Query 027426
Match_columns 223
No_of_seqs 148 out of 1086
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 1.3E-52 2.9E-57 344.2 27.2 212 8-223 1-212 (212)
2 cd03759 proteasome_beta_type_3 100.0 8.4E-49 1.8E-53 317.8 26.3 192 14-218 2-194 (195)
3 cd03758 proteasome_beta_type_2 100.0 4.5E-47 9.7E-52 307.3 25.5 190 15-217 1-192 (193)
4 cd03761 proteasome_beta_type_5 100.0 8E-47 1.7E-51 304.6 25.6 187 16-216 1-187 (188)
5 cd03760 proteasome_beta_type_4 100.0 6.7E-47 1.5E-51 307.1 25.1 190 14-216 1-195 (197)
6 COG0638 PRE1 20S proteasome, a 100.0 5E-47 1.1E-51 315.3 23.5 192 12-217 27-221 (236)
7 TIGR03634 arc_protsome_B prote 100.0 3.7E-46 8.1E-51 299.9 25.2 185 15-213 1-185 (185)
8 cd03764 proteasome_beta_archea 100.0 1.2E-45 2.7E-50 297.6 25.5 187 16-216 1-187 (188)
9 KOG0179 20S proteasome, regula 100.0 6E-46 1.3E-50 291.7 22.6 221 1-223 15-235 (235)
10 cd03762 proteasome_beta_type_6 100.0 3.2E-45 6.9E-50 295.2 25.9 187 16-216 1-187 (188)
11 cd01912 proteasome_beta protea 100.0 8.5E-45 1.8E-49 292.7 26.0 188 16-216 1-188 (189)
12 cd03763 proteasome_beta_type_7 100.0 2.3E-44 4.9E-49 290.5 25.5 187 16-217 1-187 (189)
13 PTZ00488 Proteasome subunit be 100.0 2.1E-44 4.5E-49 301.2 25.5 191 12-216 36-226 (247)
14 TIGR03690 20S_bact_beta protea 100.0 1.1E-43 2.5E-48 292.6 25.2 190 14-216 1-202 (219)
15 cd03765 proteasome_beta_bacter 100.0 1.1E-43 2.3E-48 294.2 25.0 185 16-215 1-204 (236)
16 cd03750 proteasome_alpha_type_ 100.0 1.1E-43 2.5E-48 294.1 22.9 189 11-215 23-216 (227)
17 cd03752 proteasome_alpha_type_ 100.0 1.6E-43 3.4E-48 290.7 22.7 185 11-208 25-213 (213)
18 PTZ00246 proteasome subunit al 100.0 3.8E-43 8.2E-48 295.3 23.1 189 11-212 27-219 (253)
19 cd03755 proteasome_alpha_type_ 100.0 5.2E-43 1.1E-47 286.4 22.2 181 11-208 23-207 (207)
20 cd03749 proteasome_alpha_type_ 100.0 1.2E-42 2.6E-47 285.0 23.1 184 11-209 23-211 (211)
21 TIGR03633 arc_protsome_A prote 100.0 1.2E-42 2.6E-47 287.5 23.3 193 11-219 25-221 (224)
22 cd03754 proteasome_alpha_type_ 100.0 9.6E-43 2.1E-47 286.3 21.4 183 13-208 27-215 (215)
23 PF00227 Proteasome: Proteasom 100.0 2.9E-42 6.4E-47 277.7 23.3 184 12-208 1-190 (190)
24 cd03751 proteasome_alpha_type_ 100.0 1.6E-42 3.5E-47 284.3 21.8 183 11-208 26-212 (212)
25 PRK03996 proteasome subunit al 100.0 4E-42 8.6E-47 287.3 22.8 192 11-218 32-227 (241)
26 KOG0176 20S proteasome, regula 100.0 1.1E-42 2.4E-47 271.1 16.7 189 11-215 30-228 (241)
27 cd01911 proteasome_alpha prote 100.0 5.7E-42 1.2E-46 280.6 21.7 183 11-208 23-209 (209)
28 cd01906 proteasome_protease_Hs 100.0 1.7E-41 3.7E-46 271.5 23.5 180 16-208 1-182 (182)
29 cd03756 proteasome_alpha_arche 100.0 1E-41 2.2E-46 279.5 22.3 183 11-209 24-210 (211)
30 cd03753 proteasome_alpha_type_ 100.0 3.4E-41 7.3E-46 276.8 22.3 182 11-208 23-213 (213)
31 TIGR03691 20S_bact_alpha prote 100.0 5.5E-40 1.2E-44 271.5 22.9 181 11-212 23-211 (228)
32 KOG0178 20S proteasome, regula 100.0 3.5E-40 7.6E-45 259.4 17.2 194 11-216 27-224 (249)
33 KOG0183 20S proteasome, regula 100.0 7.6E-39 1.6E-43 252.5 14.5 190 11-215 26-220 (249)
34 KOG0177 20S proteasome, regula 100.0 3.8E-38 8.3E-43 244.2 18.1 190 15-217 1-192 (200)
35 KOG0181 20S proteasome, regula 100.0 5.5E-38 1.2E-42 244.3 14.5 190 11-216 28-221 (233)
36 KOG0180 20S proteasome, regula 100.0 3.3E-37 7.1E-42 235.7 18.3 203 8-223 1-204 (204)
37 KOG0185 20S proteasome, regula 100.0 1E-37 2.2E-42 249.1 16.2 203 3-216 30-235 (256)
38 KOG0184 20S proteasome, regula 100.0 1.9E-37 4E-42 245.8 16.3 187 10-211 29-219 (254)
39 KOG0174 20S proteasome, regula 100.0 4.3E-37 9.4E-42 239.1 17.3 196 11-220 15-210 (224)
40 KOG0173 20S proteasome, regula 100.0 8.9E-36 1.9E-40 240.2 18.1 195 6-215 28-222 (271)
41 KOG0182 20S proteasome, regula 100.0 7.4E-35 1.6E-39 229.5 18.5 199 8-219 29-231 (246)
42 KOG0175 20S proteasome, regula 100.0 6.1E-35 1.3E-39 235.9 17.0 189 13-215 69-257 (285)
43 PRK05456 ATP-dependent proteas 100.0 2E-33 4.4E-38 222.4 19.9 167 15-207 1-171 (172)
44 KOG0863 20S proteasome, regula 100.0 1.5E-33 3.2E-38 224.7 16.0 187 11-212 28-219 (264)
45 cd01913 protease_HslV Protease 100.0 8.1E-33 1.8E-37 217.7 19.7 165 16-207 1-170 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 2.5E-32 5.5E-37 214.9 19.4 166 16-207 1-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 100.0 4.1E-29 8.8E-34 194.4 21.4 161 16-190 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.8 1.4E-17 3.1E-22 126.9 12.6 170 14-209 3-176 (178)
49 COG3484 Predicted proteasome-t 99.5 1.8E-13 3.8E-18 108.3 12.8 188 15-217 1-207 (255)
50 PF09894 DUF2121: Uncharacteri 97.4 0.022 4.9E-07 45.5 16.2 154 15-211 1-180 (194)
51 COG4079 Uncharacterized protei 95.7 0.95 2.1E-05 37.7 14.6 157 15-211 1-181 (293)
52 KOG3361 Iron binding protein i 81.5 1.9 4.2E-05 32.5 3.3 43 128-183 71-113 (157)
53 COG3193 GlcG Uncharacterized p 63.9 21 0.00045 27.3 5.2 36 174-213 6-41 (141)
54 PRK09732 hypothetical protein; 62.2 23 0.0005 26.8 5.2 38 174-215 5-42 (134)
55 PF03928 DUF336: Domain of unk 55.3 17 0.00037 27.1 3.5 38 174-215 1-38 (132)
56 COG4245 TerY Uncharacterized p 43.7 47 0.001 26.9 4.4 42 179-220 21-62 (207)
57 TIGR02261 benz_CoA_red_D benzo 31.5 89 0.0019 26.5 4.5 29 116-148 104-135 (262)
58 PRK02487 hypothetical protein; 31.3 1.9E+02 0.0041 22.4 6.1 35 173-212 20-54 (163)
59 PF04539 Sigma70_r3: Sigma-70 30.8 91 0.002 20.5 3.8 29 71-99 3-31 (78)
60 COG1754 Uncharacterized C-term 30.7 54 0.0012 28.2 3.0 99 85-205 50-151 (298)
61 PF14555 UBA_4: UBA-like domai 30.5 55 0.0012 19.2 2.3 25 144-184 11-35 (43)
62 PF07499 RuvA_C: RuvA, C-termi 27.0 40 0.00088 20.3 1.3 32 144-187 13-44 (47)
63 PRK13599 putative peroxiredoxi 26.8 1.7E+02 0.0037 23.8 5.3 61 124-184 119-193 (215)
64 TIGR03192 benz_CoA_bzdQ benzoy 24.2 1.6E+02 0.0036 25.4 4.9 31 114-148 130-163 (293)
65 PF11211 DUF2997: Protein of u 23.4 1.2E+02 0.0025 18.7 2.8 32 128-159 3-34 (48)
66 TIGR02259 benz_CoA_red_A benzo 21.9 1.6E+02 0.0035 26.8 4.6 29 116-148 274-305 (432)
67 PF04485 NblA: Phycobilisome d 21.9 1.9E+02 0.0042 18.2 3.6 23 174-196 20-42 (53)
68 COG0822 IscU NifU homolog invo 21.8 2.9E+02 0.0062 21.3 5.5 55 125-193 43-98 (150)
69 PF14804 Jag_N: Jag N-terminus 20.6 1.1E+02 0.0025 19.0 2.5 29 175-210 4-32 (52)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-52 Score=344.17 Aligned_cols=212 Identities=61% Similarity=0.952 Sum_probs=200.6
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027426 8 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
|+|++++|+|+|||+++||||||+|++.++|.++..++.+|||+|+++++|++||..+|++.+.++++.+++.|++.+|+
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK 80 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 79999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 88 QMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+++++.+++++++.+|++|.+||+|++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|++.+|..
