Query 027427
Match_columns 223
No_of_seqs 170 out of 1296
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqp_A HD7A, histone deacetyla 100.0 3.3E-61 1.1E-65 439.8 20.5 221 2-223 4-249 (421)
2 1zz1_A Histone deacetylase-lik 100.0 2.9E-59 9.9E-64 423.7 17.2 182 33-223 1-204 (369)
3 4a69_A Histone deacetylase 3,; 100.0 2.6E-58 8.9E-63 417.6 17.6 188 32-223 2-194 (376)
4 3max_A HD2, histone deacetylas 100.0 6.6E-58 2.3E-62 413.3 17.9 188 32-223 2-194 (367)
5 1c3p_A Protein (HDLP (histone 100.0 2.6E-58 8.9E-63 418.2 15.1 188 33-223 2-192 (375)
6 2vqm_A HD4, histone deacetylas 100.0 1.3E-57 4.6E-62 418.2 15.8 193 30-223 5-220 (413)
7 3q9b_A Acetylpolyamine amidohy 100.0 1.1E-56 3.7E-61 402.0 16.9 184 35-223 1-219 (341)
8 3ew8_A HD8, histone deacetylas 100.0 1.1E-56 3.9E-61 407.3 15.0 190 28-223 9-202 (388)
9 3men_A Acetylpolyamine aminohy 100.0 1.5E-56 5.1E-61 403.3 12.9 182 35-223 22-237 (362)
10 1cp2_A CP2, nitrogenase iron p 65.7 6.5 0.00022 32.0 4.4 23 187-211 27-49 (269)
11 2afh_E Nitrogenase iron protei 60.5 8.9 0.0003 31.8 4.4 22 187-210 28-49 (289)
12 1g3q_A MIND ATPase, cell divis 59.1 8.6 0.00029 30.5 3.9 14 191-204 32-45 (237)
13 3pg5_A Uncharacterized protein 58.5 8.9 0.0003 33.3 4.2 22 187-210 28-49 (361)
14 1hyq_A MIND, cell division inh 58.5 8.9 0.0003 31.1 3.9 17 187-204 29-45 (263)
15 3q9l_A Septum site-determining 57.7 9.3 0.00032 30.7 3.9 19 187-206 29-47 (260)
16 1wcv_1 SOJ, segregation protei 57.5 10 0.00035 30.9 4.2 15 191-206 36-50 (257)
17 3ea0_A ATPase, para family; al 56.3 12 0.0004 29.7 4.3 18 191-208 35-52 (245)
18 2xj4_A MIPZ; replication, cell 54.9 12 0.00042 31.0 4.3 21 187-208 31-51 (286)
19 3kjh_A CO dehydrogenase/acetyl 54.8 10 0.00036 29.9 3.7 19 186-206 25-43 (254)
20 3end_A Light-independent proto 51.2 18 0.00061 30.1 4.8 20 187-208 67-86 (307)
21 4dzz_A Plasmid partitioning pr 48.9 28 0.00097 26.5 5.3 20 187-208 28-47 (206)
22 3la6_A Tyrosine-protein kinase 46.6 16 0.00055 30.7 3.8 14 191-204 122-135 (286)
23 3k9g_A PF-32 protein; ssgcid, 45.9 17 0.00058 29.5 3.7 20 188-209 54-73 (267)
24 2oze_A ORF delta'; para, walke 45.7 18 0.00063 29.8 4.0 20 187-208 63-82 (298)
25 3fkq_A NTRC-like two-domain pr 44.0 20 0.00068 31.1 4.0 13 191-204 173-185 (373)
26 3ug7_A Arsenical pump-driving 43.8 40 0.0014 29.0 5.9 23 188-213 53-75 (349)
27 2ph1_A Nucleotide-binding prot 42.7 21 0.00073 29.0 3.8 18 187-205 45-62 (262)
28 3bfv_A CAPA1, CAPB2, membrane 41.9 27 0.00092 29.0 4.4 14 191-204 112-125 (271)
29 3cio_A ETK, tyrosine-protein k 41.5 26 0.0009 29.5 4.3 15 191-205 134-148 (299)
30 2wh0_Q Pkcev3, protein kinase 41.4 12 0.0004 20.6 1.3 16 3-18 3-18 (31)
31 3fwy_A Light-independent proto 39.1 24 0.00083 30.1 3.7 20 185-206 72-91 (314)
32 3cwq_A Para family chromosome 38.2 27 0.00094 27.4 3.7 19 186-207 26-44 (209)
33 3ez2_A Plasmid partition prote 38.0 27 0.00093 30.4 4.0 14 191-205 144-157 (398)
34 3zq6_A Putative arsenical pump 37.5 28 0.00094 29.6 3.8 20 191-212 43-62 (324)
35 2h4a_A YRAM (HI1655); perplasm 34.5 15 0.00051 31.4 1.6 41 171-212 104-144 (325)
36 3ez9_A Para; DNA binding, wing 34.0 24 0.00083 30.8 3.0 13 191-204 147-159 (403)
37 2woj_A ATPase GET3; tail-ancho 30.3 39 0.0013 29.2 3.7 23 187-212 46-68 (354)
38 2woo_A ATPase GET3; tail-ancho 28.4 45 0.0015 28.4 3.6 22 187-211 45-66 (329)
39 3iqw_A Tail-anchored protein t 26.5 1E+02 0.0036 26.4 5.7 23 187-212 42-64 (334)
40 3ckm_A YRAM (HI1655), LPOA; pe 21.5 35 0.0012 28.4 1.6 41 171-212 106-146 (327)
41 3io3_A DEHA2D07832P; chaperone 20.5 91 0.0031 26.9 4.1 20 191-212 49-68 (348)
No 1
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=3.3e-61 Score=439.85 Aligned_cols=221 Identities=23% Similarity=0.265 Sum_probs=167.8
Q ss_pred CCCCCCCCCCcHHHHhhhhhhcccccccCCC-CceeEEeCcccccccCC--CCCCCCCCchHHHHHHHHHHHCCCCCCce
Q 027427 2 SSSSSPSVTTDAETLKRNRILSSKLYFDIPI-FKLPLIYSPDYDISFLG--IEKLHPFDSSKWGRICQFLSSEGFLDKNC 78 (223)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ivy~~~~~~h~~~--~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~ 78 (223)
|||+++.|++.+|.....+.++.+.+...|. ++|+++||++|+.|.+. .++.|||+|+|++.|+++|++.|+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~ 83 (421)
T 2pqp_A 4 SSPAAPASLSAPEPASQARVLSSSETPARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCE 83 (421)
T ss_dssp -----------------------------CCTTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSE
T ss_pred CCCCCccccCCCCCCccccccCCCCCCCCCCCCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCe
Confidence 7898999999999999999888888887784 89999999999999854 34689999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCHHHHHHHhcCCCc-cc-------------cc---cCCCcccCCCccccc-ccHHHHHHHhhHH
