BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027432
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 258 bits (658), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/222 (63%), Positives = 163/222 (73%), Gaps = 15/222 (6%)
Query: 7 AVPAPSRNMAVPPPASNGP--TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIAIS 64
AV AP M + P A NGP + VK+RMCN+ N+AEGCK+G KCHFAHGE ELGKP+ +
Sbjct: 76 AVAAPPGRMPLGPGAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGKPMLLD 135
Query: 65 HDDPRAFGAVPGRMGGRYEPPPAPGP----AASFGASATAKISVDASLAGAIIGKGGVNS 120
+ P G++P +E PP PGP ++FGASATAKISVDASLAG IIGKGG N+
Sbjct: 136 NSMPHPMGSMP------FEAPPMPGPDIVPPSTFGASATAKISVDASLAGGIIGKGGTNT 189
Query: 121 KQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRI--GPAHAKNPAT 178
K I R TGAKL+IRD+E++PNL+NIELEG+F+QIK ASAMV ELIVRI AKNP
Sbjct: 190 KHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHASAMVTELIVRISGNAPPAKNPGR 249
Query: 179 AGSAAHPLSSNFKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 220
A P SNFKTKLC NF KGSCTFGDRCHFAHG +ELRK
Sbjct: 250 GSHAGGP-GSNFKTKLCENFNKGSCTFGDRCHFAHGESELRK 290
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 11 PSRNMAVPPPASNGPTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIA 62
P R P SN K+++C N C FGD+CHFAHGE EL KP A
Sbjct: 247 PGRGSHAGGPGSN----FKTKLCENFNKGS-CTFGDRCHFAHGESELRKPPA 293
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 29 KSRMCNRLNSAEGCKFGDKCHFAH---GEWELGKPIAISHDDPRAFGAVPGRM 78
K + C + S GC FG CHF H G ++ + SH A A PGRM
Sbjct: 34 KLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQAAAKM-TSHGG-TAVAAPPGRM 84
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 247 bits (631), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 141/230 (61%), Positives = 158/230 (68%), Gaps = 9/230 (3%)
Query: 1 MMNL--PQAVPAPSRNMAVPPPASNGPTV--VKSRMCNRLNSAEGCKFGDKCHFAHGEWE 56
M NL P P P R M + +GP VK+R+CN+ N+AEGCK+GDKCHFAHGE E
Sbjct: 70 MTNLGGPAIAPPPGR-MPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERE 128
Query: 57 LGKPIAISHDDPRAFGAVP-GRMGGRYEPPPAPGPAASFGASATAKISVDASLAGAIIGK 115
LGKP+ + P G P G P PA ASFGASATAKISVDASLAG IIG+
Sbjct: 129 LGKPMLMDSSMPPPMGPRPTGHFAPPPMPSPAMSTPASFGASATAKISVDASLAGGIIGR 188
Query: 116 GGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIG---PAH 172
GGVN+KQI R TGAKL+IRDHE+D NL+NIELEG+F+QIK ASAMVRELIV IG P
Sbjct: 189 GGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMVRELIVSIGGGAPPQ 248
Query: 173 AKNPATAGSAAHPLSSNFKTKLCGNFAKGSCTFGDRCHFAHGAAELRKTA 222
K P SNFKTKLC NF KGSCTFGDRCHFAHG ELRK+A
Sbjct: 249 GKKPVGGSHRGGGPGSNFKTKLCENFTKGSCTFGDRCHFAHGENELRKSA 298
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 28 VKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIA 62
K+++C C FGD+CHFAHGE EL K A
Sbjct: 266 FKTKLCENFTKGS-CTFGDRCHFAHGENELRKSAA 299
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 29 KSRMCNRLNSAEGCKFGDKCHFAH 52
KS+ C + S GC FG+ CHF H
Sbjct: 35 KSKPCTKFFSTSGCPFGEGCHFLH 58
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 233 bits (594), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 136/218 (62%), Positives = 152/218 (69%), Gaps = 24/218 (11%)
Query: 20 PASNGPTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIAISHDDPRAFGAVPGRMG 79
PAS+G K+RMC + N+AEGCKFGDKCHFAHGE ELGKP +SH+ A+ MG
Sbjct: 100 PASSG----KTRMCTKYNTAEGCKFGDKCHFAHGERELGKPAYMSHES-----AMAPPMG 150
Query: 80 GRYEPPPAPGPAA-------SFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLS 132
GRY P P P A +FGASATAKISVDASLAG IIGKGGVN+KQICR TG KLS
Sbjct: 151 GRYGGRPEPPPPAAMGPPAGNFGASATAKISVDASLAGGIIGKGGVNTKQICRVTGVKLS 210
Query: 133 IRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGPA--------HAKNPATAGSAAH 184
IRDHE+D NL+NIELEG+F+QIKQAS MV ELI I P+ A A AG
Sbjct: 211 IRDHESDSNLKNIELEGNFDQIKQASNMVGELIATISPSTPAKKPAGSAAGAAPAGRGGP 270
Query: 185 PLSSNFKTKLCGNFAKGSCTFGDRCHFAHGAAELRKTA 222
SN+KTKLC NF KG+CTFGDRCHFAHG E RK A
Sbjct: 271 GGRSNYKTKLCENFVKGTCTFGDRCHFAHGENEQRKGA 308
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 28 VKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIA 62
K+++C C FGD+CHFAHGE E K A
Sbjct: 276 YKTKLCENFVKGT-CTFGDRCHFAHGENEQRKGAA 309
