BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027427
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 2 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 61
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 62 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 121
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 122 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 179
Query: 209 DFSSDSR 215
F + R
Sbjct: 180 AFYTTDR 186
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L NC + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYNCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 16 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 67
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 68 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 126
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 127 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 184
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 185 GVEDAFSFTSK 195
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRADMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYECPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ-----SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA 144
+ H+++YL+ LQ + IE L P + ++ + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCP----ATEGIFDYAAAIGGATITA 122
Query: 145 KLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAH 201
G AIN GG+HH DE GFC D L I ++ R++ +DLD H
Sbjct: 123 AQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLH 180
Query: 202 QGNGHEKDFSSDSR 215
G+G E FS S+
Sbjct: 181 HGDGVEDAFSFTSK 194
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ-----SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA 144
+ H+++YL+ LQ + IE L P + ++ + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCP----ATEGIFDYAAAIGGATITA 122
Query: 145 KLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAH 201
G AIN GG+HH DE GFC D L I ++ R++ +DLD H
Sbjct: 123 AQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLH 180
Query: 202 QGNGHEKDFSSDSR 215
G+G E FS S+
Sbjct: 181 HGDGVEDAFSFTSK 194
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYACPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+H DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHAAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 52 KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111
K HP + + +F + +D+ +++ A+KE+LL+ H+E Y+ +L + +
Sbjct: 19 KNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCV 78
Query: 112 ----IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADE 167
E + + N V + G T+ A + + A N GG HH
Sbjct: 79 PKGAREKYNIGGYENP-VSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSR 137
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
GFC + ++ I Y + R++ IDLDAH +G ++ F
Sbjct: 138 ANGFCYINNPAVGIEY-LRKKGFKRILYIDLDAHHCDGVQEAF 179
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 52 KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111
K HP + + +F + +D+ +++ A+KE+LL+ H+E Y+ +L + +
Sbjct: 19 KNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERSQSV 78
Query: 112 ----IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADE 167
E + + N V + G T+ A + + A N GG HH
Sbjct: 79 PKGAREKYNIGGYENP-VSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSR 137
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
GFC + ++ I Y + R++ IDLDAH +G ++ F
Sbjct: 138 ANGFCYINNPAVGIEY-LRKKGFKRILYIDLDAHHCDGVQEAF 179
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 7/182 (3%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDY 66
Query: 99 LKSLQSSPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWA 153
+ LQ ++ + F +C V + + G ++ A + A
Sbjct: 67 IDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIA 126
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
IN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 127 INWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLT 184
Query: 214 SR 215
R
Sbjct: 185 DR 186
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Z|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C10|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
Length = 423
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 39/237 (16%)
Query: 14 ETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFL------GIEKLHPFDSSKWGRICQF 67
E + R+LSS + P LP YD L G HP + + I
Sbjct: 18 EPASQARVLSSS---ETPARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSR 74
Query: 68 LSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQR 127
L G + + +AS E+L VHSE ++ ++P + ++ +A L QR
Sbjct: 75 LQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLA---GLLAQR 131
Query: 128 K-VLYP--------------------FRKQVGG-TILAAKLAK---ERGWAINVGGGFHH 162
V+ P R G T LA K+A + G+A+ G HH
Sbjct: 132 MFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HH 190
Query: 163 CSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLY 219
GFC + +++ Q S+++I+D D H GNG ++ F D S LY
Sbjct: 191 ADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDP-SVLY 246
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|B Chain B, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|C Chain C, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|D Chain D, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ1|A Chain A, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|B Chain B, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|C Chain C, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|D Chain D, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ3|A Chain A, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|B Chain B, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|C Chain C, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|D Chain D, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|2GH6|A Chain A, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|B Chain B, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|C Chain C, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|D Chain D, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
Length = 369
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HP D+ + R + + + G ++ + + A+ D+L HS ++L++++ N+ +