Q 027427 79 IVEPLEASKEDLLVVHSESYLKSLQSSPNV-SI-------------II---EVPPVALFPNCLVQR-KVLYPFRKQVGGT 140 (223)
Q Consensus 79 ~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~-~~-------------~~---e~~~~~~~~d~~~~~-~~~~~a~~a~Gg~ 140 (223)
+++|++|++++|++||+++||+.+...... .+ .. ......++.|+++++ .++++|++++|++
T Consensus 84 ~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~ 163 (421)
T 2pqp_A 84 CLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSV 163 (421)
T ss_dssp EECCCCCCHHHHTTTSCHHHHHHHHCCTTCSCCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHhcCCHHHHHhhhcchhhhhhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHH
Confidence 999999999999999999999865432100 00 00 001234567888874 8999999999999
Q ss_pred HHHHHHHhh----cCcEeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhcCCCE
Q 027427 141 ILAAKLAKE----RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRS 216 (223)
Q Consensus 141 l~aa~~~~~----~~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~V 216 (223)
+.|++.+++ ++||++|||| |||++++++|||+|||+||||++|+++++++||+|||||||||||||+|||+||+|
T Consensus 164 ~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~V 242 (421)
T 2pqp_A 164 TDLAFKVASRELKNGFAVVRPPG-HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSV 242 (421)
T ss_dssp HHHHHHHHTTSSSEEEECCSSCC-TTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTE
T ss_pred HHHHHHHHcCccccceeeCCCCC-CCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCE
Confidence 999999974 5799999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccC
Q 027427 217 CLYSGYV 223 (223)
Q Consensus 217 l~iSlH~ 223 (223)
||||+|+
T Consensus 243 l~~S~H~ 249 (421)
T 2pqp_A 243 LYISLHR 249 (421)
T ss_dssp EEEEEEE
T ss_pred EEEeccc
Confidence 9999995
No 2
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=2.9e-59 Score=423.66 Aligned_cols=182 Identities=21% Similarity=0.313 Sum_probs=168.1
Q ss_pred CceeEEeCcccccccCCCCCC----------------CCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCH
Q 027427 33 FKLPLIYSPDYDISFLGIEKL----------------HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96 (223)
Q Consensus 33 ~~~~ivy~~~~~~h~~~~~~~----------------Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~ 96 (223)
|+++++|||+|..|.++ .+ |||+|+|++.|.+.|++.|+++.+++++|++|++++|++||++
T Consensus 1 m~t~~~y~~~~~~h~~~--~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~ 78 (369)
T 1zz1_A 1 MAIGYVWNTLYGWVDTG--TGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSA 78 (369)
T ss_dssp -CEEEECCGGGGGCCCC--SSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCH
T ss_pred CeEEEEEchHHcccCCC--CcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccH
Confidence 57899999999999765 44 9999999999999999999999899999999999999999999
Q ss_pred HHHHHHhcCCC-ccccccCCCcccCC-CcccccccHHHHHHHhhHHHHHHHHHhh----cCcEeecCCCCCCCCCCCCCc
Q 027427 97 SYLKSLQSSPN-VSIIIEVPPVALFP-NCLVQRKVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSADEGGG 170 (223)
Q Consensus 97 ~Yv~~l~~~~~-~~~~~e~~~~~~~~-d~~~~~~~~~~a~~a~Gg~l~aa~~~~~----~~~a~~~~~G~HHA~~~~~~G 170 (223)
+||++|++.+. .. ...+++ ||++++++++++++++||++.|++.+++ ++||++|||| |||++++++|
T Consensus 79 ~Yv~~l~~~~~~~~------~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~G 151 (369)
T 1zz1_A 79 AHLENMKRVSNLPT------GGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMG 151 (369)
T ss_dssp HHHHHHHHHHHSTT------CEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBT
T ss_pred HHHHHHHHhCcccc------ceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCC
Confidence 99999998654 21 123566 9999999999999999999999999986 4689999999 9999999999
Q ss_pred ccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 171 FCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 171 FC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
||+|||+||||++|++++|++||+|||||||||||||+|||+||+|+|||+|+
T Consensus 152 FC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~ 204 (369)
T 1zz1_A 152 FCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQ 204 (369)
T ss_dssp TBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEE
T ss_pred chHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999996
No 3
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.6e-58 Score=417.57 Aligned_cols=188 Identities=25% Similarity=0.374 Sum_probs=168.6
Q ss_pred CCceeEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCcccc
Q 027427 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (223)
Q Consensus 32 ~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~ 111 (223)
+.++.++|||+|..|.++ ++|||+|+|++.|.++|++.|+++.+++++|++|++++|++||+++||++|++.+.....