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 201 bits (511), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 139/208 (66%), Gaps = 19/208 (9%)
Query: 29 KSRMCNRLNSAEGCKFGDKCHFAH---GEWE-------LGKPIAISHDDPRAFGAVPGRM 78
KS+ C + S GC FGD CHF H G + L P++ + + G GR
Sbjct: 38 KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPGGRF 97
Query: 79 GGRYEPPPAPGPAASFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEA 138
GR +P GP + FGAS T+KISVDASLAGAIIGKGG++SKQICR+TGAKLSI+DHE
Sbjct: 98 SGRGDP--GSGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHER 154
Query: 139 DPNLRNIELEGSFEQIKQASAMVRELIVRIGPAHAKNPATAGSAA---HPLSSNFKTKLC 195
DPNL+ IELEG+FEQI AS MVRELI R+G K P G HP SN+KTK+C
Sbjct: 155 DPNLKIIELEGTFEQINVASGMVRELIGRLGS--VKKPQGIGGPEGKPHP-GSNYKTKIC 211
Query: 196 GNFAKGSCTFGDRCHFAHGAAELRKTAI 223
++KG+CT+GDRCHFAHG +ELR++ I
Sbjct: 212 DRYSKGNCTYGDRCHFAHGESELRRSGI 239
>sp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis
thaliana GN=At3g12130 PE=2 SV=1
Length = 248
Score = 201 bits (510), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/214 (53%), Positives = 137/214 (64%), Gaps = 23/214 (10%)
Query: 29 KSRMCNRLNSAEGCKFGDKCHFAH---GEWE-------LGKPIAISHDDPRAFGAVPGRM 78
KS+ C + S GC FG+ CHF H G + +G PI + + G GR
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGN-GGRF 96
Query: 79 GGRYEPPPAPGPAASFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEA 138
GR E PG ++FG SATA+ SVDASLAGAIIGKGGV+SKQICRQTG KLSI+DHE
Sbjct: 97 SGRGES--GPGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHER 154
Query: 139 DPNLRNIELEGSFEQIKQASAMVRELIVRIGPAHAKNPATAGSAA---------HPLSSN 189
DPNL+NI LEG+ EQI +ASAMV++LI R+ A K P HP SN
Sbjct: 155 DPNLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHP-GSN 213
Query: 190 FKTKLCGNFAKGSCTFGDRCHFAHGAAELRKTAI 223
FKTK+C F+KG+CTFGDRCHFAHG AELRK+ I
Sbjct: 214 FKTKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 89/228 (39%), Gaps = 40/228 (17%)
Query: 18 PPPASNGPTVV--KSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIAISHDDPRAFGAVP 75
PPP + G + K+RMC + A C+ G+ C+FAHG +L +P P + +
Sbjct: 93 PPPVNKGTANIFYKTRMCAKF-RAGTCRNGELCNFAHGIEDLRQP-------PSNWQEIV 144
Query: 76 GRMGGRYEPPPAPGPAASFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRD 135
G PPPA + SLA + + K I R +
Sbjct: 145 G-------PPPAGQDRER--ERERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFG 195
Query: 136 HEADPNLRNIELEGSFEQIKQASAMVREL-IVRIGPAHAKNPATA----------GSAAH 184
E R + + ++ S +RE ++ +G A P+ GS
Sbjct: 196 EECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPV 255
Query: 185 PLSSN---------FKTKLCGNF-AKGSCTFGDRCHFAHGAAELRKTA 222
P N +KT+LC F G C FGD+CHFAHG AEL +
Sbjct: 256 PAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSV 303
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 15 MAVPPPASNGPTV----VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
+ VP P +NG V K+R+C + + C FGDKCHFAHG+ EL
Sbjct: 253 IPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 188 SNFKTKLCGNFA-KGSCTFGDRCHFAHGAAELRK 220
SN+KT++C + G C FG +CHFAHGAAEL K
Sbjct: 244 SNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 190 FKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 220
FKTKLC F G+C + C+FAHG ELRK
Sbjct: 88 FKTKLCCKFRAGTCPYVTNCNFAHGMEELRK 118
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 25 PTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGK 59
P+ K+R+CN+ C FG KCHFAHG EL K
Sbjct: 243 PSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 28 VKSRMCNRLNSAEGCKFGDKCHFAHGE 54
K R C + + EGC +GD C F H E
Sbjct: 170 YKGRHCKKFYTDEGCPYGDACTFLHDE 196
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 188 SNFKTKLCGNFA-KGSCTFGDRCHFAHGAAELRK 220
SN+KT++C + G C FG +CHFAHGAAEL +
Sbjct: 259 SNWKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 190 FKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 220
FKTKLC F G+C + C+FAH ELR+
Sbjct: 92 FKTKLCCKFRAGTCPYITNCNFAHTVEELRR 122
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 25 PTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
P+ K+R+CN+ C FG KCHFAHG EL
Sbjct: 258 PSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 29 KSRMCNRLNSAEGCKFGDKCHFAHGE 54
