BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027427
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2
Length = 387
Score = 339 bits (870), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 159/221 (71%), Positives = 185/221 (83%)
Query: 2 SSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKW 61
S SS S+ T E L+R RIL+SKLYFD+P+ K+ +IYS YDISF+GIEKLHPFDSSKW
Sbjct: 41 SEISSFSMATHPEALRRERILNSKLYFDVPLSKVSIIYSSSYDISFMGIEKLHPFDSSKW 100
Query: 62 GRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFP 121
GR+C+FL S+GFL++ IVEPLEASK DLLVVHSE+YL SL+SS V+ I EV PVA FP
Sbjct: 101 GRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVAPVAFFP 160
Query: 122 NCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
N LVQ+KVLYPFRKQVGGTILAAKLA ERGWAIN+GGGFHHC+A+ GGGFCA+ADISLCI
Sbjct: 161 NFLVQQKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCI 220
Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGY 222
H+AF++L ISRVMIIDLDAHQGNGHE D D+R + Y
Sbjct: 221 HFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMY 261
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2
Length = 347
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN-ISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRSCLYSGY 222
QGNGHE+DF D R + Y
Sbjct: 184 QGNGHERDFMDDKRVYIMDVY 204
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1
Length = 347
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN-ISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRSCLYSGY 222
QGNGHE+DF D R + Y
Sbjct: 184 QGNGHERDFMDDKRVYIMDVY 204
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1
Length = 347
Score = 256 bits (654), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L +VE
Sbjct: 4 ATQLYQHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDGMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN-ISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRSCLYSGY 222
QGNGHE+DF D R + Y
Sbjct: 184 QGNGHERDFMGDKRVYIMDVY 204
>sp|P28606|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A1628 PE=3 SV=2
Length = 300
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 35 LPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVH 94
P++Y PDY I + H F K+ + L +G + + +P + L +VH
Sbjct: 3 FPVVYHPDY---VTPIPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVH 59
Query: 95 SESYLKSL---QSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERG 151
Y+ + +P I +P + +VQR + VGGTIL A+LA E G
Sbjct: 60 EPDYVTAYCQGTLTPKAQRRIGLP----WSAGVVQRTL-----TAVGGTILTAQLALEHG 110
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
A N GG HH G GFC D+++ + R++I+DLD HQG+G F
Sbjct: 111 LACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQ 170
Query: 212 SDSRSCLYS 220
D +S
Sbjct: 171 DDPTVFTFS 179
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 9/173 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
+ N + + R VGG + A L G A+N +GGG HH
Sbjct: 84 DEAMKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKALNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYS 220
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ YS
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYS 194
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYS 220
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ YS
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYS 194
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYS 220
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ YS
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYS 194
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYS 220
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ YS
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYS 194
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYS 220
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ YS
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYS 194
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYS 220
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ YS
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYS 194
>sp|Q56195|ACUC_STAXY Acetoin utilization protein AcuC OS=Staphylococcus xylosus GN=acuC
PE=3 SV=1
Length = 385
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ-SSPNVSIII 112
HPF+ + + L G L ++ I+ P A+ ++L ++H+ Y+++++ +S +
Sbjct: 25 HPFNQMRLKLTTELLMELGQLKQHHIISPRIATDDELSLIHAYDYIQAIRHASHGILSEN 84
Query: 113 EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAIN---VGGGFHHCSADEGG 169
E L +Q ++++ ++ G L G N +GGG HH
