~G~P~ 197 (223)
.+...+|++|+. |+ ++++.. .-+.++|-++.|+ ...|.+++..+..
T Consensus 87 ~~~l~~~~~~~~~D~V~~-~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMS-DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HHHHHHHhCCCCccEEEc-CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 134668998875 43 222111 1135677777776 5677888865443
No 79
>PRK00811 spermidine synthase; Provisional
Probab=33.74 E-value=84 Score=27.41 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=64.2
Q ss_pred cchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhh---hcc-------
Q 027423 72 SCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVH---KGI------- 140 (223)
Q Consensus 72 sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVr---KGi------- 140 (223)
..--|.+..+|.+. -..-++||.+|-.+..+...+|+.. ..+.-+||.-. ++-..||.... .|.
T Consensus 60 ~~Y~e~l~h~~~~~---~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~ 134 (283)
T PRK00811 60 FIYHEMMTHVPLFA---HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVE 134 (283)
T ss_pred hhHHHHhhhHHHhh---CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceE
Confidence 34455666667663 2346799999999999999999862 23444444321 12223333221 122
Q ss_pred eeeeeecCCCCCCCCCccEEEecccccccChh-hh--cccccc-chhhccCceEEEe-ecC
Q 027423 141 VRVADIKFPLPYRAKSFPLVIVSDALDYLSPK-YL--NKTLPD-LARVASDGVLIFA-GIS 196 (223)
Q Consensus 141 VRvADIkfpLPYR~kSFSlVIVSDaLDyLspr-yL--NkTLPe-LaRvsadglViF~-G~P 196 (223)
+.++|..--++-..++|++||+ |+-|-..|- -| ..-+-+ -.++..+|++++- +.|
T Consensus 135 v~~~Da~~~l~~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 135 LVIGDGIKFVAETENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred EEECchHHHHhhCCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 4557754334445678998875 654322221 11 001112 2456788887764 444
No 80
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=33.12 E-value=21 Score=27.29 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.2
Q ss_pred hccCc-eEEEeecCcch
Q 027423 184 VASDG-VLIFAGISSMF 199 (223)
Q Consensus 184 vsadg-lViF~G~P~q~ 199 (223)
+++|| |.+|-|.|+..
T Consensus 15 i~~dG~LslF~G~P~~~ 31 (75)
T PF08955_consen 15 ISEDGVLSLFEGPPGEE 31 (75)
T ss_dssp EETTTEEEEBSSS-STT
T ss_pred EcCCCcEEEEecCCCCC
Confidence 57899 88999999986
No 81
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=32.32 E-value=72 Score=28.92 Aligned_cols=100 Identities=14% Similarity=0.036 Sum_probs=67.1
Q ss_pred ceeeeecCCcchhhhhccccccccccccc--cccccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEeccccccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVE--Pydiedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyL 169 (223)
.+||-+|=.|-.+---|.... .+.+||| |--++++..|.+.+= .+--+..+|+.-.++-..++|++||+ |
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~-D----- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV-N----- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE-C-----
Confidence 589999888877765565443 6789998 666777887776541 11124556764334433356887665 4
Q ss_pred Chhh--hccccccchhhccCceEEEeecCcch
Q 027423 170 SPKY--LNKTLPDLARVASDGVLIFAGISSMF 199 (223)
Q Consensus 170 spry--LNkTLPeLaRvsadglViF~G~P~q~ 199 (223)
.||- -++.+..|++...+++|..+-+|..+
T Consensus 308 PPr~G~~~~~l~~l~~~~p~~ivyvsc~p~Tl 339 (374)
T TIGR02085 308 PPRRGIGKELCDYLSQMAPKFILYSSCNAQTM 339 (374)
T ss_pred CCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHH
Confidence 5553 23555677888889999999999877
No 82
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=31.89 E-value=34 Score=26.87 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=32.9
Q ss_pred hccCCCccCccccccccccCCccchHHHHhhhhHHHHHhccccceeeeec
Q 027423 50 AFSGSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVG 99 (223)
Q Consensus 50 ~ysgsg~~~~~~~~vs~~eg~~sCt~eV~~aiP~LkkaYGdsM~kVLHVG 99 (223)
=|+||++|+.+-..--+-+-.......+..|+..|++.+.-.-.+|--+|
T Consensus 21 ~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G 70 (213)
T PF00326_consen 21 NYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMG 70 (213)
T ss_dssp E-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred cCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEc
Confidence 47899988764322112222445778899999999999866666666665
No 83
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=31.77 E-value=97 Score=27.54 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=39.7
Q ss_pred ceeeeecCCcchhhhhccccc-cccccccc--cccccchhHHHHhhhhhc--ceeeeeecCCCCCCCCCccEEEe
Q 027423 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVE--PYDIEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIV 162 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVE--Pydiedad~~CKsLVrKG--iVRvADIkfpLPYR~kSFSlVIV 162 (223)
.+||-+|-.+..+--.|.++- ..+..|+| |--++-+..|++..--.. -+..+|+.-++| ..+|++||.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEE
Confidence 479999999988766666543 34455554 333445556655431111 134467643454 457998886
No 84
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=30.94 E-value=18 Score=27.22 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=12.4
Q ss_pred cccccccccccchhHHHHh
Q 027423 116 EAWGVEPYDIEDADARCKS 134 (223)
Q Consensus 116 EAWGVEPydiedad~~CKs 134 (223)
=.|||.|+-+++.+.+...