K R C + + EGC +G+ C F H E
Sbjct: 174 KGRHCKKFYTEEGCPYGESCTFLHDE 199
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 152 EQIKQASAMVRELIVRIGPAHAKNPATAGSAAHPLSS-NFKTKLCGNF-AKGSCTFGDRC 209
E + +AS V +GP G+ A L S N+KT++C + G C FG C
Sbjct: 113 ETVTEASRNRESFAVSLGPR--------GNVAQTLKSPNWKTRICNKWQTTGYCPFGSHC 164
Query: 210 HFAHGAAEL 218
HFAHG +EL
Sbjct: 165 HFAHGPSEL 173
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 188 SNFKTKLCGNFAKGSCTF-GDRCHFAHGAAELR 219
S FKTKLC F G+C + CHFAH A ELR
Sbjct: 70 SFFKTKLCFKFRAGTCPYSASSCHFAHSAEELR 102
Score = 38.1 bits (87), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 3 NLPQAVPAPSRN-----MAVPPPASNGPTV----VKSRMCNRLNSAEGCKFGDKCHFAHG 53
N + V SRN +++ P + T+ K+R+CN+ + C FG CHFAHG
Sbjct: 110 NWQETVTEASRNRESFAVSLGPRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHG 169
Query: 54 EWEL 57
EL
Sbjct: 170 PSEL 173
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3
PE=1 SV=2
Length = 572
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 95 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSF 151
G +V A G +IGKGG N K I +Q+GA + ++ + +DPNLR + G
Sbjct: 352 GGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVP 411
Query: 152 EQIKQASAMVRELI 165
+QI+ A ++ E +
Sbjct: 412 QQIEVARQLIDEKV 425
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKL-SIRD----HEADPNLRNIELEGSF 151
S +I + AS G +IG+GG KQ+ +TG K+ I+D AD LR + G
Sbjct: 162 STIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLR---ITGDA 218
Query: 152 EQIKQASAMVRELI 165
+++QA MV E+I
Sbjct: 219 FKVQQAREMVLEII 232
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 99 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQAS 158
T + V + G IIG+GG +I ++G K+ I + R L G+ E I+QA
Sbjct: 79 TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138
Query: 159 AMVRELIVR 167
++ +++ R
Sbjct: 139 RLLGQIVDR 147
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1
PE=1 SV=3
Length = 644
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 109 AGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 165
G IIGKGG K I +Q+GA++ ++ + ADPN++ + G+ +QI A ++ E I
Sbjct: 388 TGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 86 PAPGPAASFG-ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSI-----RDHEAD 139
PAPG G +A +I + AS AG +IGKGG KQ+ + G K+ + ++ AD
Sbjct: 173 PAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD 232
Query: 140 PNLRNIELEGSFEQIKQASAMVRELI 165
LR + G +++QA MV ELI
Sbjct: 233 KPLR---ITGDPYKVQQAKEMVLELI 255
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 99 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQAS 158
T + V + G IIG+GG +I +++G K+ I R+ L G+ E ++ A
Sbjct: 102 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK 161
Query: 159 AMVRELIVRIGPA----HAKNPATA 179
++ +++ + PA H P A
Sbjct: 162 RLLDQIVEKGRPAPGFHHGDGPGNA 186
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 169 GPAHAKNPATAGSAAHPLSSN-FKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
G PA +G+ + FKT+LC + + G C +GD+C FAHG ELR
Sbjct: 237 GDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELR 289
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 27 VVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIAISHDDPRAFGAV 74
+ K+ +CN+ C +GD+C FAHG EL +P+ I H PR AV
Sbjct: 258 MFKTELCNKWEETGDCPYGDQCQFAHGVTEL-RPV-IRH--PRYKTAV 301
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K OS=Oryctolagus cuniculus
GN=HNRNPK PE=2 SV=1
Length = 463
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 82 YEPPPAPGPAASF-----------GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAK 130
YEP G S+ G T ++++ LAG+IIGKGG KQI ++GA
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420
Query: 131 LSIRDHEADPNLRNIELEGSFEQIKQASAMVR 162
+ I + R I + G+ +QI+ A +++
Sbjct: 421 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K OS=Rattus norvegicus
GN=Hnrnpk PE=1 SV=1
Length = 463
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 82 YEPPPAPGPAASF-----------GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAK 130
YEP G S+ G T ++++ LAG+IIGKGG KQI ++GA
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420
Query: 131 LSIRDHEADPNLRNIELEGSFEQIKQASAMVR 162