Sbjct: 39 HP-DTKR--RFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGD 95
Query: 114 VPP-VALFPNCLVQRKVLYPFRKQVGGTI-LAAKLAK---ERGWAINVGGGFHHCSADEG 168
+ + N ++ R GG + L ++A G+A+ V HH +
Sbjct: 96 TGDGITMMGNGGLEIA-----RLSAGGAVELTRRVATGELSAGYAL-VNPPGHHAPHNAA 149
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
GFC + + S+ YA L + RV I+D D H GNG + + +D
Sbjct: 150 MGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWND 194
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|B Chain B, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|C Chain C, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|D Chain D, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
Length = 375
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HP D+ + R + + + G ++ + + A+ D+L HS ++L++++ N+ +
Sbjct: 45 HP-DTKR--RFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGD 101
Query: 114 VPP-VALFPNCLVQRKVLYPFRKQVGGTI-LAAKLAK---ERGWAINVGGGFHHCSADEG 168
+ + N ++ R GG + L ++A G+A+ V HH +
Sbjct: 102 TGDGITMMGNGGLEIA-----RLSAGGAVELTRRVATGELSAGYAL-VNPPGHHAPHNAA 155
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
GFC + + S+ YA L + RV I+D D H GNG + + +D
Sbjct: 156 MGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWND 200
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 29/195 (14%)
Query: 49 GIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN- 107
G HP + + I L G K + +A+ E+L VHSE++ ++P
Sbjct: 26 GSSSSHPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHSEAHTLLYGTNPLN 85
Query: 108 -------------VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAI 154
S+ + +P + V ++ G LA E + +
Sbjct: 86 RQKLDSKKLLGSLASVFVRLPCGGVG----VDSDTIWNEVHSAGAARLAVGCVVELVFKV 141
Query: 155 NVG---GGF-------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G GF HH GFC + +++ +L++S+++I+D D H GN
Sbjct: 142 ATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGN 201
Query: 205 GHEKDFSSDSRSCLY 219
G ++ F SD S LY
Sbjct: 202 GTQQAFYSDP-SVLY 215
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 29/195 (14%)
Query: 49 GIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN- 107
G HP + + I L G K + +A+ E+L VHSE++ ++P
Sbjct: 26 GSSSSHPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHSEAHTLLYGTNPLN 85
Query: 108 -------------VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAI 154
S+ + +P + V ++ G LA E + +
Sbjct: 86 RQKLDSKKLLGSLASVFVRLPCGGVG----VDSDTIWNEVHSAGAARLAVGCVVELVFKV 141
Query: 155 NVG---GGF-------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G GF HH GFC + +++ +L++S+++I+D D H GN
Sbjct: 142 ATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGN 201
Query: 205 GHEKDFSSDSRSCLY 219
G ++ F SD S LY
Sbjct: 202 GTQQAFYSDP-SVLY 215
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 29/195 (14%)
Query: 49 GIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN- 107
G HP + + I L G K + +A+ E+L VHSE++ ++P
Sbjct: 26 GSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLN 85
Query: 108 -------------VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAI 154
S+ + +P + V ++ G LA E + +
Sbjct: 86 RQKLDSKKLLGSLASVFVRLPCGGVG----VDSDTIWNEVHSAGAARLAVGCVVELVFKV 141
Query: 155 NVG---GGF-------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G GF HH GFC + +++ +L++S+++I+D D H GN
Sbjct: 142 ATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGN 201
Query: 205 GHEKDFSSDSRSCLY 219
G ++ F SD S LY
Sbjct: 202 GTQQAFYSDP-SVLY 215
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 29/195 (14%)
Query: 49 GIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN- 107
G HP + + I L G K + +A+ E+L VHSE++ ++P
Sbjct: 26 GSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLN 85
Query: 108 -------------VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAI 154
S+ + +P + V ++ G LA E + +
Sbjct: 86 RQKLDSKKLLGSLASVFVRLPCGGVG----VDSDTIWNEVHSAGAARLAVGCVVELVFKV 141
Query: 155 NVG---GGF-------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G GF HH GFC + +++ +L++S+++I+D D H GN
Sbjct: 142 ATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGN 201
Query: 205 GHEKDFSSDSRSCLY 219
G ++ F SD S LY
Sbjct: 202 GTQQAFYSDP-SVLY 215
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|B Chain B, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|C Chain C, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|D Chain D, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|E Chain E, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|F Chain F, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|G Chain G, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|H Chain H, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|I Chain I, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|J Chain J, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|K Chain K, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|L Chain L, Crystal Structure Of Apah Complexed With M344
pdb|3Q9F|A Chain A, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|B Chain B, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|C Chain C, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|D Chain D, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|E Chain E, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|F Chain F, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|G Chain G, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|H Chain H, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|I Chain I, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|J Chain J, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|K Chain K, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|L Chain L, Crystal Structure Of Apah Complexed With Caps
Length = 341
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 42/212 (19%)
Query: 35 LPLIYSPDYDI-----SFLGIEKLHPFDS---SKWGRICQFLSSEGFLDKNCIVEPLEAS 86
+ +I+S D+ + G E + PF++ ++W I + GF D +V P
Sbjct: 1 MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEW--ILAAVKEAGFDD---VVAPARHG 55
Query: 87 KEDLLVVHSESYLKSLQSSPNVSIIIEVPPVAL---FPNCLVQRKVLYPFRKQVGGTILA 143
E +L VH YL L+++ + A+ FP ++ Q+G A
