Query 027426
Match_columns 223
No_of_seqs 148 out of 1086
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 1.7E-52 5.7E-57 342.6 30.0 213 7-223 1-213 (213)
2 1ryp_M 20S proteasome; multica 100.0 1.5E-51 5.1E-56 339.0 28.3 217 7-223 1-222 (222)
3 1iru_J 20S proteasome; cell cy 100.0 3.3E-50 1.1E-54 327.2 27.7 203 8-223 1-205 (205)
4 1ryp_J 20S proteasome; multica 100.0 2E-49 6.8E-54 322.3 28.4 202 8-223 1-204 (204)
5 1yar_H Proteasome beta subunit 100.0 1.7E-48 6E-53 319.7 25.9 193 8-215 1-194 (217)
6 3h4p_a Proteasome subunit beta 100.0 2E-47 7E-52 313.8 24.0 189 15-216 1-190 (219)
7 1j2q_H Proteasome beta subunit 100.0 1.7E-46 5.9E-51 304.6 26.5 186 16-215 1-187 (202)
8 1ryp_K 20S proteasome; multica 100.0 1.1E-46 3.9E-51 304.6 25.0 190 15-217 1-193 (198)
9 1ryp_H 20S proteasome; multica 100.0 3E-46 1E-50 303.9 26.6 194 10-218 4-197 (205)
10 1g0u_M Proteasome component PR 100.0 9.4E-47 3.2E-51 318.2 24.6 201 3-217 30-243 (266)
11 1ryp_N 20S proteasome; multica 100.0 1.3E-46 4.4E-51 311.7 24.2 193 12-217 5-210 (233)
12 1iru_N 20S proteasome; cell cy 100.0 1.5E-46 5.2E-51 308.5 24.2 192 12-217 5-201 (219)
13 1iru_H 20S proteasome; cell cy 100.0 8.2E-46 2.8E-50 301.2 26.1 191 16-220 1-191 (205)
14 1iru_K 20S proteasome; cell cy 100.0 5E-46 1.7E-50 301.6 24.4 190 15-217 1-192 (201)
15 3nzj_K Proteasome component PR 100.0 7.7E-46 2.6E-50 315.0 26.5 194 11-217 71-264 (287)
16 1ryp_A 20S proteasome; multica 100.0 3.6E-46 1.2E-50 310.8 23.7 196 12-215 26-226 (243)
17 1ryp_L 20S proteasome; multica 100.0 1.3E-45 4.3E-50 301.6 26.3 189 16-217 1-189 (212)
18 1iru_L 20S proteasome; cell cy 100.0 2.2E-45 7.6E-50 298.4 27.0 188 16-217 1-188 (204)
19 3unf_H Proteasome subunit beta 100.0 3.1E-45 1.1E-49 303.4 26.3 187 16-217 1-187 (234)
20 3nzj_H Proteasome component PU 100.0 3.4E-45 1.2E-49 307.4 26.5 189 9-212 23-211 (261)
21 1ryp_C 20S proteasome; multica 100.0 5E-45 1.7E-49 304.0 24.7 189 12-213 28-222 (244)
22 1iru_A 20S proteasome; cell cy 100.0 5.1E-45 1.8E-49 304.4 24.5 192 12-218 32-230 (246)
23 1ryp_I 20S proteasome; multica 100.0 1.4E-44 4.8E-49 297.4 26.5 187 16-217 1-188 (222)
24 1iru_C 20S proteasome; cell cy 100.0 6.9E-45 2.4E-49 306.0 23.6 189 12-213 28-221 (261)
25 1iru_B 20S proteasome; cell cy 100.0 6.7E-45 2.3E-49 301.4 22.8 189 12-216 28-220 (233)
26 1yar_A Proteasome alpha subuni 100.0 1.1E-44 3.7E-49 300.1 24.1 185 12-212 31-219 (233)
27 1ryp_E 20S proteasome; multica 100.0 8.4E-45 2.9E-49 302.3 23.1 187 12-213 23-219 (242)
28 3unf_N Proteasome subunit beta 100.0 3E-44 1E-48 290.6 24.6 189 16-220 1-190 (199)
29 1iru_E 20S proteasome; cell cy 100.0 1.5E-44 5.2E-49 300.6 22.9 186 12-213 31-225 (241)
30 1ryp_D 20S proteasome; multica 100.0 5.2E-44 1.8E-48 297.4 25.6 188 12-212 25-217 (241)
31 1iru_I 20S proteasome; cell cy 100.0 9.8E-44 3.4E-48 294.6 25.6 187 16-217 1-187 (234)
32 1iru_G 20S proteasome; cell cy 100.0 2.2E-44 7.6E-49 301.8 21.8 186 12-211 30-219 (254)
33 1ryp_G 20S proteasome; multica 100.0 4.3E-44 1.5E-48 298.4 22.9 194 12-217 27-227 (244)
34 1q5r_H Proteasome beta-type su 100.0 9.2E-44 3.1E-48 303.1 25.3 193 11-216 61-270 (294)
35 1q5q_H Proteasome beta-type su 100.0 1.7E-43 5.9E-48 293.3 25.3 188 16-216 1-205 (235)
36 1iru_D 20S proteasome; cell cy 100.0 1E-43 3.5E-48 296.8 21.5 184 12-212 26-215 (248)
37 1ryp_F 20S proteasome; multica 100.0 1.8E-43 6.2E-48 292.8 22.3 187 12-216 28-224 (233)
38 1j2p_A Alpha-ring, proteasome 100.0 6.7E-43 2.3E-47 291.6 25.3 187 12-215 31-223 (246)
39 3h4p_A Proteasome subunit alph 100.0 6.1E-44 2.1E-48 300.5 18.8 191 11-218 34-228 (264)
40 3nzj_F Proteasome component C1 100.0 1.7E-43 6E-48 300.6 21.7 188 11-210 30-221 (288)
41 1iru_F 20S proteasome; cell cy 100.0 2.8E-43 9.5E-48 296.5 21.8 189 12-215 29-223 (263)
42 3mi0_A Proteasome subunit alph 100.0 1.1E-42 3.9E-47 290.0 23.8 179 12-212 24-217 (248)
43 2jay_A Proteasome; hydrolase; 100.0 4.3E-43 1.5E-47 298.7 21.6 192 12-216 54-262 (291)
44 1ryp_B 20S proteasome; multica 100.0 6.4E-43 2.2E-47 292.3 22.3 186 12-212 28-218 (250)
45 1q5q_A Proteasome alpha-type s 100.0 9.9E-42 3.4E-46 286.4 21.7 180 11-212 23-215 (259)
46 2z3b_A ATP-dependent protease 100.0 4.1E-37 1.4E-41 245.2 18.8 170 13-209 3-180 (180)
47 1m4y_A ATP-dependent protease 100.0 4.1E-36 1.4E-40 237.5 19.0 167 16-208 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 6.2E-36 2.1E-40 237.2 19.1 168 16-209 1-173 (174)
49 3fpw_A HBPS, extracellular HAE 40.6 52 0.0018 25.5 5.4 39 173-215 62-100 (192)
50 2a2l_A Unknown; structural gen 37.8 32 0.0011 25.2 3.7 38 174-215 10-47 (145)
51 3fau_A NEDD4-binding protein 2 20.4 1.2E+02 0.0041 19.4 3.8 40 175-214 7-46 (82)
52 1ojh_A NBLA; degradation prote 20.4 1.1E+02 0.0039 19.2 3.4 22 175-196 24-45 (65)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.7e-52 Score=342.57 Aligned_cols=213 Identities=49% Similarity=0.836 Sum_probs=201.7
Q ss_pred CcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcC
Q 027426 7 AWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN 86 (223)
Q Consensus 7 ~~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (223)
.|+|++++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++|+|++||+.+|++.++++++.+++.|+++++
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (213)
T 1iru_M 1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNN 80 (213)
T ss_dssp CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 38999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 87 KQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 87 ~~~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++++++.+++.+++.+|++|.|||++++|+||+|++++|+||.+||+|++.++++.|+|+|+++++++||+.++.+++.