T Consensus 2 ~~~~~~~y~~~~~~~~~g--~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~ 79 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYG--AGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQ 79 (376)
T ss_dssp CCCEEEECCTTTTCCCCC--TTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGG
T ss_pred CCeEEEEEChHHhCcCCC--CCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccch
Confidence 457999999999998754 789999999999999999999999999999999999999999999999999988754210
Q ss_pred ---ccCCCcccCCCcccccccHHHHHHHhhHHHHHHHHHhhc--CcEeecCCCCCCCCCCCCCcccccchHHHHHHHHHH
Q 027427 112 ---IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFV 186 (223)
Q Consensus 112 ---~e~~~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~~--~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~ 186 (223)
.+.....+++||++++++++++++++||++.|++.++++ ++|++++||+|||++++++|||+|||+||||++|++
T Consensus 80 ~~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~ 159 (376)
T 4a69_A 80 GFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLK 159 (376)
T ss_dssp GGHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTT
T ss_pred hhhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHH
Confidence 011123467899999999999999999999999988754 589999999999999999999999999999999997
Q ss_pred hcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 187 QLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
+ .+||+|||||||||||||+|||+||+|||||+|+
T Consensus 160 ~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~ 194 (376)
T 4a69_A 160 Y--HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHK 194 (376)
T ss_dssp T--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEE
T ss_pred h--CCcEEEEeccCCCCcchhhHhcCCCCEEEEeccc
Confidence 6 4999999999999999999999999999999995
No 4
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.6e-58 Score=413.29 Aligned_cols=188 Identities=27% Similarity=0.378 Sum_probs=169.2
Q ss_pred CCceeEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCcccc
Q 027427 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (223)
Q Consensus 32 ~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~ 111 (223)
+.++.++|||+|..|.++ ++|||+|+|+++|.++|++.|+++.+++++|++|++++|++||+++||++|++.+.....
T Consensus 2 ~~~v~~~y~~~~~~~~~g--~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~ 79 (367)
T 3max_A 2 KKKVCYYYDGDIGNYYYG--QGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMS 79 (367)
T ss_dssp CCCEEEECCGGGGGCCCC--TTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGG
T ss_pred CCeEEEEECccccCcCCC--CCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccc
Confidence 468999999999999765 789999999999999999999999999999999999999999999999999987754211
Q ss_pred ---ccCCCcccCCCcccccccHHHHHHHhhHHHHHHHHHhh--cCcEeecCCCCCCCCCCCCCcccccchHHHHHHHHHH
Q 027427 112 ---IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFV 186 (223)
Q Consensus 112 ---~e~~~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~--~~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~ 186 (223)
.+.....+++||++++++++++++++||++.|++.+++ .++|+++|||+|||++++++|||+|||+||||++|++
T Consensus 80 ~~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~ 159 (367)
T 3max_A 80 EYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLK 159 (367)
T ss_dssp GCHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTT
T ss_pred hhhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHH
Confidence 00111345789999999999999999999999998874 4689999999999999999999999999999999987
Q ss_pred hcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 187 QLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
. .+||+|||||||||||||+|||+||+|+|+|+|+
T Consensus 160 ~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~ 194 (367)
T 3max_A 160 Y--HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHK 194 (367)
T ss_dssp T--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEE
T ss_pred c--CCcEEEEecCCCCCchhhHHhcCCCCEEEEeccc
Confidence 5 4999999999999999999999999999999995
No 5
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=2.6e-58 Score=418.19 Aligned_cols=188 Identities=23% Similarity=0.329 Sum_probs=167.0
Q ss_pred CceeEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCccc--
Q 027427 33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSI-- 110 (223)
Q Consensus 33 ~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~-- 110 (223)
++++++|||+|..|.+ +++|||+|+|++.|+++|++.|+++.+++++|++|++++|++||+++||++|++.+....
T Consensus 2 ~~t~~vy~~~~~~h~~--g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~ 79 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRY--PKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVP 79 (375)
T ss_dssp CCEEEEECGGGGGSCC--CTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCC
T ss_pred ceEEEEECHHHcCCCC--CCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCC
Confidence 4689999999999865 478999999999999999999999999999999999999999999999999987653210
Q ss_pred cccCCCccc-CCCcccccccHHHHHHHhhHHHHHHHHHhhcCcEeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhcC
Q 027427 111 IIEVPPVAL-FPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN 189 (223)
Q Consensus 111 ~~e~~~~~~-~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~~~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~~ 189 (223)
..+.....+ ++||++++++++++++++||++.|++.+++++.|+++|||+|||++++++|||+|||+||||++|+++ |
T Consensus 80 ~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~-g 158 (375)
T 1c3p_A 80 KGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKK-G 158 (375)
T ss_dssp TTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHT-T
T ss_pred hHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCCceeecCcccceeeeccCCCceeecHHHHHHHHHHHh-C
Confidence 000011224 67999999999999999999999999999888788888888999999999999999999999999876 6
Q ss_pred CCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 190 ISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 190 ~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
.+||+|||||||||||||+|||+||+|+|||+|+
T Consensus 159 ~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~ 192 (375)
T 1c3p_A 159 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQ 192 (375)
T ss_dssp CCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEE
T ss_pred CCeEEEEecCCCCCHHHHHHhccCCCEEEEeccc
Confidence 7999999999999999999999999999999995
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=1.3e-57 Score=418.19 Aligned_cols=193 Identities=22% Similarity=0.279 Sum_probs=165.3
Q ss_pred CCCCceeEEeCcccccccCCCC--CCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCC
Q 027427 30 IPIFKLPLIYSPDYDISFLGIE--KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN 107 (223)
Q Consensus 30 ~~~~~~~ivy~~~~~~h~~~~~--~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~ 107 (223)
.|.++|++|||++|+.|.++++ ..|||+|+|++.|+++|++.|+.+.+++++|++|++++|++||+++||++++....
