Query 027429
Match_columns 223
No_of_seqs 230 out of 2176
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 99.9 1.3E-22 4.3E-27 182.0 4.3 147 43-193 22-191 (329)
2 2yua_A Williams-beuren syndrom 99.8 1.6E-21 5.6E-26 146.2 7.0 73 43-115 11-85 (99)
3 2ej7_A HCG3 gene; HCG3 protein 99.8 3.3E-21 1.1E-25 139.4 7.6 70 45-114 5-77 (82)
4 1wjz_A 1700030A21RIK protein; 99.8 1.8E-21 6.1E-26 144.2 6.1 72 44-115 11-90 (94)
5 2ctr_A DNAJ homolog subfamily 99.8 4.3E-21 1.5E-25 140.9 7.8 71 46-116 4-75 (88)
6 2dmx_A DNAJ homolog subfamily 99.8 4.2E-21 1.4E-25 141.9 7.7 72 45-116 5-79 (92)
7 2dn9_A DNAJ homolog subfamily 99.8 4.4E-21 1.5E-25 137.8 7.5 69 46-114 4-74 (79)
8 2ctp_A DNAJ homolog subfamily 99.8 4E-21 1.4E-25 137.8 6.6 70 46-115 4-74 (78)
9 1hdj_A Human HSP40, HDJ-1; mol 99.8 7.3E-21 2.5E-25 136.1 7.2 67 49-115 3-70 (77)
10 2cug_A Mkiaa0962 protein; DNAJ 99.8 1.1E-20 3.8E-25 138.7 8.3 71 45-115 13-84 (88)
11 2och_A Hypothetical protein DN 99.8 1.1E-20 3.7E-25 134.0 6.6 67 46-113 5-71 (73)
12 2o37_A Protein SIS1; HSP40, J- 99.8 9.5E-21 3.2E-25 140.2 6.3 69 46-115 5-73 (92)
13 2lgw_A DNAJ homolog subfamily 99.8 2.4E-20 8.3E-25 140.0 6.6 68 49-116 2-72 (99)
14 2ctq_A DNAJ homolog subfamily 99.8 5.8E-20 2E-24 140.7 6.9 70 45-114 16-87 (112)
15 2ctw_A DNAJ homolog subfamily 99.8 1.2E-19 4E-24 138.4 7.6 70 45-114 13-84 (109)
16 2l6l_A DNAJ homolog subfamily 99.8 4.4E-20 1.5E-24 148.7 4.9 70 45-114 6-83 (155)
17 1bq0_A DNAJ, HSP40; chaperone, 99.8 7.2E-20 2.5E-24 138.1 4.3 69 48-116 2-72 (103)
18 3bvo_A CO-chaperone protein HS 99.8 4.9E-19 1.7E-23 149.3 7.8 83 32-114 26-117 (207)
19 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 4.4E-19 1.5E-23 135.0 5.2 69 46-114 12-86 (109)
20 2ys8_A RAB-related GTP-binding 99.7 1.1E-18 3.7E-23 128.8 5.9 62 47-108 25-87 (90)
21 3apq_A DNAJ homolog subfamily 99.7 3.9E-18 1.3E-22 141.6 6.9 68 49-116 2-71 (210)
22 1gh6_A Large T antigen; tumor 99.7 1.3E-18 4.5E-23 133.9 1.6 64 48-113 7-72 (114)
23 1iur_A KIAA0730 protein; DNAJ 99.7 3.8E-18 1.3E-22 125.6 3.3 66 43-108 10-78 (88)
24 3hho_A CO-chaperone protein HS 99.7 1E-17 3.5E-22 137.6 5.6 67 48-114 3-78 (174)
25 1faf_A Large T antigen; J doma 99.7 1.2E-17 4.2E-22 120.4 3.8 61 48-110 10-72 (79)
26 1fpo_A HSC20, chaperone protei 99.7 2.1E-17 7.1E-22 135.5 4.9 66 49-114 1-75 (171)
27 2pf4_E Small T antigen; PP2A, 99.7 4.6E-18 1.6E-22 139.6 1.0 65 48-114 10-76 (174)
28 2guz_A Mitochondrial import in 99.7 3.4E-17 1.2E-21 115.6 4.7 63 43-107 8-71 (71)
29 3uo3_A J-type CO-chaperone JAC 99.7 5.7E-17 2E-21 134.0 5.0 67 46-113 8-81 (181)
30 1n4c_A Auxilin; four helix bun 99.6 6.6E-17 2.3E-21 133.5 3.6 61 49-109 117-182 (182)
31 2qwo_B Putative tyrosine-prote 99.6 1.7E-16 5.7E-21 117.6 3.4 54 49-102 33-91 (92)
32 3ag7_A Putative uncharacterize 99.6 1.9E-16 6.6E-21 120.2 2.3 57 48-105 40-105 (106)
33 3apo_A DNAJ homolog subfamily 99.6 4.1E-16 1.4E-20 152.0 1.6 72 45-116 17-90 (780)
34 2y4t_A DNAJ homolog subfamily 99.0 1.1E-10 3.9E-15 102.9 5.2 64 48-111 381-449 (450)
35 2guz_B Mitochondrial import in 99.0 2.6E-10 9E-15 79.0 4.1 53 48-102 3-58 (65)
36 2pzi_A Probable serine/threoni 89.7 0.21 7.1E-06 47.5 3.6 46 48-99 628-675 (681)
37 1dwl_A Ferredoxin I; electron 79.4 0.38 1.3E-05 30.1 -0.0 23 143-165 3-25 (59)
38 1iqz_A Ferredoxin; iron-sulfer 77.5 0.54 1.9E-05 32.0 0.4 26 142-167 4-29 (81)
39 1dax_A Ferredoxin I; electron 73.3 0.43 1.5E-05 30.7 -1.0 55 142-198 4-63 (64)
40 1c3g_A Heat shock protein 40; 72.9 1.7 5.7E-05 34.5 2.2 38 156-193 2-46 (170)
41 2q2g_A HSP40 protein, heat sho 72.4 1.8 6.3E-05 34.5 2.3 38 156-193 5-52 (180)