T Consensus 81 ~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~- 159 (213)
T 1iru_M 81 KAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ- 159 (213)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCS-
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccc-
Confidence 9999999999999999998899999999999999877899999999999999999999999999999999997642211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 223 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
..|+++||++||++++++||..+.++|..++.+++|++|+++|++++.+++|+|
T Consensus 160 ---~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 160 ---NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213 (213)
T ss_dssp ---SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred ---ccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence 226789999999999999999999999999999999999999999999999998
No 2
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.5e-51 Score=339.03 Aligned_cols=217 Identities=43% Similarity=0.733 Sum_probs=203.2
Q ss_pred CcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcC
Q 027426 7 AWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN 86 (223)
Q Consensus 7 ~~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (223)
.|+|++++|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++|++||+.+|++.++++++.+++.|+++++
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (222)
T 1ryp_M 1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHN 80 (222)
T ss_dssp CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 38999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred -CCCCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCC
Q 027426 87 -KQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 87 -~~~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
++++++.+++.+++.+|++|.+||++++|+||+|++++|+||.+||+|++.++++.|+|+|+++++++||+.++++++.
T Consensus 81 ~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 81 DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp TCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 9999999999999999998889999999999999878899999999999999999999999999999999997643321
Q ss_pred CC----CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027426 166 LL----PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 223 (223)
Q Consensus 166 ~~----~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
.+ ....|+++||++||++++++||..+.++|..++++++|++|+++|++++.+++|+|
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence 11 12247899999999999999999999999999999999999999999999999998
No 3
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=3.3e-50 Score=327.15 Aligned_cols=203 Identities=24% Similarity=0.407 Sum_probs=193.8
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027426 8 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
++|++.+|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++|++||+.+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 47999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcC-CCceEEEEECCCCceeee-CeEEEccchhhHHHHHhcccCCCCCC
Q 027426 88 QMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~-~~~~~Ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
+++++.+++.+++.+|++|..||++++|+||||+ +++|+||.+||+|++.++ +|.|+|+|+++++++||+.|+
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~----- 155 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE----- 155 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccC-----
Confidence 9999999999999999988789999999999996 567999999999999766 479999999999999999965
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027426 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 223 (223)
Q Consensus 166 ~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
++||++||++++++||..+.++|..++++++|++|+++|++++.+++|+|
T Consensus 156 --------~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 156 --------PNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205 (205)
T ss_dssp --------SSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence 79999999999999999999999999999999999999999999999998
No 4
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2e-49 Score=322.30 Aligned_cols=202 Identities=22% Similarity=0.467 Sum_probs=193.2
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027426 8 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
.+|++.+|+|+|||+++||||||+|+|.++|.++..++.+|||+|+ +++|++||+.+|++.++++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 79 (204)
T 1ryp_J 1 SDPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEER 79 (204)
T ss_dssp CCGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3799999999999999999999999999999888888999999999 999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcC-CCceEEEEECCCCceeee-CeEEEccchhhHHHHHhcccCCCCCC
Q 027426 88 QMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~-~~~~~Ly~id~~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
+++++.+++.+++.+|++|..||++++|+||||+ +++|+||.+||+|++.++ +++|+|+|+++++++||+.|+
T Consensus 80 ~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~----- 154 (204)
T 1ryp_J 80 AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE----- 154 (204)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcC-----
Confidence 9999999999999999988779999999999996 577999999999999766 579999999999999999965
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeeccCC
Q 027426 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 223 (223)
Q Consensus 166 ~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
++||++||++++++||..+.++|..++++++|++|+++|++++.+++|+|
T Consensus 155 --------~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 155 --------PNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp --------SSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred --------CCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence 79999999999999999999999989999999999999999999999998
No 5
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.7e-48 Score=319.71 Aligned_cols=193 Identities=26% Similarity=0.425 Sum_probs=178.6
Q ss_pred cCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027426 8 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
|+|++++|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++|++||+.+|++.++++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 88 QMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+++++.+++.+++.+|.+|.|||++++|+|||| ++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 151 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS------- 151 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcc-------
Confidence 999999999999999988889999999999999 45999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC-CCeEE
Q 027426 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK-GGIHR 215 (223)
Q Consensus 168 ~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~-~g~~~ 215 (223)
++||++||++++++||..+.++|..++++++|++|++ +|++.
T Consensus 152 ------~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~ 194 (217)
T 1yar_H 152 ------EKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQ 194 (217)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEE
T ss_pred ------cCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEE
Confidence 7999999999999999999999998999999999999 88664
No 6
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2e-47 Score=313.77 Aligned_cols=189 Identities=26% Similarity=0.445 Sum_probs=181.5
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeC-eEEEccchhhHHHHHhcccCCCCCCCCCCCCCC
Q 027426 95 AQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 173 (223)
Q Consensus 95 a~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~ 173 (223)
++++++.+|.+|.+||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~------------- 147 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD------------- 147 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCC-------------
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcC-------------
Confidence 9999999988888999999999999986779999999999999999 99999999999999999965
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 174 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
++||++||++++++||..+.++|..++++++|++|+++|+++.
T Consensus 148 ~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l 190 (219)
T 3h4p_a 148 RDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIF 190 (219)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEc
Confidence 7999999999999999999999999999999999999997764
No 7
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.7e-46 Score=304.55 Aligned_cols=186 Identities=26% Similarity=0.434 Sum_probs=179.2
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+|||+|+++++|++||+.+|++.++++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeC-eEEEccchhhHHHHHhcccCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 174 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~ 174 (223)
+.+++.+|.+|.|||++++|+||||+ ++|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ +
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~-------------~ 146 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT-------------P 146 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC-------------T
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcC-------------C
Confidence 99999999888899999999999997 569999999999999999 99999999999999999965 7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027426 175 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 215 (223)
Q Consensus 175 ~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
+||++||++++++||..+.++|..++++++|++|+++|++.