+ I + R I + G+ +QI+ A +++
Sbjct: 421 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K OS=Mus musculus GN=Hnrnpk
PE=1 SV=1
Length = 463
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 82 YEPPPAPGPAASF-----------GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAK 130
YEP G S+ G T ++++ LAG+IIGKGG KQI ++GA
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420
Query: 131 LSIRDHEADPNLRNIELEGSFEQIKQASAMVR 162
+ I + R I + G+ +QI+ A +++
Sbjct: 421 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK
PE=1 SV=1
Length = 463
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 82 YEPPPAPGPAASF-----------GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAK 130
YEP G S+ G T ++++ LAG+IIGKGG KQI ++GA
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420
Query: 131 LSIRDHEADPNLRNIELEGSFEQIKQASAMVR 162
+ I + R I + G+ +QI+ A +++
Sbjct: 421 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|Q32PX7|FUBP1_RAT Far upstream element-binding protein 1 OS=Rattus norvegicus
GN=Fubp1 PE=1 SV=1
Length = 639
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 109 AGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 165
G IIGKGG K I +Q+GA++ ++ + ADPN++ + G+ +QI A ++ E I
Sbjct: 383 TGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 442
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 86 PAPGPAASFG-ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSI-----RDHEAD 139
PAPG G +A +I + AS AG +IGKGG KQ+ + G K+ + ++ AD
Sbjct: 168 PAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD 227
Query: 140 PNLRNIELEGSFEQIKQASAMVRELI 165
LR + G +++QA MV ELI
Sbjct: 228 KPLR---ITGDPYKVQQAKEMVLELI 250
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 99 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQAS 158
T + V + G IIG+GG +I +++G K+ I R+ L G+ E ++ A
Sbjct: 97 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK 156
Query: 159 AMVRELIVRIGPA----HAKNPATA 179
++ +++ + PA H P A
Sbjct: 157 RLLDQIVEKGRPAPGFHHGDGPGNA 181
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 187 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
SS +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 28 VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
K+ +C CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 190 FKTKLCGNF-AKGSCTFGDRCHFAHGAAELRKTA 222
+KT+LC F G C +G RCHF H A E R A
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
>sp|Q5R5H8|HNRPK_PONAB Heterogeneous nuclear ribonucleoprotein K OS=Pongo abelii GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 82 YEPPPAPGPAASF-----------GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAK 130
YEP G S+ G T ++++ LAG+IIGKGG KQI ++GA
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420
Query: 131 LSIRDHEADPNLRNIELEGSFEQIKQASAMVR 162
+ I + R I + G+ +QI+ A +++
Sbjct: 421 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|Q4R4M6|HNRPK_MACFA Heterogeneous nuclear ribonucleoprotein K OS=Macaca fascicularis
GN=HNRNPK PE=2 SV=1
Length = 464
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 82 YEPPPAPGPAASF-----------GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAK 130
YEP G S+ G T ++++ LAG+IIGKGG KQI ++GA
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420
Query: 131 LSIRDHEADPNLRNIELEGSFEQIKQASAMVR 162
+ I + R I + G+ +QI+ A +++
Sbjct: 421 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 187 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
SS +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 190 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELRKTA 222
+KT+LC F G C +G RCHF H A E R A
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 28 VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
K+ +C CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
>sp|Q3T0D0|HNRPK_BOVIN Heterogeneous nuclear ribonucleoprotein K OS=Bos taurus GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 82 YEPPPAPGPAASF-----------GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAK 130
YEP G S+ G T ++++ LAG+IIGKGG KQI ++GA
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420
Query: 131 LSIRDHEADPNLRNIELEGSFEQIKQASAMVR 162