T Consensus 57 l~~GV~p~~~~~~~~~~~~ 75 (117)
T PF02887_consen 57 LYWGVYPVLIEEFDKDTEE 75 (117)
T ss_dssp GSTTEEEEECSSHSHSHHH
T ss_pred cccceEEEEeccccccHHH
Confidence 4699999766665533333
No 85
>PF14035 YlzJ: YlzJ-like protein
Probab=30.83 E-value=18 Score=26.27 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=12.6
Q ss_pred EEecccccccChhh
Q 027423 160 VIVSDALDYLSPKY 173 (223)
Q Consensus 160 VIVSDaLDyLspry 173 (223)
+|-+|.-|||.|+|
T Consensus 46 llStnP~dYLnp~~ 59 (66)
T PF14035_consen 46 LLSTNPQDYLNPDY 59 (66)
T ss_pred EecCChHHHcCccC
Confidence 57799999999998
No 86
>COG0312 TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
Probab=30.34 E-value=16 Score=33.53 Aligned_cols=108 Identities=19% Similarity=0.363 Sum_probs=78.0
Q ss_pred hhHHHHHhccccceeeeecCCcchhhhhccccccc--cccccccccccchhHHHHhhhhhccee--eeee----cCCCCC
Q 027423 81 IPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEET--EAWGVEPYDIEDADARCKSLVHKGIVR--VADI----KFPLPY 152 (223)
Q Consensus 81 iP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeet--EAWGVEPydiedad~~CKsLVrKGiVR--vADI----kfpLPY 152 (223)
-++|+..+|+ -|||+-|+|+. +.| ..+|--|||=|=+-+.++.||++|+++ +.|. |+.++-
T Consensus 260 s~~~~~~~G~------~v~se~lti~D-----dp~~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~yl~~~~sA~~~G~~~ 328 (454)
T COG0312 260 SSLLADKLGK------RVASELLTIID-----DPTLPGGLGSYPFDDEGVPTRRTVLIENGVLKGYLHDRYSARKLGLES 328 (454)
T ss_pred chHhhhhhhh------hhcCceeEEEe-----CCCCCCCccCcccCCCCCccceeEEEEcCEEeehhcchhhHHHhCCCc
Confidence 3446677776 68999999875 333 479999999999999999999999986 3444 456666
Q ss_pred ----CCCCccEEEeccc-ccccChhhhccccccchhhccCceEEEeecCcchhh
Q 027423 153 ----RAKSFPLVIVSDA-LDYLSPKYLNKTLPDLARVASDGVLIFAGISSMFHL 201 (223)
Q Consensus 153 ----R~kSFSlVIVSDa-LDyLspryLNkTLPeLaRvsadglViF~G~P~q~~L 201 (223)
|..||+.+...-. =-|+.|- +.++-||-+=--+|+.|-.-.=||...