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~- 159 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN- 159 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc-
Confidence 9999999999999999988889999999999998788999999999999999999999999999999999986322211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027426 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 223 (223)
Q Consensus 168 ~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
.|+++||++||++++.+||+.+.+||..++++++|++|+++|++++.+++|+|
T Consensus 160 ---~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~ 212 (212)
T cd03757 160 ---VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD 212 (212)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence 24589999999999999999999999999999999999999999999999998
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.4e-49 Score=317.83 Aligned_cols=192 Identities=26% Similarity=0.466 Sum_probs=184.0
Q ss_pred CCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 027426 14 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPG 93 (223)
Q Consensus 14 ~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (223)
+|+|+|||+++||||||+|++.+++..+..++.+|||+|+++++|++||..+|++.+++++|.+++.|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999987776778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeC-eEEEccchhhHHHHHhcccCCCCCCCCCCCCC
Q 027426 94 MAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 94 la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~ 172 (223)
+++++++.+|++|.+||+|++|+||||++++|+||.+||+|++..+. ++|+|+|+++++++||+.|+
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~------------ 149 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWR------------ 149 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccC------------
Confidence 99999999999888999999999999988889999999999998888 99999999999999999954
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEe
Q 027426 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 218 (223)
Q Consensus 173 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 218 (223)
|+||.+||++++++||+.+.+||..++++++|++|+++|++++.+
T Consensus 150 -~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 150 -PDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 799999999999999999999999999999999999999988775
No 3
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.5e-47 Score=307.25 Aligned_cols=190 Identities=27% Similarity=0.399 Sum_probs=180.2
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
++|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++|++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 ~~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 80 (193)
T cd03758 1 METLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAA 80 (193)
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 37999999999999999999999888989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh-c-CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCC
Q 027426 95 AQLLSNTLYYK-R-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 95 a~~l~~~~~~~-r-~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~ 172 (223)
++++++.+|.+ | .|||++++|++|||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 81 a~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~------------ 148 (193)
T cd03758 81 ANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK------------ 148 (193)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccC------------
Confidence 99999999543 3 479999999999997777999999999999999999999999999999999964
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 173 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
|+||++||++++.+||+.+.+||..++++++|++|+++|++..+
T Consensus 149 -~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~ 192 (193)
T cd03758 149 -PDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDLE 192 (193)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeCC
Confidence 79999999999999999999999999999999999999998755
No 4
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8e-47 Score=304.60 Aligned_cols=187 Identities=25% Similarity=0.319 Sum_probs=179.6
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|++.++|.++.+++.+|||+|+++++|++||+.+|++.+++++|.+++.|+++++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++++|.+|..||+|++|+||||+ .+|+||.+||+|++.+++++|+|+|+++++++||+.| +|+
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~-------------~~~ 146 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGY-------------RYD 146 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcC-------------CCC
Confidence 99999999988889999999999996 4599999999999999999999999999999999995 479
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||++||++++.+||+.+.+||..++++++|++|+++|++..
T Consensus 147 ~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 147 LSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 99999999999999999999999999999999999999753
No 5
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-47 Score=307.14 Aligned_cols=190 Identities=29% Similarity=0.393 Sum_probs=180.4
Q ss_pred CCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHH-HHHHhcCCCCCHH
Q 027426 14 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHL-IYQHQHNKQMSCP 92 (223)
Q Consensus 14 ~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 92 (223)
.|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+++++|+++|+.+|++.+++++|.+++ .+++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 389999999999999999999998888888999999999999999999999999999999999987 5778899999999
Q ss_pred HHHHHHHHHHhhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCC
Q 027426 93 GMAQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 93 ~la~~l~~~~~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~ 170 (223)
.+++++++.+|+++ .|||+|++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~---------- 150 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWE---------- 150 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcC----------
Confidence 99999999999886 799999999999997677999999999999999999999999999999999965
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 171 DAVT--PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 171 ~~~~--~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
+ +||++||++++.+||+.+.+||..++++++|++|+++|+++.
T Consensus 151 ---~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 195 (197)
T cd03760 151 ---KKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE 195 (197)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence 6 999999999999999999999999999999999999998764
No 6
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-47 Score=315.28 Aligned_cols=192 Identities=32% Similarity=0.478 Sum_probs=182.0
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
...|+|+|||+++||||||+|+|.++|.++..++.+|||+|+|||+|++||+.+|++.++++++.+++.|++.+++++++
T Consensus 27 ~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v 106 (236)
T COG0638 27 KRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISV 106 (236)
T ss_pred HcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34469999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC--CCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCC
Q 027426 92 PGMAQLLSNTLYYKRF--FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPA 169 (223)
Q Consensus 92 ~~la~~l~~~~~~~r~--rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~ 169 (223)
+.+++.+++++|.++. |||++++|+||+|+ ++|+||.+||+|++.++++.|+|+|++.++++||+.|+
T Consensus 107 ~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~--------- 176 (236)
T COG0638 107 EALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYR--------- 176 (236)
T ss_pred HHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhcc---------
Confidence 9999999999988776 99999999999998 77999999999999999999999999999999999975
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC-CCeEEEE
Q 027426 170 QDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK-GGIHREY 217 (223)
Q Consensus 170 ~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~-~g~~~~~ 217 (223)
++|+++||++++++||..+.+||..++++++|++|++ +|++...
T Consensus 177 ----~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~ 221 (236)
T COG0638 177 ----EDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLD 221 (236)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcC
Confidence 7999999999999999999999998899999999999 6776544
No 7
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.7e-46 Score=299.87 Aligned_cols=185 Identities=32% Similarity=0.536 Sum_probs=178.6
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+|+|||+++||||||+|++.++|.++..++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCC
Q 027426 95 AQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 174 (223)
Q Consensus 95 a~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~ 174 (223)
++++++.+|.++.|||+|++|+||+|+++ |+||.+||+|++.+++++|+|+++++++++||+.| ++
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~-------------~~ 146 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEG-PHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEY-------------RE 146 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCC-CEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcC-------------CC
Confidence 99999999888899999999999999754 99999999999999999999999999999999995 47
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027426 175 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 213 (223)
Q Consensus 175 ~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
+||++||++++++||+.+.+||..++++++|++|+++|+
T Consensus 147 ~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 147 DMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 999999999999999999999999999999999999985
No 8
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-45 Score=297.59 Aligned_cols=187 Identities=33% Similarity=0.500 Sum_probs=179.9
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|++.++|.++..++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++.+|.++.|||+|++|+||+|+ ++|+||.+||+|++.+++++|+|+|+++++++||+.| +++
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~-------------~~~ 146 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEY-------------KED 146 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcC-------------CCC
Confidence 99999999888999999999999997 5699999999999999999999999999999999995 479
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
|+++||++++++||+.+.+||..++++++|++++++|++..
T Consensus 147 ~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 147 MTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 99999999999999999999999999999999999997754
No 9
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-46 Score=291.68 Aligned_cols=221 Identities=57% Similarity=0.888 Sum_probs=212.3
Q ss_pred CCCCCCCcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHH
Q 027426 1 MTKQHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLI 80 (223)
Q Consensus 1 ~~~~~~~~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 80 (223)
+|++|..|+|+..+|+|+|||.+.|+.|+|+|+|.++|..|.++..+|||+++|+++++.+|..+|+..|...++...+.
T Consensus 15 ~~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~ 94 (235)
T KOG0179|consen 15 KTMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQ 94 (235)
T ss_pred CccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccC
Q 027426 81 YQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 160 (223)
Q Consensus 81 ~~~~~~~~~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~ 160 (223)
|+..+++.|+++..|+.|+..+|.+|+.||.+..+++|+|++|++.+|..||.|++.+..+.|-|+++.+++++|+...+
T Consensus 95 Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~ 174 (235)
T KOG0179|consen 95 YEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIG 174 (235)
T ss_pred HhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027426 161 SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 223 (223)
Q Consensus 161 ~~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
.++|..+ ..-++.+|+++|+.++..++..|.+||+.+|.+++|++++++|++.+.+++|+|
T Consensus 175 ~kn~~~e--~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 175 HKNQNLE--NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred CcCcccc--cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence 8887542 223568999999999999999999999999999999999999999999999998
No 10
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-45 Score=295.19 Aligned_cols=187 Identities=25% Similarity=0.330 Sum_probs=178.5
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|++.++|.++..++.+|||+|+++++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++.+|.+| +||+|++|+||+|++.+|+||.+||+|++.+++++++|+++++++++||+.| +++
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~-------------~~~ 146 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANY-------------KPG 146 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcC-------------CCC
Confidence 99999998775 7899999999999766799999999999999999999999999999999995 479
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||++||++++++||+.+.+||+.++++++|++|+++|++++
T Consensus 147 ~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~~ 187 (188)
T cd03762 147 MTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVERK 187 (188)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEEe
Confidence 99999999999999999999999999999999999999754
No 11
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.5e-45 Score=292.69 Aligned_cols=188 Identities=36% Similarity=0.580 Sum_probs=180.5
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|++.++|..+..++.+|||+|++++++++||+.+|++.++++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++.+|.++.+||++++|+||+|++++|+||.+||+|++.+++++|+|+++++++++||+.| +|+
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~-------------~~~ 147 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGY-------------KPD 147 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhcc-------------CCC
Confidence 9999999988778999999999999867799999999999999999999999999999999995 479
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||++||++++.+||+.+.++|..++++++|++|+++|++..
