Query 027427
Match_columns 223
No_of_seqs 170 out of 1296
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0123 AcuC Deacetylases, inc 100.0 5.5E-55 1.2E-59 392.5 18.1 182 33-223 2-186 (340)
2 PTZ00063 histone deacetylase; 100.0 1.6E-54 3.4E-59 398.3 19.8 188 32-223 3-197 (436)
3 PTZ00346 histone deacetylase; 100.0 5.8E-54 1.3E-58 392.7 19.6 187 33-223 20-214 (429)
4 PF00850 Hist_deacetyl: Histon 100.0 2.8E-53 6E-58 378.4 11.0 174 40-223 1-185 (311)
5 KOG1342 Histone deacetylase co 100.0 2.5E-44 5.4E-49 319.7 14.9 189 30-222 4-197 (425)
6 KOG1344 Predicted histone deac 100.0 9.4E-39 2E-43 269.3 7.7 200 22-222 3-202 (324)
7 KOG1343 Histone deacetylase co 100.0 9.2E-31 2E-35 254.6 6.8 162 52-223 463-632 (797)
8 KOG1343 Histone deacetylase co 99.9 2.9E-25 6.3E-30 216.3 3.7 190 33-223 29-227 (797)
9 KOG0121 Nuclear cap-binding pr 79.5 1.8 3.9E-05 34.4 2.7 44 165-208 74-122 (153)
10 PRK13236 nitrogenase reductase 76.2 3.2 7E-05 36.7 3.7 32 178-211 23-54 (296)
11 TIGR01969 minD_arch cell divis 75.0 3.9 8.5E-05 34.3 3.8 19 185-204 25-43 (251)
12 PHA02518 ParA-like protein; Pr 66.6 9.5 0.00021 31.0 4.3 22 185-208 25-46 (211)
13 TIGR01287 nifH nitrogenase iro 65.9 8.4 0.00018 33.3 4.0 18 185-203 24-41 (275)
14 PRK10818 cell division inhibit 65.1 8.9 0.00019 32.9 4.0 18 187-205 29-46 (270)
15 CHL00175 minD septum-site dete 63.0 11 0.00023 32.8 4.0 21 186-207 41-61 (281)
16 PRK13232 nifH nitrogenase redu 62.1 8.9 0.00019 33.2 3.4 18 186-204 26-43 (273)
17 cd02036 MinD Bacterial cell di 60.3 13 0.00028 29.2 3.9 21 187-208 26-46 (179)
18 cd02040 NifH NifH gene encodes 60.0 15 0.00032 31.3 4.4 19 187-207 27-45 (270)
19 PRK13230 nitrogenase reductase 58.1 12 0.00027 32.4 3.6 21 185-207 25-45 (279)
20 TIGR03371 cellulose_yhjQ cellu 53.4 23 0.0005 29.6 4.5 17 186-204 27-43 (246)
21 PF00977 His_biosynth: Histidi 52.5 20 0.00042 30.6 3.9 50 149-205 9-59 (229)
22 cd02117 NifH_like This family 52.0 20 0.00044 29.7 3.8 19 187-207 26-44 (212)
23 TIGR01281 DPOR_bchL light-inde 51.7 18 0.00039 31.0 3.5 18 187-206 26-43 (268)
24 TIGR01968 minD_bact septum sit 51.6 20 0.00044 30.1 3.8 14 191-204 31-44 (261)
25 PRK13234 nifH nitrogenase redu 51.4 19 0.00042 31.7 3.8 23 186-210 29-51 (295)
26 PRK13185 chlL protochlorophyll 51.2 20 0.00044 30.7 3.8 19 187-207 28-46 (270)
27 PF02701 zf-Dof: Dof domain, z 50.6 5.4 0.00012 27.4 0.1 9 169-177 16-24 (63)
28 cd03111 CpaE_like This protein 49.9 42 0.0009 24.7 4.9 14 191-204 30-43 (106)
29 PF02310 B12-binding: B12 bind 49.7 47 0.001 24.5 5.2 44 177-222 17-60 (121)
30 TIGR02016 BchX chlorophyllide 49.0 22 0.00047 31.6 3.7 16 187-203 26-41 (296)
31 PRK13235 nifH nitrogenase redu 48.1 20 0.00043 31.0 3.3 20 183-203 23-42 (274)
32 PRK10037 cell division protein 47.9 20 0.00044 30.5 3.3 20 185-206 26-45 (250)
33 cd02032 Bchl_like This family 44.3 28 0.00061 29.8 3.6 16 187-204 26-41 (267)
34 PRK13233 nifH nitrogenase redu 41.5 34 0.00073 29.4 3.7 16 188-204 30-45 (275)
35 cd02037 MRP-like MRP (Multiple 40.6 33 0.00071 27.2 3.3 15 187-202 26-40 (169)
36 TIGR03453 partition_RepA plasm 39.3 39 0.00085 30.9 3.9 19 187-207 131-149 (387)
37 TIGR01007 eps_fam capsular exo 38.9 40 0.00087 27.5 3.6 16 187-203 44-59 (204)
38 PF13050 DUF3911: Protein of u 38.9 11 0.00024 26.2 0.2 10 168-177 25-34 (77)
39 CHL00072 chlL photochlorophyll 37.6 37 0.00079 30.0 3.3 17 184-201 23-39 (290)
40 TIGR03029 EpsG chain length de 37.3 44 0.00096 28.7 3.8 17 187-204 130-146 (274)
41 PRK13869 plasmid-partitioning 35.6 47 0.001 30.9 3.8 22 185-208 146-167 (405)
42 TIGR00734 hisAF_rel hisA/hisF 35.6 93 0.002 26.3 5.4 36 171-207 32-67 (221)
43 cd02033 BchX Chlorophyllide re 35.4 41 0.00088 30.5 3.3 19 191-210 60-78 (329)
44 KOG3457 Sec61 protein transloc 34.8 41 0.00089 24.6 2.6 22 1-22 2-23 (88)
45 PRK13587 1-(5-phosphoribosyl)- 34.5 76 0.0017 27.1 4.7 46 150-202 12-58 (234)
46 PRK13231 nitrogenase reductase 34.4 32 0.00069 29.4 2.4 14 186-201 27-40 (264)
47 TIGR03815 CpaE_hom_Actino heli 33.6 51 0.0011 29.2 3.7 14 191-204 123-136 (322)
48 PRK10175 lipoprotein; Provisio 32.4 45 0.00098 23.8 2.4 10 189-198 45-54 (75)
49 PF01656 CbiA: CobQ/CobB/MinD/ 31.5 58 0.0012 25.8 3.4 15 191-205 28-42 (195)
50 PRK13849 putative crown gall t 31.4 54 0.0012 27.9 3.3 20 187-208 28-47 (231)
51 PRK11670 antiporter inner memb 31.3 59 0.0013 29.9 3.7 22 187-210 134-155 (369)
52 cd04723 HisA_HisF Phosphoribos 31.3 63 0.0014 27.5 3.7 37 168-205 28-64 (233)
53 PF06564 YhjQ: YhjQ protein; 30.8 56 0.0012 28.5 3.3 23 177-200 18-40 (243)
54 KOG2791 N-acetylglucosaminyltr 30.6 28 0.00062 32.1 1.5 26 193-218 372-406 (455)
55 cd00525 AE_Prim_S_like AE_Prim 30.5 41 0.00089 25.6 2.2 14 191-204 54-67 (136)
56 TIGR03018 pepcterm_TyrKin exop 29.9 70 0.0015 26.3 3.7 14 191-204 66-79 (207)
57 PRK14114 1-(5-phosphoribosyl)- 28.0 1.2E+02 0.0026 26.2 4.9 41 166-207 21-62 (241)
58 PF00220 Hormone_4: Neurohypop 27.7 17 0.00037 15.5 -0.2 6 172-177 1-6 (9)
59 cd02514 GT13_GLCNAC-TI GT13_GL 25.6 1.4E+02 0.0031 27.1 5.2 43 180-222 88-137 (334)
60 COG0683 LivK ABC-type branched 24.9 1.1E+02 0.0023 27.6 4.2 36 177-212 135-170 (366)
61 COG0489 Mrp ATPases involved i 24.9 93 0.002 27.1 3.7 13 191-203 87-99 (265)
62 PRK13586 1-(5-phosphoribosyl)- 23.8 1.6E+02 0.0034 25.2 4.8 36 170-207 26-61 (232)
63 PRK11519 tyrosine kinase; Prov 22.6 1.3E+02 0.0029 30.0 4.7 14 191-204 556-569 (719)
64 TIGR01005 eps_transp_fam exopo 22.5 1.1E+02 0.0023 30.7 4.0 17 191-207 576-592 (754)
65 PRK09822 lipopolysaccharide co 22.0 1.3E+02 0.0027 26.4 3.8 47 166-215 161-207 (269)
66 cd00550 ArsA_ATPase Oxyanion-t 21.9 96 0.0021 26.6 3.2 16 187-203 26-41 (254)
67 COG3570 StrB Streptomycin 6-ki 21.5 55 0.0012 28.5 1.5 30 173-204 143-172 (274)
68 PRK09492 treR trehalose repres 20.2 1.1E+02 0.0025 26.1 3.3 34 168-201 233-267 (315)
69 PF09140 MipZ: ATPase MipZ; I 20.0 1.1E+02 0.0024 26.9 3.1 23 176-203 20-42 (261)
No 1
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.5e-55 Score=392.49 Aligned_cols=182 Identities=30% Similarity=0.426 Sum_probs=165.6
Q ss_pred CceeEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCccccc
Q 027427 33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIII 112 (223)
Q Consensus 33 ~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~~ 112 (223)