T Consensus 329 TGnar~~~~~~~p~~rm~N~~i~~G--~~s~eeli~~~~~Giyv~~~~gg~~~~ 380 (454)
T COG0312 329 TGNARRGSYAHVPIPRMTNTYIEPG--DYSFEELIEDVKRGLYVTNLWGGQNDI 380 (454)
T ss_pred CcccccccCCcCCccceecccccCC--CCCHHHHHHhhCcEEEEecccCceecc
Confidence 5667765554333 2477888 888888887777788886611177733
No 87
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=28.68 E-value=49 Score=28.98 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=64.8
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhhhcc----eeeeeecCCCCCCCCCccEEEecccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSDAL 166 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsLVrKGi----VRvADIkfpLPYR~kSFSlVIVSDaL 166 (223)
.+||.+|-.+-.+--.|.+. ..+.+|||.. -++.+..|++.. |+ +..+|+.--++--.+.|++||+ |
T Consensus 175 ~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~---~l~~v~~~~~D~~~~~~~~~~~~D~Vv~-d-- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAEL---GLTNVQFQALDSTQFATAQGEVPDLVLV-N-- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHc---CCCceEEEEcCHHHHHHhcCCCCeEEEE-C--
Confidence 68999998887765555553 4688999854 356666666443 32 3445654222112346888774 4
Q ss_pred cccChhh--hccccccchhhccCceEEEeecCcch--hhccc
Q 027423 167 DYLSPKY--LNKTLPDLARVASDGVLIFAGISSMF--HLMKF 204 (223)
Q Consensus 167 DyLspry--LNkTLPeLaRvsadglViF~G~P~q~--~L~kf 204 (223)
.||. .++.+.-|.+...+.+|..+-+|.-. ++..+
T Consensus 248 ---PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 248 ---PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred ---CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 5654 34555667778888999999999765 44443
No 88
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=28.57 E-value=53 Score=30.22 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=65.0
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhh-hcceeeeeecCC---CCCCCCCccEEEecccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVH-KGIVRVADIKFP---LPYRAKSFPLVIVSDAL 166 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsLVr-KGiVRvADIkfp---LPYR~kSFSlVIVSDaL 166 (223)
.+||-+|-.|..+--.|.+. ..+..|||.. -++.|..|.+..-- .--+..+|+.=. +|+..++|++||+
T Consensus 299 ~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~---- 373 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL---- 373 (443)
T ss_pred CEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE----
Confidence 47999998888765555544 3577788754 46677777664321 112445666422 4566678998864
Q ss_pred cccChhh--hccccccchhhccCceEEEeecCcch
Q 027423 167 DYLSPKY--LNKTLPDLARVASDGVLIFAGISSMF 199 (223)
Q Consensus 167 DyLspry--LNkTLPeLaRvsadglViF~G~P~q~ 199 (223)
+|-| +.+.+..|++...+++|.++=+|.-+
T Consensus 374 ---dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tl 405 (443)
T PRK13168 374 ---DPPRAGAAEVMQALAKLGPKRIVYVSCNPATL 405 (443)
T ss_pred ---CcCCcChHHHHHHHHhcCCCeEEEEEeChHHh
Confidence 3333 34556667778899999999999766
No 89
>PRK10536 hypothetical protein; Provisional
Probab=28.18 E-value=48 Score=30.08 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=47.8
Q ss_pred hhcceeeeeecCCCCCCCCCc--cEEEecccccccChhhhccccccchhhccCceEEEeecCcchhhcc
Q 027423 137 HKGIVRVADIKFPLPYRAKSF--PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGISSMFHLMK 203 (223)
Q Consensus 137 rKGiVRvADIkfpLPYR~kSF--SlVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G~P~q~~L~k 203 (223)
.+|.|.++++.| -|-.+| ++||+-. -.-++|..+...| .|+..+--+|++|.|.|.++..