42 1nlt_A Protein YDJ1, mitochond 69.9 1.2 4E-05 37.6 0.6 65 155-223 12-83 (248)
43 3agx_A DNAJ homolog subfamily 58.9 3.8 0.00013 32.7 1.7 38 156-193 4-53 (181)
44 3i38_A Putative chaperone DNAJ 38.9 17 0.00059 26.4 2.4 36 156-193 13-48 (109)
45 1xer_A Ferredoxin; electron tr 37.9 5.9 0.0002 27.7 -0.3 27 141-167 37-64 (103)
46 2ctt_A DNAJ homolog subfamily 35.2 8.7 0.0003 27.6 0.2 22 157-178 4-25 (104)
47 4a3n_A Transcription factor SO 34.1 48 0.0017 21.3 3.9 41 67-110 14-54 (71)
48 2d7l_A WD repeat and HMG-box D 33.3 33 0.0011 23.5 3.0 44 67-112 17-60 (81)
49 3f27_D Transcription factor SO 26.7 78 0.0027 21.0 4.0 42 67-111 18-59 (83)
50 1qqr_A Streptokinase domain B; 26.6 33 0.0011 26.3 2.2 32 50-81 33-64 (138)
51 1jb0_C Photosystem I iron-sulf 26.3 16 0.00055 23.8 0.3 58 143-201 4-69 (80)
52 1i11_A Transcription factor SO 26.3 81 0.0028 20.9 4.0 42 67-111 16-57 (81)
53 1sj1_A Ferredoxin; thermostabi 25.4 11 0.00039 23.5 -0.6 25 142-166 4-28 (66)
54 1xao_A YDJ1, mitochondrial pro 25.2 53 0.0018 24.1 3.1 36 156-192 8-43 (121)
55 1hme_A High mobility group pro 25.1 1.4E+02 0.0047 19.4 5.0 42 67-111 18-59 (77)
56 2crj_A SWI/SNF-related matrix- 24.7 1E+02 0.0034 21.1 4.4 42 67-111 19-60 (92)
57 3nm9_A HMG-D, high mobility gr 24.0 1.3E+02 0.0044 19.5 4.6 39 67-111 15-53 (73)
58 1hry_A Human SRY; DNA, DNA-bin 23.6 89 0.0031 20.3 3.8 42 67-111 16-57 (76)
59 1rof_A Ferredoxin; electron tr 23.6 14 0.00048 22.5 -0.4 25 142-166 3-27 (60)
60 1wz6_A HMG-box transcription f 22.4 95 0.0033 20.6 3.8 42 67-111 19-60 (82)
61 1gte_A Dihydropyrimidine dehyd 22.4 20 0.00069 35.8 0.3 54 142-201 946-1009(1025)
62 2cs1_A PMS1 protein homolog 1; 21.9 89 0.003 21.4 3.6 42 67-111 19-60 (92)
63 1wgf_A Upstream binding factor 21.4 87 0.003 21.4 3.5 43 67-112 32-74 (90)
64 1ckt_A High mobility group 1 p 21.2 1.7E+02 0.0057 18.6 4.9 43 68-111 14-56 (71)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.86 E-value=1.3e-22 Score=181.99 Aligned_cols=147 Identities=26% Similarity=0.365 Sum_probs=32.2
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chhHHHHHHHHHHHHhhcccchhhhhhhhcccc-ccc
Q 027429 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR-FHF 120 (223)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~-~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~~~-~~~ 120 (223)
+..+..+|||+||||+++|+.+|||+|||+|+++||||++++ .++++|++|++||++|+||.+|+.||+.+.... .++
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~ 101 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGF 101 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCc
Confidence 445667899999999999999999999999999999999874 477899999999999999999999998743211 111
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCccccccccc--------cCCcceeeeeeeEeeecccCceEEEeeeC------CC----
Q 027429 121 GTNAS-AGFSRSSWKGPPRPEALFVDENACI--------GCRECVHHASNTFVMDEATGCARVKVQYG------DS---- 181 (223)
Q Consensus 121 ~~~~~-~~~~~~~~~g~~~~~~~f~~e~~~i--------gc~~c~~~a~~t~~~ee~~~g~~~~~q~g------~~---- 181 (223)
+.++. .+.+|. + ....++|...+... .-+.-++...++++++|++.|..+.+.+. .+
T Consensus 102 ~~~~~~~~~~f~---~-~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~ 177 (329)
T 3lz8_A 102 GRQRQTHEQSYS---Q-QDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIES 177 (329)
T ss_dssp ---------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCE
T ss_pred ccccccccCCcC---C-CchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEE
Confidence 11100 011111 0 01122232211110 11234788999999999999988887764 11
Q ss_pred --CceEEEecCCCc
Q 027429 182 --DQNIEVKIPLNR 193 (223)
Q Consensus 182 --~~~i~~aiP~~~ 193 (223)
...+++.||+|.
