BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027424
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/223 (86%), Positives = 212/223 (95%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
MAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE
Sbjct: 242 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE 301
Query: 61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP
Sbjct: 302 VYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLP 361
Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSH
Sbjct: 362 DHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421
Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
ASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD A +T PL
Sbjct: 422 ASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 464
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 202 bits (514), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 147/212 (69%), Gaps = 1/212 (0%)
Query: 8 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 66
L++VDN+ SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++ + + +AK + +++
Sbjct: 116 LVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKD 175
Query: 67 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
G+ ++P D W+ RG T+ +RV++ +NAQK+AEFL H VKKV Y GLP+HPGHE
Sbjct: 176 ITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHE 235
Query: 127 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 186
+ Q K GS+++F L +K V++ S+ VS G +SLI P M+HA +P E
Sbjct: 236 IAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKE 295
Query: 187 VRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
R+A GLT++L+R+SVG E+V D+I DL +AL
Sbjct: 296 EREAAGLTDNLIRLSVGCENVQDIIDDLKQAL 327
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 199 bits (507), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 149/221 (67%), Gaps = 4/221 (1%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER--LA 58
+A HG L +VDN+ SP+L RPL LGAD+V+HSATK++ GHSD++ G+ AV G+ LA
Sbjct: 177 IARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGI-AVVGDNAELA 235
Query: 59 KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
+++ FLQN+ G PFD ++ LRG+KT+ LR+ +NA +A++L +HP ++KV Y G
Sbjct: 236 EQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPG 295
Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
L HP H L Q G G ++S L G +K E T+ F++ S G V+SL++ P
Sbjct: 296 LASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAV 355
Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
M+HASIPV R+ G+++ LVR+SVGIED+ DL DL++AL
Sbjct: 356 MTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL 396
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 147/223 (65%), Gaps = 6/223 (2%)
Query: 3 HAHG--ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
HA G +L+VDN+ +SP +S PL GADIV+HSATK+I GHSDV+ GVLA + L +
Sbjct: 167 HAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYER 226
Query: 61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGL 119
L FLQNA G+ +PFD W+ RG+KT+ LRV + +A KIAEFLA+ V VNY GL
Sbjct: 227 LQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGL 286
Query: 120 PEHPGHELHYSQAKGA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC 176
HP +++ Q + A G ++SF + G + +T+ F++ S G ++SL+ +P
Sbjct: 287 KTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPA 346
Query: 177 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
M+H IP E R+A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 347 VMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALK 389
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 194 bits (493), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 143/221 (64%), Gaps = 2/221 (0%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+AH GALL+VDN+ MSP +PL+LGADIV+HS TK+I GH DV+ G++ K E + +
Sbjct: 174 IAHQQGALLVVDNTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61 LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
+ L++ G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL
Sbjct: 234 RFVGLKDITGGXMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
HP +EL Q G ++SF + G L + ++ + + + VS G ++LI P M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
+H+ + E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 142/221 (64%), Gaps = 2/221 (0%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+AH GALL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + +
Sbjct: 174 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61 LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
+ L++ G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL
Sbjct: 234 RFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
HP +EL Q G ++SF + G L + ++ + + + VS G ++LI P M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
+H+ + E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 142/221 (64%), Gaps = 2/221 (0%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+AH GALL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + +
Sbjct: 174 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61 LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
+ L++ G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL
Sbjct: 234 RFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
HP +EL Q G ++SF + G L + ++ + + + VS G ++LI P M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
+H+ + E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 142/221 (64%), Gaps = 2/221 (0%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+AH GALL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + +
Sbjct: 174 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61 LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