T Consensus 147 ~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 187 (202)
T 1j2q_H 147 EIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQ 187 (202)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEE
Confidence 99999999999999999999999899999999999999765
No 8
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.1e-46 Score=304.62 Aligned_cols=190 Identities=19% Similarity=0.327 Sum_probs=180.4
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++++++++||+.+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 79999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc-C-CCceEEEEEEEEcC-CCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCC
Q 027426 95 AQLLSNTLYYKR-F-FPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~l~~~~~~~r-~-rP~~vs~lvaG~d~-~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
++.+++.+|.++ . +||++++|+||||+ +++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~----------- 149 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR----------- 149 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcC-----------
Confidence 999999997753 3 59999999999997 577999999999999999999999999999999999965
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 172 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 172 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
++||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 150 --~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~ 193 (198)
T 1ryp_K 150 --PDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVD 193 (198)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEEC
T ss_pred --CCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEec
Confidence 79999999999999999999999999999999999999987654
No 9
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=3e-46 Score=303.86 Aligned_cols=194 Identities=27% Similarity=0.385 Sum_probs=184.5
Q ss_pred cccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 027426 10 PYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
..+++|+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|++||+.+|++.+.++++.+++.|++++++ +
T Consensus 4 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~ 82 (205)
T 1ryp_H 4 GEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-P 82 (205)
T ss_dssp TCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 346789999999999999999999999998898999999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCC
Q 027426 90 SCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPA 169 (223)
Q Consensus 90 ~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~ 169 (223)
+++.+++.+++.+|.+|.+ |++++|+||+|++++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 83 ~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--------- 152 (205)
T 1ryp_H 83 STETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--------- 152 (205)
T ss_dssp CHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC---------
T ss_pred CHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccC---------
Confidence 9999999999999887755 999999999998677999999999999999999999999999999999965
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEe
Q 027426 170 QDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 218 (223)
Q Consensus 170 ~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 218 (223)
++||++||++++++||..+.++|..++++++|++|+++|++.+.+
T Consensus 153 ----~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 153 ----ENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 799999999999999999999999999999999999999987765
No 10
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=9.4e-47 Score=318.16 Aligned_cols=201 Identities=15% Similarity=0.236 Sum_probs=188.2
Q ss_pred CCCCCcCcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHH
Q 027426 3 KQHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQ 82 (223)
Q Consensus 3 ~~~~~~~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (223)
|+++++.|.. +|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++|+|++||+.+|++.|+++++.+++.|+
T Consensus 30 ~~~~~~~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~ 108 (266)
T 1g0u_M 30 PMVNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENA 108 (266)
T ss_dssp ----CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhh
Confidence 5688899887 599999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred H-----hcCCCCCHHHHHHHHHHHHhhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHH
Q 027426 83 H-----QHNKQMSCPGMAQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 155 (223)
Q Consensus 83 ~-----~~~~~~~~~~la~~l~~~~~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~L 155 (223)
+ +++++++++.+++.+++.+|++| .|||++++|+||+|++++|+||.+||+|++.++++.|+|+|+++++++|
T Consensus 109 ~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 188 (266)
T 1g0u_M 109 YDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 188 (266)
T ss_dssp TTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHH
T ss_pred hccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHH
Confidence 8 89999999999999999999887 7999999999999987679999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEEE
Q 027426 156 DNQLKSPSPLLLPAQDAVT-----PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKG-GIHREY 217 (223)
Q Consensus 156 e~~~~~~~~~~~~~~~~~~-----~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~-g~~~~~ 217 (223)
|+.|+ + +||++||++++++||..+.++|..++++++|++|+++ |+++..
T Consensus 189 e~~~~-------------~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~ 243 (266)
T 1g0u_M 189 RKVVD-------------RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKK 243 (266)
T ss_dssp TTTCS-------------SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEE
T ss_pred HHhhc-------------ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcC
Confidence 99975 6 8999999999999999999999999999999999999 887654
No 11
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.3e-46 Score=311.67 Aligned_cols=193 Identities=16% Similarity=0.239 Sum_probs=184.4
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHH-----hcC
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQH-----QHN 86 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~ 86 (223)
+++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++|+|++||..+|++.+.++++.+++.|++ +++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (233)
T 1ryp_N 5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE 84 (233)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence 557999999999999999999999999899999999999999999999999999999999999999999999 899
Q ss_pred CCCCHHHHHHHHHHHHhhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCC
Q 027426 87 KQMSCPGMAQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (223)
Q Consensus 87 ~~~~~~~la~~l~~~~~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~ 164 (223)
++++++.+++.+++.+|++| .|||++++|+||+|++++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 85 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~---- 160 (233)
T 1ryp_N 85 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD---- 160 (233)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS----
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhc----
Confidence 99999999999999999887 799999999999998767999999999999999999999999999999999965
Q ss_pred CCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEEE
Q 027426 165 LLLPAQDAVT-----PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKG-GIHREY 217 (223)
Q Consensus 165 ~~~~~~~~~~-----~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~-g~~~~~ 217 (223)
+ +||++||++++++||..+.++|..++++++|++|+++ |++...
T Consensus 161 ---------~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~ 210 (233)
T 1ryp_N 161 ---------RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKK 210 (233)
T ss_dssp ---------SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEE
T ss_pred ---------cccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcC
Confidence 6 8999999999999999999999999999999999999 887654
No 12
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.5e-46 Score=308.50 Aligned_cols=192 Identities=24% Similarity=0.323 Sum_probs=183.6
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHH-hcCCCCC
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQH-QHNKQMS 90 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~ 90 (223)
+++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++|++||+.+|++.+.++++.+++.|++ +++++++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (219)
T 1iru_N 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYS 84 (219)
T ss_dssp CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 567999999999999999999999999899999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHhhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCC
Q 027426 91 CPGMAQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP 168 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~ 168 (223)
++.+++.+++.+|++| .|||++++|+||+|+ ++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 85 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------- 155 (219)
T 1iru_N 85 PRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLE-------- 155 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcC--------
Confidence 9999999999999887 899999999999996 47999999999999999999999999999999999976
Q ss_pred CCCCCC--CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 169 AQDAVT--PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 169 ~~~~~~--~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
+ +||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 156 -----~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~ 201 (219)
T 1iru_N 156 -----KQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEG 201 (219)
T ss_dssp -----SCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcC
Confidence 6 9999999999999999999999999999999999999976654
No 13
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=8.2e-46 Score=301.19 Aligned_cols=191 Identities=23% Similarity=0.309 Sum_probs=181.7
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+|||+|+++++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999889899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++. ||++++|+||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~-------------~~ 146 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR-------------EG 146 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCC-------------TT
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcC-------------CC
Confidence 999999987764 9999999999998677999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeec
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMEL 220 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
||++||++++++||..+.++|..++++++|++|+++|.+.+.++.
T Consensus 147 ~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~ 191 (205)
T 1iru_H 147 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLG 191 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeCh
Confidence 999999999999999999999989999999999999987666553
No 14
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=5e-46 Score=301.58 Aligned_cols=190 Identities=21% Similarity=0.372 Sum_probs=179.8
Q ss_pred CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 15 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 15 g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+|+|||+++||||||+|+|.++|.++..++.+|||+|++++++++||+.+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hhhc-CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCC
Q 027426 95 AQLLSNTL-YYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 95 a~~l~~~~-~~~r-~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~ 172 (223)
++++++.+ +..+ .+||++++|+||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~------------ 148 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT------------ 148 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhccc------------
Confidence 99998876 5434 469999999999998678999999999999999999999999999999999965
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 173 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
++||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 149 -~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~ 192 (201)
T 1iru_K 149 -PTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLD 192 (201)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCC
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEee
Confidence 79999999999999999999999999999999999999988655
No 15
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=7.7e-46 Score=314.99 Aligned_cols=194 Identities=20% Similarity=0.242 Sum_probs=182.5
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||..+|++.+.++++.+++.|+++++++++
T Consensus 71 ~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~is 150 (287)
T 3nzj_K 71 KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS 150 (287)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred heccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCC
Q 027426 91 CPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~ 170 (223)
++.+++.+++++|.+|.+||++++|+||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 151 v~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~---------- 220 (287)
T 3nzj_K 151 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK---------- 220 (287)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCC----------
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhc----------
Confidence 9999999999999888779999999999997778999999999999999999999999999999999965
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 171 DAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 171 ~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
++||++||++++++||..+.++|..++++++|++|+++|+++..
T Consensus 221 ---~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~ 264 (287)
T 3nzj_K 221 ---WDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHG 264 (287)
T ss_dssp ---TTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeC
Confidence 79999999999999999999999999999999999999987654
No 16
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=3.6e-46 Score=310.84 Aligned_cols=196 Identities=19% Similarity=0.243 Sum_probs=179.7
Q ss_pred cCC-CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 12 DNN-GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 12 ~~~-g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+++ |+|+|||+++||||||+|+|.+ +.++..++.+|||+|+++|+|++||+.+|++.++++++.+++.|+++++++++
T Consensus 26 v~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~ 104 (243)
T 1ryp_A 26 TNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMP 104 (243)
T ss_dssp TTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 678 9999999999999999999999 56788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++++ |++| .|||+|++|+||||++++|+||.+||+|++.+++++|+|+++++++++||+.|++.+.