T Consensus 178 ~~~~~l~V~IP~Gv 191 (329)
T 3lz8_A 178 ETPKTLNVKIPAGV 191 (329)
T ss_dssp EEEEEEEEEECTTC
T ss_pred ecceEEEEeCCCCC
Confidence 246788889997
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=146.21 Aligned_cols=73 Identities=32% Similarity=0.483 Sum_probs=65.7
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chhHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 027429 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (223)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~--~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~ 115 (223)
...+...+||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus 11 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 11 DCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 345667899999999999999999999999999999999863 4678999999999999999999999987643
No 3
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=139.43 Aligned_cols=70 Identities=37% Similarity=0.536 Sum_probs=63.4
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chhHHHHHHHHHHHHhhcccchhhhhhhhc
Q 027429 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (223)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~---~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~ 114 (223)
.....|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+.
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 3456899999999999999999999999999999999875 356799999999999999999999998753
No 4
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.84 E-value=1.8e-21 Score=144.19 Aligned_cols=72 Identities=29% Similarity=0.528 Sum_probs=64.8
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------chhHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 027429 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--------KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (223)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~--------~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~ 115 (223)
..+...|||+||||+++++.+|||+|||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 34567899999999999999999999999999999999862 3568999999999999999999999988653
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=140.89 Aligned_cols=71 Identities=34% Similarity=0.552 Sum_probs=64.5
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hhHHHHHHHHHHHHhhcccchhhhhhhhccc
Q 027429 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (223)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~~-a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~~ 116 (223)
....+||+||||+++++.++||++||++++++|||+++.+ +.+.|++|++||++|+||.+|..||..+...
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 3468999999999999999999999999999999999853 6789999999999999999999999886543
No 6
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=141.93 Aligned_cols=72 Identities=39% Similarity=0.596 Sum_probs=64.7
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chhHHHHHHHHHHHHhhcccchhhhhhhhccc
Q 027429 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (223)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~---~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~~ 116 (223)
.....|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+...
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 3456899999999999999999999999999999999875 35789999999999999999999999886543
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=137.81 Aligned_cols=69 Identities=45% Similarity=0.652 Sum_probs=63.3
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chhHHHHHHHHHHHHhhcccchhhhhhhhc
Q 027429 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (223)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~--~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~ 114 (223)
+...|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+.
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 456899999999999999999999999999999999873 467899999999999999999999998753
No 8
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4e-21 Score=137.83 Aligned_cols=70 Identities=37% Similarity=0.581 Sum_probs=63.9
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chhHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 027429 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (223)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~-~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~ 115 (223)
+...|||+||||+++++.++||++|+++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 456899999999999999999999999999999999875 3678999999999999999999999987543
No 9
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.83 E-value=7.3e-21 Score=136.12 Aligned_cols=67 Identities=36% Similarity=0.549 Sum_probs=62.2
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chhHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 027429 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (223)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~-~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~ 115 (223)
.|||+||||+++++.++||++|+++++++|||+++. .+.+.|+.|++||++|+||.+|..||..+..
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE 70 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence 689999999999999999999999999999999874 4678999999999999999999999987543
No 10
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.1e-20 Score=138.68 Aligned_cols=71 Identities=30% Similarity=0.532 Sum_probs=64.6
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chhHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 027429 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (223)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~-~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~ 115 (223)
.....|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 3456899999999999999999999999999999999874 4678999999999999999999999987543
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.82 E-value=1.1e-20 Score=134.01 Aligned_cols=67 Identities=37% Similarity=0.616 Sum_probs=61.5
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhhhh
Q 027429 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (223)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~~~ 113 (223)
....+||+||||+++++.++||++|+++++++|||+++.. .+.|++|++||++|+||.+|..||..+
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4568999999999999999999999999999999998753 688999999999999999999999864
No 12
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.5e-21 Score=140.24 Aligned_cols=69 Identities=39% Similarity=0.536 Sum_probs=63.1
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 027429 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (223)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~ 115 (223)
....|||+||||+++++.++||++||++++++|||+++.. .+.|++|++||++|+||.+|..||..+..
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-TEKFKEISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence 4568999999999999999999999999999999998654 57999999999999999999999987643
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=140.04 Aligned_cols=68 Identities=32% Similarity=0.486 Sum_probs=62.2
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hhHHHHHHHHHHHHhhcccchhhhhhhhccc
Q 027429 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (223)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~~---a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~~ 116 (223)
.|||+||||+++++.++||++||++++++|||+++.. +.+.|++|++||++|+||.+|..||..+...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 6899999999999999999999999999999998753 5689999999999999999999999986543
No 14
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.8e-20 Score=140.71 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=64.2
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chhHHHHHHHHHHHHhhcccchhhhhhhhc
Q 027429 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (223)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~--~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~ 114 (223)
.....|||+||||+++++.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+.
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 3456899999999999999999999999999999999873 478899999999999999999999999864
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.2e-19 Score=138.43 Aligned_cols=70 Identities=30% Similarity=0.489 Sum_probs=63.6
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chhHHHHHHHHHHHHhhcccchhhhhhhhc
Q 027429 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (223)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~--~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~ 114 (223)
.....+||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 3446899999999999999999999999999999999874 367899999999999999999999998753
No 16
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-20 Score=148.68 Aligned_cols=70 Identities=29% Similarity=0.528 Sum_probs=63.4
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------hhHHHHHHHHHHHHhhcccchhhhhhhhc
Q 027429 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (223)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~~--------a~~~f~~I~eAY~iL~dp~~R~~YD~~~~ 114 (223)
.+...|||+||||+++++.++||+|||++++++|||+++.. +.+.|++|++||++|+||.+|+.||..+.
