RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 027427
         (223 letters)



>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
           63363]}
          Length = 372

 Score = 86.9 bits (214), Expect = 9e-21
 Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 6/187 (3%)

Query: 34  KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
           K+ LI + DY          HP    +   + +F  +   +D+  +++   A+KE+LL+ 
Sbjct: 2   KVKLIGTLDYGKYRYPKN--HPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLF 59

Query: 94  HSESYLKSLQSSPNVSIIIEVPPVALFP---NCLVQRKVLYPFRKQVGGTILAAKLAKER 150
           H+E Y+ +L  +     + +              V   +        G T+ A +   + 
Sbjct: 60  HTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKG 119

Query: 151 GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
             A N  GG HH       GFC   + ++ I Y   +    R++ IDLDAH  +G ++ F
Sbjct: 120 NVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLR-KKGFKRILYIDLDAHHCDGVQEAF 178

Query: 211 SSDSRSC 217
               +  
Sbjct: 179 YDTDQVF 185


>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 364

 Score = 78.7 bits (193), Expect = 7e-18
 Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 14/194 (7%)

Query: 30  IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
           +P++    IYSP+Y    + +         +   +   + +     +  IV+P  AS E+
Sbjct: 2   VPVY----IYSPEY----VSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEE 53

Query: 90  LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK-- 145
           +   H+++YL+ LQ  S        +     L  +C     +        G TI AA+  
Sbjct: 54  MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCL 113

Query: 146 LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205
           +      AIN  GG+HH   DE  GFC   D  L I     +    R++ +DLD H G+G
Sbjct: 114 IDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDG 171

Query: 206 HEKDFSSDSRSCLY 219
            E  FS  S+    
Sbjct: 172 VEDAFSFTSKVMTV 185


>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 73.8 bits (180), Expect = 5e-16
 Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 23/206 (11%)

Query: 37  LIYSPDYD--ISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVH 94
           LIY           G    HP  + +   I   L   G   +   +   +AS E+L  VH
Sbjct: 8   LIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVH 67

Query: 95  SESYLKSLQSSP-----------------NVSIIIEVPPVALFPNCLVQRKVLYPFRKQV 137
           SE ++    ++P                  + +++    V +  + +          +  
Sbjct: 68  SERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWA 127

Query: 138 GGTILAAKLAKERG----WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
            G++                  V    HH       GFC +  +++       Q   S++
Sbjct: 128 AGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKI 187

Query: 194 MIIDLDAHQGNGHEKDFSSDSRSCLY 219
           +I+D D H GNG ++ F  D      
Sbjct: 188 LIVDWDVHHGNGTQQTFYQDPSVLYI 213


>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
           amalonaticus [TaxId: 35703]}
          Length = 251

 Score = 28.4 bits (63), Expect = 0.60
 Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 7/47 (14%)

Query: 136 QVGG---TILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISL 179
            +GG    + A     + G     G        +          ++L
Sbjct: 174 DLGGIHNIVDAVLYCNKHGMEAYQG----GTCNETEISARTCVHVAL 216


>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
           tetanomorphum [TaxId: 1553]}
          Length = 253

 Score = 26.9 bits (59), Expect = 1.7
 Identities = 6/43 (13%), Positives = 9/43 (20%), Gaps = 4/43 (9%)

Query: 137 VGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISL 179
           V     A    K  G     G        +         +I +
Sbjct: 178 VNNIADAIMYCKANGMGAYCG----GTCNETNRSAEVTTNIGM 216


>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
           isomerase (RpiA), catalytic domain {Haemophilus
           influenzae [TaxId: 727]}
          Length = 147

 Score = 26.7 bits (58), Expect = 1.7
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 41  PDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLK 100
              DI   G ++++P        + +   +    +K         +K+ + +V S   + 
Sbjct: 74  SSLDIYVDGADEINPQK-----MMIKGGGAALTREKIVA----ALAKKFICIVDSSKQVD 124

Query: 101 SLQSSPNVSIIIEVPPVAL 119
            L +     ++I   P   
Sbjct: 125 VLFALRGADVVIVGTPEGA 143


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 25.5 bits (55), Expect = 6.9
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 16/83 (19%)

Query: 32  IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCI---VEPLEASKE 88
           + KL  I+   +DI F  +E                LSS  + +K      +  L  S  
Sbjct: 51  VCKLLFIFLLGHDIDFGHME------------AVNLLSSNRYTEKQIGYLFISVLVNSNS 98

Query: 89  DLLVVHSESYLKSLQSSPNVSII 111
           +L+ + + +    L  S N + +
Sbjct: 99  ELIRLINNAIKNDLA-SRNPTFM 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 842,296
Number of extensions: 38902
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 8
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)