+++.++|++.+..|.++ .+|||+|.|++.+.++|++.|+...+++++|+++++++|++||+++||++|++.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~--~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~-- 77 (340)
T COG0123 2 MKTALIYHPEFLEHEPP--PGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG-- 77 (340)
T ss_pred CcceEeeCHHHhcCCCC--CCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc--
Confidence 57889999999888654 78999999999999999999988888999999999999999999999999999886521
Q ss_pred cCCCcccCCCcccccccHHHHHHHhhHHHHHHHHHhhc---CcEeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhcC
Q 027427 113 EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER---GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN 189 (223)
Q Consensus 113 e~~~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~~---~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~~ 189 (223)
...++.||++++++++++++++|+++.|++.++++ .++..+||| |||++++++|||+|||+||||++|+++ +
T Consensus 78 ---~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppg-HHA~~~~a~GFC~fNn~Aiaa~~l~~~-~ 152 (340)
T COG0123 78 ---YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPG-HHAGRDRASGFCLFNNVAIAAKYLLKK-G 152 (340)
T ss_pred ---cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCc-ccccCCCCceeeeecHHHHHHHHHHHc-C
Confidence 23567899999999999999999999999999974 345555555 999999999999999999999999988 8
Q ss_pred CCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 190 ISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 190 ~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
.+||+|||||||||||||+|||+|++|+|+|+||
T Consensus 153 ~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~ 186 (340)
T COG0123 153 VKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQ 186 (340)
T ss_pred CCcEEEEEecCCCChhhHHHHccCCCeEEEeccC
Confidence 9999999999999999999999999999999997
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=1.6e-54 Score=398.29 Aligned_cols=188 Identities=24% Similarity=0.355 Sum_probs=167.9
Q ss_pred CCceeEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCcccc
Q 027427 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (223)
Q Consensus 32 ~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~ 111 (223)
+.++.++|+|+|..|.++ .+|||+|.|++.+.++|+++|+...+++++|++|+.++|.+||+++||++|++.++....
T Consensus 3 ~~~v~~~yd~~~~~h~~g--~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~ 80 (436)
T PTZ00063 3 RKRVSYFYDPDIGSYYYG--PGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYR 80 (436)
T ss_pred CceEEEEECccccCcCCc--CcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcc
Confidence 567999999999999765 689999999999999999999999999999999999999999999999999987653211
Q ss_pred ---ccCCCcccC--CCcccccccHHHHHHHhhHHHHHHHHHhhc--CcEeecCCCCCCCCCCCCCcccccchHHHHHHHH
Q 027427 112 ---IEVPPVALF--PNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (223)
Q Consensus 112 ---~e~~~~~~~--~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~~--~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l 184 (223)
.......++ +||++++++++++++++||+|.|++.++++ ++|+||+||+|||++++++|||+|||+||||++|
T Consensus 81 ~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L 160 (436)
T PTZ00063 81 DFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILEL 160 (436)
T ss_pred cchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHH
Confidence 011112233 599999999999999999999999998853 5899999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 185 FVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
++.+ +||+|||||||||||||++||+||+|+|||+|+
T Consensus 161 ~~~~--~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~ 197 (436)
T PTZ00063 161 LKYH--ARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHK 197 (436)
T ss_pred HHhC--CeEEEEeCCCCCCcchHHHhccCCCeEEEEecc
Confidence 9864 799999999999999999999999999999996
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=5.8e-54 Score=392.70 Aligned_cols=187 Identities=26% Similarity=0.349 Sum_probs=162.0
Q ss_pred CceeEE----eCcccccccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCc
Q 027427 33 FKLPLI----YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (223)
Q Consensus 33 ~~~~iv----y~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~ 108 (223)
.++.+| |.+++..+.+ +++|||+|+|++.++++|++.|+...+++++|++|+.++|++||+++||++|++....
T Consensus 20 ~~~~~~~~~~y~~~~~~~~~--~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~ 97 (429)
T PTZ00346 20 GRVALIDTSGYASDMNISAF--VPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCR 97 (429)
T ss_pred ceeEEEecCccccccccccC--CCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhccc
Confidence 446788 5556665544 4789999999999999999999998899999999999999999999999999874321
Q ss_pred cc--cccCCCcccCCCcccccccHHHHHHHhhHHHHHHHHHhhc--CcEeecCCCCCCCCCCCCCcccccchHHHHHHHH
Q 027427 109 SI--IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (223)
Q Consensus 109 ~~--~~e~~~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~~--~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l 184 (223)
.. ..+.....+++||++++++++++++++||++.|++.++++ ++|++++||+|||++++++|||+|||+||||++|
T Consensus 98 ~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~l 177 (429)
T PTZ00346 98 SWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILEL 177 (429)
T ss_pred ccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHHH
Confidence 10 0011223456899999999999999999999999999854 5799999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 185 FVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
+++ .+||+|||||||||||||+|||+||+|||||+||
T Consensus 178 l~~--~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq 214 (429)
T PTZ00346 178 LKC--HDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHK 214 (429)
T ss_pred HHc--CCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecC
Confidence 986 4799999999999999999999999999999996
No 4
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=2.8e-53 Score=378.44 Aligned_cols=174 Identities=28% Similarity=0.414 Sum_probs=135.0
Q ss_pred CcccccccCCCCCCCCCCchHHHHHHHHHHHC-CCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCcccccc-CCCc
Q 027427 40 SPDYDISFLGIEKLHPFDSSKWGRICQFLSSE-GFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE-VPPV 117 (223)
Q Consensus 40 ~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~-gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~~e-~~~~ 117 (223)
||.|. +. ++++|||+|+|++.+.+.|++. ++++. ++++.++|++|||++||++|++.+......+ ....