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34568999999999999999999999999999999998743 35789999999999999999999998764
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.78 E-value=7.2e-20 Score=138.08 Aligned_cols=69 Identities=39% Similarity=0.623 Sum_probs=63.3
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chhHHHHHHHHHHHHhhcccchhhhhhhhccc
Q 027429 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (223)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~--~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~~ 116 (223)
..|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+...
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence 3789999999999999999999999999999999873 46789999999999999999999999987544
No 18
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=149.26 Aligned_cols=83 Identities=25% Similarity=0.458 Sum_probs=70.6
Q ss_pred ccceeccCCCCCCCCCccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hhHHHHHHHHHHHHhhc
Q 027429 32 SVIRCCNGRAGERASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMR 102 (223)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~--as~~eIK~ayr~l~~~~HPDk~~~~-------a~~~f~~I~eAY~iL~d 102 (223)
..++|.++..........|||+||||+++ ++.++||++||++++++|||+++.. +.+.|+.||+||++|+|
T Consensus 26 ~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsd 105 (207)
T 3bvo_A 26 DRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105 (207)
T ss_dssp CCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44678777765555667899999999987 7999999999999999999998742 34678999999999999
Q ss_pred ccchhhhhhhhc
Q 027429 103 GDLRKDYDASIG 114 (223)
Q Consensus 103 p~~R~~YD~~~~ 114 (223)
|.+|..||..+.
T Consensus 106 p~~R~~Yd~~l~ 117 (207)
T 3bvo_A 106 PLSRGLYLLKLH 117 (207)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999997653
No 19
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.76 E-value=4.4e-19 Score=134.97 Aligned_cols=69 Identities=29% Similarity=0.500 Sum_probs=63.1
Q ss_pred CCccCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-----chhHHHHHHHHHHHHhhcccchhhhhhhhc
Q 027429 46 SKKKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQ-----KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (223)
Q Consensus 46 ~~~~d~Y~iLgv~~~a-s~~eIK~ayr~l~~~~HPDk~~~-----~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~ 114 (223)
....|||+||||++++ +.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+.
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 4468999999999999 99999999999999999999874 256899999999999999999999999864
No 20
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=128.75 Aligned_cols=62 Identities=26% Similarity=0.367 Sum_probs=57.3
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chhHHHHHHHHHHHHhhcccchhh
Q 027429 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKD 108 (223)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~-~a~~~f~~I~eAY~iL~dp~~R~~ 108 (223)
...|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 45899999999999999999999999999999999974 477899999999999999998874
No 21
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.72 E-value=3.9e-18 Score=141.57 Aligned_cols=68 Identities=44% Similarity=0.668 Sum_probs=62.6
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchhHHHHHHHHHHHHhhcccchhhhhhhhccc
Q 027429 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG--QKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (223)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~--~~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~~ 116 (223)
+|||+||||+++|+.++||+|||++++++|||+++ +.+.+.|++|++||++|+||.+|..||..+...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 71 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 71 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence 68999999999999999999999999999999986 346789999999999999999999999987543
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.71 E-value=1.3e-18 Score=133.85 Aligned_cols=64 Identities=28% Similarity=0.365 Sum_probs=59.4
Q ss_pred ccCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhhhh
Q 027429 48 KKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (223)
Q Consensus 48 ~~d~Y~iLgv~~~as~--~eIK~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~~~ 113 (223)
..++|+||||+++++. ++||+|||++++++|||+++. .++|++|++||++|+||.+|+.||..+
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 4689999999999998 999999999999999999875 578999999999999999999999653
No 23
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.70 E-value=3.8e-18 Score=125.57 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=59.0
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hhHHHHHHHHHHHHhhcccchhh
Q 027429 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKD 108 (223)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~~---a~~~f~~I~eAY~iL~dp~~R~~ 108 (223)
.......++|+||||+++|+.+|||+|||+++++||||+++.. +.+.|++|++||++|+|...|..
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4456678999999999999999999999999999999999863 67899999999999999877743
No 24
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.70 E-value=1e-17 Score=137.57 Aligned_cols=67 Identities=30% Similarity=0.559 Sum_probs=60.5
Q ss_pred ccCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCc-------hhHHHHHHHHHHHHhhcccchhhhhhhhc
Q 027429 48 KKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (223)
Q Consensus 48 ~~d~Y~iLgv~~~as--~~eIK~ayr~l~~~~HPDk~~~~-------a~~~f~~I~eAY~iL~dp~~R~~YD~~~~ 114 (223)
..|||+||||+++++ .++||++||++++++|||+++.. +.+.|+.||+||++|+||.+|..||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 579999999999987 99999999999999999998743 45789999999999999999999998764
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.68 E-value=1.2e-17 Score=120.35 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=55.9
Q ss_pred ccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhh
Q 027429 48 KKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (223)
Q Consensus 48 ~~d~Y~iLgv~~~--as~~eIK~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD 110 (223)