T Consensus 105 v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~-- 182 (243)
T 1ryp_A 105 CDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI-- 182 (243)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCS--
T ss_pred HHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhccc--
Confidence 999999999999 7777 7999999999999976789999999999999999999999999999999999762000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 215 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
...++||++||++++++||..+.++| .++.+++|++|+++|++.
T Consensus 183 ----~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~ 226 (243)
T 1ryp_A 183 ----DHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFT 226 (243)
T ss_dssp ----SSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEE
T ss_pred ----ccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEE
Confidence 00119999999999999999999999 689999999999999543
No 17
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.3e-45 Score=301.58 Aligned_cols=189 Identities=20% Similarity=0.245 Sum_probs=180.9
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+|||+|+++++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++.+|.++..||++++|+||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 147 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK-------------WD 147 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCC-------------TT
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCC-------------CC
Confidence 99999998887779999999999997677999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 148 ~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~ 189 (212)
T 1ryp_L 148 LSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHG 189 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEEC
Confidence 999999999999999999999999999999999999976643
No 18
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.2e-45 Score=298.41 Aligned_cols=188 Identities=24% Similarity=0.296 Sum_probs=179.6
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.+|.+||++++|+||||+ ++|+||.+||+|++.++++.|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~-------------~~ 146 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS-------------YD 146 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC-------------TT
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCC-------------CC
Confidence 99999999888789999999999996 56999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 147 ~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~ 188 (204)
T 1iru_L 147 LEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVS 188 (204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeC
Confidence 999999999999999999999989999999999999976543
No 19
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=3.1e-45 Score=303.37 Aligned_cols=187 Identities=20% Similarity=0.314 Sum_probs=178.4
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 69999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.+ .+||++++|+||+|++ +|+||.+||+|++.++++.|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~-~~p~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 145 (234)
T 3unf_H 81 RILRQTLFRY-QGHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ-------------PN 145 (234)
T ss_dssp HHHHHHHHHT-TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCC-------------SS
T ss_pred HHHHHHHHhc-CCCccEEEEEEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccC-------------CC
Confidence 9999998765 4699999999999974 6999999999999999999999999999999999964 79
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 146 ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~ 187 (234)
T 3unf_H 146 MTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQR 187 (234)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeC
Confidence 999999999999999999999999999999999999987665
No 20
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=3.4e-45 Score=307.38 Aligned_cols=189 Identities=23% Similarity=0.334 Sum_probs=175.5
Q ss_pred CcccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCC
Q 027426 9 SPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ 88 (223)
Q Consensus 9 ~~~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (223)
+.++++|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.+.++++.+++.|+++++++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 34578899999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCC
Q 027426 89 MSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP 168 (223)
Q Consensus 89 ~~~~~la~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~ 168 (223)
++++.+++.+++.+|.++ +||++++|+||+|++ +|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 103 ~~v~~~a~~l~~~l~~~~-~~~gv~llvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------- 172 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK-------- 172 (261)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--------
T ss_pred CCHHHHHHHHHHHHHHhc-CcccEEEEEEEEeCC-CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhc--------
Confidence 999999999999987653 699999999999975 5999999999999999999999999999999999964
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027426 169 AQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 169 ~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
++||++||++++++||..+.++|..++++++|++|+++|
T Consensus 173 -----~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 173 -----QDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp -----SSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred -----cCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence 799999999999999999999999999999999999999
No 21
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=5e-45 Score=304.04 Aligned_cols=189 Identities=21% Similarity=0.270 Sum_probs=177.7
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.++++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (244)
T 1ryp_C 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPV 107 (244)
T ss_dssp HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 67899999999999999999999999976668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--hh--cCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTLY--YK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~--~~--r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++ ++ +.|||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 180 (244)
T 1ryp_C 108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK------- 180 (244)
T ss_dssp HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhh-------
Confidence 999999999994 43 3789999999999996677999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc--CCCe
Q 027426 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN--KGGI 213 (223)
Q Consensus 168 ~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~--~~g~ 213 (223)
++||++||++++++||..+.++|..++++++|++|+ ++|.
T Consensus 181 ------~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~ 222 (244)
T 1ryp_C 181 ------DDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDG 222 (244)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSS
T ss_pred ------cCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCC
Confidence 799999999999999999999955578999999999 9986
No 22
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=5.1e-45 Score=304.35 Aligned_cols=192 Identities=18% Similarity=0.276 Sum_probs=179.5
Q ss_pred cCC-CCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 12 DNN-GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 12 ~~~-g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+++ |+|+|||+++||||||+|+|.+. .++..++.+|||+|+++|+|++||+.+|++.+.++++.+++.|+++++++++
T Consensus 32 v~~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 110 (246)
T 1iru_A 32 INQGGLTSVAVRGKDCAVIVTQKKVPD-KLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIP 110 (246)
T ss_dssp HHTTCCEEEEEECSSEEEEEEECCCCC-SSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCCCCEEEEEeCCEEEEEEeecCCC-cccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 445 99999999999999999999994 5788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++++ |+++ .|||+|++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 111 ~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~------ 184 (246)
T 1iru_A 111 VDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK------ 184 (246)
T ss_dssp HHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhc------
Confidence 999999999886 6665 799999999999997677999999999999999999999999999999999965
Q ss_pred CCCCCCCC--CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEe
Q 027426 167 LPAQDAVT--PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 218 (223)
Q Consensus 167 ~~~~~~~~--~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 218 (223)
+ +||++||++++++||..+.++| .++.+++|++|+++|+....+
T Consensus 185 -------~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l 230 (246)
T 1iru_A 185 -------KKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRIL 230 (246)
T ss_dssp -------SCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEEC
T ss_pred -------ccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEEC
Confidence 6 9999999999999999999999 789999999999999755444
No 23
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.4e-44 Score=297.44 Aligned_cols=187 Identities=23% Similarity=0.313 Sum_probs=178.2
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.++++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++ +||++++|+||+|+ ++|+||.+||+|++.++++.|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 145 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK-------------QD 145 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC-------------SS
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCC-------------CC
Confidence 99999987764 79999999999997 46999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG-IHREY 217 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~~~ 217 (223)
||++||++++++||..+.++|..++++++|++|+++| ++..+
T Consensus 146 ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~ 188 (222)
T 1ryp_I 146 LTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLR 188 (222)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEe
Confidence 9999999999999999999999899999999999999 87644
No 24
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=6.9e-45 Score=306.03 Aligned_cols=189 Identities=20% Similarity=0.220 Sum_probs=179.7
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.++++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (261)
T 1iru_C 28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPC 107 (261)
T ss_dssp HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 67899999999999999999999999988777779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc----CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~~r----~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++.++ .|||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 180 (261)
T 1iru_C 108 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK------- 180 (261)
T ss_dssp HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhc-------
Confidence 999999999996543 789999999999997677999999999999999999999999999999999964
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027426 168 PAQDAVT-PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 213 (223)
Q Consensus 168 ~~~~~~~-~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
+ +||++||++++++||..+.++|..++++++|++|+++|.