T Consensus 1 ~~~~~-~~--~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~ 71 (311)
T PF00850_consen 1 HPQYQ-HQ--LGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSP 71 (311)
T ss_dssp ----T-T---CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHH
T ss_pred CCccc-CC--CCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccc
Confidence 56776 32 4578999999999999999986 77644 9999999999999999999998764332111 0000
Q ss_pred ---c-c-CCCcccccccHHHHHHHhhHHHHHHHHHhh----cCcEeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhc
Q 027427 118 ---A-L-FPNCLVQRKVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL 188 (223)
Q Consensus 118 ---~-~-~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~----~~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~ 188 (223)
. . +.||++++++++++++++|+++.|++.+++ ++||+++||| |||.+++++|||+|||+||||+||++++
T Consensus 72 ~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~ 150 (311)
T PF00850_consen 72 EFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKY 150 (311)
T ss_dssp HHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTT
T ss_pred ccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhcc
Confidence 0 1 579999999999999999999999999994 4799997777 9999999999999999999999999988
Q ss_pred CCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 189 NISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 189 ~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
+++||+|||||||||||||+|||+||+|+|+|||+
T Consensus 151 ~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~ 185 (311)
T PF00850_consen 151 GLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQ 185 (311)
T ss_dssp TTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE
T ss_pred ccceEEEEEeCCCCcccchhheeCCCCEEecCccc
Confidence 99999999999999999999999999999999996
No 5
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-44 Score=319.74 Aligned_cols=189 Identities=27% Similarity=0.370 Sum_probs=168.7
Q ss_pred CCCCceeEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCcc
Q 027427 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVS 109 (223)
Q Consensus 30 ~~~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~ 109 (223)
..+.++.+.|+++-... .++.+||++|.|++.+.+++..+||...+++.+|..|+.+|+.++||+|||++|++..+..
T Consensus 4 ~~k~~V~y~yd~~vg~~--~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n 81 (425)
T KOG1342|consen 4 LIKRRVSYFYDPDVGNF--HYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPEN 81 (425)
T ss_pred cCCceEEEEecCccccc--cccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccc
Confidence 45667888888887554 3568999999999999999999999999999999999999999999999999999988754
Q ss_pred cc---ccCCCcccCCCcccccccHHHHHHHhhHHHHHHHHHhh--cCcEeecCCCCCCCCCCCCCcccccchHHHHHHHH
Q 027427 110 II---IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (223)
Q Consensus 110 ~~---~e~~~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~--~~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l 184 (223)
.. .+...+.+..||+++.++++.+++.+||+|.||+.+-. ..+|+||.||.|||+++.|+|||++||++++|..|
T Consensus 82 ~~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeL 161 (425)
T KOG1342|consen 82 METFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILEL 161 (425)
T ss_pred ccccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHH
Confidence 31 12223456789999999999999999999999987653 35899999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEecc
Q 027427 185 FVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGY 222 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH 222 (223)
++.+ +||++||+|+|||||+|++||..+||||+|+|
T Consensus 162 lK~h--~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfH 197 (425)
T KOG1342|consen 162 LKYH--KRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFH 197 (425)
T ss_pred HHhC--CceEEEEecccCCccHHHHHhccceeEEEEEE
Confidence 9874 69999999999999999999999999999999
No 6
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=9.4e-39 Score=269.27 Aligned_cols=200 Identities=59% Similarity=1.043 Sum_probs=187.7
Q ss_pred hcccccccCCCCceeEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHH
Q 027427 22 LSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKS 101 (223)
Q Consensus 22 ~~~~~~~~~~~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~ 101 (223)
+-++.|+..|..+++|||++.|...+.++.+.|||+..++..|.+.|.+.++++.-.+++|.++++++|++|||.+|++.
T Consensus 3 ~~~kly~~vp~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLks 82 (324)
T KOG1344|consen 3 VWVKLYDAVPAGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKS 82 (324)
T ss_pred eeeeecccCccccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHH
Confidence 45678899999999999999999999899899999999999999999999999888899999999999999999999999
Q ss_pred HhcCCCccccccCCCcccCCCcccccccHHHHHHHhhHHHHHHHHHhhcCcEeecCCCCCCCCCCCCCcccccchHHHHH
Q 027427 102 LQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181 (223)
Q Consensus 102 l~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~~~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa 181 (223)
++.....+.+.|.+...+.|++++.+..+...++.+||++.|++++++.|+|+|.+|||||+..++++|||.|-|+.+|+
T Consensus 83 lr~s~~vA~I~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle~GWAINvGGGFHHcss~rGGGFC~yADItl~I 162 (324)
T KOG1344|consen 83 LRWSIKVAQITEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALERGWAINVGGGFHHCSSSRGGGFCAYADITLAI 162 (324)
T ss_pred hhccceeeEEEeccccccCchhhhhhhhccceeeccCceeehhhhhhhcCeEEeecCccceeccCCCCceeehhhHHHHH
Confidence 99877777788999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEecc
Q 027427 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGY 222 (223)
Q Consensus 182 ~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH 222 (223)
..+.++..+.|++|||+|+|+|||.+.-|.+| .|..+.++
T Consensus 163 ~~lFer~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~y 202 (324)
T KOG1344|consen 163 FFLFERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMY 202 (324)
T ss_pred HHHHhhhhhhheEEEecccccCCccccccccc-eeehhhhh
Confidence 99999888999999999999999999999988 77665543
No 7
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=99.96 E-value=9.2e-31 Score=254.59 Aligned_cols=162 Identities=25% Similarity=0.298 Sum_probs=124.3
Q ss_pred CCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCccc-------cccCCCcccCCCcc
Q 027427 52 KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSI-------IIEVPPVALFPNCL 124 (223)
Q Consensus 52 ~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~-------~~e~~~~~~~~d~~ 124 (223)
..||+.|.| ....+. .|++.+|+.+ |+.++|+.||+.+|+..+........ ..++..++.++|+.
T Consensus 463 ~~~~~~p~r---~~t~~~-~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dt~ 534 (797)
T KOG1343|consen 463 SRSPESPAR---FTTGLH-TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIGVDSDTW 534 (797)
T ss_pred cCCcccchh---hhcccc-cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhccccceeecccHH
Confidence 368999999 222232 7888889877 99999999999999999652211110 01223344455655
Q ss_pred ccccc-HHHHHHHhhHHHHHHHHHhhcCcEeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhcCCCeEEEEecCCcCC
Q 027427 125 VQRKV-LYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQG 203 (223)
Q Consensus 125 ~~~~~-~~~a~~a~Gg~l~aa~~~~~~~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHG 203 (223)
++... ..++++++++.+..+..+. .|||++|||| |||....++|||+|||+|||+++++..+.++||+|+|||||||
T Consensus 535 ~~~~~ssga~~~av~~v~~~~~~~~-~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvhhg 612 (797)
T KOG1343|consen 535 WNELHSSGAARLAVGCVIELAFKVA-SGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVHHG 612 (797)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhh-cceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeecccCC
Confidence 54432 2244555555555554443 3899999999 9999999999999999999999999988889999999999999
Q ss_pred chhhHhhhcCCCEEEEeccC
Q 027427 204 NGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 204 nGTq~if~~d~~Vl~iSlH~ 223 (223)
||||.+||.|++|+|+|+|.