+ L++ G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL
Sbjct: 234 RFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
HP +EL Q G ++SF + G L + ++ + + + VS G ++LI P M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
+H+ + E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 142/221 (64%), Gaps = 2/221 (0%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+AH GALL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + +
Sbjct: 174 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61 LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
+ L++ G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL
Sbjct: 234 RFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
HP +EL Q G ++SF + G L + ++ + + + VS G ++LI P M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
+H+ + E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 4/213 (1%)
Query: 7 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
A +LVDN+ SP L +PL LGAD+V+HS T +I GHSDV+ G L E L + FLQN
Sbjct: 182 AKVLVDNTFASPALQQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQN 241
Query: 67 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
G+ PFD ++ +RG+KT+ LR+++ +NA +AEFLA HP + V Y GLP HPGH
Sbjct: 242 GAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHA 301
Query: 127 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 185
+ Q +G G ++S + ++ + T F + S GSV+SLI P M+HAS
Sbjct: 302 VAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAG 361
Query: 186 EVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
+ + +DLVR+SVGIEDV DL+ DL +AL
Sbjct: 362 SQLE---VPDDLVRLSVGIEDVADLLDDLKQAL 391
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 187 bits (474), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 137/219 (62%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+ H GA L+VD + SP +PLELGADI +HS +K+I GH DV+ GV + K
Sbjct: 169 VCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIAT 228
Query: 61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
+ F + GS +AP D ++C RG+KT+ +R++ +N K+A+FL H ++ KVN+ GL
Sbjct: 229 IKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLE 288
Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
PGH++ Q G GS F S +K ++E K ++ VS G V +LI P M+H
Sbjct: 289 SFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTH 348
Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
A++P + + +G+T +LVRISVGIE+V+D+I+DL +AL
Sbjct: 349 AAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE 387
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 136/219 (62%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+ H GA L+VD + SP +PLELGADI +HS + +I GH DV+ GV + K
Sbjct: 169 VCHERGARLVVDATFTSPCFLKPLELGADIALHSVSXYINGHGDVIGGVSSAKTAEDIAT 228
Query: 61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
+ F + GS +AP D ++C RG+KT+ +R++ +N K+A+FL H ++ KVN+ GL
Sbjct: 229 IKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLE 288
Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
PGH++ Q G GS F S +K ++E K ++ VS G V +LI P M+H
Sbjct: 289 SFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTH 348
Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
A++P + + +G+T +LVRISVGIE+V+D+I+DL +AL
Sbjct: 349 AAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE 387
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 148/220 (67%), Gaps = 3/220 (1%)
Query: 2 AHAH-GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK- 59
AH+ G L++ DN+ SP+++ P++ G D+V+HSATK+I GH+DV+AG++ K + L +
Sbjct: 173 AHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQI 232
Query: 60 ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
+ +++ GS ++P D W+ RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G
Sbjct: 233 RMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGF 292
Query: 120 PEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
+H GH++ Q + GS+++F+ S +K +++ K ++ VS G +SLI P M
Sbjct: 293 EDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASM 352
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
+HA +P E R+A G+T+ ++R+SVGIED ++LI+D + L
Sbjct: 353 THAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGL 392
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 133/205 (64%), Gaps = 2/205 (0%)
Query: 1 MAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 59
+ H HG ++LV DN+ MSP RPL LGADI M+SATK++ GHSDV+ G+++V E L
Sbjct: 176 IVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHN 235
Query: 60 ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
L FLQN+ G+ +P DC++C RG+KT+ +R+EK N +A+FL S+P V+KV Y GL
Sbjct: 236 RLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGL 295
Query: 120 PEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
P HP HEL Q G G V ++ G+L ++ ++ K F++ S G +SL +P M
Sbjct: 296 PSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIM 355
Query: 179 SHASIPVEVRQARGLTEDLVRISVG 203
+HAS+ R G+++ L+R+SVG
Sbjct: 356 THASVLKNDRDVLGISDTLIRLSVG 380
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 180 bits (457), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 133/205 (64%), Gaps = 2/205 (0%)
Query: 1 MAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 59
+ H HG ++LV DN+ MSP RPL LGADI M+SATK++ GHSDV+ G+++V E L
Sbjct: 180 IVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHN 239
Query: 60 ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
L FLQN+ G+ +P DC++C RG+KT+ +R+EK N +A+FL S+P V+KV Y GL
Sbjct: 240 RLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGL 299
Query: 120 PEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
P HP HEL Q G G V ++ G+L ++ ++ K F++ S G +SL +P M
Sbjct: 300 PSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIM 359