T Consensus 181 ------~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~ 221 (261)
T 1iru_C 181 ------EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG 221 (261)
T ss_dssp ------TTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSS
T ss_pred ------cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCC
Confidence 7 999999999999999999999999999999999999984
No 25
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=6.7e-45 Score=301.35 Aligned_cols=189 Identities=17% Similarity=0.254 Sum_probs=177.1
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+. .++..++.+|||+|+++++|++||+.+|++.+.++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 106 (233)
T 1iru_B 28 VAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPT 106 (233)
T ss_dssp HHTSCCEEEEECSSCEEEEEECCCCC-SSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEEecCCc-cccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 56899999999999999999999985 57888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++.+ |+++ .|||++++|+||||+ ++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 107 ~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~------- 178 (233)
T 1iru_B 107 AQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN------- 178 (233)
T ss_dssp HHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhc-------
Confidence 99999999999 5554 789999999999994 56999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEE
Q 027426 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 216 (223)
Q Consensus 168 ~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
++||++||++++++||..+.++| .++++++|++|+++|+++.
T Consensus 179 ------~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l 220 (233)
T 1iru_B 179 ------EDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRL 220 (233)
T ss_dssp ------TTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEEC
T ss_pred ------cCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEEC
Confidence 79999999999999999999999 6789999999999996643
No 26
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.1e-44 Score=300.09 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=175.6
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+++ ++..++.+||++|+++|+|++||+.+|++.+.++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI 109 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 678999999999999999999999997 6778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc----CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~~r----~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++..+ .|||++++|+||||+ ++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 110 ~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~------- 181 (233)
T 1yar_A 110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK------- 181 (233)
T ss_dssp HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhc-------
Confidence 999999999996432 689999999999997 56999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027426 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 168 ~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
++||++||++++++||..+.++|. ++++++|++|+++|
T Consensus 182 ------~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~ 219 (233)
T 1yar_A 182 ------ENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGN 219 (233)
T ss_dssp ------TTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTS
T ss_pred ------cCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCC
Confidence 799999999999999999999998 79999999999998
No 27
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=8.4e-45 Score=302.35 Aligned_cols=187 Identities=17% Similarity=0.188 Sum_probs=176.5
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|.++ .++.+|||+|+++|+|++||+.+|++.++++++.+++.|++++++++++
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 101 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV 101 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 678999999999999999999999999766 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh--c--------CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCC
Q 027426 92 PGMAQLLSNTLYYK--R--------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 92 ~~la~~l~~~~~~~--r--------~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~ 161 (223)
+.+++.++++++.+ + .|||++++|+||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~- 180 (242)
T 1ryp_E 102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH- 180 (242)
T ss_dssp HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhc-
Confidence 99999999988542 2 679999999999996677999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027426 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 213 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
++||++||++++++||..+.++ ..++.+++|++|+++|.
T Consensus 181 ------------~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~ 219 (242)
T 1ryp_E 181 ------------SSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDG 219 (242)
T ss_dssp ------------TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTE
T ss_pred ------------cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCC
Confidence 7999999999999999999999 56789999999999996
No 28
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=3e-44 Score=290.63 Aligned_cols=189 Identities=22% Similarity=0.310 Sum_probs=177.5
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+|||+|+++++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeC-eEEEccchhhHHHHHhcccCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 174 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~ 174 (223)
+.+++.+|.++ +||++++|+||+|++++|+||. |+|++.++. +.++|+|+++++++||+.|+ +
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~-------------~ 144 (199)
T 3unf_N 81 NVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYK-------------P 144 (199)
T ss_dssp HHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCC-------------S
T ss_pred HHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcC-------------C
Confidence 99999998765 6999999999999877899999 999987666 66679999999999999965 7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEeec
Q 027426 175 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMEL 220 (223)
Q Consensus 175 ~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
+||++||++++++||..+.++|..++++++|++|+++|++.+.++.
T Consensus 145 ~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~ 190 (199)
T 3unf_N 145 GMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 190 (199)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCc
Confidence 9999999999999999999999999999999999999988776653
No 29
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.5e-44 Score=300.63 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=175.9
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|..+ .++.+||++|+++|+|++||+.+|++.++++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV 109 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 678999999999999999999999999776 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhhc-------CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCC
Q 027426 92 PGMAQLLSNTL--YYKR-------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSP 162 (223)
Q Consensus 92 ~~la~~l~~~~--~~~r-------~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~ 162 (223)
+.+++.+++++ |+++ .|||++++|+||+| +++|+||.+||+|++.++++.|+|+|+++++++||+.|+
T Consensus 110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-- 186 (241)
T 1iru_E 110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH-- 186 (241)
T ss_dssp HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhc--
Confidence 99999999998 5443 57999999999999 567999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q 027426 163 SPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 213 (223)
Q Consensus 163 ~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
++||++||++++++||..+.++ ..++.+++|++|+++|.
T Consensus 187 -----------~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~ 225 (241)
T 1iru_E 187 -----------KSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN 225 (241)
T ss_dssp -----------TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC
T ss_pred -----------cCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC
Confidence 7999999999999999999999 66899999999999986
No 30
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=5.2e-44 Score=297.43 Aligned_cols=188 Identities=16% Similarity=0.253 Sum_probs=174.7
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.+.++++.+++.|++++++++++
T Consensus 25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (241)
T 1ryp_D 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTV 104 (241)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 67899999999999999999999999977766689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh--c--CCCceEEEEEEEEcCC-CceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 92 PGMAQLLSNTLYYK--R--FFPYYSFNVLGGLDNE-GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 92 ~~la~~l~~~~~~~--r--~rP~~vs~lvaG~d~~-~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
+.+++.+++++|.. + .|||++++|+||||++ ++|+||.+||+|++.++++.|+|+|+++++++||+.|+.
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~----- 179 (241)
T 1ryp_D 105 EYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDR----- 179 (241)
T ss_dssp HHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCT-----
T ss_pred HHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhc-----
Confidence 99999999999764 2 5899999999999975 679999999999999999999999999999999999620
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
.+++||++||++++++||..+.+ .++++++|++|+++|
T Consensus 180 -----~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~ 217 (241)
T 1ryp_D 180 -----KEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDS 217 (241)
T ss_dssp -----TSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTT
T ss_pred -----ccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCC
Confidence 03799999999999999999986 578999999999997
No 31
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=9.8e-44 Score=294.56 Aligned_cols=187 Identities=22% Similarity=0.317 Sum_probs=177.3
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027426 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++ +||++++|+||+|++ +|+||.+||+|++.++++.|+|+|++.++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 145 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR-------------PD 145 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECSS-CEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCC-------------TT
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcCC-CCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhcc-------------CC
Confidence 99999988664 699999999999974 5999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEE
Q 027426 176 LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 217 (223)
Q Consensus 176 ~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
||++||++++++||..+.++|..++++++|++|+++|++..+
T Consensus 146 ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~ 187 (234)
T 1iru_I 146 MEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLR 187 (234)
T ss_dssp CCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEc
Confidence 999999999999999999999989999999999999987443
No 32
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.2e-44 Score=301.82 Aligned_cols=186 Identities=12% Similarity=0.101 Sum_probs=175.5
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|.++ .++.+|||+|+++|+|++||+.+|++.++++++.+++.|++++++++++
T Consensus 30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 108 (254)
T 1iru_G 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPL 108 (254)
T ss_dssp HHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 678999999999999999999999999776 4889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc----CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~~r----~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++.++ .|||+|++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 109 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 181 (254)
T 1iru_G 109 KHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM------- 181 (254)
T ss_dssp HHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCG-------
T ss_pred HHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhcc-------
Confidence 999999999995543 699999999999996677999999999999999999999999999999999954
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q 027426 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKG 211 (223)
Q Consensus 168 ~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~ 211 (223)
++||++||++++++||+.+.++|..++.+++|++|+++
T Consensus 182 ------~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~ 219 (254)
T 1iru_G 182 ------KEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGEL 219 (254)
T ss_dssp ------GGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred ------CCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcC
Confidence 69999999999999999999888778889999999988
No 33
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=4.3e-44 Score=298.43 Aligned_cols=194 Identities=20% Similarity=0.215 Sum_probs=177.7
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|.++. ++.+|||+|+++|+|++||+.+|++.++++++.+++.|++++++++++
T Consensus 27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 105 (244)
T 1ryp_G 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI 105 (244)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEECCCTTBCT-TTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHCCCCEEEEEECCEEEEEEecccCCCCccc-cccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 6789999999999999999999999997664 456999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--hhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~--~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++.++ +++ .|||++++|+||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.+++
T Consensus 106 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~------ 178 (244)
T 1ryp_G 106 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDH------ 178 (244)
T ss_dssp HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhh------
Confidence 999999999994 333 689999999999996 569999999999999999999999999999999997221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC---CCeEEEE
Q 027426 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK---GGIHREY 217 (223)
Q Consensus 168 ~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~---~g~~~~~ 217 (223)
|+++||++||++++++||..+.++|..++.+++|++|++ +|++...