Sbjct: 85 EAKKYGLDGEDTLQFRMMHKHSARIVGGALNLADQIMSGTLTNGCHLGGGLHHSLPGRAN 144
Query: 170 GFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYS 220
GFC Y D+++ I Y + N RV+ ID DAH G+G + F ++ ++ +YS
Sbjct: 145 GFCIYNDVAITISYLMQKYN-QRVLCIDTDAHHGDGTQWSFYTNDQALIYS 194
>sp|P39067|ACUC_BACSU Acetoin utilization protein AcuC OS=Bacillus subtilis (strain 168)
GN=acuC PE=3 SV=1
Length = 387
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
IYSP Y E HPF+ + L + D IV P AS+E+L +VH++
Sbjct: 6 FIYSPSYQTYMFHQE--HPFNQQRVLLTYDLLKTINAFDDGDIVTPRLASEEELSLVHTD 63
Query: 97 SYLKS--------LQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK--L 146
Y+++ L + S + +F +L VGGT+ AA +
Sbjct: 64 DYIQAVKLAGAGKLPAEEGESYGLGTEDTPVFAGMHEAASLL------VGGTLTAADWVM 117
Query: 147 AKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNIS-RVMIIDLDAHQGNG 205
+ + A N+GGG HH GFC Y D ++ I Y +Q S RV+ ID DAH G+G
Sbjct: 118 SGQALHAANLGGGLHHGFRGRASGFCIYNDSAVAIQY--IQKKYSARVLYIDTDAHHGDG 175
Query: 206 HEKDFSSDSRSCLYS 220
+ F + C S
Sbjct: 176 VQFTFYDNPDVCTLS 190
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 10/187 (5%)
Query: 37 LIYSPDYDISFLGIEK-LHPFDSSKWGRICQFLSSEGFLDKNCIVEPLE--ASKEDLLVV 93
LIY + D + +E+ HP ++ RI + L G L+K C+ E A+ E++ +V
Sbjct: 428 LIYFNEGDDAHFDLEEDNHPEKPARTRRILKTLRESGVLEK-CVDRNCERIATNEEIRLV 486
Query: 94 HSESYLKSLQSSPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-----KLA 147
H++ L+ L+++ + + F + + R L RK VG + + K A
Sbjct: 487 HTKKMLEHLRTTETMKDEELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDA 546
Query: 148 KERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
+R + V HH SA + GFC + ++++ YA + RV+I+D D H GNG +
Sbjct: 547 GQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQ 606
Query: 208 KDFSSDS 214
+ F DS
Sbjct: 607 EIFYEDS 613
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEP-LEASKEDLLVVHSESYLKSLQSSPNV---- 108
HP S + +I + L+ L+K ++ LE DL V H +S +K L S
Sbjct: 34 HPESSDRILKIKEALTKTKILEKCTVLTNFLEIDDADLEVTHDKSMVKDLMESEKKTQED 93
Query: 109 --SIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAD 166
S + V + N + K + + I+A + + G+A+ G HH +
Sbjct: 94 INSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASN--GFAVVRPPG-HHADSV 150
Query: 167 EGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYS 220
GFC + +++ AF R++I+DLD H G+G ++ F D R +S
Sbjct: 151 SPCGFCLFNNVAQAAEEAFFS-GAERILIVDLDVHHGHGTQRIFYDDKRVLYFS 203
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+I+SP YD L + H +S + I + + S + VEP A +D+L+VHS
Sbjct: 3 IIHSPSYD---LHNHEGHVENSGRTRAILRAIESSDLSPR--FVEPGMAGIDDILMVHSS 57
Query: 97 SYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINV 156
++++ L+ + L + + + R GG +LAA+ A GW+ ++
Sbjct: 58 THVEYLE------VFAGRGGGWLDYDTYMTPESFSVARLSAGGAMLAAEEALRDGWSYSL 111
Query: 157 GGG-FHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR 215
G HH + D GFC + +I++ I +A L +SR +++D D H GNG F D R
Sbjct: 112 GRPPGHHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRD-R 170
Query: 216 SCLY 219
+Y
Sbjct: 171 DVMY 174
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1
Length = 369
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 67 FLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCL 124
+ + G L + +V+P AS E++ H++SYL+ L S + E L +C
Sbjct: 36 LIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGYDCP 95
Query: 125 VQRKVLYPFRKQVGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ + Y + VGG L A +A + AIN GG+HH DE GFC D L I
Sbjct: 96 ITEGI-YDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGI 154
Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR 215
++ RV+ +D+D H G+G E FS S+
Sbjct: 155 --LKLREKFDRVLYVDMDLHHGDGVEDAFSFTSK 186
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIV--EPLEASKEDLLVVHSESYLKSLQSSPNVSII 111
HP + L EG + IV EP +AS ED+L VH+E Y++ L+ I
Sbjct: 20 HPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGI 79
Query: 112 IEVP---PVALFPNCLVQRKVLYPFRKQVGGTILAAK--LAK--ERGWAINVGGGFHHCS 164
I+ PV +F L+ GG I AA+ L K E +A+ G HH
Sbjct: 80 IDFDTNIPVGVFDRALL----------AAGGAIRAAQAVLNKECENAFAMIRPPG-HHAK 128
Query: 165 ADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYS 220
G GFC ++++ + + Q R+ I+D DAH G+G ++ F +D R S
Sbjct: 129 PYIGAGFCYLNNMAIMVKWLLKQ-GFERIAILDWDAHHGDGTQEIFYNDDRVLFIS 183
>sp|Q91695|HDA1A_XENLA Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-a PE=1
SV=1
Length = 480
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +AS ED+