T Consensus 613 ngtq~~f~~~~~vlyislhr 632 (797)
T KOG1343|consen 613 NGTQQAFYSDPSVLYISLHR 632 (797)
T ss_pred cceeeeeccCccccccccch
Confidence 99999999999999999984
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=99.91 E-value=2.9e-25 Score=216.34 Aligned_cols=190 Identities=17% Similarity=0.183 Sum_probs=156.9
Q ss_pred CceeEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHCCCCCCceEecC-CCCCHHHHhccCCHHHHHHHhcCCCccc
Q 027427 33 FKLPLIYSPDYDISFLGIEKLHP-FDSSKWGRICQFLSSEGFLDKNCIVEP-LEASKEDLLVVHSESYLKSLQSSPNVSI 110 (223)
Q Consensus 33 ~~~~ivy~~~~~~h~~~~~~~Hp-e~p~R~~~i~~~L~~~gl~~~~~~~~p-~~a~~e~l~~vHs~~Yv~~l~~~~~~~~ 110 (223)
.++.++|++.+..|....+..|+ +.++|++.+.+.+.+.++.+++.+..+ +.+++++++.+|+++|++.+........
T Consensus 29 ~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~ 108 (797)
T KOG1343|consen 29 IQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTA 108 (797)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhcc
Confidence 56889999999999633334455 999999999999999999888876666 9999999999999999999987652211
Q ss_pred cccC-CCcccCCCcccccccHHHHHHHhhHHHHHHHHHh----hcCcEeecCCCCCCCCCCCCCcccccchHHHHHHHHH
Q 027427 111 IIEV-PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAK----ERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAF 185 (223)
Q Consensus 111 ~~e~-~~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~----~~~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~ 185 (223)
.... ....-.+..++++.++..+..+.|+.+...+.++ .++++.++++| |||.++...|||+|||||++++...
T Consensus 109 e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~~~~ 187 (797)
T KOG1343|consen 109 EEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRSSPL 187 (797)
T ss_pred hhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhhccc
Confidence 0000 0011245777888889999999999998666654 46789999988 9999999999999999999999988
Q ss_pred HhcCCCeEEEEecCCcCCchhhHhhhc--CCCEEEEeccC
Q 027427 186 VQLNISRVMIIDLDAHQGNGHEKDFSS--DSRSCLYSGYV 223 (223)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGnGTq~if~~--d~~Vl~iSlH~ 223 (223)
.++..+||+|+|||+|||+|||..|++ |++|+++|+|+
T Consensus 188 ~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r 227 (797)
T KOG1343|consen 188 LRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHR 227 (797)
T ss_pred cccccceeEeecccccCCCCCCCccCCCcccccccccchh
Confidence 887789999999999999999999999 99999999985
No 9
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=79.54 E-value=1.8 Score=34.38 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=32.8
Q ss_pred CCCCCccccc-----chHHHHHHHHHHhcCCCeEEEEecCCcCCchhhH
Q 027427 165 ADEGGGFCAY-----ADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 165 ~~~~~GFC~f-----NnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~ 208 (223)
.-.++|||++ .++-.|.+|+-...--+|++-+|||.=-=+|-|.
T Consensus 74 kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQy 122 (153)
T KOG0121|consen 74 KKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQY 122 (153)
T ss_pred CcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhh
Confidence 4578999987 4677777887544335899999999877777663
No 10
>PRK13236 nitrogenase reductase; Reviewed
Probab=76.19 E-value=3.2 Score=36.72 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhh
Q 027427 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211 (223)
Q Consensus 178 AIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~ 211 (223)
++-.-+++.+.| +||++||+|.+.+| |.-+|.
T Consensus 23 a~NLA~~La~~G-~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 23 SQNTLAAMAEMG-QRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HHHHHHHHHHCC-CcEEEEEccCCCCc-cchhcc
Confidence 444444555556 79999999999887 554543
No 11
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=74.97 E-value=3.9 Score=34.35 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=14.9
Q ss_pred HHhcCCCeEEEEecCCcCCc
Q 027427 185 FVQLNISRVMIIDLDAHQGN 204 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGn 204 (223)
+.+.| +||++||+|..+||
T Consensus 25 la~~g-~~VlliD~D~~~~~ 43 (251)
T TIGR01969 25 LAKLG-KKVLALDADITMAN 43 (251)
T ss_pred HHHCC-CeEEEEeCCCCCcc
Confidence 33445 79999999998875
No 12
>PHA02518 ParA-like protein; Provisional
Probab=66.64 E-value=9.5 Score=31.05 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=15.6
Q ss_pred HHhcCCCeEEEEecCCcCCchhhH
Q 027427 185 FVQLNISRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~ 208 (223)
+.+.| +||++||+|- +||-+..
T Consensus 25 la~~g-~~vlliD~D~-q~~~~~~ 46 (211)
T PHA02518 25 LHADG-HKVLLVDLDP-QGSSTDW 46 (211)
T ss_pred HHhCC-CeEEEEeCCC-CCChHHH
Confidence 33445 7999999995 5666654
No 13
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=65.90 E-value=8.4 Score=33.26 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=13.3
Q ss_pred HHhcCCCeEEEEecCCcCC
Q 027427 185 FVQLNISRVMIIDLDAHQG 203 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHG 203 (223)
+.+.| +||++||+|..-+
T Consensus 24 La~~G-~~VlliD~D~q~~ 41 (275)
T TIGR01287 24 LAEMG-KKVMIVGCDPKAD 41 (275)
T ss_pred HHHCC-CeEEEEeCCCCCC
Confidence 33446 7999999998743
No 14
>PRK10818 cell division inhibitor MinD; Provisional
Probab=65.11 E-value=8.9 Score=32.89 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.7
Q ss_pred hcCCCeEEEEecCCcCCch
Q 027427 187 QLNISRVMIIDLDAHQGNG 205 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnG 205 (223)
+.| +||++||+|...||-
T Consensus 29 ~~g-~~vllvD~D~~~~~~ 46 (270)
T PRK10818 29 QKG-KKTVVIDFDIGLRNL 46 (270)
T ss_pred HCC-CeEEEEECCCCCCCh
Confidence 445 799999999987774
No 15
>CHL00175 minD septum-site determining protein; Validated
Probab=62.96 E-value=11 Score=32.75 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=16.5
Q ss_pred HhcCCCeEEEEecCCcCCchhh
Q 027427 186 VQLNISRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGnGTq 207 (223)
.+.| +||++||+|...||-+.
T Consensus 41 a~~g-~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 41 ARLG-YRVALIDADIGLRNLDL 61 (281)
T ss_pred HhCC-CeEEEEeCCCCCCChhh
Confidence 3445 69999999999887554
No 16
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=62.10 E-value=8.9 Score=33.16 Aligned_cols=18 Identities=6% Similarity=0.420 Sum_probs=14.1
Q ss_pred HhcCCCeEEEEecCCcCCc
Q 027427 186 VQLNISRVMIIDLDAHQGN 204 (223)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGn 204 (223)
.+.| +||++||+|.+..+
T Consensus 26 a~~G-~rVllvD~Dpq~~~ 43 (273)
T PRK13232 26 STMG-NKILLVGCDPKADS 43 (273)
T ss_pred HhhC-CCeEEEeccccccc
Confidence 3445 69999999998654
No 17
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=60.27 E-value=13 Score=29.25 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=16.3
Q ss_pred hcCCCeEEEEecCCcCCchhhH
Q 027427 187 QLNISRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~ 208 (223)
+.| +||++||.|...||-+..
T Consensus 26 ~~g-~~vllvD~D~~~~~~~~~ 46 (179)
T cd02036 26 QLG-YKVVLIDADLGLRNLDLI 46 (179)
T ss_pred hCC-CeEEEEeCCCCCCCchhh
Confidence 345 699999999998876553
No 18
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=60.00 E-value=15 Score=31.32 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=14.0
Q ss_pred hcCCCeEEEEecCCcCCchhh
Q 027427 187 QLNISRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq 207 (223)
+.| +||++||+|- +||-|.