T Consensus 5 ~p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~ 84 (413)
T 2vqm_A 5 KPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPL 84 (413)
T ss_dssp -CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGG
T ss_pred CCCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCch
Confidence 4689999999999999987654 56999999999999999999999999999999999999999999999998876432
Q ss_pred cccc----------------ccCCCcccCCCccccc-ccHHHHHHHhhHHHHHHHHHhh----cCcEeecCCCCCCCCCC
Q 027427 108 VSII----------------IEVPPVALFPNCLVQR-KVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSAD 166 (223)
Q Consensus 108 ~~~~----------------~e~~~~~~~~d~~~~~-~~~~~a~~a~Gg~l~aa~~~~~----~~~a~~~~~G~HHA~~~ 166 (223)
.... .......++.|+.++. .++.++++++|+++.|++.++. ++||++|||| |||+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~ 163 (413)
T 2vqm_A 85 NRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEES 163 (413)
T ss_dssp GGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTT
T ss_pred hhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCC
Confidence 2100 0112234566777665 6889999999999999999975 4689999998 999999
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 167 EGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 167 ~~~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
+++|||+|||+||||+||+++++++||+|||||||||||||+|||+||+|+|+|+|+
T Consensus 164 ~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~ 220 (413)
T 2vqm_A 164 TPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHR 220 (413)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEE
T ss_pred CCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchh
Confidence 999999999999999999999999999999999999999999999999999999995
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=1.1e-56 Score=401.99 Aligned_cols=184 Identities=20% Similarity=0.224 Sum_probs=161.3
Q ss_pred eeEEeCcccccccCCCC------CCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCc
Q 027427 35 LPLIYSPDYDISFLGIE------KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (223)
Q Consensus 35 ~~ivy~~~~~~h~~~~~------~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~ 108 (223)
+.++|+|+|+.|..+.. ..|||+|+|++.|+++|++.|+. ++++|++|++++|++||+++||++|++.+..
T Consensus 1 m~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~ 77 (341)
T 3q9b_A 1 MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDR 77 (341)
T ss_dssp CEEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHH
T ss_pred CEEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 46899999999976521 25999999999999999999985 5789999999999999999999999876421
Q ss_pred c-----c---cccC------------------CCcccCCCcccccccHHHHHHHhhHHHHHHHHHhh---cCcEeecCCC
Q 027427 109 S-----I---IIEV------------------PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE---RGWAINVGGG 159 (223)
Q Consensus 109 ~-----~---~~e~------------------~~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~---~~~a~~~~~G 159 (223)
+ + ..+. ....+++||++++++|+++++++|+++.|++.+++ ++||++||||
T Consensus 78 ~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG 157 (341)
T 3q9b_A 78 WKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG 157 (341)
T ss_dssp HHHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC
T ss_pred hhhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC
Confidence 1 0 0000 01246789999999999999999999999999986 3699999999
Q ss_pred CCCCCCCCCCcccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 160 FHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 160 ~HHA~~~~~~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
|||++++++|||+|||+||||++|+++ |++||+|||||||||||||+|||+||+|||+|+|+
T Consensus 158 -HHA~~~~a~GFC~~NnvaiAa~~l~~~-g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~ 219 (341)
T 3q9b_A 158 -HHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHG 219 (341)
T ss_dssp -TTCBTTBBBTTBSSCHHHHHHHHHHHT-TCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEE
T ss_pred -CCCCCCCCCCccccCHHHHHHHHHHHc-CCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccC
Confidence 999999999999999999999999985 69999999999999999999999999999999995
No 8
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=1.1e-56 Score=407.26 Aligned_cols=190 Identities=26% Similarity=0.296 Sum_probs=165.3
Q ss_pred ccCCCCceeEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCC
Q 027427 28 FDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN 107 (223)
Q Consensus 28 ~~~~~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~ 107 (223)
...++.++.++|+|+|..|. .+|||+|+|+++|.++|++.|+++.+++++|++|++++|++||+++||++|++.+.
T Consensus 9 ~~~~~~~~~~~y~~~~~~~~----~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~ 84 (388)
T 3ew8_A 9 DSGQSLVPVYIYSPEYVSMC----DSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQ 84 (388)
T ss_dssp -----CCCEEECCHHHHHHH----TTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEEChHHhccC----CCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhcc
Confidence 35667889999999999873 46999999999999999999999999999999999999999999999999998654
Q ss_pred cccc--ccCCCcccCCCcccccccHHHHHHHhhHHHHHHHHHhhc--CcEeecCCCCCCCCCCCCCcccccchHHHHHHH
Q 027427 108 VSII--IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHY 183 (223)
Q Consensus 108 ~~~~--~e~~~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~~--~~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~ 183 (223)
.... .+.....++.||++++++++++++++||++.|++.++++ ++|+++|||+|||++++++|||+|||+||||++
T Consensus 85 ~~~~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~ 164 (388)
T 3ew8_A 85 EGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILR 164 (388)
T ss_dssp HC--------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHH
T ss_pred cccccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHH
Confidence 2211 011223456799999999999999999999999999865 589999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 184 AFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 184 l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
|++. .+||+|||||||||||||+|||+||+|||||+|+
T Consensus 165 l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~ 202 (388)
T 3ew8_A 165 LRRK--FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHK 202 (388)
T ss_dssp HTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEE
T ss_pred HHhc--CCeEEEEecCCCCChhHHHHhccCCCEEEEecCC
Confidence 9864 7999999999999999999999999999999995
No 9
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.5e-56 Score=403.34 Aligned_cols=182 Identities=19% Similarity=0.248 Sum_probs=159.9
Q ss_pred eeEEeCcccccccCCCC------CCCCCCchHHHHHHHHHHHCCCCCCceEecCCCCCHHHHhccCCHHHHHHHhcCCCc
Q 027427 35 LPLIYSPDYDISFLGIE------KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (223)
Q Consensus 35 ~~ivy~~~~~~h~~~~~------~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~ 108 (223)
+.++|||+|+.|..+.. ..|||+|+|++.|+++|++.|+ ++++|++|++++|++||+++||++|++.+..