T Consensus 158 ~~~~Iei~~l~y---mRGrtl~~~~vIvDE-aqn~~~~~~k~~l---tR~g~~sk~v~~GD~~QiD~p~ 219 (262)
T PRK10536 158 EIGKVEIAPFAY---MRGRTFENAVVILDE-AQNVTAAQMKMFL---TRLGENVTVIVNGDITQCDLPR 219 (262)
T ss_pred ccCcEEEecHHH---hcCCcccCCEEEEec-hhcCCHHHHHHHH---hhcCCCCEEEEeCChhhccCCC
Confidence 469999997766 366666 6666644 5778998887776 8999999999999999998864
No 90
>PRK06922 hypothetical protein; Provisional
Probab=27.68 E-value=68 Score=32.91 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=61.6
Q ss_pred ceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCC--CCCCCccEEEecccc
Q 027423 93 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLP--YRAKSFPLVIVSDAL 166 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLP--YR~kSFSlVIVSDaL 166 (223)
.+||-||-.|=.+...|.+. .+.+..|++.-. ++.+..+++..- .. -+..+|+. .+| +.+.||++|+.+-++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~-dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAI-NLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchH-hCccccCCCCEEEEEEchHH
Confidence 48999998884443333332 356888887765 455554443210 11 12346753 245 778899999988766
Q ss_pred ccc-----------Chhhhccccccchhhcc-CceEEEe
Q 027423 167 DYL-----------SPKYLNKTLPDLARVAS-DGVLIFA 193 (223)
Q Consensus 167 DyL-----------spryLNkTLPeLaRvsa-dglViF~ 193 (223)
..+ .+..+.+.|-++.|+=. .|.+++.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 543 24677788888888755 5566665
No 91
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=27.51 E-value=29 Score=29.85 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=26.3
Q ss_pred eeee--cCCcchhhhhcccc-cccccc----cccccc-----ccchhHHHHhh
Q 027423 95 VLHV--GPDTCSVVSTLLKE-EETEAW----GVEPYD-----IEDADARCKSL 135 (223)
Q Consensus 95 VLHV--GPdtC~VVs~LLkE-eetEAW----GVEPyd-----iedad~~CKsL 135 (223)
+||+ ||+++.++..|.++ -+...+ -|.|++ .++...-|+.+
T Consensus 2 LLH~CCaPCs~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~ 54 (176)
T PF02677_consen 2 LLHICCAPCSTYPLERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKL 54 (176)
T ss_pred eeeecCccccHHHHHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 6898 99999999999877 222222 255553 34455555554
No 92
>PF03815 LCCL: LCCL domain; InterPro: IPR004043 The LCCL domain has been named after the best characterised proteins that were found to contain it, namely Limulus factor C, Coch-5b2 and Lgl1. It is an about 100 amino acids domain whose C-terminal part contains a highly conserved histidine in a conserved motif YxxxSxxCxAAVHxGVI. The LCCL module is thought to be an autonomously folding domain that has been used for the construction of various modular proteins through exon-shuffling. It has been found in various metazoan proteins in association with complement B-type domains, C-type lectin domains, von Willebrand type A domains, CUB domains, discoidin lectin domains or CAP domains. It has been proposed that the LCCL domain could be involved in lipopolysaccharide (LPS) binding [, ]. Secondary structure prediction suggests that the LCCL domain contains six beta strands and two alpha helices []. Some proteins known to contain a LCCL domain include Limulus factor C, a LPS endotoxin-sensitive trypsin type serine protease which serves to protect the organism from bacterial infection; vertebrate cochlear protein cochlin or coch-5b2 (Cochlin is probably a secreted protein, mutations affecting the LCCL domain of coch-5b2 cause the deafness disorder DFNA9 in humans); and mammalian late gestation lung protein Lgl1, contains two tandem copies of the LCCL domain [].; PDB: 1JBI_A.
Probab=27.30 E-value=31 Score=26.30 Aligned_cols=41 Identities=20% Similarity=0.525 Sum_probs=26.6
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcce
Q 027423 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIV 141 (223)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiV 141 (223)
..+++=.=|.-| ++++...||-.+|. +-++-|++-|+-|++
T Consensus 18 ~~~~~v~CP~~C-------~~~~~~v~Gt~~Y~--~~SsIC~AAIHaGvi 58 (96)
T PF03815_consen 18 GTSFTVRCPAGC-------SDSKGTVYGTDVYS--ADSSICKAAIHAGVI 58 (96)
T ss_dssp SSEEEEEE-S----------SSS--EESSSSEE--TTSBHHHHHHHHTSS
T ss_pred CceEEEECCCCC-------CCCCCeEECCcccc--CCCHHHHHHHhCCEE
Confidence 344444568888 23448999999997 557899999999987
No 93
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=27.29 E-value=1.6e+02 Score=25.76 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=60.6
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccch-hHHH-Hhhhhhc-cee----eeeecC--CCCCCC-CCccEEEe
Q 027423 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDA-DARC-KSLVHKG-IVR----VADIKF--PLPYRA-KSFPLVIV 162 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydieda-d~~C-KsLVrKG-iVR----vADIkf--pLPYR~-kSFSlVIV 162 (223)