T Consensus 179 ----~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~ 227 (244)
T 1ryp_G 179 ----HPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFV 227 (244)
T ss_dssp ----CTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEEC
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeC
Confidence 347999999999999999999999998999999999998 8887643
No 34
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=9.2e-44 Score=303.15 Aligned_cols=193 Identities=22% Similarity=0.265 Sum_probs=181.0
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||+.+|++.++++++.+++.|+++++++++
T Consensus 61 Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~is 140 (294)
T 1q5r_H 61 LAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 140 (294)
T ss_dssp CSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCC
Confidence 47889999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc---CCCceEEEEEEEEcCCCc-----eEEEEECCCCceeee--CeEEEccchhhHHHHHhcccC
Q 027426 91 CPGMAQLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLK 160 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r---~rP~~vs~lvaG~d~~~~-----~~Ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~ 160 (223)
++.+++.+++++|.++ .|||+|++||+|||++++ |+||.+||+|++.++ ++.|+|+|+++++++||+.|+
T Consensus 141 v~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~ 220 (294)
T 1q5r_H 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 220 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhcc
Confidence 9999999999997654 689999999999998756 999999999999999 899999999999999999965
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCc--E-----EEEEEcCCCeEEE
Q 027426 161 SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK--L-----EIVVLNKGGIHRE 216 (223)
Q Consensus 161 ~~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~--i-----~i~~i~~~g~~~~ 216 (223)
++||++||++++++||..+.++|..+++. + +|++|+++|+++.
T Consensus 221 -------------~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l 270 (294)
T 1q5r_H 221 -------------PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHV 270 (294)
T ss_dssp -------------SSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEEC
T ss_pred -------------CCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEc
Confidence 79999999999999999999999887653 6 9999999997653
No 35
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.7e-43 Score=293.27 Aligned_cols=188 Identities=22% Similarity=0.267 Sum_probs=176.3
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMA 95 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++.+++.+|||+|+++++|++||+.+|++.++++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc---CCCceEEEEEEEEcCCCc-----eEEEEECCCCceeee--CeEEEccchhhHHHHHhcccCCCCCC
Q 027426 96 QLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 96 ~~l~~~~~~~r---~rP~~vs~lvaG~d~~~~-----~~Ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~ 165 (223)
+.++++++.++ .|||++++|+||||++++ |+||.+||+|++.++ ++.|+|+|+++++++||+.|+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~----- 155 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS----- 155 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC-----
Confidence 99999997643 789999999999998756 999999999999999 899999999999999999964
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCc--E-----EEEEEcCCCeEEE
Q 027426 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK--L-----EIVVLNKGGIHRE 216 (223)
Q Consensus 166 ~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~--i-----~i~~i~~~g~~~~ 216 (223)
++||++||++++++||..+.++|..+++. + +|++|+++|++..
T Consensus 156 --------~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l 205 (235)
T 1q5q_H 156 --------PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHV 205 (235)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEEC
T ss_pred --------CCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEe
Confidence 79999999999999999999999877652 2 9999999997653
No 36
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1e-43 Score=296.82 Aligned_cols=184 Identities=18% Similarity=0.311 Sum_probs=173.2
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++| ++..++.+|||+|+++|+|++||+.+|++.++++++.+++.|++++++++++
T Consensus 26 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (248)
T 1iru_D 26 VKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTV 104 (248)
T ss_dssp HHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 678999999999999999999999998 5777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh--hc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~--~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++. ++ .|||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~------- 177 (248)
T 1iru_D 105 EYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT------- 177 (248)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCC-------
T ss_pred HHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhc-------
Confidence 9999999999954 33 689999999999996677999999999999999999999999999999999964
Q ss_pred CCCCCCCCC--CHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027426 168 PAQDAVTPL--SEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 168 ~~~~~~~~~--s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
++| |++||++++++||..+.+ .++++++|++|+++|
T Consensus 178 ------~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g 215 (248)
T 1iru_D 178 ------DEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ 215 (248)
T ss_dssp ------SSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS
T ss_pred ------ccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC
Confidence 799 999999999999998887 468899999999998
No 37
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.8e-43 Score=292.77 Aligned_cols=187 Identities=18% Similarity=0.215 Sum_probs=172.9
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|.. ++.+|||+|+++|+|++||+.+|++.+.++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (233)
T 1ryp_F 28 IKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAV 104 (233)
T ss_dssp HHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 57899999999999999999999999842 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++++ |+++ .|||++++|+||||+ .+|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 105 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~------- 176 (233)
T 1ryp_F 105 ERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD------- 176 (233)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhc-------
Confidence 99999999999 4433 689999999999997 56999999999999999999999999999999999975
Q ss_pred CCCCCCC--CC--CHHHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCC-CeEEE
Q 027426 168 PAQDAVT--PL--SEAEAVDLVKTCFASATERD-IYTGDKLEIVVLNKG-GIHRE 216 (223)
Q Consensus 168 ~~~~~~~--~~--s~~eai~l~~~~l~~~~~~d-~~~~~~i~i~~i~~~-g~~~~ 216 (223)
+ +| |++||+++++++|..+. +| ..++.+++|++|+++ |++..
T Consensus 177 ------~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l 224 (233)
T 1ryp_F 177 ------TFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIY 224 (233)
T ss_dssp ------HHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEE
T ss_pred ------cccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEEC
Confidence 5 89 99999999999999999 77 568999999999999 55443
No 38
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=6.7e-43 Score=291.57 Aligned_cols=187 Identities=17% Similarity=0.253 Sum_probs=174.2
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+++|+|++||+.+|++.++++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITV 109 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 678999999999999999999999997 4557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~--~~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++.+ |+++ .|||++++|+||+| ++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 110 ~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 180 (246)
T 1j2p_A 110 KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR------- 180 (246)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhc-------
Confidence 99999999999 4444 68999999999999 56999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc-CC-CeEE
Q 027426 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN-KG-GIHR 215 (223)
Q Consensus 168 ~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~-~~-g~~~ 215 (223)
++||++||++++++||..+.++ ..++++++|++|+ ++ |++.