Query: 179 SHASIPVEVRQARGLTEDLVRISVG 203
+HAS+ R G+++ L+R+SVG
Sbjct: 360 THASVLKNDRDVLGISDTLIRLSVG 384
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 1/220 (0%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+A GA+ +VDN+ +SP L PL LGAD+V+HS T ++ GHSDV+AGV+ K + E
Sbjct: 162 LAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTXYLNGHSDVVAGVVIAKDPDVVTE 221
Query: 61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
L + N G FD ++ LRG++T+ R+E Q NAQ I ++L + P VKK+ + LP
Sbjct: 222 LAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLP 281
Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
E+ GHE+ Q KG G++LSF L G + + F++ S G V+SLIS M+
Sbjct: 282 ENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMT 341
Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
HA + E R A G++E L+RIS GIED DLI+DL+ R
Sbjct: 342 HAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFR 381
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 142/222 (63%), Gaps = 4/222 (1%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+A HGA ++VDN+ +P L RPLELGAD+V+HSATK+++GH D+ AG++ V + L
Sbjct: 175 IARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIV-VGSQALVDR 233
Query: 61 LYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
+ L++ G+ L+P D + +RG+KT+ LR+++ NAQ +AEFLA P+V+ ++Y G
Sbjct: 234 IRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPG 293
Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
L P + L Q G +++F L G + + + + FS VS G +SL P
Sbjct: 294 LASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPAS 353
Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
M+H+S E R G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 354 MTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 141/222 (63%), Gaps = 4/222 (1%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+A HGA ++VDN+ +P L RPLELGAD+V+HSAT +++GH D+ AG++ V + L
Sbjct: 175 IARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDR 233
Query: 61 LYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
+ L++ G+ L+P D + +RG+KT+ LR+++ NAQ +AEFLA P+V+ ++Y G
Sbjct: 234 IRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPG 293
Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
L P + L Q G +++F L G + + + + FS VS G +SL P
Sbjct: 294 LASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPAS 353
Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
M+H+S E R G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 354 MTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 141/222 (63%), Gaps = 4/222 (1%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+A HGA ++VDN+ +P L RPLELGAD+V+HSAT +++GH D+ AG++ V + L
Sbjct: 175 IARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDR 233
Query: 61 LYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
+ L++ G+ L+P D + +RG+KT+ LR+++ NAQ +AEFLA P+V+ ++Y G
Sbjct: 234 IRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPG 293
Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
L P + L Q G +++F L G + + + + FS VS G +SL P
Sbjct: 294 LASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPAS 353
Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
M+H+S E R G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 354 MTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 130/219 (59%), Gaps = 2/219 (0%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+ H GAL+ +D + +P+ + L LGAD+V+HSATKF+ GH+DV+AG ++ +L E
Sbjct: 225 LCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCIS-GPLKLVSE 283
Query: 61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
+ L + G L P ++ +RG+KT+ LRV++Q A ++AE L +HP+V+ V Y GL
Sbjct: 284 IRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQ 343
Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
HP H + Q G G +SF + G L + V+ K I SFG +S++ P MS
Sbjct: 344 SHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMS 403
Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
+ + R G+ ++LVR S G+ED +DL +D+ +AL
Sbjct: 404 YWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 442
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 133/223 (59%), Gaps = 5/223 (2%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+AHA GA +++DN +P+L + LG D+V++S T I G V+ G + E +
Sbjct: 191 LAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGRVLGGAILGDREYIDGP 250
Query: 61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
+ L G ++ F+ W+ L+G++T+A+RV+ +AQ+IAEFL HP V+ V Y LP
Sbjct: 251 VQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLP 310
Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----VVETTKYFSITVSFGSVKSLISMP 175
HP ++L Q G G+V++F L ++K V++ + I+ + G KSL++ P
Sbjct: 311 SHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHP 370
Query: 176 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
+H ++ E R A GL + +VRISVG+ED +DLI+D+D+AL
Sbjct: 371 ATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 126/251 (50%), Gaps = 34/251 (13%)
Query: 2 AHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL---------- 50
A G L+VDN+ M L RPL GA +V HS TK++ GH V+AG +
Sbjct: 170 AREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEG 229
Query: 51 -----------AVKGERLAK---ELYFLQNA-------EGSGLAPFDCWICLRGVKTMAL 89
G RL + EL F+ A +G L PF+ W+ L G++T++L
Sbjct: 230 GRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSL 289
Query: 90 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG-AGSVLSF-LTGSLA 147
R E+ +N +A +L P+V VNY GLP HP H+ KG G+VL+F L G
Sbjct: 290 RAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYE 349
Query: 148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV 207