+ I + R I + G+ +QI+ A +++
Sbjct: 421 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 187 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
SS +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 190 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELRKTA 222
+KT+LC F G C +G RCHF H A E R A
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 28 VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
K+ +C CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 190 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
FKT+LC + + G+C +GD+C FAHG AELR
Sbjct: 269 FKTELCNKWEETGACPYGDQCQFAHGVAELR 299
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 27 VVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
+ K+ +CN+ C +GD+C FAHG EL
Sbjct: 268 MFKTELCNKWEETGACPYGDQCQFAHGVAEL 298
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1
PE=1 SV=1
Length = 651
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 109 AGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 165
G IIGKGG K I +Q+GA++ ++ ADPN++ + G+ +QI A ++ E I
Sbjct: 384 TGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 443
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 86 PAPGPAASFG-ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSI-----RDHEAD 139
PAPG G +A +I + AS AG +IGKGG KQ+ + G K+ + ++ AD
Sbjct: 169 PAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD 228
Query: 140 PNLRNIELEGSFEQIKQASAMVRELI 165
LR + G +++QA MV ELI
Sbjct: 229 KPLR---ITGDPYKVQQAKEMVLELI 251
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 99 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQAS 158
T + V + G IIG+GG +I +++G K+ I R+ L G+ E ++ A
Sbjct: 98 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK 157
Query: 159 AMVRELIVRIGPA----HAKNPATA 179
++ +++ + PA H P A
Sbjct: 158 RLLDQIVEKGRPAPGFHHGDGPGNA 182
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 190 FKTKLCGNFA-KGSCTFGDRCHFAHGAAELR 219
+KT+LC +F KGSC +G +C FAHG EL+
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELK 200
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 189 NFKTKLCGNFAK-GSCTFGDRCHFAHG 214
NF+TK C N+ K G C +G RC F HG
Sbjct: 207 NFRTKPCVNWEKLGYCPYGRRCCFKHG 233
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 27 VVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
+ K+ +C C +G KC FAHG EL
Sbjct: 169 LYKTELCESFTLKGSCPYGSKCQFAHGLGEL 199
>sp|Q5ZIQ3|HNRPK_CHICK Heterogeneous nuclear ribonucleoprotein K OS=Gallus gallus
GN=HNRNPK PE=2 SV=1
Length = 427
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 95 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQI 154
G T ++++ LAG+IIGKGG KQI ++GA + I + R I + G+ +QI
Sbjct: 349 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 408
Query: 155 KQASAMVR 162
+ A +++
Sbjct: 409 QNAQYLLQ 416
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 191 KTKLCGNFAKGSCTFGDRCHFAHGAAELR 219
KT+LC + +G+C +G RC FAHG ELR
Sbjct: 384 KTELCNKWERGACPYGARCRFAHGLQELR 412
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 187 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELRKT 221
+S +KT+LC F + G C +G++C FAHG+ ELR
Sbjct: 133 TSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNV 168
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 17 VPPPASNGPTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
+PP + K+ +C A CK+G+KC FAHG EL
Sbjct: 125 LPPQQPMNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHEL 165
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 190 FKTKLCGNF-AKGSCTFGDRCHFAHGAAE 217
+KT+ C F + G C +G RCHF H A E
Sbjct: 174 YKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 190 FKTKLCGNFA-KGSCTFGDRCHFAHGAAELR 219
+KT+LC +F KG C +G++C FAHG EL+
Sbjct: 205 YKTELCESFTIKGYCKYGNKCQFAHGLNELK 235
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 4 LPQAVP-------APSRNMAVPPPASNGPTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE 56
LP +P P R + P T+ K+ +C CK+G+KC FAHG E
Sbjct: 174 LPYTLPIQKTTKLEPCRRAPLQLPQLVNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNE 233
Query: 57 L 57
L
Sbjct: 234 L 234
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 187 SSNFKTKLCGNFAK-GSCTFGDRCHFAHG 214