T Consensus 181 ------~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~ 223 (246)
T 1j2p_A 181 ------DDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKE 223 (246)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEE
T ss_pred ------cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEE
Confidence 7999999999999999999998 7789999999999 64 5554
No 39
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.1e-44 Score=300.53 Aligned_cols=191 Identities=20% Similarity=0.333 Sum_probs=176.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|+|.+++ ++..++.+|||+|+++|+|++||+.+|++.++++++.+++.|++.++++++
T Consensus 34 av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~ 112 (264)
T 3h4p_A 34 AVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEIS 112 (264)
T ss_dssp HHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence 3568999999999999999999999997 677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--hc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~--~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++. ++ .|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 113 v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------ 185 (264)
T 3h4p_A 113 IEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR------ 185 (264)
T ss_dssp HHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhcc------
Confidence 99999999999843 33 689999999999996 56999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEEEe
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 218 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 218 (223)
++||++||++++++||..+.++ .++++++|++|++++.....+
T Consensus 186 -------~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l 228 (264)
T 3h4p_A 186 -------DDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKI 228 (264)
T ss_dssp -------TTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEEC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEEC
Confidence 7999999999999999999987 688999999999876444443
No 40
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.7e-43 Score=300.62 Aligned_cols=188 Identities=20% Similarity=0.202 Sum_probs=174.2
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|+|.++|.++. ++.+|||+|+++|+|++||+.+|++.|+++++.+++.|+++++++++
T Consensus 30 Av~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~ 108 (288)
T 3nzj_F 30 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIP 108 (288)
T ss_dssp HHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 46789999999999999999999999996654 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh----cCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~----r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.++++++++++.+ +.|||+|++||||||++ +|+||.+||+|++.+++++|+|+|+++++++||+.++.
T Consensus 109 v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~----- 182 (288)
T 3nzj_F 109 IPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDH----- 182 (288)
T ss_dssp HHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT-EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCC-CCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccc-----
Confidence 999999999999543 27899999999999974 59999999999999999999999999999999999321
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 210 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~ 210 (223)
|+++||++||++++++||..+.+++..++.+++|++|++
T Consensus 183 -----~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 183 -----HPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp -----CTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred -----cCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 237999999999999999999999988888999999998
No 41
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2.8e-43 Score=296.50 Aligned_cols=189 Identities=15% Similarity=0.186 Sum_probs=174.0
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|. .++.+|||+|+++|+|++||+.+|++.++++++.+++.|++++++++++
T Consensus 29 v~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v 105 (263)
T 1iru_F 29 VKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV 105 (263)
T ss_dssp HHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 5679999999999999999999999984 2588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--hhc--CCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 92 PGMAQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~--~~r--~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++ +++ .|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+.
T Consensus 106 ~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~------ 178 (263)
T 1iru_F 106 SRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE------ 178 (263)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcc------
Confidence 999999999995 332 689999999999997 569999999999999999999999999999999999761
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCC-CeEE
Q 027426 168 PAQDAVTPLSEAEAVDLVKTCFASATERD-IYTGDKLEIVVLNKG-GIHR 215 (223)
Q Consensus 168 ~~~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~~i~i~~i~~~-g~~~ 215 (223)
.++||++||++++++||..+.++| ..++.+++|++|+++ +++.
T Consensus 179 -----~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~ 223 (263)
T 1iru_F 179 -----FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTI 223 (263)
T ss_dssp -----HTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEE
T ss_pred -----cCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEE
Confidence 129999999999999999999999 478999999999999 4443
No 42
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.1e-42 Score=290.01 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=163.1
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcC-CCCC
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMS 90 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~ 90 (223)
+++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|+.+|++.|.+.++.+++.|++.++ ++++
T Consensus 24 v~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~ 95 (248)
T 3mi0_A 24 IARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVT 95 (248)
T ss_dssp HHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCC
T ss_pred HhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 56899999999999999999999 35789999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHH---hhhcCCCceEEEEEEEEcC---CCceEEEEECCCCceee-eCeEEEccchhhHHHHHhcccCCCC
Q 027426 91 CPGMAQLLSNTL---YYKRFFPYYSFNVLGGLDN---EGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPS 163 (223)
Q Consensus 91 ~~~la~~l~~~~---~~~r~rP~~vs~lvaG~d~---~~~~~Ly~id~~G~~~~-~~~~aiG~g~~~a~~~Le~~~~~~~ 163 (223)
++.+++.+++.+ |+++.|||+|++||||||+ +++|+||.+||+|++.+ ++++|+|+|++.++++||++|+
T Consensus 96 v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~--- 172 (248)
T 3mi0_A 96 GRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA--- 172 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcC---
Confidence 999999999554 6667899999999999997 46799999999999995 9999999999999999999965
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------hcccccCCcEEEEEEcCCC
Q 027426 164 PLLLPAQDAVTPLSEAEAVDLVKTCFASAT-------ERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 164 ~~~~~~~~~~~~~s~~eai~l~~~~l~~~~-------~~d~~~~~~i~i~~i~~~g 212 (223)
++||++||++++++||..+. +++ .++.+++|++|+++|
T Consensus 173 ----------~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g 217 (248)
T 3mi0_A 173 ----------ENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANR 217 (248)
T ss_dssp ----------TTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTS
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCC
Confidence 79999999999999999999 554 578899999999998
No 43
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=4.3e-43 Score=298.75 Aligned_cols=192 Identities=21% Similarity=0.279 Sum_probs=160.6
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++|++||..+|++.++++++.+++.|++.++.++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 77899999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc---CCCceEEEEEEEEcCCCc-----eEEEEECCCCcee--eeCeEEEccchhhHHHHHhcccCC
Q 027426 92 PGMAQLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYE--RVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 92 ~~la~~l~~~~~~~r---~rP~~vs~lvaG~d~~~~-----~~Ly~id~~G~~~--~~~~~aiG~g~~~a~~~Le~~~~~ 161 (223)
+.+++.+++++|.++ .|||+|++|+||||++++ |+||.+||+|++. ++++.|+|+|+++++++||+.|+
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~- 212 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS- 212 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcC-
Confidence 999999999997654 579999999999998766 9999999999999 88999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCc--E-----EEEEEcCCCeEEE
Q 027426 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK--L-----EIVVLNKGGIHRE 216 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~--i-----~i~~i~~~g~~~~ 216 (223)
++||++||++++++||..+.++|..+++. + +|++|+++|+++.