T Consensus 27 ~~G-~kVlliD~Dp-q~n~~~ 45 (270)
T cd02040 27 EMG-KKVMIVGCDP-KADSTR 45 (270)
T ss_pred hCC-CeEEEEEcCC-CCCchh
Confidence 445 6999999998 465554
No 19
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=58.10 E-value=12 Score=32.38 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=14.8
Q ss_pred HHhcCCCeEEEEecCCcCCchhh
Q 027427 185 FVQLNISRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq 207 (223)
+.+.| +||++||+|-. ||=|.
T Consensus 25 La~~G-~rVLliD~Dpq-~n~t~ 45 (279)
T PRK13230 25 LAESG-KKVLVVGCDPK-ADCTR 45 (279)
T ss_pred HHhCC-CEEEEEeeCCc-ccccc
Confidence 34556 69999999995 55444
No 20
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=53.37 E-value=23 Score=29.58 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=12.5
Q ss_pred HhcCCCeEEEEecCCcCCc
Q 027427 186 VQLNISRVMIIDLDAHQGN 204 (223)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGn 204 (223)
.+.| +||++||+|.. |+
T Consensus 27 a~~g-~~VlliD~D~q-~~ 43 (246)
T TIGR03371 27 KLLG-EPVLAIDLDPQ-NL 43 (246)
T ss_pred HhCC-CcEEEEeCCCc-ch
Confidence 3445 69999999984 44
No 21
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=52.52 E-value=20 Score=30.56 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=36.5
Q ss_pred hcCcEeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhcCCCeEEEEecCCc-CCch
Q 027427 149 ERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAH-QGNG 205 (223)
Q Consensus 149 ~~~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvH-HGnG 205 (223)
++|.++..-.| ++....|+..|..=.|+.+ ...|++++.|+|+|.= .|.+
T Consensus 9 ~~G~~Vr~~~G------~~~~~~~~~~dP~~~a~~~-~~~g~~~l~ivDLdaa~~g~~ 59 (229)
T PF00977_consen 9 KNGRVVRLVKG------DRFSETVYSGDPVEVAKAF-NEQGADELHIVDLDAAKEGRG 59 (229)
T ss_dssp ETTEEEEESTT------CCSCEECECCCHHHHHHHH-HHTT-SEEEEEEHHHHCCTHH
T ss_pred ECCEEEECCCe------ecceeeEECcCHHHHHHHH-HHcCCCEEEEEEccCcccCch
Confidence 35666666656 4577789988988888877 5678999999999964 3555
No 22
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=52.05 E-value=20 Score=29.66 Aligned_cols=19 Identities=11% Similarity=0.396 Sum_probs=13.5
Q ss_pred hcCCCeEEEEecCCcCCchhh
Q 027427 187 QLNISRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq 207 (223)
+.| +||++||.|.. ||-|.
T Consensus 26 ~~G-~rvLliD~D~q-~~~~~ 44 (212)
T cd02117 26 EMG-KKVLQVGCDPK-ADSTR 44 (212)
T ss_pred HCC-CcEEEEeCCCC-CCccc
Confidence 445 69999999965 55444
No 23
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=51.74 E-value=18 Score=31.03 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=13.3
Q ss_pred hcCCCeEEEEecCCcCCchh
Q 027427 187 QLNISRVMIIDLDAHQGNGH 206 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGT 206 (223)
+.| +||++||+|- +||-|
T Consensus 26 ~~g-~rVLliD~D~-q~~~~ 43 (268)
T TIGR01281 26 KLG-KRVLQIGCDP-KHDST 43 (268)
T ss_pred hCC-CeEEEEecCc-ccccc
Confidence 445 6999999997 46544
No 24
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=51.55 E-value=20 Score=30.08 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=12.1
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
+||++||.|...||
T Consensus 31 ~~vlliD~D~~~~~ 44 (261)
T TIGR01968 31 KKVVLIDADIGLRN 44 (261)
T ss_pred CeEEEEECCCCCCC
Confidence 69999999997665
No 25
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=51.36 E-value=19 Score=31.73 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=15.9
Q ss_pred HhcCCCeEEEEecCCcCCchhhHhh
Q 027427 186 VQLNISRVMIIDLDAHQGNGHEKDF 210 (223)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGnGTq~if 210 (223)
.+.| +||++||+|....+ |.-+|
T Consensus 29 a~~g-~kVLliD~D~q~~~-~~~~~ 51 (295)
T PRK13234 29 VEMG-QKILIVGCDPKADS-TRLIL 51 (295)
T ss_pred HHCC-CeEEEEeccccccc-ccccc
Confidence 3445 69999999998655 44333
No 26
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=51.19 E-value=20 Score=30.71 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=13.8
Q ss_pred hcCCCeEEEEecCCcCCchhh
Q 027427 187 QLNISRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq 207 (223)
+.| +||++||.|- +||=|+
T Consensus 28 ~~G-~kVLliD~Dp-q~~~t~ 46 (270)
T PRK13185 28 KLG-KKVLQIGCDP-KHDSTF 46 (270)
T ss_pred HCC-CeEEEEeccC-Ccchhh
Confidence 445 6999999997 465554
No 27
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=50.58 E-value=5.4 Score=27.42 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=7.3
Q ss_pred CcccccchH
Q 027427 169 GGFCAYADI 177 (223)
Q Consensus 169 ~GFC~fNnv 177 (223)
-=||+|||-
T Consensus 16 TKFcYyNNy 24 (63)
T PF02701_consen 16 TKFCYYNNY 24 (63)
T ss_pred CEEEeecCC
Confidence 359999994
No 28
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=49.89 E-value=42 Score=24.71 Aligned_cols=14 Identities=43% Similarity=0.862 Sum_probs=12.8
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
++|+++|.|.++|+
T Consensus 30 ~~~~l~d~d~~~~~ 43 (106)
T cd03111 30 RRVLLVDLDLQFGD 43 (106)
T ss_pred CcEEEEECCCCCCC
Confidence 79999999999886
No 29
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=49.70 E-value=47 Score=24.47 Aligned_cols=44 Identities=14% Similarity=-0.072 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEecc
Q 027427 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGY 222 (223)
Q Consensus 177 vAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH 222 (223)
+.+.+.++++ .|. .|-++|.+++..+-.+.+-..+|+++.+|.+
T Consensus 17 l~~la~~l~~-~G~-~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 17 LLYLAAYLRK-AGH-EVDILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHHHH-TTB-EEEEEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHH-CCC-eEEEECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 3444555554 465 8999999999988888888899999999973
No 30
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=49.01 E-value=22 Score=31.55 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=12.8
Q ss_pred hcCCCeEEEEecCCcCC
Q 027427 187 QLNISRVMIIDLDAHQG 203 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHG 203 (223)
+.| +||++||+|...+
T Consensus 26 ~~g-~rVLlID~Dpq~~ 41 (296)
T TIGR02016 26 EMG-KRVLQLGCDPKHD 41 (296)
T ss_pred HCC-CeEEEEEecCCCC
Confidence 444 6999999999864
No 31
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=48.05 E-value=20 Score=30.95 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=14.2
Q ss_pred HHHHhcCCCeEEEEecCCcCC
Q 027427 183 YAFVQLNISRVMIIDLDAHQG 203 (223)
Q Consensus 183 ~l~~~~~~~RV~IiD~DvHHG 203 (223)
+++.+.| +||++||+|--..