S+N++TK C N++K G C +G RC F HG
Sbjct: 240 SNNYRTKPCINWSKLGYCPYGKRCCFKHG 268
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 186 LSSNFKTKLCGNFAKG--SCTFGDRCHFAHGAAELRKTAI 223
L NFKT+LC A G C G RC FAHG ELR + I
Sbjct: 270 LPHNFKTRLCMTHAAGINPCALGARCKFAHGLKELRASDI 309
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 187 SSNFKTKLCGNFAKGS---CTFGDRCHFAH 213
++ +KTKLC NFA+G C +G RC F H
Sbjct: 315 NNKYKTKLCKNFARGGSGVCPYGLRCEFVH 344
>sp|Q3U0V1|FUBP2_MOUSE Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp
PE=1 SV=2
Length = 748
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 102 ISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQAS 158
S+ G +IG+GG N K I +QTGA + I DPN + + GS +QI A
Sbjct: 430 FSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAK 489
Query: 159 AMVRELI 165
++ E I
Sbjct: 490 QLIEEKI 496
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 96 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIK 155
S T + V + G IIG+GG +I + +G K+ I R++ L G+ E ++
Sbjct: 144 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQ 203
Query: 156 QASAMVRELIVR 167
+A M+ +++ R
Sbjct: 204 KAKMMLDDIVSR 215
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 80 GRYEPPPAPGPAASFGASATAK-ISVDASLAGAIIGKGGVNSKQICRQTGAKLS-IRDHE 137
GR PP A+ G + T + I + A AG +IGKGG KQ+ + G K+ I+D
Sbjct: 216 GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS 275
Query: 138 ADPNL-RNIELEGSFEQIKQASAMVRELI 165
+ N+ + + + G +++QA MV +++
Sbjct: 276 QNTNVDKPLRIIGDPYKVQQACEMVMDIL 304
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 187 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 99 STRYKTELCRPFEESGACKYGEKCQFAHGFHELR 132
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 26 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
T K+ +C + CK+G+KC FAHG EL
Sbjct: 100 TRYKTELCRPFEESGACKYGEKCQFAHGFHEL 131
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 190 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELRK 220
+KT+LC F G C +G RCH H A E R+
Sbjct: 140 YKTELCRTFHTIGFCPYGPRCHLIHNAEERRQ 171
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 187 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 129 STRYKTELCRPFEESGACKYGEKCQFAHGFHELR 162
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 190 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELRK 220
+KT+LC F G C +G RCHF H A E R+
Sbjct: 170 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQ 201
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 26 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
T K+ +C + CK+G+KC FAHG EL
Sbjct: 130 TRYKTELCRPFEESGACKYGEKCQFAHGFHEL 161
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 187 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 131 STRYKTELCRPFEENGACKYGEKCQFAHGFHELR 164
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 190 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELRK 220
+KT+LC F G C +G RCHF H A E R+
Sbjct: 172 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQ 203
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 26 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
T K+ +C CK+G+KC FAHG EL
Sbjct: 132 TRYKTELCRPFEENGACKYGEKCQFAHGFHEL 163
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 189 NFKTKLCGNFAK-GSCTFGDRCHFAHGAAELRK 220
+KT+LC F++ G C +G +C FAHG ELR+
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 135
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 189 NFKTKLCGNFA-KGSCTFGDRCHFAHGAAE 217
+KT+LC F +G C +G RCHF H +E
Sbjct: 141 KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 28 VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
K+ +C + + C++G KC FAHG EL
Sbjct: 104 YKTELCRTFSESGRCRYGAKCQFAHGLGEL 133
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 180 GSAAHPLSSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
GS + S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 117 GSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 157
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 26 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
T K+ +C + CK+G+KC FAHG EL
Sbjct: 125 TRYKTELCRPFEESGTCKYGEKCQFAHGFHEL 156