Sbjct: 8 KKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ ++N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDISVNWSGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVVYIDIDIHHGDGVEE 185
Query: 209 DFSSDSR 215
F + R
Sbjct: 186 AFYTTDR 192
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Length = 482
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSR 215
F + R
Sbjct: 186 AFYTTDR 192
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Length = 482
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSR 215
F + R
Sbjct: 186 AFYTTDR 192
>sp|Q6GPA7|HDAC8_XENLA Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1
Length = 325
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
+V+P AS E++ H+++YL+ L S + E L +C + + Y +
Sbjct: 4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGI-YDYAAA 62
Query: 137 VGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
VGG L A + + A+N GG+HH DE GFC D L I ++ RV
Sbjct: 63 VGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVLGI--LKLREKFDRV 120
Query: 194 MIIDLDAHQGNGHEKDFSSDSR 215
+ +D+D H G+G E FS S+
Sbjct: 121 LYVDMDLHHGDGVEDAFSFTSK 142
>sp|Q7SXM0|HDAC8_DANRE Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1
Length = 378
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 12/183 (6%)
Query: 38 IYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSES 97
+YSP+Y + + K+ ++ + + + G L +V+P AS E++ V H++S
Sbjct: 20 VYSPEYIQTCDSLSKV----PNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMAVFHTDS 75
Query: 98 YLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK---LAKERGW 152
YL+ L S + + L +C V + + + VGG L A L +
Sbjct: 76 YLQHLHKISQDGDNDDPQSADFGLGYDCPVVEGI-FDYAAAVGGATLTAAQNLLDGKCDV 134
Query: 153 AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212
AIN GG+HH DE G C D L I ++ RV+ +D+D H G+G E FS
Sbjct: 135 AINWAGGWHHAKKDEASGSCYVNDAVLGI--LKLREKYDRVLYVDVDLHHGDGVEDAFSF 192
Query: 213 DSR 215
S+
Sbjct: 193 TSK 195
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Length = 482
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSR 215
F + R
Sbjct: 186 AFYTTDR 192
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSR 215
F + R
Sbjct: 186 AFYTTDR 192
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2
Length = 488
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 9 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 68
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 69 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 128
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 186
Query: 209 DFSSDSR 215
F + R
Sbjct: 187 AFYTTDR 193
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Length = 482
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 7/182 (3%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ + HP + L + G K I P +A+ E++ HS+ Y
Sbjct: 13 YYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDY 72
Query: 99 LKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKER-GWA 153
+K L+S N+S ++ + +C V + + GG++ +A KL K++ A
Sbjct: 73 IKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIA 132
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+ F +
Sbjct: 133 VNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEEAFYTT 190
Query: 214 SR 215
R
Sbjct: 191 DR 192
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Length = 482
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 7/182 (3%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ + HP + L + G K I P +A+ E++ HS+ Y
Sbjct: 13 YYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDY 72
Query: 99 LKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKER-GWA 153
+K L+S N+S ++ + +C V + + GG++ +A KL K++ A
Sbjct: 73 IKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIA 132
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+ F +
Sbjct: 133 VNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEEAFYTT 190
Query: 214 SR 215
R
Sbjct: 191 DR 192
>sp|P70288|HDAC2_MOUSE Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1
Length = 488
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 9 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 68
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 69 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 128
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 186
Query: 209 DFSSDSR 215
F + R
Sbjct: 187 AFYTTDR 193
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 9/168 (5%)
Query: 55 PFDSSKWGRIC---QFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVS 109
P+ K R+C + + G K + + A ED+L HSE Y+ L+ + N++