T Consensus 22 M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~ 97 (362)
T 3men_A 22 MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHRE 97 (362)
T ss_dssp CEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 56999999999986521 3699999999999999999997 6899999999999999999999999876421
Q ss_pred cc------ccc-CC------------------CcccCCCcccccccHHHHHHHhhHHHHHHHHHhh---cCcEeecCCCC
Q 027427 109 SI------IIE-VP------------------PVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE---RGWAINVGGGF 160 (223)
Q Consensus 109 ~~------~~e-~~------------------~~~~~~d~~~~~~~~~~a~~a~Gg~l~aa~~~~~---~~~a~~~~~G~ 160 (223)
+. ..| ++ ...+++||++++++|++|++++|+++.|++.+++ ++||++||||
T Consensus 98 ~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG- 176 (362)
T 3men_A 98 WKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG- 176 (362)
T ss_dssp HHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred hhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-
Confidence 10 000 00 0235789999999999999999999999999985 3699999999
Q ss_pred CCCCCCCCCcccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhcCCCEEEEeccC
Q 027427 161 HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRSCLYSGYV 223 (223)
Q Consensus 161 HHA~~~~~~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSlH~ 223 (223)
|||++++++|||+|||+||||++|+++ .+||+|||||||||||||+|||+||+|+|+|+|+
T Consensus 177 HHA~~~~a~GFC~fNnvAiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~ 237 (362)
T 3men_A 177 HHARVDAAGGFCYLNNAAIAAQALRAR--HARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHG 237 (362)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEE
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHc--CCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecC
Confidence 999999999999999999999999987 6999999999999999999999999999999995
No 10
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=65.70 E-value=6.5 Score=32.03 Aligned_cols=23 Identities=9% Similarity=0.307 Sum_probs=16.4
Q ss_pred hcCCCeEEEEecCCcCCchhhHhhh
Q 027427 187 QLNISRVMIIDLDAHQGNGHEKDFS 211 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~if~ 211 (223)
+.| +||++||+|. +|+.+...+.
T Consensus 27 ~~G-~~VlliD~D~-q~~~~~~~~~ 49 (269)
T 1cp2_A 27 AMG-KTIMVVGCDP-KADSTRLLLG 49 (269)
T ss_dssp TTT-CCEEEEEECT-TSCSSHHHHT
T ss_pred HCC-CcEEEEcCCC-CCCHHHHhcC
Confidence 345 6999999995 5666666553
No 11
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=60.51 E-value=8.9 Score=31.76 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=15.5
Q ss_pred hcCCCeEEEEecCCcCCchhhHhh
Q 027427 187 QLNISRVMIIDLDAHQGNGHEKDF 210 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~if 210 (223)
+.| +||++||+|.. |+.+..++
T Consensus 28 ~~G-~rVlliD~D~q-~~~~~~~~ 49 (289)
T 2afh_E 28 EMG-KKVMIVGCDPK-ADSTRLIL 49 (289)
T ss_dssp HTT-CCEEEEEECSS-SCSSHHHH
T ss_pred HCC-CeEEEEecCCC-CCHHHHhc
Confidence 334 69999999974 55665554
No 12
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=59.13 E-value=8.6 Score=30.50 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.4
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
+||++||+|..+||
T Consensus 32 ~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 32 RKVLAVDGDLTMAN 45 (237)
T ss_dssp CCEEEEECCTTSCC
T ss_pred CeEEEEeCCCCCCC
Confidence 69999999998774
No 13
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=58.53 E-value=8.9 Score=33.34 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=17.0
Q ss_pred hcCCCeEEEEecCCcCCchhhHhh
Q 027427 187 QLNISRVMIIDLDAHQGNGHEKDF 210 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~if 210 (223)
+.| +||++||+|.. ||.+..++
T Consensus 28 ~~G-~rVLlID~D~q-~~~~~~l~ 49 (361)
T 3pg5_A 28 LQG-KRVLYVDCDPQ-CNATQLML 49 (361)
T ss_dssp HTT-CCEEEEECCTT-CTTHHHHS
T ss_pred hCC-CcEEEEEcCCC-CChhhhhc
Confidence 344 79999999977 77777664
No 14
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=58.48 E-value=8.9 Score=31.06 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=13.7
Q ss_pred hcCCCeEEEEecCCcCCc
Q 027427 187 QLNISRVMIIDLDAHQGN 204 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGn 204 (223)
+.| +||++||+|...||
T Consensus 29 ~~g-~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 29 QLG-HDVTIVDADITMAN 45 (263)
T ss_dssp HTT-CCEEEEECCCSSSS
T ss_pred hCC-CcEEEEECCCCCCC
Confidence 334 69999999998775
No 15
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=57.75 E-value=9.3 Score=30.69 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=14.6
Q ss_pred hcCCCeEEEEecCCcCCchh
Q 027427 187 QLNISRVMIIDLDAHQGNGH 206 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGT 206 (223)
+.| +||++||+|..+||=+
T Consensus 29 ~~g-~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 29 QKG-KKTVVIDFAIGLRNLD 47 (260)
T ss_dssp HTT-CCEEEEECCCSSCCHH
T ss_pred hCC-CcEEEEECCCCCCChh
Confidence 344 6999999999877644
No 16
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=57.51 E-value=10 Score=30.86 Aligned_cols=15 Identities=53% Similarity=0.975 Sum_probs=12.5
Q ss_pred CeEEEEecCCcCCchh
Q 027427 191 SRVMIIDLDAHQGNGH 206 (223)
Q Consensus 191 ~RV~IiD~DvHHGnGT 206 (223)
+||++||+|. +||-+
T Consensus 36 ~~VlliD~D~-~~~~~ 50 (257)
T 1wcv_1 36 KRVLLVDLDP-QGNAT 50 (257)
T ss_dssp CCEEEEECCT-TCHHH
T ss_pred CCEEEEECCC-CcCHH
Confidence 7999999998 57754
No 17
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=56.26 E-value=12 Score=29.75 Aligned_cols=18 Identities=17% Similarity=0.208 Sum_probs=14.7
Q ss_pred CeEEEEecCCcCCchhhH
Q 027427 191 SRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 191 ~RV~IiD~DvHHGnGTq~ 208 (223)
+||++||+|...||=+..