T Consensus 148 ~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 148 MTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 99999999999999999999999999999999999998753
No 12
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-44 Score=290.53 Aligned_cols=187 Identities=23% Similarity=0.335 Sum_probs=177.8
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++.+|..+ .||+|++|+||+|+++ |+||.+||+|++.+++++|+|+++++++++||++| +|+
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~-------------~~~ 145 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRY-------------KPD 145 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhc-------------CCC
Confidence 99999987654 4999999999999654 99999999999999999999999999999999995 489
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
||++||++++++||+.+.+||..++++++|++|+++|+++.+
T Consensus 146 ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~ 187 (189)
T cd03763 146 MTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLR 187 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEec
Confidence 999999999999999999999999999999999999998754
No 13
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2.1e-44 Score=301.18 Aligned_cols=191 Identities=24% Similarity=0.305 Sum_probs=179.9
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
.++|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++++++++||+.+|++.+.+++|.+++.|++++|+++++
T Consensus 36 ~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv 115 (247)
T PTZ00488 36 FAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISV 115 (247)
T ss_pred cCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 45699999999999999999999998889989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCC
Q 027426 92 PGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 92 ~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
+.+++++++++|.+|..|+.+++|+||||+++ |+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 116 ~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k----------- 183 (247)
T PTZ00488 116 AAASKILANIVWNYKGMGLSMGTMICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFK----------- 183 (247)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCc-----------
Confidence 99999999999888755666778999999655 999999999999999999999999999999999965
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 172 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 172 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
++||.+||++++++||+.+.+||..++++++|++|+++|++..
T Consensus 184 --~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l 226 (247)
T PTZ00488 184 --WDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKI 226 (247)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEEC
Confidence 7999999999999999999999999999999999999997644
No 14
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.1e-43 Score=292.56 Aligned_cols=190 Identities=25% Similarity=0.366 Sum_probs=175.9
Q ss_pred CCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 027426 14 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPG 93 (223)
Q Consensus 14 ~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (223)
+|+|+|||+++||||||+|++.++|.++.+++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999988998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh---cCCCceEEEEEEEEcCC-CceEEEEECCCCc-eeeeCeEEEccchhhHHHHHhcccCCCCCCCCC
Q 027426 94 MAQLLSNTLYYK---RFFPYYSFNVLGGLDNE-GKGCVYTYDAVGS-YERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP 168 (223)
Q Consensus 94 la~~l~~~~~~~---r~rP~~vs~lvaG~d~~-~~~~Ly~id~~G~-~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~ 168 (223)
+++.++++++.. ..|||+|++|+||||++ ++|+||.+||+|+ +..++++|+|+|+++++++||+.|
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~--------- 151 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLY--------- 151 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcC---------
Confidence 999999999654 37999999999999964 6799999999994 777789999999999999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCc-------EEEEEEcCCCeEEE
Q 027426 169 AQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK-------LEIVVLNKGGIHRE 216 (223)
Q Consensus 169 ~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~-------i~i~~i~~~g~~~~ 216 (223)
+++||.+||++++++||..+.++|..+++. ++|++|+++|++..
T Consensus 152 ----~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l 202 (219)
T TIGR03690 152 ----SPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRV 202 (219)
T ss_pred ----CCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEc
Confidence 479999999999999999999999866664 39999999998753
No 15
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-43 Score=294.20 Aligned_cols=185 Identities=18% Similarity=0.219 Sum_probs=169.9
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEcc----CceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC-CCC
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNK-QMS 90 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 90 (223)
|.+|||+++||||||+|+|.+++. +..++.+|||+|+ +||+|+.||+.+|++.+++++|.+++.|++++|+ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l-~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGV-DNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCC-ccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 568999999999999999998874 4445789999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHhh---h-c------CCCceEEEEEEEEcCCCceEEEEECCCCceeee----CeEEEccchhhHHHHHh
Q 027426 91 CPGMAQLLSNTLYY---K-R------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV----GYSSQGSGSTLIMPFLD 156 (223)
Q Consensus 91 ~~~la~~l~~~~~~---~-r------~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~----~~~aiG~g~~~a~~~Le 156 (223)
++.+++.+++.++. + . .|||+|++|++|||++.+|+||.+||+|++.++ +|+|+|. +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 99999999998633 1 1 489999999999997667999999999999998 5689996 699999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027426 157 NQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 215 (223)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
++|+ ++||++||++++++||..+.+||..++++|+|++|+++|++.
T Consensus 159 k~yk-------------~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 159 RVIT-------------PDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred HhcC-------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence 9965 799999999999999999999999999999999999999987
No 16
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-43 Score=294.12 Aligned_cols=189 Identities=18% Similarity=0.251 Sum_probs=175.7
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|++.++ .++.+++.+|||+|+++++|++||+.+|++.+.+++|.+++.|++.+|++++
T Consensus 23 av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 101 (227)
T cd03750 23 AVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIP 101 (227)
T ss_pred HHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 457899999999999999999999985 4777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.+ |+++ .|||+|++|++|||++ +|+||.+||+|++.+++++|+|+|+++++++||++|+
T Consensus 102 v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 174 (227)
T cd03750 102 VSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYN------ 174 (227)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhcc------
Confidence 999999999998 5554 7999999999999965 5999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEE
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKG-GIHR 215 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~-g~~~ 215 (223)
++||++||++++++||+.+.++|. ++.+++|++|+++ |++.
T Consensus 175 -------~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~ 216 (227)
T cd03750 175 -------EDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRL 216 (227)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEE
Confidence 799999999999999999999875 8899999999986 6764
No 17
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-43 Score=290.65 Aligned_cols=185 Identities=21% Similarity=0.274 Sum_probs=173.1
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|++.+++..+..++.+|||+|+++|+|++||+.+|++.+.+++|.+++.|+++++++++
T Consensus 25 a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 104 (213)
T cd03752 25 AISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIP 104 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999986666669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhh--cCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~--r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++..+ |++ +.|||+|++|++|||++.+|+||.+||+|++.+++++|+|+++.+++++||+.|+
T Consensus 105 v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~------ 178 (213)
T cd03752 105 VEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYK------ 178 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhcc------
Confidence 999999999886 443 3689999999999997667999999999999999999999999999999999954
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i 208 (223)
|+||++||++++++||..+.+||..++.+++|+++
T Consensus 179 -------~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 179 -------DDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 79999999999999999999999889999999875
No 18
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.8e-43 Score=295.34 Aligned_cols=189 Identities=17% Similarity=0.191 Sum_probs=177.0
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.+++.++..++.+|||+|+++++|+++|+.+|++.+.+.+|.+++.|++.++++++
T Consensus 27 av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 106 (253)
T PTZ00246 27 AINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQP 106 (253)
T ss_pred HHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999997776667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hh--cCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTLY--YK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~--~~--r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++..++ ++ +.|||+|++|++|||++++|+||.+||+|++.+++++|+|+|+++++++||++|
T Consensus 107 v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~------- 179 (253)
T PTZ00246 107 VEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEW------- 179 (253)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhc-------
Confidence 9999999998873 33 378999999999999767799999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
+++|+++||++++++||+.+.++|..++.+++|++|+++|
T Consensus 180 ------~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 180 ------KEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred ------cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 4799999999999999999999999899999999999886
No 19
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-43 Score=286.39 Aligned_cols=181 Identities=19% Similarity=0.326 Sum_probs=168.8
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.+.+ ++..++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++++
T Consensus 23 av~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (207)
T cd03755 23 AVRKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVT 101 (207)
T ss_pred HHHcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4578999999999999999999998765 666678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.+ |+++ .|||+|++|++|+|++++|+||.+||+|++.+++++|+|+|+++++++||++|+
T Consensus 102 ~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~------ 175 (207)
T cd03755 102 VEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYK------ 175 (207)
T ss_pred HHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhcc------
Confidence 999999999999 5554 789999999999998778999999999999999999999999999999999964
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i 208 (223)
|+||.+||++++++||..+.+ .++.++||+++
T Consensus 176 -------~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 176 -------EEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 799999999999999999987 57789999975
No 20
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-42 Score=285.04 Aligned_cols=184 Identities=17% Similarity=0.242 Sum_probs=169.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|+|.+++ +.++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++++
T Consensus 23 av~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 99 (211)
T cd03749 23 AVKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIP 99 (211)
T ss_pred HHhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3567999999999999999999998765 3456799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--hc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~--~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++..++. ++ .|||+|++|++|||++ +|+||.+||+|++.+++++|+|++++.++++||++|++
T Consensus 100 v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~----- 173 (211)
T cd03749 100 VSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEE----- 173 (211)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhcc-----
Confidence 99999999998743 43 7899999999999965 59999999999999999999999999999999999762
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccc-ccCCcEEEEEEc
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDI-YTGDKLEIVVLN 209 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~-~~~~~i~i~~i~ 209 (223)
.++||++||+++++++|+.+.++|. .++.+|||++|+
T Consensus 174 ------~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 174 ------FEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred ------ccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 3699999999999999999999887 899999999984
No 21
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.2e-42 Score=287.51 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=177.5
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|++||+.+|++.+.+.++.+++.|++.++++++
T Consensus 25 av~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 103 (224)
T TIGR03633 25 AVKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPID 103 (224)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999985 4677789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.+ |+++ .|||+|++|+||+|+ ++|+||.+||+|++.+++++|+|+++.+++++||+.|
T Consensus 104 ~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~------- 175 (224)
T TIGR03633 104 VETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEY------- 175 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhc-------
Confidence 999999999998 4443 789999999999995 5699999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEee
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYME 219 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~ 219 (223)
+|+|+++||++++++||..+.+ |..+++.++|++|+++|...+.+.
T Consensus 176 ------~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~ 221 (224)
T TIGR03633 176 ------REDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLS 221 (224)
T ss_pred ------cCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECC
Confidence 5899999999999999999888 888999999999999996555443
No 22
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.6e-43 Score=286.30 Aligned_cols=183 Identities=21% Similarity=0.311 Sum_probs=168.1
Q ss_pred CCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 027426 13 NNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCP 92 (223)
Q Consensus 13 ~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++++++
T Consensus 27 ~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~ 105 (215)
T cd03754 27 NAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVD 105 (215)
T ss_pred cCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 45889999999999999999999876 55556889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCC
Q 027426 93 GMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP 168 (223)
Q Consensus 93 ~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~ 168 (223)
.+++.+++++ |+++ .|||++++|++|+|++++|+||.+||+|++.+++++|+|+|++.++++||++|+.