.+||-+|..|+.....|++.-.. ..-|-+.|+... =..| +.|.+.. -++ .+|+-- ++|-.. .+..+++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 47999999999999888876431 223445566552 1333 3343321 132 467643 344322 22455666
Q ss_pred cc-cccccChhhhccccccchhhcc-CceEEE
Q 027423 163 SD-ALDYLSPKYLNKTLPDLARVAS-DGVLIF 192 (223)
Q Consensus 163 SD-aLDyLspryLNkTLPeLaRvsa-dglViF 192 (223)
++ .+-+++|......|-+++++=. +|.++|
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 55 6777899999999999988754 566655
No 94
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=26.67 E-value=25 Score=32.78 Aligned_cols=12 Identities=50% Similarity=0.950 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 027423 111 KEEETEAWGVEP 122 (223)
Q Consensus 111 kEeetEAWGVEP 122 (223)
-.|-||.|||+-
T Consensus 179 Ld~~T~~WGvkV 190 (288)
T KOG2621|consen 179 LDEATEPWGVKV 190 (288)
T ss_pred hhhcccccceEE
Confidence 478899999863
No 95
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=26.49 E-value=26 Score=30.67 Aligned_cols=10 Identities=70% Similarity=1.248 Sum_probs=9.1
Q ss_pred eeecCCCCCC
Q 027423 144 ADIKFPLPYR 153 (223)
Q Consensus 144 ADIkfpLPYR 153 (223)
++||||||.|
T Consensus 141 ~kikFPL~~r 150 (169)
T KOG0829|consen 141 SKIKFPLPHR 150 (169)
T ss_pred cCcccccccc
Confidence 5799999999
No 96
>PRK04457 spermidine synthase; Provisional
Probab=25.86 E-value=19 Score=31.04 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=52.4
Q ss_pred ccceeeeecCCcchhhhhcccc-ccccccccccccccchhHHHHhhhh-hc-----ceeeeeecCCCCCCCCCccEEEec
Q 027423 91 SMHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVH-KG-----IVRVADIKFPLPYRAKSFPLVIVS 163 (223)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPydiedad~~CKsLVr-KG-----iVRvADIkfpLPYR~kSFSlVIVS 163 (223)
.-++||++|-.+.++...|++. .+.+..+||.= +++-..|+.-.. .+ -|.++|..--++=-+++|++|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~- 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN--PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV- 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE-
Confidence 4578999999999877766554 24556666541 123333333221 11 24557753223322467998875
Q ss_pred cccccc-Chhhhc--cccccc-hhhccCceEEEe
Q 027423 164 DALDYL-SPKYLN--KTLPDL-ARVASDGVLIFA 193 (223)
Q Consensus 164 DaLDyL-spryLN--kTLPeL-aRvsadglViF~ 193 (223)
|+.+-- -|..++ ..+.+. .++..+|++++.
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 553311 111222 111222 357888988873
No 97
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=25.73 E-value=37 Score=23.14 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.6
Q ss_pred chhHHHHhhhhhcceeeeeec
Q 027423 127 DADARCKSLVHKGIVRVADIK 147 (223)
Q Consensus 127 dad~~CKsLVrKGiVRvADIk 147 (223)
.+...-++|+++|+|+..+-+
T Consensus 38 ~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 38 TVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEcCc
Confidence 356778999999999998865
No 98
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=24.19 E-value=60 Score=26.18 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=64.0
Q ss_pred HHHHhccccceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhccee--eeeecCCCC--CCCCC
Q 027423 84 LKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKGIVR--VADIKFPLP--YRAKS 156 (223)
Q Consensus 84 LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLVrKGiVR--vADIkfpLP--YR~kS 156 (223)
.++.+|+...++|-+|=.+=.+...|.++. +....|||+++ ++-+..+++..=. +.|+ ..|+..-++ +-..+
T Consensus 9 ~~~~f~~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~ 87 (194)
T TIGR00091 9 FATVFGNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGS 87 (194)
T ss_pred HHHHhCCCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCc
Confidence 577889888999999988877766676653 67889999975 3344444443211 1233 356532111 33448
Q ss_pred ccEEEecccccccChh-----hhc-cccccchhh-ccCceEEEeecCc
Q 027423 157 FPLVIVSDALDYLSPK-----YLN-KTLPDLARV-ASDGVLIFAGISS 197 (223)
Q Consensus 157 FSlVIVSDaLDyLspr-----yLN-kTLPeLaRv-sadglViF~G~P~ 197 (223)
|+.|++.=-.-|-..+ -+| .-+-+++|+ ...|.++|+-...
T Consensus 88 ~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 88 LSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred eeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 8888753111111111 111 134556776 5578888764433
No 99
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=23.26 E-value=42 Score=24.24 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=24.1
Q ss_pred hccccccchhhccCceEEEeecCcch
Q 027423 174 LNKTLPDLARVASDGVLIFAGISSMF 199 (223)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~P~q~ 199 (223)
||+..+|-.++-.+|..+|.|.+|..