T Consensus 35 ~~VlliD~D~~~~~l~~~ 52 (245)
T 3ea0_A 35 IHVLAVDISLPFGDLDMY 52 (245)
T ss_dssp CCEEEEECCTTTCCGGGG
T ss_pred CCEEEEECCCCCCCHHHH
Confidence 799999999987775544
No 18
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=54.90 E-value=12 Score=31.02 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=15.9
Q ss_pred hcCCCeEEEEecCCcCCchhhH
Q 027427 187 QLNISRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~ 208 (223)
+.| +||++||+|..+|+-+..
T Consensus 31 ~~G-~~VlliD~D~~q~~l~~~ 51 (286)
T 2xj4_A 31 YGG-AKVAVIDLDLRQRTSARF 51 (286)
T ss_dssp HTT-CCEEEEECCTTTCHHHHH
T ss_pred HCC-CcEEEEECCCCCCCHHHH
Confidence 345 699999999988775543
No 19
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=54.76 E-value=10 Score=29.93 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=14.2
Q ss_pred HhcCCCeEEEEecCCcCCchh
Q 027427 186 VQLNISRVMIIDLDAHQGNGH 206 (223)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGnGT 206 (223)
.+.| +||++||+|.. ||=+
T Consensus 25 a~~g-~~VlliD~D~~-~~l~ 43 (254)
T 3kjh_A 25 ASDY-DKIYAVDGDPD-SCLG 43 (254)
T ss_dssp TTTC-SCEEEEEECTT-SCHH
T ss_pred HHCC-CeEEEEeCCCC-cChH
Confidence 3445 89999999995 6643
No 20
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=51.18 E-value=18 Score=30.12 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=14.6
Q ss_pred hcCCCeEEEEecCCcCCchhhH
Q 027427 187 QLNISRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~ 208 (223)
+.| +||++||+|. +||-+..
T Consensus 67 ~~G-~~VlliD~D~-~~~~~~~ 86 (307)
T 3end_A 67 ILG-KRVLQIGCDP-KHDSTFT 86 (307)
T ss_dssp HTT-CCEEEEEESS-SCCTTHH
T ss_pred HCC-CeEEEEeCCC-CCCHHHH
Confidence 345 6999999998 5665544
No 21
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.94 E-value=28 Score=26.55 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=13.4
Q ss_pred hcCCCeEEEEecCCcCCchhhH
Q 027427 187 QLNISRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~ 208 (223)
+.| +||++||+| .+|+-+..
T Consensus 28 ~~g-~~vlliD~D-~~~~~~~~ 47 (206)
T 4dzz_A 28 RSG-YNIAVVDTD-PQMSLTNW 47 (206)
T ss_dssp HTT-CCEEEEECC-TTCHHHHH
T ss_pred HCC-CeEEEEECC-CCCCHHHH
Confidence 344 699999999 44444443
No 22
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=46.60 E-value=16 Score=30.73 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=12.4
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
+||++||+|...|+
T Consensus 122 ~rVLLID~D~~~~~ 135 (286)
T 3la6_A 122 KRVLLIDCDMRKGY 135 (286)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CCEEEEeccCCCCC
Confidence 79999999998764
No 23
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=45.94 E-value=17 Score=29.47 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=14.5
Q ss_pred cCCCeEEEEecCCcCCchhhHh
Q 027427 188 LNISRVMIIDLDAHQGNGHEKD 209 (223)
Q Consensus 188 ~~~~RV~IiD~DvHHGnGTq~i 209 (223)
.| +||++||+|.. |+.+..+
T Consensus 54 ~g-~~VlliD~D~~-~~~~~~~ 73 (267)
T 3k9g_A 54 KN-NKVLLIDMDTQ-ASITSYF 73 (267)
T ss_dssp TT-SCEEEEEECTT-CHHHHHT
T ss_pred CC-CCEEEEECCCC-CCHHHHh
Confidence 35 79999999985 5555444
No 24
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=45.71 E-value=18 Score=29.79 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=14.5
Q ss_pred hcCCCeEEEEecCCcCCchhhH
Q 027427 187 QLNISRVMIIDLDAHQGNGHEK 208 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~ 208 (223)
+.| +||++||+|.. |+.|..