Sbjct: 30 PYHPMKPHRLCLTNNLVLNYGLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPENIN 89
Query: 110 IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--AINVGGGFHHCSADE 167
+V + +C V + GG+I A R + AIN GG HH DE
Sbjct: 90 EWKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGLHHARKDE 149
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR 215
GFC DI L I ++ + +RV+ ID+D H G+G ++ F R
Sbjct: 150 ASGFCYVNDIVLAI-LELLKFH-ARVLYIDIDVHHGDGVQEAFYLTDR 195
>sp|P56519|HDAC2_CHICK Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1
Length = 488
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 9 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 68
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 69 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 128
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 186
Query: 209 DFSSDSR 215
F + R
Sbjct: 187 AFYTTDR 193
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1
SV=1
Length = 480
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +AS E++
Sbjct: 8 KKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ ++N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDISVNWSGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVVYIDIDIHHGDGVEE 185
Query: 209 DFSSDSR 215
F + R
Sbjct: 186 AFYTTDR 192
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ +++
Sbjct: 6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKF 65
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPF-RKQVGGTILAA-KLAK 148
HS+ Y++ L+S N+S ++ + +C V LY F + GG++ AA KL K
Sbjct: 66 HSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPV-FDGLYEFCQLSAGGSVAAAVKLNK 124
Query: 149 ERGW-AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
+ IN GGG HH E GFC DI L I ++ + RV+ ID+D H G+G E
Sbjct: 125 QASEICINWGGGLHHAKKSEASGFCYVNDIVLGI-LELLKYH-QRVLYIDIDVHHGDGVE 182
Query: 208 KDFSSDSR 215
+ F + R
Sbjct: 183 EAFYTTDR 190
>sp|B1WC68|HDAC8_RAT Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1
Length = 377
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVM 194
GGTI AA+ + + AIN GG+HH DE GFC D L I ++ R++
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRIL 173
Query: 195 IIDLDAHQGNGHEKDFSSDSR 215
+DLD H G+G E FS S+
Sbjct: 174 YVDLDLHHGDGVEDAFSFTSK 194
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2
Length = 377
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVM 194
GGTI AA+ + + AIN GG+HH DE GFC D L I ++ R++
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRIL 173
Query: 195 IIDLDAHQGNGHEKDFSSDSR 215
+DLD H G+G E FS S+
Sbjct: 174 YVDLDLHHGDGVEDAFSFTSK 194
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSR 215
G E FS S+
Sbjct: 184 GVEDAFSFTSK 194
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Length = 501
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 11/188 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K+ Y P+ + G + HP + L+ G L +++P A DL
Sbjct: 18 KVCYFYDPEVGNYYYG--QGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRF 75
Query: 94 HSESY---LKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER 150
H++ Y L+S+ I ++ + +C V LY F + G + +
Sbjct: 76 HADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPV-FDGLYSFCQTYAGGSVGGSVKLNH 134
Query: 151 GW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
G AIN GG HH E GFC DI L I Q RV+ +D+D H G+G E
Sbjct: 135 GLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVE 192
Query: 208 KDFSSDSR 215
+ F + R
Sbjct: 193 EAFYATDR 200
>sp|Q0VCB2|HDAC8_BOVIN Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1
Length = 377
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C + + +
Sbjct: 56 IVKPKVASMEEMASFHTDAYLQHLQKVSEDGDDDHPDSIEYGLGYDCPATEGI-FDYAAA 114
Query: 137 VGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
VGG + A G AIN GG+HH DE GFC D L I ++ R+
Sbjct: 115 VGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRI 172
Query: 194 MIIDLDAHQGNGHEKDFSSDSR 215
+ +DLD H G+G E FS S+
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSK 194
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1
Length = 513
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 18/187 (9%)
Query: 38 IYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSES 97
Y PD + G + HP + L+ G L++ + P A + +L H+E
Sbjct: 28 FYDPDVGNYYYG--QGHPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRFHAEE 85
Query: 98 YLKSLQSSPNVSIIIEVPPVALFPNCLVQRKV-----LYPFRKQVGGTIL--AAKLAKER 150
Y+ L+S V+ + + L V + LY F + G + A K
Sbjct: 86 YINFLRS---VTPETQQDQIRLLKRFNVGEECPVLDGLYSFCQTYAGASVGGAVKFNHGH 142