T Consensus 106 ~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~------- 178 (215)
T cd03754 106 VLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKK------- 178 (215)
T ss_pred HHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhcc-------
Confidence 9999999974 6654 6899999999999987779999999999999999999999999999999999873
Q ss_pred CCCCCCCC--CHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027426 169 AQDAVTPL--SEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 169 ~~~~~~~~--s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i 208 (223)
..+| |++||++++++||..+.+||. ++.++||+++
T Consensus 179 ----~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 179 ----KPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred ----ccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 2257 999999999999999999996 4889999875
No 23
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.9e-42 Score=277.68 Aligned_cols=184 Identities=32% Similarity=0.498 Sum_probs=171.3
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecC-cCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRD-YSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+++|+|+|||+++||||||+|++.+.|+.+..++ .+|||+|++++++++||..+|++.+.++++.+++.|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 3689999999999999999999999888886666 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----hhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeee-CeEEEccchhhHHHHHhcccCCCCCC
Q 027426 91 CPGMAQLLSNTL----YYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 91 ~~~la~~l~~~~----~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
++.+++.+++.+ +..+.||+++++|++|+|++++|+||.+||+|++.++ +++|+|+|+++++++||+.|+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~----- 155 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYK----- 155 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHT-----
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhcc-----
Confidence 997777777666 3334799999999999998888999999999999999 699999999999999999964
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027426 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 166 ~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i 208 (223)
++|+++||++++.+||+.+.++|..++++++|++|
T Consensus 156 --------~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 156 --------PDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp --------TTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred --------CCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 79999999999999999999999999999999986
No 24
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-42 Score=284.31 Aligned_cols=183 Identities=17% Similarity=0.138 Sum_probs=168.5
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.++. +...++.+|||+|+++++|++||+.+|++.+++++|.+++.|++.++++++
T Consensus 26 a~~~G~tvIgik~kdgVvla~d~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~ 104 (212)
T cd03751 26 AVENSGTAIGIRCKDGVVLAVEKLVTSK-LYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIP 104 (212)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEcccccc-ccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4578999999999999999999999874 555678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~--~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.++ +++ .|||+|++|++|+|++ +|+||.+||+|++.+++++|+|+++..++++||++|+
T Consensus 105 v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~------ 177 (212)
T cd03751 105 VKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKF------ 177 (212)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhcc------
Confidence 9999999999874 332 7899999999999954 5999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i 208 (223)
++||++||+++++++|..+.+.+...+.+|||+++
T Consensus 178 -------~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 178 -------SELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 79999999999999999999966677789999874
No 25
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4e-42 Score=287.28 Aligned_cols=192 Identities=21% Similarity=0.291 Sum_probs=175.7
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|++.++ .++..++.+|||+|+++++|++||..+|++.++++++.+++.|++.++++++
T Consensus 32 av~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 110 (241)
T PRK03996 32 AVKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIG 110 (241)
T ss_pred HHHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 467899999999999999999999985 4667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~--~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.++ +++ .|||+|++|+||+|++ +|+||.+||+|++.+++++|+|.+++.++++||+.|
T Consensus 111 ~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~------- 182 (241)
T PRK03996 111 VETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNY------- 182 (241)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC-cCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhc-------
Confidence 9999999999984 433 7899999999999964 599999999999999999999999999999999995
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEe
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 218 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 218 (223)
+++|+++||++++++||+.+.++ ..++.+++|++|+++|...+.+
T Consensus 183 ------~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~ 227 (241)
T PRK03996 183 ------KEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKL 227 (241)
T ss_pred ------ccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEEC
Confidence 47999999999999999999876 4588999999999998544443
No 26
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=271.14 Aligned_cols=189 Identities=20% Similarity=0.260 Sum_probs=174.6
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+++.|+|.|||+.++|||||+++|++++ +..++++.||++|++||+|++||+.+|++.+++++|.+++.|++.||++++
T Consensus 30 AikLGsTaIGv~TkEgVvL~vEKritSp-Lm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~ 108 (241)
T KOG0176|consen 30 AIKLGSTAIGVKTKEGVVLAVEKRITSP-LMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPIS 108 (241)
T ss_pred HHhcCCceeeeeccceEEEEEeccccCc-ccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCccc
Confidence 4688999999999999999999999997 677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhh-----c--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCC
Q 027426 91 CPGMAQLLSNTL--YYK-----R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~-----r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~ 161 (223)
++.+.+.+|++. |.. + .|||||++|+||+|. .+|+||+.||||++.+|++-|||+|++-+.+.|++.|+
T Consensus 109 VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~- 186 (241)
T KOG0176|consen 109 VESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYH- 186 (241)
T ss_pred HHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEecceeccccchHHHHHHHHHHh-
Confidence 999999999987 322 1 599999999999995 45999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEE
Q 027426 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG-IHR 215 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~ 215 (223)
++|+++||+.+++..|+.+++.. .+..|+++.+++++| ++.
T Consensus 187 ------------~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nvev~~vt~e~~f~~ 228 (241)
T KOG0176|consen 187 ------------KDLTLKEAEKIVLKILKQVMEEK-LNSNNVEVAVVTPEGEFHI 228 (241)
T ss_pred ------------hcccHHHHHHHHHHHHHHHHHHh-cCccceEEEEEcccCceEe
Confidence 69999999999999999999854 577899999999984 554
No 27
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=5.7e-42 Score=280.63 Aligned_cols=183 Identities=23% Similarity=0.341 Sum_probs=171.3
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+||++++||||||+|++.+.+ ++..++.+|||+|+++++|++||..+|++.+.+.++.+++.|++.+|++++
T Consensus 23 ~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~ 101 (209)
T cd01911 23 AVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIP 101 (209)
T ss_pred HHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3468999999999999999999999876 566688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++++++.+ |+++ .|||+|++|++|+|++++|+||.+||.|++.+++++++|+++++++++||+.|
T Consensus 102 ~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~------- 174 (209)
T cd01911 102 VEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRY------- 174 (209)
T ss_pred HHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhc-------
Confidence 999999999988 4443 68999999999999887799999999999999999999999999999999995
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i 208 (223)
+|+|+++||++++++||+.+.++|. ++.+++|+++
T Consensus 175 ------~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 175 ------KKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred ------ccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 5899999999999999999999998 9999999875
No 28
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.7e-41 Score=271.46 Aligned_cols=180 Identities=31% Similarity=0.471 Sum_probs=171.8
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|++.+++..+..++.+|||+|+++++++++|..+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999777688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC--CCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRF--FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 173 (223)
Q Consensus 96 ~~l~~~~~~~r~--rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~ 173 (223)
+.+++.+|..+. |||++++|++|+|++++|+||.+||+|++.+++++|+|+++++++++||+.|+
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~------------- 147 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK------------- 147 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHcc-------------
Confidence 999999988774 99999999999998677999999999999999999999999999999999965
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027426 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 174 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i 208 (223)
++||++||++++++||+.+.++|..++.+++|++|
T Consensus 148 ~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 148 PDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred CCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 79999999999999999999999989999999875
No 29
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-41 Score=279.48 Aligned_cols=183 Identities=21% Similarity=0.302 Sum_probs=170.4
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|++.+.+ ++..++.+|||+|+++++|++||+.+|++.+.+.++.+++.|+++++++++
T Consensus 24 av~~G~t~igik~~dgvvla~d~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 102 (211)
T cd03756 24 AVKRGTTALGIKCKEGVVLAVDKRITSK-LVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPID 102 (211)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCCCc-ccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4678999999999999999999999854 676789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hh--cCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTLY--YK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~--~~--r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++..++ ++ +.|||++++|++|+|+. +|+||.+||+|++.+++++|+|++++.++++||+.|
T Consensus 103 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~------- 174 (211)
T cd03756 103 VEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEY------- 174 (211)
T ss_pred HHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC-CCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhc-------
Confidence 9999999999874 34 37899999999999964 599999999999999999999999999999999995
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN 209 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~ 209 (223)
+|+|+++||++++++||..+.++|. ++.+++|++|+
T Consensus 175 ------~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 175 ------KEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred ------cCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 5899999999999999999998876 89999999986
No 30
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-41 Score=276.82 Aligned_cols=182 Identities=19% Similarity=0.256 Sum_probs=167.5
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|++.+.+ ++..++.+||++|+++++|++||+.+|++.+.+.++.+++.|++.++++++
T Consensus 23 a~~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (213)
T cd03753 23 AIKLGSTAIGIKTKEGVVLAVEKRITSP-LMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMT 101 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEecccCCc-CcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4578999999999999999999999875 566678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--hc-------CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCC
Q 027426 91 CPGMAQLLSNTLYY--KR-------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 91 ~~~la~~l~~~~~~--~r-------~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~ 161 (223)
++.+++.+++.++. ++ .|||+|++|++|+|+. +|+||.+||+|++.+++++|+|++++.++++||+.|+
T Consensus 102 ~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~-gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~- 179 (213)
T cd03753 102 VESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDEN-GPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYH- 179 (213)
T ss_pred HHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCC-CCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhcc-
Confidence 99999999999854 22 4899999999999964 5999999999999999999999999999999999954
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027426 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i 208 (223)
++||++||++++++||+.+.+++ .++.++||++|
T Consensus 180 ------------~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 180 ------------KDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred ------------CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 79999999999999999988765 68889999975
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=5.5e-40 Score=271.51 Aligned_cols=181 Identities=19% Similarity=0.212 Sum_probs=163.6
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcC-CCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (223)
++++|+|+|||+++||||||+|++. ++.+|||+|+|+|+|+++|+.+|++.++++++.+++.|++.++ .++
T Consensus 23 av~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~ 94 (228)
T TIGR03691 23 GIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDV 94 (228)
T ss_pred HHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 4578999999999999999999962 3678999999999999999999999999999999999999998 689
Q ss_pred CHHHHHHHHHHHHhhh---cCCCceEEEEEEEEcC-CCceEEEEECCCCceeeeC-eEEEccchhhHHHHHhcccCCCCC
Q 027426 90 SCPGMAQLLSNTLYYK---RFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSP 164 (223)
Q Consensus 90 ~~~~la~~l~~~~~~~---r~rP~~vs~lvaG~d~-~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~ 164 (223)
+++.+++.+++.++.. +.|||+|++|++|||+ +.+|+||.+||+|++.+++ ++|+|++++.++++||++|+
T Consensus 95 ~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~---- 170 (228)
T TIGR03691 95 TGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYR---- 170 (228)
T ss_pred cHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcC----
Confidence 9999998888776422 4689999999999986 4569999999999999976 89999999999999999975
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHH--hcccccCCcEEEEEEcCCC
Q 027426 165 LLLPAQDAVTPLSEAEAVDLVKTCFASAT--ERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 165 ~~~~~~~~~~~~s~~eai~l~~~~l~~~~--~~d~~~~~~i~i~~i~~~g 212 (223)
++||++||++++++||..+. ++|..++.++||+++++++
T Consensus 171 ---------~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 171 ---------DGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR 211 (228)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence 79999999999999999995 4667889999999999765
No 32
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-40 Score=259.42 Aligned_cols=194 Identities=21% Similarity=0.283 Sum_probs=181.8
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++.+|+|||..+||||||++++.+++.+..+.+.+||++|+|+|+|+.+|+++|+..|++++|..+|+|..+||++++
T Consensus 27 ais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP 106 (249)
T KOG0178|consen 27 AISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIP 106 (249)
T ss_pred HHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 35678999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
+++|.+.+|++. |+|- .||||||+|.+|||+..+.+||+.||||++..|++.++|.++..|++.|++.|+.