T Consensus 23 ~~La~~G-~rVLlID~Dpq~~ 42 (274)
T PRK13235 23 AGLAEMG-KKVMVVGCDPKAD 42 (274)
T ss_pred HHHHHCC-CcEEEEecCCccc
Confidence 3334455 6999999998654
No 32
>PRK10037 cell division protein; Provisional
Probab=47.91 E-value=20 Score=30.48 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=14.2
Q ss_pred HHhcCCCeEEEEecCCcCCchh
Q 027427 185 FVQLNISRVMIIDLDAHQGNGH 206 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGT 206 (223)
+.+.| +||++||+|-. ||-+
T Consensus 26 La~~G-~rVLlID~D~q-~~~s 45 (250)
T PRK10037 26 LQMLG-ENVLVIDACPD-NLLR 45 (250)
T ss_pred HHhcC-CcEEEEeCChh-hhHH
Confidence 33445 69999999994 6643
No 33
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=44.29 E-value=28 Score=29.82 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=12.0
Q ss_pred hcCCCeEEEEecCCcCCc
Q 027427 187 QLNISRVMIIDLDAHQGN 204 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGn 204 (223)
+.| +||++||.|- +||
T Consensus 26 ~~G-~rvlliD~Dp-q~~ 41 (267)
T cd02032 26 KRG-KKVLQIGCDP-KHD 41 (267)
T ss_pred HCC-CcEEEEecCC-CCC
Confidence 445 6999999996 354
No 34
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=41.53 E-value=34 Score=29.45 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=12.8
Q ss_pred cCCCeEEEEecCCcCCc
Q 027427 188 LNISRVMIIDLDAHQGN 204 (223)
Q Consensus 188 ~~~~RV~IiD~DvHHGn 204 (223)
.| +||++||+|-+..+
T Consensus 30 ~G-~rvLliD~Dpq~~~ 45 (275)
T PRK13233 30 HD-KKVFIHGCDPKADS 45 (275)
T ss_pred cC-CeEEEeccCcCcCh
Confidence 35 69999999998644
No 35
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=40.57 E-value=33 Score=27.17 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.6
Q ss_pred hcCCCeEEEEecCCcC
Q 027427 187 QLNISRVMIIDLDAHQ 202 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHH 202 (223)
+.| +||++||.|.-.
T Consensus 26 ~~g-~~vllvD~D~q~ 40 (169)
T cd02037 26 KLG-YKVGLLDADIYG 40 (169)
T ss_pred HcC-CcEEEEeCCCCC
Confidence 345 799999999844
No 36
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=39.32 E-value=39 Score=30.94 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=14.4
Q ss_pred hcCCCeEEEEecCCcCCchhh
Q 027427 187 QLNISRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq 207 (223)
+.| +||++||+|. +||=|.
T Consensus 131 ~~G-~rVLlID~Dp-Q~~ls~ 149 (387)
T TIGR03453 131 LRG-YRVLAIDLDP-QASLSA 149 (387)
T ss_pred hcC-CCEEEEecCC-CCCHHH
Confidence 345 6999999997 777554
No 37
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=38.94 E-value=40 Score=27.51 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=12.1
Q ss_pred hcCCCeEEEEecCCcCC
Q 027427 187 QLNISRVMIIDLDAHQG 203 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHG 203 (223)
+.| +||++||+|....
T Consensus 44 ~~G-~rVllID~D~~~~ 59 (204)
T TIGR01007 44 QAG-YKTLLIDGDMRNS 59 (204)
T ss_pred hCC-CeEEEEeCCCCCh
Confidence 334 6999999998653
No 38
>PF13050 DUF3911: Protein of unknown function (DUF3911)
Probab=38.93 E-value=11 Score=26.20 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=8.2
Q ss_pred CCcccccchH
Q 027427 168 GGGFCAYADI 177 (223)
Q Consensus 168 ~~GFC~fNnv 177 (223)
.-|||-|||-
T Consensus 25 tkgfckf~ny 34 (77)
T PF13050_consen 25 TKGFCKFNNY 34 (77)
T ss_pred cccccccCCE
Confidence 3589999995
No 39
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=37.64 E-value=37 Score=29.98 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=12.7
Q ss_pred HHHhcCCCeEEEEecCCc
Q 027427 184 AFVQLNISRVMIIDLDAH 201 (223)
Q Consensus 184 l~~~~~~~RV~IiD~DvH 201 (223)
++.+.| +||++||+|-.
T Consensus 23 ~La~~G-~rVLlID~DpQ 39 (290)
T CHL00072 23 ALARRG-KKVLQIGCDPK 39 (290)
T ss_pred HHHHCC-CeEEEEeccCC
Confidence 334455 69999999976
No 40
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=37.28 E-value=44 Score=28.68 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=13.2
Q ss_pred hcCCCeEEEEecCCcCCc
Q 027427 187 QLNISRVMIIDLDAHQGN 204 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGn 204 (223)
+.| +||++||+|....+
T Consensus 130 ~~g-~~VllID~D~~~~~ 146 (274)
T TIGR03029 130 QLG-EKTLLIDANLRDPV 146 (274)
T ss_pred hcC-CeEEEEeCCCCCcc
Confidence 345 79999999987654
No 41
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=35.61 E-value=47 Score=30.88 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=16.0
Q ss_pred HHhcCCCeEEEEecCCcCCchhhH
Q 027427 185 FVQLNISRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~ 208 (223)
+.+.| +||++||+|-. ||=|..
T Consensus 146 LA~~G-~rVLlIDlDpQ-~~lt~~ 167 (405)
T PRK13869 146 LALQG-YRVLAVDLDPQ-ASLSAL 167 (405)
T ss_pred HHhcC-CceEEEcCCCC-CCHHHH
Confidence 33456 69999999994 776653
No 42
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=35.61 E-value=93 Score=26.33 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=28.1
Q ss_pred ccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhh
Q 027427 171 FCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 171 FC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq 207 (223)
+|+..|..-.|+++. +.|++++.|+|+|..-|.+.+
T Consensus 32 ~~~~~dP~~~a~~~~-~~g~~~l~ivDLd~~~~~~~n 67 (221)
T TIGR00734 32 SRLSSSPDDAAKVIE-EIGARFIYIADLDRIVGLGDN 67 (221)
T ss_pred eecCCCHHHHHHHHH-HcCCCEEEEEEcccccCCcch
Confidence 588888777777665 568999999999997665543
No 43
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=35.40 E-value=41 Score=30.55 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.5
Q ss_pred CeEEEEecCCcCCchhhHhh
Q 027427 191 SRVMIIDLDAHQGNGHEKDF 210 (223)
Q Consensus 191 ~RV~IiD~DvHHGnGTq~if 210 (223)
+||++||.|.++++ +..+|
T Consensus 60 ~rVllid~D~~~~~-~~~~~ 78 (329)
T cd02033 60 KRVLLIGCDPKSDT-TSLLF 78 (329)
T ss_pred CcEEEEEeeecccc-cchhc
Confidence 79999999999854 44444
No 44
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.84 E-value=41 Score=24.62 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCcHHHHhhhhhh
Q 027427 1 MSSSSSPSVTTDAETLKRNRIL 22 (223)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (223)
||++.+|-+...+..+|+++..