T Consensus 63 ~~G-~rVlliD~D~q-~~~~~~ 82 (298)
T 2oze_A 63 KLN-LKVLMIDKDLQ-ATLTKD 82 (298)
T ss_dssp HTT-CCEEEEEECTT-CHHHHH
T ss_pred hCC-CeEEEEeCCCC-CCHHHH
Confidence 345 69999999986 555443
No 25
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=43.96 E-value=20 Score=31.12 Aligned_cols=13 Identities=15% Similarity=0.603 Sum_probs=11.0
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
+||++||+| .+||
T Consensus 173 ~rVlliD~D-~~~~ 185 (373)
T 3fkq_A 173 KKVFYLNIE-QCGT 185 (373)
T ss_dssp CCEEEEECC-TTCC
T ss_pred CCEEEEECC-CCCC
Confidence 799999999 6664
No 26
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=43.85 E-value=40 Score=29.03 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=17.0
Q ss_pred cCCCeEEEEecCCcCCchhhHhhhcC
Q 027427 188 LNISRVMIIDLDAHQGNGHEKDFSSD 213 (223)
Q Consensus 188 ~~~~RV~IiD~DvHHGnGTq~if~~d 213 (223)
.| +||++||+|. .+ +....|..+
T Consensus 53 ~G-~rVLlvD~D~-~~-~l~~~l~~~ 75 (349)
T 3ug7_A 53 KG-LKVVIVSTDP-AH-SLRDIFEQE 75 (349)
T ss_dssp SS-CCEEEEECCT-TC-HHHHHHCSC
T ss_pred CC-CeEEEEeCCC-CC-CHHHHhCCC
Confidence 34 7999999999 43 666777654
No 27
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=42.70 E-value=21 Score=28.99 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=13.8
Q ss_pred hcCCCeEEEEecCCcCCch
Q 027427 187 QLNISRVMIIDLDAHQGNG 205 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnG 205 (223)
+.| +||++||+|...++=
T Consensus 45 ~~G-~~VlliD~D~~~~~l 62 (262)
T 2ph1_A 45 RQG-KKVGILDADFLGPSI 62 (262)
T ss_dssp HTT-CCEEEEECCSSCCHH
T ss_pred HCC-CeEEEEeCCCCCCCH
Confidence 335 699999999977653
No 28
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=41.94 E-value=27 Score=28.96 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=12.2
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
+||++||+|...++
T Consensus 112 ~rVLLID~D~~~~~ 125 (271)
T 3bfv_A 112 YKTLIVDGDMRKPT 125 (271)
T ss_dssp CCEEEEECCSSSCC
T ss_pred CeEEEEeCCCCCcc
Confidence 79999999988764
No 29
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=41.52 E-value=26 Score=29.47 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=12.9
Q ss_pred CeEEEEecCCcCCch
Q 027427 191 SRVMIIDLDAHQGNG 205 (223)
Q Consensus 191 ~RV~IiD~DvHHGnG 205 (223)
+||++||+|...|+=
T Consensus 134 ~rVLLID~D~r~~~l 148 (299)
T 3cio_A 134 QKVLFIDADLRRGYS 148 (299)
T ss_dssp CCEEEEECCTTTCCH
T ss_pred CcEEEEECCCCCccH
Confidence 799999999987653
No 30
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=41.37 E-value=12 Score=20.64 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=13.2
Q ss_pred CCCCCCCCCcHHHHhh
Q 027427 3 SSSSPSVTTDAETLKR 18 (223)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (223)
|-|+|.||-+||-+--
T Consensus 3 sksaptspcdqeikel 18 (31)
T 2wh0_Q 3 SKSAPTSPCDQEIKEL 18 (31)
T ss_pred cccCCCCchHHHHHHH
Confidence 6789999999998753
No 31
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=39.06 E-value=24 Score=30.14 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=13.9
Q ss_pred HHhcCCCeEEEEecCCcCCchh
Q 027427 185 FVQLNISRVMIIDLDAHQGNGH 206 (223)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGT 206 (223)
+.+.| +||++||+|- +||-|
T Consensus 72 LA~~G-kkVllID~Dp-q~~s~ 91 (314)
T 3fwy_A 72 FSILG-KRVLQIGCDP-KHDST 91 (314)
T ss_dssp HHHTT-CCEEEEEESS-SCCTT
T ss_pred HHHCC-CeEEEEecCC-CCccc
Confidence 34456 7999999997 34433
No 32
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=38.17 E-value=27 Score=27.44 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=13.9
Q ss_pred HhcCCCeEEEEecCCcCCchhh
Q 027427 186 VQLNISRVMIIDLDAHQGNGHE 207 (223)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGnGTq 207 (223)
.+.| ||++||+|.. |+.+.
T Consensus 26 a~~g--~VlliD~D~q-~~~~~ 44 (209)
T 3cwq_A 26 ALQG--ETLLIDGDPN-RSATG 44 (209)
T ss_dssp HTTS--CEEEEEECTT-CHHHH
T ss_pred HhcC--CEEEEECCCC-CCHHH
Confidence 3456 9999999975 56554
No 33
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=38.02 E-value=27 Score=30.37 Aligned_cols=14 Identities=43% Similarity=0.805 Sum_probs=11.9
Q ss_pred CeEEEEecCCcCCch
Q 027427 191 SRVMIIDLDAHQGNG 205 (223)
Q Consensus 191 ~RV~IiD~DvHHGnG 205 (223)
+||++||+|. +||-
T Consensus 144 ~rVlliD~D~-q~~l 157 (398)
T 3ez2_A 144 LRILVIDLDP-QSSA 157 (398)
T ss_dssp CCEEEEEECT-TCHH
T ss_pred CeEEEEeCCC-CCCh
Confidence 7999999999 6763
No 34
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=37.48 E-value=28 Score=29.60 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=14.6
Q ss_pred CeEEEEecCCcCCchhhHhhhc
Q 027427 191 SRVMIIDLDAHQGNGHEKDFSS 212 (223)
Q Consensus 191 ~RV~IiD~DvHHGnGTq~if~~ 212 (223)
+||++||.|. .+ .....|..