T Consensus 107 ~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykd----- 181 (249)
T KOG0178|consen 107 CEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKD----- 181 (249)
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhcc-----
Confidence 999999999999 5553 7999999999999988789999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
..++++||..+|++.|..+.+.+..+...+||+.+++++-+.+
T Consensus 182 -------d~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v 224 (249)
T KOG0178|consen 182 -------DENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTV 224 (249)
T ss_pred -------ccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceE
Confidence 4577999999999999999999999999999999999976553
No 33
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-39 Score=252.45 Aligned_cols=190 Identities=19% Similarity=0.312 Sum_probs=175.3
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++.+|+|+||++++|+|||+.+++.... +...+...||..+++|++|+|+|+.+|++.+++++|.+|+.|+++.+.+++
T Consensus 26 AvrkGstaVgvrg~~~vvlgvEkkSv~~-Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvt 104 (249)
T KOG0183|consen 26 AVRKGSTAVGVRGNNCVVLGVEKKSVPK-LQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVT 104 (249)
T ss_pred HHhcCceEEEeccCceEEEEEeecchhh-hhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcH
Confidence 5789999999999999999999998765 677788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+.++++.+. |++. .||||++.|++|+|++|.|+||+++|+|.+++|++.|+|.+++.+..+|||.|..
T Consensus 105 veyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e----- 179 (249)
T KOG0183|consen 105 VEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKE----- 179 (249)
T ss_pred HHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhccc-----
Confidence 999999999988 5543 7999999999999999999999999999999999999999999999999999874
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEE
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG-IHR 215 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~ 215 (223)
.+-.+..++++|++++|.++.+. .+.++|++++..++ .+.
T Consensus 180 ------~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~~~~ 220 (249)
T KOG0183|consen 180 ------EAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKDLKM 220 (249)
T ss_pred ------ccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCceee
Confidence 23488999999999999999984 55899999999987 443
No 34
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-38 Score=244.25 Aligned_cols=190 Identities=25% Similarity=0.375 Sum_probs=181.6
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|.+++||++.|+|++|+|+....+.++..++.+|+++|++++.|+++|..+|+.++.+++.+.++.|++++|.+++|..+
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hc-CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCC
Q 027426 95 AQLLSNTLYY-KR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 95 a~~l~~~~~~-~r-~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~ 172 (223)
|++.++.+.. .| .+||.|++|+||+|++.+|.||.+|..|+..+.+|++.|.++.++.++|+++|+
T Consensus 81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~------------ 148 (200)
T KOG0177|consen 81 AHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK------------ 148 (200)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhC------------
Confidence 9999999954 34 789999999999999977999999999999999999999999999999999965
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 173 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
||||.+||+++..+|+.++.+|-..+..++.|.+|++||++...
T Consensus 149 -pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~ 192 (200)
T KOG0177|consen 149 -PDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLD 192 (200)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceecc
Confidence 89999999999999999999999999999999999999998654
No 35
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-38 Score=244.31 Aligned_cols=190 Identities=19% Similarity=0.237 Sum_probs=176.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++.+|.+.|||+..||||||++++..+. +....+.+|+++|.++|+|.+||..+|++.+++..|+.+++|...|+++++
T Consensus 28 Av~~G~~SvGi~A~nGvVlatekk~~s~-L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~p 106 (233)
T KOG0181|consen 28 AVVNGQTSVGIKAANGVVLATEKKDVSP-LVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIP 106 (233)
T ss_pred HHhCCCCceeeeecCceEEEeccCCCCc-cchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCC
Confidence 3567999999999999999999988775 666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
+.+|.+.++.++ |++. .||||++++++|||.. +|.||++||||+++.|+++|.|.+...+++|||++|+
T Consensus 107 t~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~------ 179 (233)
T KOG0181|consen 107 TTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYN------ 179 (233)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccceeehhhhhhccCcchHHHHHHHHhc------
Confidence 999999999999 5554 7999999999999964 6999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
++|.+++++..++..|++..+.. .+.+++||+++..++++..
T Consensus 180 -------edleldd~ihtailtlkE~fege-~~~~nieigv~~~~~F~~l 221 (233)
T KOG0181|consen 180 -------EDLELDDAIHTAILTLKESFEGE-MTAKNIEIGVCGENGFRRL 221 (233)
T ss_pred -------cccccchHHHHHHHHHHHHhccc-cccCceEEEEecCCceeec
Confidence 69999999999999999999865 4778999999998888764
No 36
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-37 Score=235.71 Aligned_cols=203 Identities=24% Similarity=0.442 Sum_probs=194.0
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027426 8 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
++++..+|+++||+++|+||.||+|.|........+.+.+|||+++|+++++.+|+..|++.+.++++...+.|+++.++
T Consensus 1 m~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R 80 (204)
T KOG0180|consen 1 MSIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER 80 (204)
T ss_pred CcceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence 35677889999999999999999999998776677889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeee-CeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 88 QMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
+|-|+.+++.++..+|++|+-||-+..++||+|++++|+|..+|..|..... +|++.|.+++..++..|..|
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly------- 153 (204)
T KOG0180|consen 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALY------- 153 (204)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999765 59999999999999999994
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 223 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
+|||..+|..+.+..+|..+.+||+.+|+...+.+|++|.+..+.++.|+|
T Consensus 154 ------~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK~RmD 204 (204)
T KOG0180|consen 154 ------EPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLKGRMD 204 (204)
T ss_pred ------CCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhhhcCC
Confidence 589999999999999999999999999999999999999999999999998
No 37
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-37 Score=249.09 Aligned_cols=203 Identities=23% Similarity=0.354 Sum_probs=190.4
Q ss_pred CCCCCcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHH
Q 027426 3 KQHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQ 82 (223)
Q Consensus 3 ~~~~~~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (223)
|-|+++.|++. ||++||++++|||+||+|+..++|++...+++++||+|+|++++|+||..+|+|.+.+.+.....+..
T Consensus 30 ~~qrt~~p~vT-GTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn 108 (256)
T KOG0185|consen 30 PIQRTLNPIVT-GTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDN 108 (256)
T ss_pred CcccccCceec-cceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccc
Confidence 56889999996 99999999999999999999999999999999999999999999999999999999999998876633
Q ss_pred -HhcCCCCCHHHHHHHHHHHHhhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhccc
Q 027426 83 -HQHNKQMSCPGMAQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159 (223)
Q Consensus 83 -~~~~~~~~~~~la~~l~~~~~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~ 159 (223)
+..|+.+.|+.++.+|.+++|.+| +.|++.++++||+|.++.|.|-.+|..|..++.+..|+|.|.+++.++|++.+
T Consensus 109 ~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~ 188 (256)
T KOG0185|consen 109 RLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEW 188 (256)
T ss_pred ccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhh
Confidence 556799999999999999999987 89999999999999989999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 160 KSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 160 ~~~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
+++ .++++.+||.+++.+||+....||+.+.++++|++|+++|+++.