T Consensus 37 L~~~~~~~v~l~v~g~~~~~g~lg~~ 62 (77)
T TIGR02480 37 LDKLAGEPLDILVNGRLIARGEVVVV 62 (77)
T ss_pred cCCCCCCcEEEEECCEEEEEEEEEEE
Confidence 68889999999999999999999987
No 100
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=23.05 E-value=54 Score=25.51 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=29.6
Q ss_pred ecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeee
Q 027423 98 VGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVA 144 (223)
Q Consensus 98 VGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvA 144 (223)
.|||.=..+++.+ -.+++++...|+.|.+.|+|.=-
T Consensus 19 ~~~Dy~k~ia~~l-----------~~~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 19 AGPDYAKSIARRL-----------KIPLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred HCCCcHHHHHHHH-----------CCCHHHHHHHHHHHHHCCCeEEe
Confidence 4888888888776 36789999999999999998643
No 101
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=22.96 E-value=97 Score=28.10 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=73.1
Q ss_pred ceeeee--cCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccC
Q 027423 93 HKVLHV--GPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (223)
Q Consensus 93 ~kVLHV--GPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyLs 170 (223)
++||-. |++--++.+.+.--.+.-+=++.||-+...+-|-++=.-.=.+-.+|+-+ -+.-|.+|+++|.. -.
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlf--y~ 154 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLF--YN 154 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeecee--cC
Confidence 466655 55666677766666666666788888888877776644111122234433 56789999999974 34
Q ss_pred hhhhccccccchhhccCceEEEeecCcchhhcc
Q 027423 171 PKYLNKTLPDLARVASDGVLIFAGISSMFHLMK 203 (223)
Q Consensus 171 pryLNkTLPeLaRvsadglViF~G~P~q~~L~k 203 (223)
+-.=-|.+|-+.|..+.|..++.|-|+--.|.|
T Consensus 155 ~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk 187 (218)
T COG3897 155 HTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPK 187 (218)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEeCCCCCCCch
Confidence 444556788899999999999999999876555
No 102
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=22.95 E-value=29 Score=32.52 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=24.5
Q ss_pred ccccccChhhhccccccchhhccCceEEEee
Q 027423 164 DALDYLSPKYLNKTLPDLARVASDGVLIFAG 194 (223)
Q Consensus 164 DaLDyLspryLNkTLPeLaRvsadglViF~G 194 (223)
...+|||-..|..|+-|.|..-+||+||--.
T Consensus 274 ~~~~fLs~~DL~~TigesaalGa~GvViWG~ 304 (337)
T PF01630_consen 274 STDEFLSQEDLVNTIGESAALGAAGVVIWGS 304 (337)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT-SEEEEE--
T ss_pred CccccchhhHHHHHHHHHHHcCCCeEEEeec
Confidence 4688999999999999999999999999864
No 103
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=22.82 E-value=1e+02 Score=24.33 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=46.7
Q ss_pred hhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccChhhhccccccchhh
Q 027423 105 VVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV 184 (223)
Q Consensus 105 VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRv 184 (223)
++++.+.++.-.+.+.+-|..+--...+.+ -||++|=.-...++...++++|+.|. ..+++. +..+
T Consensus 11 ila~a~~~~G~~v~~~~~ygs~~rGG~~~~-----~vris~~~~~~~~~~~~~Dilv~l~~------~~~~~~---~~~l 76 (173)
T PF01558_consen 11 ILARAAAREGYYVQSTPEYGSEIRGGPVVS-----HVRISDEPIIPSPPVGEADILVALDP------EALERH---LKGL 76 (173)
T ss_dssp HHHHHHHHTTSEEEEEEEEESSSSSSCEEE-----EEEEESS--SSSS-TSSESEEEESSH------HHHHHC---GTTC
T ss_pred HHHHHHHHcCCCEEEEeCCChhhcCCeEEE-----EEEEecCcCccCcccCCCCEEEEcCH------HHHHHH---hcCc
Confidence 455666677777778888876633222222 36788821344555579999998765 333333 3347
Q ss_pred ccCceEEEeec
Q 027423 185 ASDGVLIFAGI 195 (223)
Q Consensus 185 sadglViF~G~ 195 (223)
..+|+||.-..