T Consensus 2 ~s~~~~Pg~a~~~~~~Rqrk~~ 23 (88)
T KOG3457|consen 2 MSGSRAPGGAAATAGRRQRKSG 23 (88)
T ss_pred CCCCCCCCchhhHHHHHhcccc
Confidence 7899999777766666666665
No 45
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.55 E-value=76 Score=27.13 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=29.5
Q ss_pred cCcEeecCCCCCCCCCCCCCcccccc-hHHHHHHHHHHhcCCCeEEEEecCCcC
Q 027427 150 RGWAINVGGGFHHCSADEGGGFCAYA-DISLCIHYAFVQLNISRVMIIDLDAHQ 202 (223)
Q Consensus 150 ~~~a~~~~~G~HHA~~~~~~GFC~fN-nvAIAa~~l~~~~~~~RV~IiD~DvHH 202 (223)
+|.|+..-.| ....+-.|+ |..=.|+++.+..|++++.|+|+|.=-
T Consensus 12 ~G~~Vr~~~G-------~~~~~~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~ 58 (234)
T PRK13587 12 GSTSVRLTEG-------KYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAK 58 (234)
T ss_pred CCEEEEcCcc-------cCCCceEeCCCHHHHHHHHHhccCCCEEEEEECcccc
Confidence 5556554444 333345554 655566666665689999999999763
No 46
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=34.43 E-value=32 Score=29.40 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.3
Q ss_pred HhcCCCeEEEEecCCc
Q 027427 186 VQLNISRVMIIDLDAH 201 (223)
Q Consensus 186 ~~~~~~RV~IiD~DvH 201 (223)
.+.| ||++||+|..
T Consensus 27 a~~G--rVLliD~Dpq 40 (264)
T PRK13231 27 SNDH--RVLVIGCDPK 40 (264)
T ss_pred CCCC--EEEEEeEccC
Confidence 3456 8999999976
No 47
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=33.59 E-value=51 Score=29.19 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=11.6
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
+||++||.|...|+
T Consensus 123 ~~VlLvD~D~~~~~ 136 (322)
T TIGR03815 123 LRTLLVDADPWGGG 136 (322)
T ss_pred CCEEEEecCCCCCC
Confidence 79999999977653
No 48
>PRK10175 lipoprotein; Provisional
Probab=32.39 E-value=45 Score=23.80 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=6.6
Q ss_pred CCCeEEEEec
Q 027427 189 NISRVMIIDL 198 (223)
Q Consensus 189 ~~~RV~IiD~ 198 (223)
+.+-++|||+
T Consensus 45 ~w~~l~ilDL 54 (75)
T PRK10175 45 AWRYITILDL 54 (75)
T ss_pred CCceEEEEec
Confidence 4455788884
No 49
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=31.52 E-value=58 Score=25.79 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=11.1
Q ss_pred CeEEEEecCCcCCch
Q 027427 191 SRVMIIDLDAHQGNG 205 (223)
Q Consensus 191 ~RV~IiD~DvHHGnG 205 (223)
+||++||+|.--.+.
T Consensus 28 ~~VlliD~D~~~~~~ 42 (195)
T PF01656_consen 28 KKVLLIDLDPQAPNL 42 (195)
T ss_dssp S-EEEEEESTTSHHH
T ss_pred ccccccccCcccccH
Confidence 799999999765544
No 50
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=31.35 E-value=54 Score=27.94 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=14.3
Q ss_pred hcCCCeEEEEecCCcCCchhhH
Q 027427 187 QLNISRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~ 208 (223)
+.| +||++||.|- +|+=+..
T Consensus 28 ~~G-~~VlliD~Dp-Q~s~~~w 47 (231)
T PRK13849 28 SDG-KRVALFEADE-NRPLTRW 47 (231)
T ss_pred hCC-CcEEEEeCCC-CCCHHHH
Confidence 345 6999999996 6664443
No 51
>PRK11670 antiporter inner membrane protein; Provisional
Probab=31.32 E-value=59 Score=29.85 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=15.1
Q ss_pred hcCCCeEEEEecCCcCCchhhHhh
Q 027427 187 QLNISRVMIIDLDAHQGNGHEKDF 210 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~if 210 (223)
+.| +||++||+|....+ +..+|
T Consensus 134 ~~G-~rVlLID~D~qgps-~~~~l 155 (369)
T PRK11670 134 AEG-AKVGILDADIYGPS-IPTML 155 (369)
T ss_pred HCC-CcEEEEeCCCCCCC-cchhc
Confidence 445 69999999997644 33344
No 52
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=31.28 E-value=63 Score=27.48 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=28.7
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeEEEEecCCcCCch
Q 027427 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205 (223)
Q Consensus 168 ~~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnG 205 (223)
.+.||+..|..-.|+.+.+. |++++.|+|+|.--|.+
T Consensus 28 ~~~~~~~~dp~~~a~~~~~~-g~~~l~i~DLd~~~~~~ 64 (233)
T cd04723 28 TSNLCSTSDPLDVARAYKEL-GFRGLYIADLDAIMGRG 64 (233)
T ss_pred ccCcccCCCHHHHHHHHHHC-CCCEEEEEeCccccCCC
Confidence 36789887777777777655 89999999999865444
No 53
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=30.80 E-value=56 Score=28.46 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCC
Q 027427 177 ISLCIHYAFVQLNISRVMIIDLDA 200 (223)
Q Consensus 177 vAIAa~~l~~~~~~~RV~IiD~Dv 200 (223)
++.+.-+++++.| ++|+.||+|.
T Consensus 18 ltAnLA~aL~~~G-~~VlaID~dp 40 (243)
T PF06564_consen 18 LTANLAWALARLG-ESVLAIDLDP 40 (243)
T ss_pred HHHHHHHHHHHCC-CcEEEEeCCc
Confidence 4444455666666 7999999993
No 54
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=30.63 E-value=28 Score=32.06 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.2
Q ss_pred EEEEecCCcCC---------chhhHhhhcCCCEEE
Q 027427 193 VMIIDLDAHQG---------NGHEKDFSSDSRSCL 218 (223)
Q Consensus 193 V~IiD~DvHHG---------nGTq~if~~d~~Vl~ 218 (223)
|-+=|+.+||| ||||++|..|+.|++
T Consensus 372 ~H~GdCG~H~~~~ce~~~~~~~v~~l~~~~K~~~f 406 (455)
T KOG2791|consen 372 VHFGDCGLHQGRGCEGDCIDNGVVNLEVTDKVVNF 406 (455)
T ss_pred EEecccccccCCCCCcchhhhhhHhhhhcCceEec
Confidence 45669999999 999999999887764
No 55
>cd00525 AE_Prim_S_like AE_Prim_S_like: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. The replication machineries of A/Es are distinct from that of bacteria. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. In addition to its catalytic role in replication, eukaryotic DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. Pfu41 and Pfu46 comprise the primase complex of the archaea Pyrococcus furiosus; these proteins have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulates the pri
Probab=30.52 E-value=41 Score=25.55 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=12.3
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
..+++||+|.++++
T Consensus 54 ~~~iv~DiD~~~~~ 67 (136)
T cd00525 54 PDLLVFDLDPDDYD 67 (136)
T ss_pred CCEEEEECCCCCCC
Confidence 58999999999974
No 56
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=29.89 E-value=70 Score=26.34 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.2
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
+||++||.|.+.++
T Consensus 66 ~~VLlvD~D~~~~~ 79 (207)
T TIGR03018 66 KTVLLIDADLRRPS 79 (207)
T ss_pred CeEEEEECCCCChh
Confidence 79999999998754
No 57
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.97 E-value=1.2e+02 Score=26.16 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=29.4
Q ss_pred CCCCcccccchHHHHHHHHHHhcCCCeEEEEecCC-cCCchhh
Q 027427 166 DEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDA-HQGNGHE 207 (223)
Q Consensus 166 ~~~~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~Dv-HHGnGTq 207 (223)
++....|+..|..-.|+.+.+ .|++++.|+|+|. --|.+..