Query: 151 GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL--NISRVMIIDLDAHQGNGHEK 208
AIN GG HH E GFC DI L I ++L + RV+ +D+D H G+G E+
Sbjct: 143 DIAINWSGGLHHAKKCEASGFCYVNDIVLAI----LELLKHHERVLYVDIDIHHGDGVEE 198
Query: 209 DFSSDSR 215
F + R
Sbjct: 199 AFYTTDR 205
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2
Length = 428
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 7/184 (3%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW- 152
Y+ LQ SPN + + +C V + + G ++ A L +
Sbjct: 65 DYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCD 124
Query: 153 -AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFY 182
Query: 212 SDSR 215
R
Sbjct: 183 LTDR 186
>sp|O17695|HDA1_CAEEL Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1
Length = 461
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQSS-PN--VSIIIEVPPVALFPNCLVQRKVLYPF-R 134
I P AS ED+ HS+ Y+ L+S+ P+ S ++ + +C + LY F +
Sbjct: 57 IFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPL-FDGLYEFCQ 115
Query: 135 KQVGGTILAA-KLAKER-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISR 192
GG++ AA KL K++ AIN GG HH E GFC DI L I ++ + R
Sbjct: 116 LSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGI-LELLKYH-KR 173
Query: 193 VMIIDLDAHQGNGHEKDFSSDSR 215
V+ +D+D H G+G E+ F + R
Sbjct: 174 VLYVDIDVHHGDGVEEAFYTTDR 196
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 13/190 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ HP + + + + +K ++ P+ A++ D+
Sbjct: 5 KKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRC 64
Query: 94 HSESYLKSL-QSSPNVSIIIEVPPVALFPNCLVQRKV---LYPF-RKQVGGTILAAKL-- 146
H++ Y++ L + +P+ + + P L N V LY F GG+I AA+
Sbjct: 65 HTDEYIEFLWRVTPDT--MEKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELN 122
Query: 147 AKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI-SRVMIIDLDAHQGNG 205
+ AIN GG HH E GFC DI+L A L RV+ ID+D H G+G
Sbjct: 123 SGNAEIAINWAGGLHHAKKREASGFCYVNDIALA---ALELLKYHQRVLYIDIDVHHGDG 179
Query: 206 HEKDFSSDSR 215
E+ F + R
Sbjct: 180 VEEFFYTTDR 189
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA
PE=2 SV=1
Length = 495
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HP + + + G K I P +AS+ +L HS+ Y+ L+ ++
Sbjct: 23 HPMKPHRMRMTHDLVLNYGIYKKMQIFRPRKASELELTNFHSDDYINFLK-------LVT 75
Query: 114 VPPVALFPNCLVQRKV---------LYPF-RKQVGGTI-LAAKL-AKERGWAINVGGGFH 161
+ + LV+ V +Y F + GG+I A K+ +KE AIN GG H
Sbjct: 76 PDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGSIGCAVKVNSKESDVAINWAGGLH 135
Query: 162 HCSADEGGGFCAYADISLCIHYAFVQL--NISRVMIIDLDAHQGNGHEKDFSSDSR 215
H E GFC DI L I ++L + RV+ ID+D H G+G E+ F + R
Sbjct: 136 HAKKSEASGFCYTNDIVLSI----LELLKHHERVLYIDIDIHHGDGVEEAFYTTDR 187
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2
Length = 1011
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 49 GIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSP-- 106
G HP + + I L G L+K ++ +AS E++ +VHSE + ++P
Sbjct: 649 GNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLD 708
Query: 107 ----NVSIIIEVPPVALFPNCL-----VQRKVLY-------PFRKQVGGTI-LAAKLAK- 148
+ I++ F + V ++ R VG I LA+K+A
Sbjct: 709 GQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASG 768
Query: 149 --ERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGH 206
+ G+A+ G HH GFC + +++ Y QLNIS+++I+DLD H GNG
Sbjct: 769 ELKNGFAVVRPPG-HHAEESTAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVHHGNGT 827
Query: 207 EKDFSSDSRSCLY 219
++ F +D S LY
Sbjct: 828 QQAFYADP-SILY 839
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1
PE=2 SV=1
Length = 576
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 9/168 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS--SPNVS-I 110
HP + + + G K I P +A E++ HS+ Y+K L++ N+S
Sbjct: 27 HPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAVMEEMTKYHSDDYVKFLRTIRPDNMSEY 86
Query: 111 IIEVPPVALFPNCLVQRKVLYPF-RKQVGGTILAA-KLAKER-GWAINVGGGFHHCSADE 167
++ + +C V LY F + GG++ A KL K++ AIN GG HH E
Sbjct: 87 TKQMQRFNVGEDCPV-FDGLYEFCQLSSGGSVAGAVKLNKQQTDIAINWAGGLHHAKKSE 145
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR 215
GFC DI L I ++ + RV+ ID+D H G+G E+ F + R
Sbjct: 146 ASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEEAFYTTDR 191
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 29/189 (15%)
Query: 43 YDISF-LGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKS 101
+D SF G E+LH I + L EG LD+ + A KE+L++VHS Y+
Sbjct: 101 WDDSFPEGPERLHA--------IKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDL 152