T Consensus 189 ~~k----------~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~ 235 (256)
T KOG0185|consen 189 EKK----------GEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTIS 235 (256)
T ss_pred hcc----------chhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEec
Confidence 732 26899999999999999999999999999999999999999865
No 38
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=245.77 Aligned_cols=187 Identities=15% Similarity=0.165 Sum_probs=170.5
Q ss_pred cccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 027426 10 PYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
.++.+++|||||+||||||+++++.++++ +..+...+|||.|+.||+|+++|+.+|.+.+.+++|.++..|+.+|+.++
T Consensus 29 KAven~~T~IGIk~kdGVVl~vEKli~Sk-Ly~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~pi 107 (254)
T KOG0184|consen 29 KAVENSGTCIGIKCKDGVVLAVEKLITSK-LYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPI 107 (254)
T ss_pred HHHhcCCcEEEEecCCeEEEEEeeeeccc-ccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCC
Confidence 35788999999999999999999999998 55578889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhc----CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCC
Q 027426 90 SCPGMAQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 90 ~~~~la~~l~~~~~~~r----~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
|...++.+++++++.++ .|||||+.++++||. ++|+||+++|||..+.++++|+|.|.+.|++.|||.--
T Consensus 108 P~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~----- 181 (254)
T KOG0184|consen 108 PGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKI----- 181 (254)
T ss_pred chHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHHhccc-----
Confidence 99999999999995443 799999999999995 55999999999999999999999999999999999843
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q 027426 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKG 211 (223)
Q Consensus 166 ~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~ 211 (223)
.+|+.+|+++.+.+.|..+++......-.+||.++..+
T Consensus 182 --------~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~e 219 (254)
T KOG0184|consen 182 --------DEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEE 219 (254)
T ss_pred --------ccccHHHHHHHHHheeEeecccccCcceEEEEEEEEee
Confidence 48999999999999999998776555567888888743
No 39
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-37 Score=239.14 Aligned_cols=196 Identities=29% Similarity=0.363 Sum_probs=185.1
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+..|||++||++++||||++|+|.+.|.++.++-.+|+.+|+|+|+||-||.++|.|.+.+.++-.+..|..+++++++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCC
Q 027426 91 CPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~ 170 (223)
+...|+.++++.|++|- -+.+.+|+||||+..+.++|.|--.|...+.++..-|+|+.+++++++..
T Consensus 95 v~~aA~l~r~~~Y~~re-~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~------------ 161 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE-MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDAN------------ 161 (224)
T ss_pred HHHHHHHHHHHHHhCHH-hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhh------------
Confidence 99999999999998872 37789999999998778999997788888999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeec
Q 027426 171 DAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMEL 220 (223)
Q Consensus 171 ~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
|+|+|++||++++.++|+..++.||-.+|+-|.+.+|+++|++++.++.
T Consensus 162 -~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~ 210 (224)
T KOG0174|consen 162 -WRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPG 210 (224)
T ss_pred -cCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecC
Confidence 5689999999999999999999999999999999999999999888764
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-36 Score=240.17 Aligned_cols=195 Identities=22% Similarity=0.333 Sum_probs=181.8
Q ss_pred CCcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhc
Q 027426 6 PAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQH 85 (223)
Q Consensus 6 ~~~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 85 (223)
...+.+.+.|||++||.++||||+++|+|.|.|..+...+.+||+.+.++|+||.+|..+|...+.+.+..+.+.|+++.
T Consensus 28 ~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t 107 (271)
T KOG0173|consen 28 LKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNT 107 (271)
T ss_pred CCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhcc
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCC
Q 027426 86 NKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 86 ~~~~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
++.+.+-...+.+.+.+|.+.. -.++.+|++|+|+.| ||||.+-|.|+....+|.+.|+|+..|++.||..
T Consensus 108 ~R~~rVv~A~~mlkQ~LFrYqG-~IgA~LiiGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr------- 178 (271)
T KOG0173|consen 108 GRKPRVVTALRMLKQHLFRYQG-HIGAALILGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESR------- 178 (271)
T ss_pred CCCCceeeHHHHHHHHHHHhcC-cccceeEEccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHh-------
Confidence 9999999999999999976542 378999999999876 9999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027426 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 215 (223)
Q Consensus 166 ~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
|+|||++|||++|+.+|+.+.+..|..+|+++++|+|++.+...
T Consensus 179 ------~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 179 ------WKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred ------cCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 56899999999999999999999999999999999999877654
No 41
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-35 Score=229.51 Aligned_cols=199 Identities=19% Similarity=0.269 Sum_probs=181.4
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027426 8 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
|....+.|-|.||++++|++|+++.++++.+ ++.++.+.++|+|+.+|+|+++|..+|++..+.++|.++.+++++||.
T Consensus 29 fkAin~~gltsVavrgkDcavvvsqKkvpDK-Lld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gy 107 (246)
T KOG0182|consen 29 FKAINQAGLTSVAVRGKDCAVVVTQKKVPDK-LLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGY 107 (246)
T ss_pred HHHhhcCCCceEEEcCCceEEEEecccCccc-ccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCC
Confidence 3334445899999999999999999999997 677888999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCC
Q 027426 88 QMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPS 163 (223)
Q Consensus 88 ~~~~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~ 163 (223)
+|+++.|++++++.. |+|+ +||+||.+++.|+|++-||.+|.+||.|.+..+++++.|.....+.++||++|++
T Consensus 108 emp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk-- 185 (246)
T KOG0182|consen 108 EMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKK-- 185 (246)
T ss_pred CCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhcc--
Confidence 999999999999988 6666 8999999999999999889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEee
Q 027426 164 PLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYME 219 (223)
Q Consensus 164 ~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~ 219 (223)
..+++.+|++++++.||..+..-|.. ...+||.+++++......+.
T Consensus 186 ---------~~~~t~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~Ls 231 (246)
T KOG0182|consen 186 ---------DIDLTFEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRILS 231 (246)
T ss_pred ---------CccchHHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeecc
Confidence 24589999999999999999998874 46999999999976555443
No 42
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-35 Score=235.86 Aligned_cols=189 Identities=25% Similarity=0.344 Sum_probs=181.8
Q ss_pred CCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 027426 13 NNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCP 92 (223)
Q Consensus 13 ~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
.+|||.+|++++.|||+|+|+|.+.|.+|-+..++||.+||++++-.++|-++|++..-+.+.++|..|++++++.|+|.
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCC
Q 027426 93 GMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 93 ~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~ 172 (223)
..++.|++++|++|.--+.+..+++|||+.| |.||.+|..|+-.+-+-.++|+|+.+|++.|+..|+
T Consensus 149 aASKllsN~~y~YkGmGLsmGtMi~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr------------ 215 (285)
T KOG0175|consen 149 AASKLLSNMVYQYKGMGLSMGTMIAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYR------------ 215 (285)
T ss_pred HHHHHHHHHHhhccCcchhheeeEeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCCC------------
Confidence 9999999999999866788999999999766 999999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027426 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 215 (223)
Q Consensus 173 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
+|||.+||.+|++.++..|..||..+|+-+.++.|+++|-..
T Consensus 216 -~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~ 257 (285)
T KOG0175|consen 216 -YDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVK 257 (285)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCcccee
Confidence 699999999999999999999999999999999999999543
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=2e-33 Score=222.44 Aligned_cols=167 Identities=20% Similarity=0.243 Sum_probs=146.3
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEc-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPG 93 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (223)
|||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..+|++.|.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999883 21 466
Q ss_pred HHHHHHHHHhhhc-CCCceEEEEEEEEcCCCceEEEEECCCCceeee--CeEEEccchhhHHHHHhcccCCCCCCCCCCC
Q 027426 94 MAQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 94 la~~l~~~~~~~r-~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~ 170 (223)
+++.+.. +...+ .+|+.+++|++ |+ |+||.+|+.|++.+. ++.|+|+|+.+++++||++|+.
T Consensus 76 ~a~l~~~-l~~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~--------- 140 (172)
T PRK05456 76 AVELAKD-WRTDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLEN--------- 140 (172)
T ss_pred HHHHHHH-HHhccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhc---------
Confidence 6655533 32233 36888999994 43 699999999999776 7999999999999999999751
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q 027426 171 DAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVV 207 (223)
Q Consensus 171 ~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~ 207 (223)
|+| ||++++++|++++.+||..++++|+|-.
T Consensus 141 ---~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 141 ---TDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred ---CCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 699 9999999999999999999999998864
No 44
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=224.73 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=172.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.++.|++.||++.++-.||++-++..+ -+++..+|||+|++|++++++|+++|++.|.+++|.+|..++..|+++++
T Consensus 28 avkqGsatVGLks~thaVLvAl~r~~s---eLss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~p 104 (264)
T KOG0863|consen 28 AVKQGSATVGLKSRTHAVLVALKRAQS---ELSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLP 104 (264)
T ss_pred HHhcccceEeecccceEEEeeeccchh---HHHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCccc
Confidence 468999999999999999999888764 35678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--hc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~--~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
+..+...+++.++. ++ .|||||.++++|||+.| |+||.++|+|++.++++++||+.++.++++||+++..
T Consensus 105 v~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~----- 178 (264)
T KOG0863|consen 105 VLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEE----- 178 (264)
T ss_pred HHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHH-----
Confidence 99999999998854 44 79999999999999765 9999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCCC
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERD-IYTGDKLEIVVLNKGG 212 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~~i~i~~i~~~g 212 (223)
.++++.+|.+..++.||+.+...| .+++.+++|+++.+|.
T Consensus 179 ------f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~ 219 (264)
T KOG0863|consen 179 ------FEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE 219 (264)
T ss_pred ------HhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC
Confidence 479999999999999999999755 6788999999999985
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=8.1e-33 Score=217.68 Aligned_cols=165 Identities=18% Similarity=0.246 Sum_probs=142.8
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccC-ceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+| +++|++||..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999987774 44
Q ss_pred HHHHHHHHhhhcCCCce-EEEEEEEEcCCCceEEEEECCCCceeeeC--eEEEccchhhHHHHHhcccCCCCCCCCCCCC
Q 027426 95 AQLLSNTLYYKRFFPYY-SFNVLGGLDNEGKGCVYTYDAVGSYERVG--YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~l~~~~~~~r~rP~~-vs~lvaG~d~~~~~~Ly~id~~G~~~~~~--~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
++.+. .+...+.+|+. +.++++++ ++||.+||.|.+.+.+ +.++|+|+.+|+++||..|+
T Consensus 76 a~l~~-~l~~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk----------- 138 (171)
T cd01913 76 VELAK-DWRTDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLD----------- 138 (171)
T ss_pred HHHHH-HHHhccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhc-----------
Confidence 44433 33334545665 66665433 3899999999999984 99999999999999999986
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q 027426 172 AVTP-LSEAEAVDLVKTCFASATERDIYTGDKLEIVV 207 (223)
Q Consensus 172 ~~~~-~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~ 207 (223)
++ || +.+++.+|++.|.+||+.++++|+|-.