T Consensus 21 ~~~~~~~~~~dP~~~A~~~~~-~ga~~lhivDLd~a~~g~~~n 62 (241)
T PRK14114 21 KKENTIFYEKDPAELVEKLIE-EGFTLIHVVDLSKAIENSVEN 62 (241)
T ss_pred ccCcceEECCCHHHHHHHHHH-CCCCEEEEEECCCcccCCcch
Confidence 344455777777777777765 6899999999995 4576644
No 58
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=27.72 E-value=17 Score=15.53 Aligned_cols=6 Identities=17% Similarity=0.506 Sum_probs=4.3
Q ss_pred cccchH
Q 027427 172 CAYADI 177 (223)
Q Consensus 172 C~fNnv 177 (223)
|+++|+
T Consensus 1 C~i~nC 6 (9)
T PF00220_consen 1 CYIRNC 6 (9)
T ss_pred CccccC
Confidence 777775
No 59
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=25.65 E-value=1.4e+02 Score=27.12 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCeEEEEe--cCCcCC-----chhhHhhhcCCCEEEEecc
Q 027427 180 CIHYAFVQLNISRVMIID--LDAHQG-----NGHEKDFSSDSRSCLYSGY 222 (223)
Q Consensus 180 Aa~~l~~~~~~~RV~IiD--~DvHHG-----nGTq~if~~d~~Vl~iSlH 222 (223)
|+..+....+.++|+||| ++++.. +.+-+...+|++|+.||-+
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~ 137 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAW 137 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEee
Confidence 666666666678999996 445666 7788889999999999854
No 60
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=24.90 E-value=1.1e+02 Score=27.64 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhc
Q 027427 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212 (223)
Q Consensus 177 vAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~ 212 (223)
.+.++.|+.+..+.+||+||+-|.=.|.|..+.|..
T Consensus 135 ~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~ 170 (366)
T COG0683 135 AAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKA 170 (366)
T ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHH
Confidence 455778888887767999999999999999998864
No 61
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=24.88 E-value=93 Score=27.11 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=11.9
Q ss_pred CeEEEEecCCcCC
Q 027427 191 SRVMIIDLDAHQG 203 (223)
Q Consensus 191 ~RV~IiD~DvHHG 203 (223)
+||++||.|.+..
T Consensus 87 ~rVlliDaD~~gp 99 (265)
T COG0489 87 KRVLLLDADLRGP 99 (265)
T ss_pred CcEEEEeCcCCCC
Confidence 7999999999876
No 62
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.85 E-value=1.6e+02 Score=25.24 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=25.4
Q ss_pred cccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhh
Q 027427 170 GFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 170 GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq 207 (223)
..++ .|..-.|+.+.+ .|++++.|+|+|.--|.+.+
T Consensus 26 ~~~~-~dP~~~a~~~~~-~ga~~lhivDLd~a~~~~~n 61 (232)
T PRK13586 26 GLIL-GNPIEIASKLYN-EGYTRIHVVDLDAAEGVGNN 61 (232)
T ss_pred ceEc-CCHHHHHHHHHH-CCCCEEEEEECCCcCCCcch
Confidence 4443 466666666654 68999999999987765544
No 63
>PRK11519 tyrosine kinase; Provisional
Probab=22.57 E-value=1.3e+02 Score=30.04 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=12.3
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
+||++||+|.+.++
T Consensus 556 ~rvLlID~Dlr~~~ 569 (719)
T PRK11519 556 KRVLLIDCDMRKGY 569 (719)
T ss_pred CcEEEEeCCCCCCc
Confidence 79999999998764
No 64
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.51 E-value=1.1e+02 Score=30.71 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=13.8
Q ss_pred CeEEEEecCCcCCchhh
Q 027427 191 SRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 191 ~RV~IiD~DvHHGnGTq 207 (223)
+||++||+|...++-+.
T Consensus 576 ~rvLlID~D~~~~~l~~ 592 (754)
T TIGR01005 576 KRALLIDADGRKAALSQ 592 (754)
T ss_pred CeEEEEeCCCCchhHHH
Confidence 79999999999775443
No 65
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.01 E-value=1.3e+02 Score=26.43 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCCCcccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhcCCC
Q 027427 166 DEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR 215 (223)
Q Consensus 166 ~~~~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~ 215 (223)
|-..|||---.||-.|..+.-..|.++|.+.-+|.-. .+--||++++
T Consensus 161 DI~~G~fDagTVaY~ALQIaY~LGF~~I~iaGLDMnN---s~PRFYEt~~ 207 (269)
T PRK09822 161 DISIGYCSCHTIAYTAIQVAYSLKYGRIICSGLDLTG---SCPRFYDEST 207 (269)
T ss_pred ccccCeeeccchHHHHHHHHHHcCCCEEEEEeeccCC---CCCccccCCC
Confidence 4567899999999988888878899999999999866 4888988753
No 66
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=21.86 E-value=96 Score=26.63 Aligned_cols=16 Identities=13% Similarity=0.426 Sum_probs=12.8
Q ss_pred hcCCCeEEEEecCCcCC
Q 027427 187 QLNISRVMIIDLDAHQG 203 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHG 203 (223)
+.| +||++||+|-.|.
T Consensus 26 ~~g-~~vLlvd~D~~~s 41 (254)
T cd00550 26 EQG-KKVLLVSTDPAHS 41 (254)
T ss_pred HCC-CCceEEeCCCccc
Confidence 335 7999999999775
No 67
>COG3570 StrB Streptomycin 6-kinase [Defense mechanisms]
Probab=21.55 E-value=55 Score=28.48 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHHHhcCCCeEEEEecCCcCCc
Q 027427 173 AYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204 (223)
Q Consensus 173 ~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGn 204 (223)
+|=.+|-+|++|++. .+-|--+-=|.||||
T Consensus 143 i~v~aA~~A~~LL~~--p~di~pLHGDlHH~N 172 (274)
T COG3570 143 IYVEAARAAQTLLDT--PRDIRPLHGDLHHGN 172 (274)
T ss_pred cchhHHHHHHHHhcC--ccccccCcccccccc
Confidence 567888888999976 344556667899997
No 68
>PRK09492 treR trehalose repressor; Provisional
Probab=20.18 E-value=1.1e+02 Score=26.13 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCc-ccccchHHHHHHHHHHhcCCCeEEEEecCCc
Q 027427 168 GGG-FCAYADISLCIHYAFVQLNISRVMIIDLDAH 201 (223)
Q Consensus 168 ~~G-FC~fNnvAIAa~~l~~~~~~~RV~IiD~DvH 201 (223)
..+ ||.-+..|+++..++++.|++.|.|+-+|-.
T Consensus 233 ~~ai~~~~D~~A~g~~~al~~~g~~disvig~d~~ 267 (315)
T PRK09492 233 TTALVCATDTLALGASKYLQEQGRDDIQVAGVGNT 267 (315)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCceEEEeeCch
Confidence 445 6766777888888888888888999988753
No 69
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=20.03 E-value=1.1e+02 Score=26.95 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhcCCCeEEEEecCCcCC
Q 027427 176 DISLCIHYAFVQLNISRVMIIDLDAHQG 203 (223)
Q Consensus 176 nvAIAa~~l~~~~~~~RV~IiD~DvHHG 203 (223)
|+|+|. .+.| +||.+||.|+++-
T Consensus 20 ~lA~aL----a~~G-~kVg~lD~Di~q~ 42 (261)
T PF09140_consen 20 NLAVAL----ARMG-KKVGLLDLDIRQP 42 (261)
T ss_dssp HHHHHH----HCTT---EEEEE--TTT-
T ss_pred HHHHHH----HHCC-CeEEEEecCCCCC
Confidence 455552 2345 7999999999764
Done!