Sbjct: 56 LETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNA 115
Query: 144 AKLAKERG-W---------AIN----VGGGF-----------HHCSADEGGGFCAYADIS 178
A+ A G W AI+ + G HH D GG+C + +
Sbjct: 116 AETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAA 175
Query: 179 LCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
+ + ++ I+D+D H GNG + F
Sbjct: 176 VAAQR-LLDKGAKKIAILDVDFHHGNGTQDIF 206
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 161 HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLY 219
HH D GGFC + ++ ++ +RV ++D D H G G ++ F + R LY
Sbjct: 177 HHARVDAAGGFCYLNNAAIAA--QALRARHARVAVLDTDMHHGQGIQEIFYA-RRDVLY 232
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD WG +F +S G ++ +DL V + + K++ ++++V
Sbjct: 295 PFDQDDWGAWQKFTASAG----------IQVVGDDLTVTNPKRIAKAVNEKSCNCLLLKV 344
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V ++ A KLA+ GW + V H S + F A
Sbjct: 345 NQIG-----------------SVTESLQACKLAQANGWGVMV----SHRSGETEDTFIAD 383
Query: 175 ADISLC 180
+ LC
Sbjct: 384 LVVGLC 389
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD WG +F +S G ++ +DL V + + K++ ++++V
Sbjct: 294 PFDQDDWGAWQKFTASAG----------IQVVGDDLTVTNPKRIAKAVNEKSCNCLLLKV 343
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V ++ A KLA+ GW + V H S + F A
Sbjct: 344 NQIG-----------------SVTESLQACKLAQANGWGVMV----SHRSGETEDTFIAD 382
Query: 175 ADISLC 180
+ LC
Sbjct: 383 LVVGLC 388
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|B Chain B, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|C Chain C, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|D Chain D, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|E Chain E, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|F Chain F, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|G Chain G, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|H Chain H, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|I Chain I, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|J Chain J, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|K Chain K, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|L Chain L, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9E|A Chain A, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|B Chain B, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|C Chain C, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|D Chain D, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|E Chain E, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|F Chain F, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|G Chain G, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|H Chain H, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|I Chain I, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|J Chain J, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|K Chain K, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|L Chain L, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
Length = 341
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 81/212 (38%), Gaps = 42/212 (19%)
Query: 35 LPLIYSPDYDI-----SFLGIEKLHPFDS---SKWGRICQFLSSEGFLDKNCIVEPLEAS 86
+ +I+S D+ + G E + PF++ ++W I + GF D +V P
Sbjct: 1 MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEW--ILAAVKEAGFDD---VVAPARHG 55
Query: 87 KEDLLVVHSESYLKSLQSSPNVSIIIEVPPVAL---FPNCLVQRKVLYPFRKQVGGTILA 143
E +L VH YL L+++ + A+ FP ++ Q+G A
Sbjct: 56 LETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNA 115
Query: 144 AKLAKERG-W---------AIN----VGGGF-----------HHCSADEGGGFCAYADIS 178
A+ A G W AI+ + G H D GG+C + +
Sbjct: 116 AETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHAAGIDMFGGYCFINNAA 175
Query: 179 LCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
+ + ++ I+D+D H GNG + F
Sbjct: 176 VAAQR-LLDKGAKKIAILDVDFHHGNGTQDIF 206
>pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCC|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCD|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
pdb|3UCD|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
Length = 439
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD W +F ++ G ++ +DL V + + ++++ ++++V
Sbjct: 294 PFDQDDWAAWSKFTANVG----------IQIVGDDLTVTNPKRIERAVEEKACNCLLLKV 343
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V I A KLA+E GW + V H S + F A
Sbjct: 344 NQIG-----------------SVTEAIQACKLAQENGWGVMV----SHRSGETEDTFIAD 382
Query: 175 ADISLC 180
+ LC
Sbjct: 383 LVVGLC 388
>pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|1TE6|B Chain B, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|2AKM|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKM|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
Length = 439
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD W +F ++ G ++ +DL V + + ++++ ++++V
Sbjct: 294 PFDQDDWAAWSKFTANVG----------IQIVGDDLTVTNPKRIERAVEEKACNCLLLKV 343
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V I A KLA+E GW + V H S + F A
Sbjct: 344 NQIG-----------------SVTEAIQACKLAQENGWGVMV----SHRSGETEDTFIAD 382
Query: 175 ADISLC 180
+ LC
Sbjct: 383 LVVGLC 388
>pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJE|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJF|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJF|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJR|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJR|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJS|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
pdb|3UJS|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
Length = 443
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD W +F ++ G ++ +DL V + + ++++ ++++V
Sbjct: 294 PFDQDDWAAWSKFTANVG----------IQIVGDDLTVTNPKRIERAVEEKACNCLLLKV 343
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V I A KLA+E GW + V H S + F A
Sbjct: 344 NQIG-----------------SVTEAIQACKLAQENGWGVMV----SHRSGETEDTFIAD 382
Query: 175 ADISLC 180
+ LC
Sbjct: 383 LVVGLC 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,514,191
Number of Sequences: 62578
Number of extensions: 259241
Number of successful extensions: 545
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 42
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)