T Consensus 139 --~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 139 --HTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred --cCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 54 99 559999999999999999999998764
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=2.5e-32 Score=214.87 Aligned_cols=166 Identities=20% Similarity=0.275 Sum_probs=142.5
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEc-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++| +|+++|++||..+|++.|.++++.+++.|++.. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999988632 3666
Q ss_pred HHHHHHHHhhhcCCC-ceEEEEEEEEcCCCceEEEEECCCCceeee--CeEEEccchhhHHHHHhcccCCCCCCCCCCCC
Q 027426 95 AQLLSNTLYYKRFFP-YYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~l~~~~~~~r~rP-~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
++.+++ +..++.+| +.+.+|++++ ++||.+||.|.+.++ ++.++|+|+.+|+++||..|++
T Consensus 76 a~l~~~-~~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~---------- 139 (171)
T TIGR03692 76 VELAKD-WRTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN---------- 139 (171)
T ss_pred HHHHHH-HhhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc----------
Confidence 666655 22233333 3366666533 389999999999996 5999999999999999999852
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q 027426 172 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVV 207 (223)
Q Consensus 172 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~ 207 (223)
++|+ |++++.++++.|.+||..++++|+|..
T Consensus 140 --~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 140 --TDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --CCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 5777 999999999999999999999998864
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=4.1e-29 Score=194.42 Aligned_cols=161 Identities=27% Similarity=0.349 Sum_probs=152.3
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|++.+.+........+|+++++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998776678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc-CCCceEEEEEEEEcCCCceEEEEECCCCceeee-CeEEEccchhhHHHHHhcccCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 173 (223)
Q Consensus 96 ~~l~~~~~~~r-~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~ 173 (223)
+.+++.++..+ .+|+++++|++|+|+ ++|+||.+||+|.+.++ .++++|.++..+.++|++.++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~------------- 146 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYK------------- 146 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhc-------------
Confidence 99999997765 589999999999997 67999999999999999 899999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027426 174 TPLSEAEAVDLVKTCFA 190 (223)
Q Consensus 174 ~~~s~~eai~l~~~~l~ 190 (223)
++++.+|+++++.+||.
T Consensus 147 ~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 147 PDMTLEEAVELALKALK 163 (164)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 68999999999999986
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.4e-17 Score=126.85 Aligned_cols=170 Identities=20% Similarity=0.230 Sum_probs=137.0
Q ss_pred CCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccC-ceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 027426 14 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCP 92 (223)
Q Consensus 14 ~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
+|||||+++.++-|+||+|.++|.|+.++..+.+|+.+|.. .++.+++|.++|+..|.+.+..+++.|. | .+.
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---g---~L~ 76 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---G---DLF 76 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---C---cHH
Confidence 69999999999999999999999999999999988888875 7999999999999999999999998874 2 222
Q ss_pred HHHHHHHHHHhhhc-CCCceEEEEEEEEcCCCceEEEEECCCCceeee--CeEEEccchhhHHHHHhcccCCCCCCCCCC
Q 027426 93 GMAQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPA 169 (223)
Q Consensus 93 ~la~~l~~~~~~~r-~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~ 169 (223)
..+..+++-+++.+ +|-+.+-+|++ |++ .+|.+...|...+. ..+|||+|..+|++..+..++.
T Consensus 77 raavelaKdwr~Dk~lr~LEAmllVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~-------- 143 (178)
T COG5405 77 RAAVELAKDWRTDKYLRKLEAMLLVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN-------- 143 (178)
T ss_pred HHHHHHHHhhhhhhHHHHHhhheeEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc--------
Confidence 34445555555544 45566777775 543 58888888988654 4999999999999999999863
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q 027426 170 QDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN 209 (223)
Q Consensus 170 ~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~ 209 (223)
+++| |.+++.++|..+.+-+.+++.+|.|..++
T Consensus 144 ----~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 144 ----TELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred ----cCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 4555 55678889998888888888888887665
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.8e-13 Score=108.26 Aligned_cols=188 Identities=19% Similarity=0.205 Sum_probs=149.0
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEcc---Cc-eEEeecCChhHHHHHHHHHHHHHHHHHHhc-CCCC
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLA---DK-CVMASSGFQADVKALQKLLAARHLIYQHQH-NKQM 89 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~-~~~~ 89 (223)
||.|||++-..|.|+++|+|...| +-..+..+|+|... |+ +.++.+|..+-.|.+++.+.+..+.-.-.. -..+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAG-vD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAG-VDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccC-chHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 688999999999999999999887 33446777877654 44 566789999999999999988776221111 1233
Q ss_pred CHHHHHHHHHHHH---hhh-c------CCCceEEEEEEEEcCCCceEEEEECCCCceee----eCeEEEccchhhHHHHH
Q 027426 90 SCPGMAQLLSNTL---YYK-R------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER----VGYSSQGSGSTLIMPFL 155 (223)
Q Consensus 90 ~~~~la~~l~~~~---~~~-r------~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~----~~~~aiG~g~~~a~~~L 155 (223)
++-..+..+.... +.+ + .--|.|++|++|.-.-+.|+||.|.|.|++.+ .+|.-+|. ..+-+++|
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPil 158 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPIL 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhh
Confidence 5556666665544 221 1 24588999999998777799999999999986 46999998 56889999
Q ss_pred hcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 156 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 156 e~~~~~~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
+..+.. +++++|+.+.++-.+....+.+...|-++++.++.+|-.+...
T Consensus 159 dR~i~~-------------~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~~ 207 (255)
T COG3484 159 DRTITY-------------DTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVRH 207 (255)
T ss_pred hhhhhc-------------cCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeeee
Confidence 999874 9999999999999999999999999999999999999765443
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.44 E-value=0.022 Score=45.49 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+.+||..+++|.|||+|+|- ++|-|.-.....|-+.| -.|+--+-+.|
T Consensus 1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEeeL---------YsG~IktdeEL 49 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEEL---------YSGKIKTDEEL 49 (194)
T ss_pred CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHHH---------hCCccCCHHHH
Confidence 678999999999999999973 24556665555555544 13444466666
Q ss_pred HHHHHHHH---h-h-hc--CCCceEEEEEEEEcCC-----CceEEEEECCCCcee--e-----eCeEEEcc-------ch
Q 027426 95 AQLLSNTL---Y-Y-KR--FFPYYSFNVLGGLDNE-----GKGCVYTYDAVGSYE--R-----VGYSSQGS-------GS 148 (223)
Q Consensus 95 a~~l~~~~---~-~-~r--~rP~~vs~lvaG~d~~-----~~~~Ly~id~~G~~~--~-----~~~~aiG~-------g~ 148 (223)
.+....+= + + .| .+-.+- +|+|-+-.. ..-++|.+- |++. + ..-...|. |.
T Consensus 50 ~kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~--g~~~Ivei~~~~i~~~~~g~~sgiIVfGN 126 (194)
T PF09894_consen 50 LKKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATK--GKYAIVEIENDEITNKSRGEGSGIIVFGN 126 (194)
T ss_pred HHHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecC--CCEEEEEecCCeEEEEecCCceeEEEECC
Confidence 66554322 1 0 11 222222 333333211 123566542 2221 1 01112222 34
Q ss_pred hhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q 027426 149 TLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKG 211 (223)
Q Consensus 149 ~~a~~~Le~~~~~~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~ 211 (223)
.+.+.+.++.+++ .|.|.|+++++..+..++|..+...-+..+..+++...++.
T Consensus 127 k~~K~ia~~~lkk---------~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 127 KFTKEIANKELKK---------YWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHHHH---------hcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 4544444444332 16789999999999999999998877777788998887654
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.70 E-value=0.95 Score=37.66 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=94.9
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+.+|+..+++|.|||.|+|. +++-|.-.|...|-+.+ -.|.-.|-+.|
T Consensus 1 MtLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEekL---------YsGeIkteEEL 49 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEEL 49 (293)
T ss_pred CeEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHHh---------hcCccccHHHH
Confidence 678999999999999999874 13445666665555544 24665677888
Q ss_pred HHHHHHHH--h--h---hcCCCceEEEEEEEEcCCC-----ceEEEEECCCCceee-----------eC-eEEEccchhh
Q 027426 95 AQLLSNTL--Y--Y---KRFFPYYSFNVLGGLDNEG-----KGCVYTYDAVGSYER-----------VG-YSSQGSGSTL 150 (223)
Q Consensus 95 a~~l~~~~--~--~---~r~rP~~vs~lvaG~d~~~-----~~~Ly~id~~G~~~~-----------~~-~~aiG~g~~~ 150 (223)
++++..+- . + .+.|-..-+++++-+..-+ .-++|.+-..-.+.+ -. ..-+=.|..+
T Consensus 50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 87765543 1 1 1133343344444443221 124554422211111 11 2223334555
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q 027426 151 IMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKG 211 (223)
Q Consensus 151 a~~~Le~~~~~~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~ 211 (223)
++..-.+.++. .|.+.++++++.++..++|..+...-+..+..+++..+++.
T Consensus 130 ~Ke~aneflk~---------~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 130 TKEVANEFLKD---------NLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHHh---------hccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 55444444431 26789999999999999999998766777788998888764
No 52
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=81.52 E-value=1.9 Score=32.51 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=37.9
Q ss_pred EEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHH
Q 027426 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVD 183 (223)
Q Consensus 128 y~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~~s~~eai~ 183 (223)
..+|-+|.+...+|-..|.|+..|.+.+-.. |...++++||..