+K + K S + G ++L P +H+ + E + G++ ++VR+SVG+E V
Sbjct: 350 AAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHV 409
Query: 208 NDLISDLDKAL 218
DL ++L +AL
Sbjct: 410 EDLKAELKEAL 420
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 29/246 (11%)
Query: 1 MAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAG-VLAVKGERLA 58
+A G L+VDN+ + L RPL GA +V+ S T + +GH V+ G VL+ + E
Sbjct: 165 LAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTXWASGHGSVLGGAVLSRETELWR 224
Query: 59 KELYFLQ--------------------------NAEGSGLAPFDCWICLRGVKTMALRVE 92
FLQ + G L+PF+ ++ +G++T+ALRV
Sbjct: 225 NYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVA 284
Query: 93 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV 152
+ + A+ +AE L HP+VK + Y GLPE P H G +L+ G L +
Sbjct: 285 RMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRF 344
Query: 153 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 212
+ + + G ++L+ P +H+ + E R G+T LVR+SVG+ED DL++
Sbjct: 345 LGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLA 403
Query: 213 DLDKAL 218
++AL
Sbjct: 404 LFEEAL 409
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 7 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M G AV R ++L
Sbjct: 180 AIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAY 238
Query: 67 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
G + +I RG++T+ +R+ + +++ K+AE+LA HP+V +VN+ LP GHE
Sbjct: 239 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 298
Query: 127 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 183
G+ + SF+ ++ + ++ FS+ S+G +SLI A+
Sbjct: 299 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 351
Query: 184 PVEVRQARGLTE-----DLVRISVGIEDVNDLISDLD 215
P + R E L+R+ +G+EDV+DLI+DLD
Sbjct: 352 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 7 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M G AV R ++L
Sbjct: 200 AIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAY 258
Query: 67 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
G + +I RG++T+ +R+ + +++ K+AE+LA HP+V +VN+ LP GHE
Sbjct: 259 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 318
Query: 127 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 183
G+ + SF+ ++ + ++ FS+ S+G +SLI A+
Sbjct: 319 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 371
Query: 184 PVEVRQARGLTE-----DLVRISVGIEDVNDLISDLD 215
P + R E L+R+ +G+EDV+DLI+DLD
Sbjct: 372 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 408
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 117/217 (53%), Gaps = 16/217 (7%)
Query: 7 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
A++++DN+ + VL + L+ G D+ + +AT ++ GHSD M G AV R ++L
Sbjct: 180 AIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGT-AVCNARCWEQLRENAY 238
Query: 67 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
G + +I RG++T+ +R+ + +++ K+AE+LA HP+V +VN+ LP GHE
Sbjct: 239 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 298
Query: 127 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 183
G+ + SF+ ++ + ++ FS+ S+G +SLI A+
Sbjct: 299 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 351
Query: 184 PVEVRQARGLTE-----DLVRISVGIEDVNDLISDLD 215
P + R E L+R+ +G+EDV+DLI+DLD
Sbjct: 352 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 120/238 (50%), Gaps = 20/238 (8%)
Query: 1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
+ HA G L+VD ++ P L LG DI + S+TKFI+G + GVL G K
Sbjct: 192 VVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKS 251
Query: 61 L-------------YFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 100
L FL A G L+P + ++ G++TMALR+E+ NAQ+
Sbjct: 252 LPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQE 311
Query: 101 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 160
+A +L S P+VK VN+ LP+ P + + Q + AGS+L+F S S ++ K
Sbjct: 312 LAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIR 371
Query: 161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
+ KSLI P + +A E R ++ ++R+SVGIE++ DL D+ +AL
Sbjct: 372 RATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The
Red Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The
Red Alga, Porphyridium Purpureum R-1
Length = 496
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 15 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 74
+MS + + +EL A +V A + + G S++ A A + E L ++ F N +G +P
Sbjct: 9 VMSDLEKKFIELEAKLVAQPAGQAMPGKSNIFANNEAWRQEMLKQDPEFF-NRLANGQSP 67
Query: 75 FDCWI 79
WI
Sbjct: 68 EYLWI 72
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 87 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL 146
+++RVE QKI E KK LP+ P + G+G +++ G +
Sbjct: 27 VSVRVEGTASQGQKIPE------EFKKFFGDDLPDQPAQPF---EGLGSGVIINASKGYV 77
Query: 147 ALSKHVVETTKYFSITVSFG 166
+ HV+ + SI ++ G
Sbjct: 78 LTNNHVINQAQKISIQLNDG 97
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 87 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL 146
+++RVE QKI E KK LP+ P + G+G +++ G +
Sbjct: 27 VSVRVEGTASQGQKIPE------EFKKFFGDDLPDQPAQPF---EGLGSGVIINASKGYV 77
Query: 147 ALSKHVVETTKYFSITVSFG 166
+ HV+ + SI ++ G
Sbjct: 78 LTNNHVINQAQKISIQLNDG 97
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 87 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL 146
+++RVE QKI E KK LP+ P + G+G +++ G +
Sbjct: 27 VSVRVEGTASQGQKIPE------EFKKFFGDDLPDQPAQPF---EGLGSGVIINASKGYV 77
Query: 147 ALSKHVVETTKYFSITVSFG 166
+ HV+ + SI ++ G
Sbjct: 78 LTNNHVINQAQKISIQLNDG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,067,263
Number of Sequences: 62578
Number of extensions: 222629
Number of successful extensions: 667
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 43
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)