T Consensus 77 ~~~g~vi~ns~ 87 (173)
T PF01558_consen 77 KPGGVVIINSS 87 (173)
T ss_dssp ETTEEEEEETT
T ss_pred CcCeEEEEECC
Confidence 78899988754
No 104
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=22.18 E-value=46 Score=31.28 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=20.8
Q ss_pred HHhhhhHHHHH--hccccceeeeecC-Ccchhhhhccccccccc
Q 027423 77 IQRAIPILKKA--YGDSMHKVLHVGP-DTCSVVSTLLKEEETEA 117 (223)
Q Consensus 77 V~~aiP~Lkka--YGdsM~kVLHVGP-dtC~VVs~LLkEeetEA 117 (223)
+.+.|--|+++ .|.+|--+. |=| +.=+=|.+.|.+|-.+|
T Consensus 5 ~k~~~~~l~~~~g~gt~lisl~-ipp~~~i~~v~~~l~~e~~~a 47 (403)
T TIGR03676 5 FKKLLEELKKKKGRGTELISLY-IPPDKQISDVVNQLRDEYSQA 47 (403)
T ss_pred HHHHHHHHHhCcCCCceEEEEE-eCCCCcHHHHHHHHHHHHhhh
Confidence 44555556544 444554433 333 33455677777665554
No 105
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=22.10 E-value=36 Score=27.99 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.8
Q ss_pred hccCceEEEeecCcchh
Q 027423 184 VASDGVLIFAGISSMFH 200 (223)
Q Consensus 184 vsadglViF~G~P~q~~ 200 (223)
||.||++|-+-.|+..+
T Consensus 25 vs~DGL~ia~~~p~~~d 41 (119)
T COG2018 25 VSKDGLPIAAELPGNVD 41 (119)
T ss_pred EccCCceEeecCCCccc
Confidence 89999999999999884
No 106
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=21.91 E-value=70 Score=24.29 Aligned_cols=59 Identities=17% Similarity=0.402 Sum_probs=22.3
Q ss_pred chhhhHHHHHHHhhhhhhccCCCccCccccccccccCCccchHHHHhhhhHHHHHhccc
Q 027423 33 LLSVGLVLVGAFLLIGYAFSGSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKAYGDS 91 (223)
Q Consensus 33 llsi~lv~vgailli~Y~ysgsg~~~~~~~~vs~~eg~~sCt~eV~~aiP~LkkaYGds 91 (223)
++-+.+.++.+++++++...+-+......+.|-++.|..-=..|+.+.+-..++.|+..
T Consensus 11 ~~~~~~~iv~~~~~l~~~~~~~~~~~~~~~~vA~V~g~~It~~e~~~~~~~~~~~~~~~ 69 (154)
T PF13624_consen 11 VFKILIGIVLAIFVLAFGIGGCGSGSSNNNVVAKVNGEKITKSELDRRVQRYSRQYQQQ 69 (154)
T ss_dssp ------------------------------EEEEETTEEEEHHHHHHHHHHHHHHTT--
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhccCCCCCEEEEECCEEeCHHHHHHHHHHHHHHHHhH
Confidence 44444445555544442222222212344567888887777888888888888888743
No 107
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=21.74 E-value=80 Score=25.41 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=14.4
Q ss_pred CCCccEEEecccccccChhhhccccccchh
Q 027423 154 AKSFPLVIVSDALDYLSPKYLNKTLPDLAR 183 (223)
Q Consensus 154 ~kSFSlVIVSDaLDyLspryLNkTLPeLaR 183 (223)
+.+|.+||+||.+ |-+...|.|++
T Consensus 117 ~~~~D~IlasDv~------Y~~~~~~~L~~ 140 (173)
T PF10294_consen 117 PHSFDVILASDVL------YDEELFEPLVR 140 (173)
T ss_dssp -SSBSEEEEES--------S-GGGHHHHHH
T ss_pred cccCCEEEEeccc------chHHHHHHHHH
Confidence 3589999999998 33455555544
No 108
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=21.73 E-value=81 Score=27.26 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=24.4
Q ss_pred HHhhhhHHHHHhccccceeeeecCCcchhhhhcc
Q 027423 77 IQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLL 110 (223)
Q Consensus 77 V~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LL 110 (223)
+.++-|+|+ ++|...+++.|+||--..-..||+
T Consensus 142 ~~~~~~~l~-~~~~~~~~~~~~G~~g~a~~~Kl~ 174 (299)
T PRK12490 142 YDRLEPVFK-ALAPEGPGYVHAGPVGSGHFLKMV 174 (299)
T ss_pred HHHHHHHHH-HhcCcCCcEEEECCcCHHHHHHHH
Confidence 566778887 778766799999986665555554
No 109
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=21.60 E-value=2.9e+02 Score=23.67 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=68.6
Q ss_pred hhhhHHHHHhc-cccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhh-hhcc-----eeeeeec-CC
Q 027423 79 RAIPILKKAYG-DSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLV-HKGI-----VRVADIK-FP 149 (223)
Q Consensus 79 ~aiP~LkkaYG-dsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLV-rKGi-----VRvADIk-fp 149 (223)