T Consensus 213 ------------~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l 262 (291)
T 2jay_A 213 ------------QVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDV 262 (291)
T ss_dssp ------------GCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEEC
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEc
Confidence 69999999999999999999999877653 2 6999999997653
No 44
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=6.4e-43 Score=292.33 Aligned_cols=186 Identities=18% Similarity=0.247 Sum_probs=173.2
Q ss_pred cCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHH-HHHhcCCCCC
Q 027426 12 DNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLI-YQHQHNKQMS 90 (223)
Q Consensus 12 ~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~ 90 (223)
+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++|+|++||..+|++.++++++.+++. |+..++.+++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (250)
T 1ryp_B 28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP 106 (250)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5789999999999999999999998 5578888999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHh--hh--cCCCceEEEEEEEEcCCCceEEEEECCCCceeeeCeEEEccchhhHHHHHhcccCCCCCCC
Q 027426 91 CPGMAQLLSNTLY--YK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~--~~--r~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++++. .+ ++|||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 107 ~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------ 180 (250)
T 1ryp_B 107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWN------ 180 (250)
T ss_dssp HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhc------
Confidence 9999999998883 33 3689999999999998778999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q 027426 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 167 ~~~~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
++||++||++++++||..+.+++. ++++++|++|+++|
T Consensus 181 -------~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 181 -------DELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN 218 (250)
T ss_dssp -------TTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred -------cCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence 799999999999999999998865 79999999999973
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=9.9e-42 Score=286.41 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=164.8
Q ss_pred ccCCCCeEEEEEcCCEEEEeEecccccCceeeecCcCceEEccCceEEeecCChhHHHHHHHHHHHHHHHHHHhcC-CCC
Q 027426 11 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (223)
Q Consensus 11 ~~~~g~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (223)
.+++|+|+|||+++||||||+|+| +++.+|||+|+++|+|++||+.+|++.|+++++.+++.|++.++ +++
T Consensus 23 av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i 94 (259)
T 1q5q_A 23 GIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDV 94 (259)
T ss_dssp HHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 357899999999999999999998 26789999999999999999999999999999999999999988 499
Q ss_pred CHHHHHHHHHHHH---hhhcCCCceEEEEEEEEc--C-CCceEEEEECCCCcee-eeCeEEEccchhhHHHHHhcccCCC
Q 027426 90 SCPGMAQLLSNTL---YYKRFFPYYSFNVLGGLD--N-EGKGCVYTYDAVGSYE-RVGYSSQGSGSTLIMPFLDNQLKSP 162 (223)
Q Consensus 90 ~~~~la~~l~~~~---~~~r~rP~~vs~lvaG~d--~-~~~~~Ly~id~~G~~~-~~~~~aiG~g~~~a~~~Le~~~~~~ 162 (223)
+++.+++.+++.+ |+.+.|||+|++|||||| + +++|+||.+||+|++. +++++|+|++++.++++||+.|+
T Consensus 95 ~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~-- 172 (259)
T 1q5q_A 95 TGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR-- 172 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhcc--
Confidence 9999999999963 766789999999999999 3 5679999999999999 88999999999999999999965
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-----hcccccCCcEEEEEEcCCC
Q 027426 163 SPLLLPAQDAVTPLSEAEAVDLVKTCFASAT-----ERDIYTGDKLEIVVLNKGG 212 (223)
Q Consensus 163 ~~~~~~~~~~~~~~s~~eai~l~~~~l~~~~-----~~d~~~~~~i~i~~i~~~g 212 (223)
++||++||++++++||..+. ++|. ++.+++|++|+++|
T Consensus 173 -----------~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~ 215 (259)
T 1q5q_A 173 -----------ADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSR 215 (259)
T ss_dssp -----------TTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTS
T ss_pred -----------CCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCC
Confidence 79999999999999999998 8998 89999999999994
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=4.1e-37 Score=245.24 Aligned_cols=170 Identities=17% Similarity=0.203 Sum_probs=150.8
Q ss_pred CCCCeEEEEEcCCEEEEeEecccccCce-eeecCcCceEEc-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027426 13 NNGGTCVAIAGADYCVIAADTRMSTGYS-ILTRDYSKICKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 13 ~~g~t~vgi~~~dgVvlaad~~~~~g~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+|||+| +++++|++||..+|++.+.++++.+++.|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 5799999999999999999999999877 999999999999 999999999999999999999999999987 3 23
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEEEEcCCCceEEEEECCCCceeee--CeEEEccchhhHHHHHhcccCCCCCCCC
Q 027426 91 CPGMAQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r-~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~~~~~ 167 (223)
+..+ ..+++.+++.+ .|||++++|++ | +|+||.+||+|++.++ ++.|+|+|+++++++||+.|+
T Consensus 78 ~~~~-~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~------- 144 (180)
T 2z3b_A 78 KRAA-VELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKK------- 144 (180)
T ss_dssp HHHH-HHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHH-------
T ss_pred HHHH-HHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhh-------
Confidence 3333 34566665444 67999999999 4 3899999999999984 899999999999999999975
Q ss_pred CCCCCCC---CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q 027426 168 PAQDAVT---PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN 209 (223)
Q Consensus 168 ~~~~~~~---~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~ 209 (223)
+ +||.+| ++.+||..+.++|..++++++|.+|+
T Consensus 145 ------~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 145 ------HAGESMSASE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp ------HHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred ------ccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 5 899999 46799999999999999999999983
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=4.1e-36 Score=237.54 Aligned_cols=167 Identities=20% Similarity=0.251 Sum_probs=149.0
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEc-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.++|.++.+++.+|||+| ++++++++||+.+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999989999999999999 99999999999999999999999999988743 35666
Q ss_pred HHHHHHHHhhhc-CCCceEEEEEEEEcCCCceEEEEECCCCceeeeC--eEEEccchhhHHHHHhcccCCCCCCCCCCCC
Q 027426 95 AQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG--YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~l~~~~~~~r-~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~--~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~~ 171 (223)
++. .+.+++++ .|||++++|++ | +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+.
T Consensus 76 ~~l-~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~---------- 139 (171)
T 1m4y_A 76 VEL-AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN---------- 139 (171)
T ss_dssp HHH-HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH----------
T ss_pred HHH-HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc----------
Confidence 655 44666666 56899999988 5 59999999999999988 999999999999999999751
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q 027426 172 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 208 (223)
Q Consensus 172 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i 208 (223)
++||. ++++++||+.+.+||..++++++|.++
T Consensus 140 --~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 140 --TDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp --CCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred --CCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 58997 678999999999999999999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=6.2e-36 Score=237.16 Aligned_cols=168 Identities=19% Similarity=0.199 Sum_probs=151.0
Q ss_pred CeEEEEEcCCEEEEeEecccccCceeeecCcCceEEc-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027426 16 GTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGM 94 (223)
Q Consensus 16 ~t~vgi~~~dgVvlaad~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.++|.++.+++.+|||+| ++++++++||+.+|++.+.++++.+++.|+. ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999988999999999999 9999999999999999999999999999874 55666
Q ss_pred HHHHHHHHhhhc-CCCceEEEEEEEEcCCCceEEEEECCCCceeeeC---eEEEccchhhHHHHHhcccCCCCCCCCCCC
Q 027426 95 AQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG---YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 95 a~~l~~~~~~~r-~rP~~vs~lvaG~d~~~~~~Ly~id~~G~~~~~~---~~aiG~g~~~a~~~Le~~~~~~~~~~~~~~ 170 (223)
+..+++.++.+| .||+ +++++|+| +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+.
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~--------- 140 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN--------- 140 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc---------
Confidence 777888877766 4575 46777887 49999999999999988 999999999999999999751
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q 027426 171 DAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLN 209 (223)
Q Consensus 171 ~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~ 209 (223)
++||.+ +++++||+.+.++|..++++++|++|+
T Consensus 141 ---~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 141 ---TELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp ---CCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred ---CCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 599955 799999999999999999999999985
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=40.58 E-value=52 Score=25.45 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027426 173 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 215 (223)
Q Consensus 173 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
.+.+++++|.+++..++..+.++. .++.|.+++..|.-.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G~ll 100 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNGNTL 100 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCCCEE
Confidence 468999999999999999998853 489999999888543
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=37.77 E-value=32 Score=25.18 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q 027426 174 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 215 (223)
Q Consensus 174 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
+.+|+++|.+++..+...+.++ +.++.|.+++..|--.
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll 47 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTL 47 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEE
Confidence 5789999999999999998875 3589999999888543
No 51
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=20.38 E-value=1.2e+02 Score=19.36 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q 027426 175 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIH 214 (223)
Q Consensus 175 ~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~ 214 (223)
.|+.+||+....+.|..+..+-....+.-.+.+|+-.|.+
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~h 46 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNH 46 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 6999999999998888776411111234467888877753
No 52
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=20.38 E-value=1.1e+02 Score=19.19 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcc
Q 027426 175 PLSEAEAVDLVKTCFASATERD 196 (223)
Q Consensus 175 ~~s~~eai~l~~~~l~~~~~~d 196 (223)
+||.++|.++.++.++..+-+|
T Consensus 24 ~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 24 NMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887665
Done!