Query: 102 LQSSPNVS------IIIEVPPVALFPN-----CLVQRKVLYPFRKQVGGTILAAKLAKER 150
++++ ++ + V L PN CL VL ++ +L A++
Sbjct: 153 METTQYMNEGELRVLADTYDSVYLHPNSYSCACLASGSVL-----RLVDAVLGAEI--RN 205
Query: 151 GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
G AI G HH G+C + +++ YA + I RV+I+D D H G G + F
Sbjct: 206 GMAIIRPPG-HHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIVDWDVHHGQGTQFTF 264
Query: 211 SSDSRSCLY 219
D S LY
Sbjct: 265 DQDP-SVLY 272
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 14/202 (6%)
Query: 30 IPIFKLPLIYSPD---YDISFLGIEKL----HPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+PI P++ S YD + + L HP + RI L G + + P
Sbjct: 469 LPILTWPVLQSRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTP 528
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGT-- 140
A++ +LL HS Y+ L+++ + + F + + + G
Sbjct: 529 RPATEAELLTCHSAEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACR 588
Query: 141 ILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYA-FVQLNISRVMIID 197
++ A L+ E G A+ G HH D GFC + +++ +A + + R++I+D
Sbjct: 589 LVEAVLSGEVLNGAAVVRPPG-HHAEQDAACGFCFFNSVAVAARHAQTISGHALRILIVD 647
Query: 198 LDAHQGNGHEKDFSSDSRSCLY 219
D H GNG + F D S LY
Sbjct: 648 WDVHHGNGTQHMFEDDP-SVLY 668
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1
Length = 428
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPN--VSI 110
HP + + G K + +P +AS+ D+ HSE Y+ LQ SPN
Sbjct: 22 HPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGF 81
Query: 111 IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEG 168
+ + +C V + + G ++ A + AIN GG HH E
Sbjct: 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEA 141
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR 215
GFC DI + I ++ + RV+ ID+D H G+G ++ F R
Sbjct: 142 SGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDR 186
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1
Length = 428
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPN--VSI 110
HP + + G K + +P +AS+ D+ HSE Y+ LQ SPN
Sbjct: 22 HPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGF 81
Query: 111 IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEG 168
+ + +C V + + G ++ A + AIN GG HH E
Sbjct: 82 TKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEA 141
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR 215
GFC DI + I ++ + RV+ ID+D H G+G ++ F R
Sbjct: 142 SGFCYVNDIVISI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDR 186
>sp|Q9FML2|HDA6_ARATH Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1
Length = 471
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQS-SP----NVSIIIEVPPVALFPNCLVQRKVLYPF 133
I P A D+ HS Y+ L S SP + S + + +C V +
Sbjct: 63 ISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFC 122
Query: 134 RKQVGGTILAA-KLAKERG-WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNIS 191
R GG+I AA KL ++ AIN GGG HH E GFC DI L I +++
Sbjct: 123 RASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGI-LELLKM-FK 180
Query: 192 RVMIIDLDAHQGNGHEKDFSSDSR 215
RV+ ID+D H G+G E+ F + R
Sbjct: 181 RVLYIDIDVHHGDGVEEAFYTTDR 204
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1
Length = 428
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDY 66
Query: 99 LKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWA 153
+ LQ SPN + + +C V + + G ++ A + A
Sbjct: 67 IDFLQKVSPNNMQGFTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIA 126
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
IN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 127 INWAGGLHHAKKFEASGFCYVNDIVISI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLT 184
Query: 214 SR 215
R
Sbjct: 185 DR 186
>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1
Length = 428
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 75/184 (40%), Gaps = 7/184 (3%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--G 151
Y+ LQ SPN + + +C V + + G ++ A +
Sbjct: 65 DYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
AIN GG HH E GFC DI + I ++ + RV+ +D+D H G+G ++ F
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYVDIDIHHGDGVQEAFY 182
Query: 212 SDSR 215
R
Sbjct: 183 LTDR 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,036,886
Number of Sequences: 539616
Number of extensions: 3383179
Number of successful extensions: 6873
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6664
Number of HSP's gapped (non-prelim): 130
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)