T Consensus 43 ~rVLlvD~D~-~~-~l~~~l~~ 62 (324)
T 3zq6_A 43 KKTLVISTDP-AH-SLSDSLER 62 (324)
T ss_dssp CCEEEEECCS-SC-CHHHHHTS
T ss_pred CcEEEEeCCC-Cc-CHHHHhCC
Confidence 7999999999 44 44555543
No 35
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=34.45 E-value=15 Score=31.44 Aligned_cols=41 Identities=5% Similarity=0.097 Sum_probs=33.3
Q ss_pred ccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhc
Q 027427 171 FCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212 (223)
Q Consensus 171 FC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~ 212 (223)
++..+.+..+++|+.++ |.+||+||.-|-=-|.|..+.|.+
T Consensus 104 ~~~~~~~~~~a~~a~~~-g~k~vail~~~~~yG~~~~~~F~~ 144 (325)
T 2h4a_A 104 LSPEDEAESAANKMWND-GVRNPLVAMPQNDLGQRVGNAFNV 144 (325)
T ss_dssp CCHHHHHHHHHHHHHHT-TCCSCEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc-CCCeEEEEEcCCcHHHHHHHHHHH
Confidence 44455688889999865 899999999888888888888864
No 36
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=33.96 E-value=24 Score=30.80 Aligned_cols=13 Identities=46% Similarity=0.856 Sum_probs=11.4
Q ss_pred CeEEEEecCCcCCc
Q 027427 191 SRVMIIDLDAHQGN 204 (223)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (223)
+||++||+|. +||
T Consensus 147 ~rVlliD~D~-~~~ 159 (403)
T 3ez9_A 147 LRILVIDLDP-QAS 159 (403)
T ss_dssp CCEEEEEESS-SSG
T ss_pred CeEEEEeCCC-CCC
Confidence 7999999999 565
No 37
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=30.33 E-value=39 Score=29.24 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=15.7
Q ss_pred hcCCCeEEEEecCCcCCchhhHhhhc
Q 027427 187 QLNISRVMIIDLDAHQGNGHEKDFSS 212 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~if~~ 212 (223)
+.| +||++||.|.. +| ...+|.-
T Consensus 46 ~~G-~rVLLvD~D~~-~~-l~~~lg~ 68 (354)
T 2woj_A 46 QPN-KQFLLISTDPA-HN-LSDAFGE 68 (354)
T ss_dssp CTT-SCEEEEECCSS-CC-HHHHHTS
T ss_pred cCC-CeEEEEECCCC-CC-HHHHhCC
Confidence 344 79999999994 43 4455554
No 38
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=28.41 E-value=45 Score=28.40 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=14.9
Q ss_pred hcCCCeEEEEecCCcCCchhhHhhh
Q 027427 187 QLNISRVMIIDLDAHQGNGHEKDFS 211 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~if~ 211 (223)
+.| +||++||.|..+ .....|.
T Consensus 45 ~~G-~rVllvD~D~~~--~l~~~l~ 66 (329)
T 2woo_A 45 KVR-SSVLLISTDPAH--NLSDAFG 66 (329)
T ss_dssp TSS-SCEEEEECCTTC--HHHHHHS
T ss_pred HCC-CeEEEEECCCCc--CHHHHhC
Confidence 345 799999999973 3344443
No 39
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=26.49 E-value=1e+02 Score=26.36 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=15.8
Q ss_pred hcCCCeEEEEecCCcCCchhhHhhhc
Q 027427 187 QLNISRVMIIDLDAHQGNGHEKDFSS 212 (223)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~if~~ 212 (223)
+.| +||++||+|-- .+....|..
T Consensus 42 ~~g-~~vllid~D~~--~~l~~~l~~ 64 (334)
T 3iqw_A 42 KVR-RSVLLLSTDPA--HNLSDAFSQ 64 (334)
T ss_dssp TSS-SCEEEEECCSS--CHHHHHHTS
T ss_pred hCC-CcEEEEECCCC--CChhHHhcc
Confidence 444 79999999943 356666643
No 40
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=21.49 E-value=35 Score=28.37 Aligned_cols=41 Identities=5% Similarity=0.097 Sum_probs=32.4
Q ss_pred ccccchHHHHHHHHHHhcCCCeEEEEecCCcCCchhhHhhhc
Q 027427 171 FCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212 (223)
Q Consensus 171 FC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~ 212 (223)
++.-+.+...++|+.++ |.+||+||.-|-=-|.|..+.|.+
T Consensus 106 ~~~~~~~~~~a~~~~~~-g~k~~~ii~~~~~yg~~~~~~f~~ 146 (327)
T 3ckm_A 106 LSPEDEAESAANKMWND-GVRNPLVAMPQNDLGQRVGNAFNV 146 (327)
T ss_dssp CCHHHHHHHHHHHHHHT-TCCSCEEEEESSHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHhc-CCeeEEEEecCChHHHHHHHHHHH
Confidence 44445567778888765 789999999999999998888864
No 41
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=20.46 E-value=91 Score=26.93 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=14.7
Q ss_pred CeEEEEecCCcCCchhhHhhhc
Q 027427 191 SRVMIIDLDAHQGNGHEKDFSS 212 (223)
Q Consensus 191 ~RV~IiD~DvHHGnGTq~if~~ 212 (223)
+||++||+|- ..+....|..
T Consensus 49 ~~vllid~D~--~~~l~~~~~~ 68 (348)
T 3io3_A 49 EQFLLISTDP--AHNLSDAFCQ 68 (348)
T ss_dssp SCEEEEECCS--SCHHHHHHTS
T ss_pred CeEEEEECCC--CCChHHHhcc
Confidence 7999999993 3456666663
Done!