.+.+.+-+... ....+||-||-.+-.+.-.+++.- +.++-++ |++.+-..++.-+ +.|+ +...|+- .+
T Consensus 136 ~~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~---D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 136 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL---NLPGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred hHHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEE---ecHHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 34554544443 456799999999988887888774 3455555 4444444444332 2343 2345642 34
Q ss_pred CCCCCCCccEEEecccccccChhhhccccccchhh-ccCceEEEee
Q 027423 150 LPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGVLIFAG 194 (223)
Q Consensus 150 LPYR~kSFSlVIVSDaLDyLspryLNkTLPeLaRv-sadglViF~G 194 (223)
+| .+.+|+++..|-..++....+-|-++.|+ ...|.+++.-
T Consensus 213 ~~----~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 213 YP----EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CC----CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 43 47999999999888887666667777654 4467777663
No 110
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.59 E-value=63 Score=26.38 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=8.5
Q ss_pred HHHHHhhhhhhc
Q 027423 40 LVGAFLLIGYAF 51 (223)
Q Consensus 40 ~vgailli~Y~y 51 (223)
++|.||||.|+-
T Consensus 77 vIg~Illi~y~i 88 (122)
T PF01102_consen 77 VIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888876
No 111
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=20.90 E-value=29 Score=29.12 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=23.5
Q ss_pred CCCCCCCCCccEEEe-cccccccChhhhccccccchhhccCceEEEeecCcc
Q 027423 148 FPLPYRAKSFPLVIV-SDALDYLSPKYLNKTLPDLARVASDGVLIFAGISSM 198 (223)
Q Consensus 148 fpLPYR~kSFSlVIV-SDaLDyLspryLNkTLPeLaRvsadglViF~G~P~q 198 (223)
+--.|||++|+=++. .++.+.|..-.-|+.+| .++|.|-||-
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~---------~lll~Gp~Gt 47 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSPNLP---------HLLVQGPPGS 47 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCc---------eEEEECCCCC
Confidence 445699999986664 33333332211121111 4789999984
No 112
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=20.73 E-value=1.2e+02 Score=23.07 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.3
Q ss_pred CCccEEEecccccccChhhhccccccchh
Q 027423 155 KSFPLVIVSDALDYLSPKYLNKTLPDLAR 183 (223)
Q Consensus 155 kSFSlVIVSDaLDyLspryLNkTLPeLaR 183 (223)
..+.+|+.-|+=..+.|.+|.+.+..+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 45889999999999999999999988764
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=20.55 E-value=2.3e+02 Score=24.78 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=39.8
Q ss_pred ceeeeecCCcchhhhhccccc-cccccccccc--cccchhHHHHhhhh--hcceeeeeecCCCCCCCCCccEEEe
Q 027423 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPY--DIEDADARCKSLVH--KGIVRVADIKFPLPYRAKSFPLVIV 162 (223)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPy--diedad~~CKsLVr--KGiVRvADIkfpLPYR~kSFSlVIV 162 (223)
.+||-+|-.|..+.-.|.+.- ..+..|||.. -++-+..|++..-- +=-+..+|+--++| ..+|++||.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEE
Confidence 579999999987766666543 3566676543 23445555543210 11234567643443 458998875
No 114
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=20.50 E-value=55 Score=26.31 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=23.0
Q ss_pred hhhhccccccchhhcc-CceEEEeecCcch
Q 027423 171 PKYLNKTLPDLARVAS-DGVLIFAGISSMF 199 (223)
Q Consensus 171 pryLNkTLPeLaRvsa-dglViF~G~P~q~ 199 (223)
.--+|+|+++|-+... +..||+.|--.+-
T Consensus 71 sTlvN~Ti~~iL~~~~~~~~vil~GpS~~~ 100 (147)
T PF04016_consen 71 STLVNGTIDDILELARNAREVILYGPSAPL 100 (147)
T ss_dssp HHCCTTTHHHHHHHTTTSSEEEEESCCGGS
T ss_pred eeeecCCHHHHHHhCccCCeEEEEecCchh
Confidence 3458999999988888 8889999865544
Done!