..++|+||||+++ ++.++||+|||++++++|||+++. .+.|++|++||++|+|+.+|..++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~--~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4689999999999 999999999999999999999864 689999999999999999998743
No 26
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.68 E-value=2.1e-17 Score=135.46 Aligned_cols=66 Identities=24% Similarity=0.502 Sum_probs=59.9
Q ss_pred cCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc-------hhHHHHHHHHHHHHhhcccchhhhhhhhc
Q 027429 49 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (223)
Q Consensus 49 ~d~Y~iLgv~~~a--s~~eIK~ayr~l~~~~HPDk~~~~-------a~~~f~~I~eAY~iL~dp~~R~~YD~~~~ 114 (223)
.|||+||||++++ +.++||++||++++++|||+++.. +.+.|+.||+||++|+||.+|..||..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 3799999999999 999999999999999999998743 34689999999999999999999998754
No 27
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.68 E-value=4.6e-18 Score=139.58 Aligned_cols=65 Identities=28% Similarity=0.337 Sum_probs=57.5
Q ss_pred ccCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhhhhc
Q 027429 48 KKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (223)
Q Consensus 48 ~~d~Y~iLgv~~~as--~~eIK~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~ 114 (223)
..++|+||||+++|+ .++||+|||++++++|||++++ +++|++|++||++|+||.+|+.||+.+.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 478999999999998 6999999999999999999875 4789999999999999999999998764
No 28
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.4e-17 Score=115.62 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=55.4
Q ss_pred CCCCCccCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchh
Q 027429 43 ERASKKKNYYELLGVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK 107 (223)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~-~as~~eIK~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~ 107 (223)
...+...++|+||||++ +++.++||++||++++++|||++++ .+.|++|++||++|+|+..|+
T Consensus 8 ~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~--~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 8 DPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS--PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp CSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC--HHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHhhhhhcC
Confidence 34566689999999999 7999999999999999999999754 579999999999999987663
No 29
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.65 E-value=5.7e-17 Score=133.99 Aligned_cols=67 Identities=31% Similarity=0.559 Sum_probs=60.9
Q ss_pred CCccCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhhhh
Q 027429 46 SKKKNYYELL------GVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (223)
Q Consensus 46 ~~~~d~Y~iL------gv~~-~as~~eIK~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~~~ 113 (223)
....|||+|| |+++ +++.++||++||++++++|||+++. +.+.|+.||+||++|+||.+|..||..+
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 4458999999 4665 8999999999999999999999876 6788999999999999999999999876
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.64 E-value=6.6e-17 Score=133.51 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=56.9
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hhHHHHHHHHHHHHhhcccchhhh
Q 027429 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDY 109 (223)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~~-----a~~~f~~I~eAY~iL~dp~~R~~Y 109 (223)
.++|+||||+++++.++||+|||++++++|||+++.. +.+.|++|++||++|+||.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 6899999999999999999999999999999998643 567999999999999999999887
No 31
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.61 E-value=1.7e-16 Score=117.64 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=49.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hhHHHHHHHHHHHHhhc
Q 027429 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMR 102 (223)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~~-----a~~~f~~I~eAY~iL~d 102 (223)
.++|++|||++.|+.+|||+|||++++++|||+++.. +++.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999998743 57799999999999975
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.60 E-value=1.9e-16 Score=120.20 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=50.9
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------chhHHHHHHHHHHHHhhcccc
Q 027429 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVLMRGDL 105 (223)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~---------~a~~~f~~I~eAY~iL~dp~~ 105 (223)
..|||+|||++. |+.++||+|||++++++|||+++. .++++|+.|++||++|+|+..
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 479999999996 999999999999999999999752 246799999999999999863
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.56 E-value=4.1e-16 Score=151.98 Aligned_cols=72 Identities=42% Similarity=0.638 Sum_probs=40.6
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchhHHHHHHHHHHHHhhcccchhhhhhhhccc
Q 027429 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG--QKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (223)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~--~~a~~~f~~I~eAY~iL~dp~~R~~YD~~~~~~ 116 (223)
.....|||+||||+++|+.+|||+|||++++++|||+++ +.+.+.|++|++||++|+||.+|+.||+.+...
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence 344689999999999999999999999999999999985 346789999999999999999999999977543
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.05 E-value=1.1e-10 Score=102.94 Aligned_cols=64 Identities=38% Similarity=0.638 Sum_probs=54.5
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk~~~~-----a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
..++|++||+.+.++.++|+++|+++++++|||+.+.+ +.+.|+.|++||++|+||++|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 35899999999999999999999999999999998743 56799999999999999999999996
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.6e-10 Score=78.96 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred ccCcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhc
Q 027429 48 KKNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR 102 (223)
Q Consensus 48 ~~d~Y~iLgv~~~---as~~eIK~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~d 102 (223)
..+.|.||||+++ ++.++|+++||+|...+|||++++. ....+|++|++.|..