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTe-------------wvkgkt~dea~k 113 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATE-------------WVKGKTLDEALK 113 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHH-------------HHccccHHHHHh
Confidence 4678899999999999999999999888887 567899999885
No 53
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=63.91 E-value=21 Score=27.35 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027426 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 213 (223)
Q Consensus 174 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
+.+|+++|.+++..++..+.+. +.++.|.+++..|-
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~ 41 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGH 41 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCC
Confidence 6899999999999999988773 68999999999984
No 54
>PRK09732 hypothetical protein; Provisional
Probab=62.20 E-value=23 Score=26.84 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027426 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 215 (223)
Q Consensus 174 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
+.||++.|.+++..++..+.+. +.++.|++++..|.-.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~ 42 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLL 42 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEE
Confidence 4799999999999999988874 4689999999998543
No 55
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=55.34 E-value=17 Score=27.11 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027426 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 215 (223)
Q Consensus 174 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
|.+|.++|.+++..++..+.++. .++-|++++..|...
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~~~ 38 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGHLL 38 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-EE
T ss_pred CCcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCCEE
Confidence 35799999999999999998853 468899999998543
No 56
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=43.71 E-value=47 Score=26.90 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeec
Q 027426 179 AEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMEL 220 (223)
Q Consensus 179 ~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
=|++...+..|......|......+++.+|+-+|....+.|+
T Consensus 21 IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf 62 (207)
T COG4245 21 IEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPF 62 (207)
T ss_pred HHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEech
Confidence 356677888888888889888889999999999876666554
No 57
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=31.55 E-value=89 Score=26.55 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=22.0
Q ss_pred EEEEcCCCceEEEEECCCCceeee---CeEEEccch
Q 027426 116 LGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGS 148 (223)
Q Consensus 116 vaG~d~~~~~~Ly~id~~G~~~~~---~~~aiG~g~ 148 (223)
++|.| -....+|..|....+ ..||.|.|+
T Consensus 104 IGGQD----~K~I~~~~~G~v~~f~MNdkCAAGTG~ 135 (262)
T TIGR02261 104 IGALH----GRAIRMDERGKVEAYKMTSQCASGSGQ 135 (262)
T ss_pred eCCCc----eEEEEEcCCCcEeeEEecCcccccccH
Confidence 57777 347888989987654 488999986
No 58
>PRK02487 hypothetical protein; Provisional
Probab=31.31 E-value=1.9e+02 Score=22.41 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027426 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 173 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
.+.++.++|.+++..++..+.++ +.++.|+|++ .|
T Consensus 20 ~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G 54 (163)
T PRK02487 20 FPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NG 54 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CC
Confidence 47899999999999999988764 3588899985 55
No 59
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=30.81 E-value=91 Score=20.46 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 027426 71 QKLLAARHLIYQHQHNKQMSCPGMAQLLS 99 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~la~~l~ 99 (223)
++.+++-........|++++.+.+|..+.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 34555566677778899999999999875
No 60
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=30.72 E-value=54 Score=28.19 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=54.4
Q ss_pred cCCCCCHHHHHHHHHHHHhhhc-CCCceEEEEEEEEcCC-CceEEEEECCCCceeeeCeEEEccc-hhhHHHHHhcccCC
Q 027426 85 HNKQMSCPGMAQLLSNTLYYKR-FFPYYSFNVLGGLDNE-GKGCVYTYDAVGSYERVGYSSQGSG-STLIMPFLDNQLKS 161 (223)
Q Consensus 85 ~~~~~~~~~la~~l~~~~~~~r-~rP~~vs~lvaG~d~~-~~~~Ly~id~~G~~~~~~~~aiG~g-~~~a~~~Le~~~~~ 161 (223)
+-+..++++|.......+.... ..| =+.|.|+. |.+-.......|-|.+. ..|.. -.-.++.|-+.++.
T Consensus 50 ~Pe~~~~~eL~~e~~~~l~~~~~~~~-----r~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~ 121 (298)
T COG1754 50 YPECTTPKELTLEVAENLEATPQGGP-----RVLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKP 121 (298)
T ss_pred CccccChhhhcchhccccccccCCCC-----cccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCCh
Confidence 4455566666655544432211 111 23478866 55555678888877654 45555 33344455555432
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEE
Q 027426 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEI 205 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i 205 (223)
+++|+|+|++|...=-....+ ..++..|..
T Consensus 122 ------------e~ItLE~AL~LLsLPR~iG~h--p~sge~I~a 151 (298)
T COG1754 122 ------------ETITLEKALKLLSLPRVIGKH--PDSGEEISA 151 (298)
T ss_pred ------------hhCcHHHHHHHHcCchhhCCC--CCCCcEEEe
Confidence 579999999986544443333 334545543
No 61
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=30.50 E-value=55 Score=19.24 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=19.0
Q ss_pred EccchhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHH
Q 027426 144 QGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDL 184 (223)
Q Consensus 144 iG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~~s~~eai~l 184 (223)
+|.....|..+|+.. +.+++.|+..
T Consensus 11 Tg~~~~~A~~~L~~~----------------~wdle~Av~~ 35 (43)
T PF14555_consen 11 TGADEDVAIQYLEAN----------------NWDLEAAVNA 35 (43)
T ss_dssp H-SSHHHHHHHHHHT----------------TT-HHHHHHH
T ss_pred HCcCHHHHHHHHHHc----------------CCCHHHHHHH
Confidence 466778899999997 7888888875
No 62
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=27.02 E-value=40 Score=20.33 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=21.3
Q ss_pred EccchhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 027426 144 QGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187 (223)
Q Consensus 144 iG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~~s~~eai~l~~~ 187 (223)
.|.....+...+.+... .++++.++.++.+++
T Consensus 13 LGy~~~e~~~av~~~~~------------~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLE------------KPGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHH------------STTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhc------------CCCCCHHHHHHHHHh
Confidence 47777778888877752 168898888777654
No 63
>PRK13599 putative peroxiredoxin; Provisional
Probab=26.79 E-value=1.7e+02 Score=23.81 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=40.9
Q ss_pred ceEEEEECCCCceeeeC--eEEEccchhhHHHHHhcccCCCCCCCCCCCCCCC------------CCCHHHHHHH
Q 027426 124 KGCVYTYDAVGSYERVG--YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT------------PLSEAEAVDL 184 (223)
Q Consensus 124 ~~~Ly~id~~G~~~~~~--~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~------------~~s~~eai~l 184 (223)
.|..|.||+.|.+.... -..+|.....+...|++........-.++..|.| ..+.+||.+.
T Consensus 119 ~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~~~~~~p~~w~~~~~~g~~~~~~~~~~~~~~~~~ 193 (215)
T PRK13599 119 VRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQYGVALPEKWPNNYLIKDHVIVPPSTDEASANER 193 (215)
T ss_pred eeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcEEEcCCCCHHHHHHh
Confidence 48899999999886542 3567888888888887653321122335667765 5777776544
No 64
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.19 E-value=1.6e+02 Score=25.39 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=22.6
Q ss_pred EEEEEEcCCCceEEEEECCCCceeee---CeEEEccch
Q 027426 114 NVLGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGS 148 (223)
Q Consensus 114 ~lvaG~d~~~~~~Ly~id~~G~~~~~---~~~aiG~g~ 148 (223)
+=++|.| -.+..+|..|....+ ..||.|.|+
T Consensus 130 IDIGGQD----sK~I~~d~~G~v~dF~MNdkCAAGTGr 163 (293)
T TIGR03192 130 LDMGGQD----CKAIHCDEKGKVTNFLMNDKCAAGTGR 163 (293)
T ss_pred EEeCCCc----eEEEEEcCCCcEeeeeecCcccccccH
Confidence 3367777 357778999987554 488999986
No 65
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=23.45 E-value=1.2e+02 Score=18.67 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=25.0
Q ss_pred EEECCCCceeeeCeEEEccchhhHHHHHhccc
Q 027426 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159 (223)
Q Consensus 128 y~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~ 159 (223)
|.|.|+|.....--...|.....+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999887766677877777777777764
No 66
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=21.92 E-value=1.6e+02 Score=26.79 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=21.8
Q ss_pred EEEEcCCCceEEEEECCCCceeee---CeEEEccch
Q 027426 116 LGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGS 148 (223)
Q Consensus 116 vaG~d~~~~~~Ly~id~~G~~~~~---~~~aiG~g~ 148 (223)
++|.| -....+|..|....+ ..||.|.|+
T Consensus 274 IGGQD----sK~I~ld~~G~V~dF~MNDKCAAGTGr 305 (432)
T TIGR02259 274 IGGQD----TKGIQIDDHGIVENFQMNDRCAAGCGR 305 (432)
T ss_pred eCCCc----eEEEEEcCCCcEeeeeecCcccccchH
Confidence 57776 347888999977643 489999986
No 67
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=21.87 E-value=1.9e+02 Score=18.20 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q 027426 174 TPLSEAEAVDLVKTCFASATERD 196 (223)
Q Consensus 174 ~~~s~~eai~l~~~~l~~~~~~d 196 (223)
.+||.++|.++.++.++..+-+|
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999877655
No 68
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=21.83 E-value=2.9e+02 Score=21.25 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=40.1
Q ss_pred eEEE-EECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 027426 125 GCVY-TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 193 (223)
Q Consensus 125 ~~Ly-~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~ 193 (223)
..|| .+| .|......|-..|.+...|.+.+=.. |..+.|.+||.++.........
T Consensus 43 i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te-------------~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 43 ITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTE-------------LVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHH
Confidence 4566 555 88888888999999888877655554 3468999999999854444444
No 69
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=20.65 E-value=1.1e+02 Score=18.99 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC
Q 027426 175 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 210 (223)
Q Consensus 175 ~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~ 210 (223)
.-|++||++.|..-|.. ....+++-+|.+
T Consensus 4 gkt~eeAi~~A~~~l~~-------~~~~~~~eVi~~ 32 (52)
T PF14804_consen 4 GKTVEEAIEKALKELGV-------PREELEYEVIEE 32 (52)
T ss_dssp ESSHHHHHHHHHHHTT---------GGGEEEEEEE-
T ss_pred ECCHHHHHHHHHHHhCC-------ChHHEEEEEEEc
Confidence 35899999998777753 235777888776
Done!