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~--yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF--YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHHHHH
Confidence 3567999999999 9999999999999999999998664 455789999999964
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.67 E-value=0.21 Score=47.54 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=36.7
Q ss_pred ccCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Q 027429 48 KKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKV 99 (223)
Q Consensus 48 ~~d~Y~iLgv~~~as~--~eIK~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~i 99 (223)
..+||.+||++..... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHhccc
Confidence 4569999999776555 67999999999976665 4678888888875
No 37
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=79.39 E-value=0.38 Score=30.14 Aligned_cols=23 Identities=39% Similarity=1.014 Sum_probs=18.2
Q ss_pred cccccccccCCcceeeeeeeEee
Q 027429 143 FVDENACIGCRECVHHASNTFVM 165 (223)
Q Consensus 143 f~~e~~~igc~~c~~~a~~t~~~ 165 (223)
.++...|++|+.|....|..+.+
T Consensus 3 ~i~~~~C~~C~~C~~~Cp~~~~~ 25 (59)
T 1dwl_A 3 VIDHEECIGCESCVELCPEVFAM 25 (59)
T ss_dssp EESSCCCSSCCGGGGTSTTTEEE
T ss_pred EEChhhCcChhHHHHHCCHHhee
Confidence 45677899999998888865665
No 38
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=77.52 E-value=0.54 Score=32.00 Aligned_cols=26 Identities=35% Similarity=0.747 Sum_probs=21.3
Q ss_pred ccccccccccCCcceeeeeeeEeeec
Q 027429 142 LFVDENACIGCRECVHHASNTFVMDE 167 (223)
Q Consensus 142 ~f~~e~~~igc~~c~~~a~~t~~~ee 167 (223)
+.++...|+||+.|....|..|.+++
T Consensus 4 v~vd~~~CigCg~C~~~CP~~~~~~~ 29 (81)
T 1iqz_A 4 TIVDKETCIACGACGAAAPDIYDYDE 29 (81)
T ss_dssp EEECTTTCCCCSHHHHHCTTTEEECT
T ss_pred EEEecccCcccChhhHhCchheeeCC
Confidence 45788899999999998887777653
No 39
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=73.26 E-value=0.43 Score=30.71 Aligned_cols=55 Identities=29% Similarity=0.503 Sum_probs=32.4
Q ss_pred ccccccccccCCcceeeeeeeEeeecccCceEEEeeeCCCCceE-----EEecCCCcEEeee
Q 027429 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNI-----EVKIPLNRISANR 198 (223)
Q Consensus 142 ~f~~e~~~igc~~c~~~a~~t~~~ee~~~g~~~~~q~g~~~~~i-----~~aiP~~~i~~~~ 198 (223)
+.++...|+||+.|....|..+.+++..+...+. ... ...-+ ..++|.+||++.+
T Consensus 4 ~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~-~~~-~~~C~~C~~C~~~CP~~Ai~~~~ 63 (64)
T 1dax_A 4 FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVK-DVE-GASQEEVEEAMDTCPVQCIHWED 63 (64)
T ss_dssp CEECSTTCCSCCHHHHHCTTTEEECSSSSSEEEC-CGG-GSCHHHHHHHHHHSSSCCEECCC
T ss_pred EEEccccCCCchHHHHhCCccEeEcCCCCEEEEe-cCC-CcchhHHHHHHHhCCHhhEeeec
Confidence 4567789999999988888666666432332221 110 11111 1233999998754
No 40
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=72.91 E-value=1.7 Score=34.46 Aligned_cols=38 Identities=5% Similarity=0.135 Sum_probs=31.0
Q ss_pred eeeeeeeEeeecccCceEEEeeeCC-------CCceEEEecCCCc
Q 027429 156 VHHASNTFVMDEATGCARVKVQYGD-------SDQNIEVKIPLNR 193 (223)
Q Consensus 156 ~~~a~~t~~~ee~~~g~~~~~q~g~-------~~~~i~~aiP~~~ 193 (223)
++.+.++++|+|++.|+++.+++.. ....+++.||+|.
T Consensus 2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~ 46 (170)
T 1c3g_A 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGW 46 (170)
T ss_dssp EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTC
T ss_pred CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCc
Confidence 4677889999999999999988741 2367889999997
No 41
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=72.42 E-value=1.8 Score=34.54 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=31.6
Q ss_pred eeeeeeeEeeecccCceEEEeeeCC----------CCceEEEecCCCc
Q 027429 156 VHHASNTFVMDEATGCARVKVQYGD----------SDQNIEVKIPLNR 193 (223)
Q Consensus 156 ~~~a~~t~~~ee~~~g~~~~~q~g~----------~~~~i~~aiP~~~ 193 (223)
++.+.++++|+|++.|+++.+++.. ....+++.||+|.
T Consensus 5 d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~ 52 (180)
T 2q2g_A 5 SHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGW 52 (180)
T ss_dssp EEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTC
T ss_pred CEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCC
Confidence 6788999999999999999988742 2367888889997
No 42
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=69.88 E-value=1.2 Score=37.63 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=44.3
Q ss_pred ceeeeeeeEeeecccCceEEEeeeCCCCceEE-Eec-----CCCcEEeeecccCCceEeehh-hhhhhhhhhccCC
Q 027429 155 CVHHASNTFVMDEATGCARVKVQYGDSDQNIE-VKI-----PLNRISANRKYIEQNIYLFIW-FIRGMVHKLSGFC 223 (223)
Q Consensus 155 c~~~a~~t~~~ee~~~g~~~~~q~g~~~~~i~-~ai-----P~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 223 (223)
-++.+.+.++|+|++.|.++.+.+. ..+. ..| ..+...-+..|.|.+.+.... +.+ |+.+++..|
T Consensus 12 ~d~~~~l~vslee~~~G~~k~i~~~---r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C 83 (248)
T 1nlt_A 12 KDIKHEISASLEELYKGRTAKLALN---KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTEC 83 (248)
T ss_dssp CCEEEEEEECTTHHHHCEEEEEEEE---EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSC
T ss_pred CCEEEEEEecHHHhcCCceEEEEee---EEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcC
Confidence 3788999999999999999999883 2222 122 233356778888888765433 444 666666655
No 43
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=58.95 E-value=3.8 Score=32.69 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=28.4
Q ss_pred eeeeeeeEeeecccCceEEEeeeCC------------CCceEEEecCCCc
Q 027429 156 VHHASNTFVMDEATGCARVKVQYGD------------SDQNIEVKIPLNR 193 (223)
Q Consensus 156 ~~~a~~t~~~ee~~~g~~~~~q~g~------------~~~~i~~aiP~~~ 193 (223)
++.+.+.++|+|++.|+++.+.+.. ....+++.||+|.
T Consensus 4 d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~ 53 (181)
T 3agx_A 4 PVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGW 53 (181)
T ss_dssp --CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTC
T ss_pred CEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCc
Confidence 4667889999999999988887631 1256888889987
No 44
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=38.87 E-value=17 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.050 Sum_probs=30.6
Q ss_pred eeeeeeeEeeecccCceEEEeeeCCCCceEEEecCCCc
Q 027429 156 VHHASNTFVMDEATGCARVKVQYGDSDQNIEVKIPLNR 193 (223)
Q Consensus 156 ~~~a~~t~~~ee~~~g~~~~~q~g~~~~~i~~aiP~~~ 193 (223)
++.+...+++.++.-|.++.+..-++ .+++.||++.
T Consensus 13 DL~~~~~Isl~eAl~G~~i~v~tldG--~~~v~ip~g~ 48 (109)
T 3i38_A 13 NLEIVLPLAPWEAALGAKVTVPTLKE--SILLTVPPGS 48 (109)
T ss_dssp EEEEEEEECHHHHHHCEEEEECCSSS--CEEEEECTTC
T ss_pred EEEEEEEcCHHHHhCCCEEEEEcCCC--CEEEeeCCCc
Confidence 78999999999999998888876554 5889999885
No 45
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=37.88 E-value=5.9 Score=27.65 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=19.1
Q ss_pred CccccccccccCCcceeeee-eeEeeec
Q 027429 141 ALFVDENACIGCRECVHHAS-NTFVMDE 167 (223)
Q Consensus 141 ~~f~~e~~~igc~~c~~~a~-~t~~~ee 167 (223)
.+.++...|++|+.|....+ ..+.+.+
T Consensus 37 ~~~id~~~C~~Cg~C~~~CP~~ai~~~~ 64 (103)
T 1xer_A 37 IVGVDFDLCIADGSCINACPVNVFQWYD 64 (103)
T ss_dssp SEEEETTTCCCCCHHHHHCTTCCCEEEE
T ss_pred eEEEehhhCCChhhHHHHcCccCeeccc
Confidence 45567889999999987776 3444443
No 46
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.15 E-value=8.7 Score=27.57 Aligned_cols=22 Identities=5% Similarity=0.062 Sum_probs=14.5
Q ss_pred eeeeeeEeeecccCceEEEeee
Q 027429 157 HHASNTFVMDEATGCARVKVQY 178 (223)
Q Consensus 157 ~~a~~t~~~ee~~~g~~~~~q~ 178 (223)
...++.++|+|++.|..+.+++
T Consensus 4 ~~~~l~vslee~~~G~~~~i~~ 25 (104)
T 2ctt_A 4 GSSGMELTFNQAAKGVNKEFTV 25 (104)
T ss_dssp CCCCCCCCCSSCCSSSCTTCCS
T ss_pred eEEEEEEEHHHHcCCCEEEEEe
Confidence 3445667777777777666665
No 47
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=34.07 E-value=48 Score=21.27 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD 110 (223)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH---NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC---HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4567777888888864 4577889999999998766555444
No 48
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.28 E-value=33 Score=23.46 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~~ 112 (223)
-..+|...+.-||+.. ...+..+.|.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~--~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS--DEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC--SHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567778888899974 3467889999999999977766655543
No 49
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=26.75 E-value=78 Score=21.05 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH---NAELSKMLGKSWKALTLAEKRPFVEE 59 (83)
T ss_dssp HHHHHHHHHHHCSSSC---HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567778888899864 45778899999999987665554443
No 50
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=26.60 E-value=33 Score=26.31 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 027429 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDI 81 (223)
Q Consensus 50 d~Y~iLgv~~~as~~eIK~ayr~l~~~~HPDk 81 (223)
-++..|.|....+.+|++++=..+..++|||-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 45788889999999999999999999999984
No 51
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=26.34 E-value=16 Score=23.81 Aligned_cols=58 Identities=19% Similarity=0.397 Sum_probs=30.3
Q ss_pred cccccccccCCcceeeee-eeEeeecccCc--eEEEeeeCCCCceEE-----EecCCCcEEeeeccc
Q 027429 143 FVDENACIGCRECVHHAS-NTFVMDEATGC--ARVKVQYGDSDQNIE-----VKIPLNRISANRKYI 201 (223)
Q Consensus 143 f~~e~~~igc~~c~~~a~-~t~~~ee~~~g--~~~~~q~g~~~~~i~-----~aiP~~~i~~~~~~~ 201 (223)
+++...|++|+.|....| ..+.+++.-+. ....... +...=+. .++|.+||.|.....
T Consensus 4 ~~~~~~C~~Cg~C~~~CP~~a~~~~~~~~~~~~~~~~~~-~~~~C~~Cg~C~~~CP~~ai~~~~~~~ 69 (80)
T 1jb0_C 4 VKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSP-RTEDCVGCKRCETACPTDFLSIRVYLG 69 (80)
T ss_dssp EEEETTCCCCCHHHHHCTTCCCEEEECSSSTTSEEEECT-TGGGCCCCCHHHHHCCSSSCSEEEECC
T ss_pred cccCCcCcChhHHHHHCCcccccccccccccccccccCC-CCCcCcCcCChhhhCCCCccEeeeecc
Confidence 456678999999987776 34444432121 1111111 1111111 233999999876553
No 52
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=26.27 E-value=81 Score=20.94 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH---NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC---HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 3556677777788753 45778899999999997766655554
No 53
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=25.38 E-value=11 Score=23.47 Aligned_cols=25 Identities=32% Similarity=0.685 Sum_probs=19.4
Q ss_pred ccccccccccCCcceeeeeeeEeee
Q 027429 142 LFVDENACIGCRECVHHASNTFVMD 166 (223)
Q Consensus 142 ~f~~e~~~igc~~c~~~a~~t~~~e 166 (223)
+.++...|+||+.|....|..+.++
T Consensus 4 ~~id~~~C~~C~~C~~~Cp~~~~~~ 28 (66)
T 1sj1_A 4 VSVDQDTCIGDAICASLCPDVFEMN 28 (66)
T ss_dssp EEECTTTCCCCCHHHHHCTTTEEEC
T ss_pred EEECcccCcCchHHHHhCCceEEEC
Confidence 4567789999999988887666664
No 54
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=25.19 E-value=53 Score=24.09 Aligned_cols=36 Identities=8% Similarity=-0.078 Sum_probs=29.8
Q ss_pred eeeeeeeEeeecccCceEEEeeeCCCCceEEEecCCC
Q 027429 156 VHHASNTFVMDEATGCARVKVQYGDSDQNIEVKIPLN 192 (223)
Q Consensus 156 ~~~a~~t~~~ee~~~g~~~~~q~g~~~~~i~~aiP~~ 192 (223)
++....++++.++.-|.++.+.--++ ..+.+.||+|
T Consensus 8 DL~~~~~Isl~eAllG~~i~v~tldG-~~~~v~ip~g 43 (121)
T 1xao_A 8 DLVYEAEIDLLTAIAGGEFALEHVSG-DWLKVGIVPG 43 (121)
T ss_dssp EEEEEEEEEHHHHHHCEEEEEECTTS-CEEEEEECTT
T ss_pred eEEEEEEcCHHHHhCCCEEEEecCCC-CEEEEEeCCC
Confidence 78889999999999888888775444 5688999988
No 55
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=25.05 E-value=1.4e+02 Score=19.40 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS---IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHHCTTCC---HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456666777789853 45778899999999997666554443
No 56
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=24.75 E-value=1e+02 Score=21.12 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDLP---FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTCC---HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556777778889853 45778899999999987766555443
No 57
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=24.00 E-value=1.3e+02 Score=19.47 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
-+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK---VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC---HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4556777788899864 35778899999999987 666654
No 58
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=23.62 E-value=89 Score=20.34 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~y~~~ 57 (76)
T 1hry_A 16 SRDQRRKMALENPRMR---NSEISKQLGYQWKMLTEAEKWPFFQE 57 (76)
T ss_dssp HHHHHHHHHHHCSCCS---SSHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC---HHHHHHHHHhHHHhCCHHHHHHHHHH
Confidence 3556677777899864 24677899999999986665554443
No 59
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=23.61 E-value=14 Score=22.50 Aligned_cols=25 Identities=36% Similarity=0.832 Sum_probs=18.6
Q ss_pred ccccccccccCCcceeeeeeeEeee
Q 027429 142 LFVDENACIGCRECVHHASNTFVMD 166 (223)
Q Consensus 142 ~f~~e~~~igc~~c~~~a~~t~~~e 166 (223)
+.++...|++|+.|....|..+.++
T Consensus 3 ~~i~~~~C~~C~~C~~~Cp~~~~~~ 27 (60)
T 1rof_A 3 VRVDADACIGCGVCENLCPDVFQLG 27 (60)
T ss_dssp SEECTTTCCSCCSSTTTCTTTBCCC
T ss_pred EEEchhhCCCChHHHHhCcHHHeEC
Confidence 4567788999999988887644443
No 60
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=22.38 E-value=95 Score=20.61 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD---NRGATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSC---TTHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4566777788899854 34677889999999987665554443
No 61
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=22.37 E-value=20 Score=35.84 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=33.4
Q ss_pred ccccccccccCCcceeeee----eeEeeecccCceEEEeeeCCCCceEE-----EecCC-CcEEeeeccc
Q 027429 142 LFVDENACIGCRECVHHAS----NTFVMDEATGCARVKVQYGDSDQNIE-----VKIPL-NRISANRKYI 201 (223)
Q Consensus 142 ~f~~e~~~igc~~c~~~a~----~t~~~ee~~~g~~~~~q~g~~~~~i~-----~aiP~-~~i~~~~~~~ 201 (223)
+.+++..|++|+.|...+| ..+.+++..+.. .+. ..-+. ..||. +||+++.+..
T Consensus 946 ~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~----~~~--~~C~~Cg~C~~~CP~~~Ai~~~~~~~ 1009 (1025)
T 1gte_A 946 AVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLP----TVT--DTCTGCTLCLSVCPIIDCIRMVSRTT 1009 (1025)
T ss_dssp EEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCE----EEC--TTCCCCCHHHHHCSSTTTEEEEECCS
T ss_pred EEEEcccCcccCHHHHhcCccccCCEEEeCCCceE----EeC--ccCCChhHHHhhCCCCCCEEEecCcc
Confidence 4467889999999988887 455555432111 111 11221 13499 9999998763
No 62
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.95 E-value=89 Score=21.41 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
-+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS---LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSSC---HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456667777899863 45778899999999987666554443
No 63
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=21.38 E-value=87 Score=21.39 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhhh
Q 027429 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (223)
Q Consensus 67 K~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~~ 112 (223)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 32 ~~~~r~~~k~~~P~~~---~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS---ESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHHTHHHHHHHCTTSC---HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677778889853 457788999999999877666555543
No 64
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=21.21 E-value=1.7e+02 Score=18.59 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHhhcccchhhhhh
Q 027429 68 EAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (223)
Q Consensus 68 ~ayr~l~~~~HPDk~~~~a~~~f~~I~eAY~iL~dp~~R~~YD~ 111 (223)
+..|...+.-||+... ...+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~r~~~~~~~p~~~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 14 QTCREEHKKKHPDASV-NFSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHHCTTCCC-CHHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHHCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 3455566777898542 125778899999999987766555443
Done!