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 190 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
+KT+LC F G C +G RCHF H A E R
Sbjct: 165 YKTELCRTFHTIGFCPYGPRCHFIHNADERR 195
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 189 NFKTKLCGNFAK-GSCTFGDRCHFAHGAAELRK 220
+KT+LC F++ G C +G +C FAHG ELR+
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 133
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 189 NFKTKLCGNFA-KGSCTFGDRCHFAHGAAE 217
+KT+LC F +G C +G RCHF H +E
Sbjct: 139 KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 28 VKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKP 60
K+ +C + + C++G KC FAHG EL +P
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQP 134
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 187 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 151 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 184
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 26 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
T K+ +C + CK+G+KC FAHG EL
Sbjct: 152 TRYKTELCRPFEESGTCKYGEKCQFAHGFHEL 183
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 190 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
+KT+LC F G C +G RCHF H A E R
Sbjct: 192 YKTELCRTFHTIGFCPYGPRCHFIHNADERR 222
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 189 NFKTKLCGNFAK-GSCTFGDRCHFAHGAAELRKTA 222
+KT+LC F++ G C +G +C FAHG ELR+ +
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQAS 135
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 189 NFKTKLCGNFA-KGSCTFGDRCHFAHGAAE 217
+KT+LC F +G C +G RCHF H +E
Sbjct: 139 KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 28 VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
K+ +C + + C++G KC FAHG EL
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGEL 131
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 183 AHPLSSNFKTKLCGNFAKGSCTFGDRCHFAH 213
+H LSS +T +C F KG C FGDRC + H
Sbjct: 41 SHDLSSCKQTMICKFFQKGCCAFGDRCRYEH 71
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 189 NFKTKLCGNFAKG--SCTFGDRCHFAHGAAELRKT 221
N+KT+LC A G C G RC FAHG ELR T
Sbjct: 270 NYKTRLCMMHASGIKPCDMGARCKFAHGLKELRAT 304
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 177 ATAGSAAHPLSSNFKTKLCGNFAKGS---CTFGDRCHFAH 213
AT A +P ++ +KTKLC NFA+G C +G RC F H
Sbjct: 303 ATDAPARYP-NNKYKTKLCKNFARGGTGFCPYGLRCEFVH 341
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 13 RNMAVPPPASNGPTVVKSRMCNRLNSAEG---CKFGDKCHFAHGEWEL 57
R +P S P K+R+C + A G C G +C FAHG EL
Sbjct: 256 RGFPIPETDSQQPPNYKTRLC--MMHASGIKPCDMGARCKFAHGLKEL 301
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 191 KTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
KT+LC + + G+C +GD C FAHG ELR
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 27 VVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPI 61
+ K+ +CN+ C +GD C FAHG EL +P+
Sbjct: 222 MTKTELCNKWQETGTCPYGDHCQFAHGIKEL-RPV 255
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 190 FKTKLCGNFAKG-SCTFGDRCHFAHGAAELRK 220
+KT++C G +C +G RCHF H +E K
Sbjct: 261 YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEK 292
>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens
GN=ANKRD17 PE=1 SV=3
Length = 2603
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 101 KISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAM 160
K+SV +++ +IG+GG N I TGA + I + R I + G E +QA+ +
Sbjct: 1729 KVSVPSTVISRVIGRGGCNINAIREFTGAHIDIDKQKDKTGDRIITIRGGTESTRQATQL 1788
Query: 161 VRELI 165
+ LI
Sbjct: 1789 INALI 1793
>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus
GN=Ankrd17 PE=1 SV=2
Length = 2603
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 101 KISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAM 160
K+SV +++ +IG+GG N I TGA + I + R I + G E +QA+ +
Sbjct: 1725 KVSVPSTVISRVIGRGGCNINAIRECTGAHIDIDKQKDKTGDRIITIRGGTESTRQATQL 1784
Query: 161 VRELI 165
+ LI
Sbjct: 1785 INALI 1789
>sp|Q8UVD9|FUBP2_CHICK Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP
PE=1 SV=1
Length = 769
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 73 AVPGRMGGRYEPPPAPGPAASFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLS 132
A+P ++G + PP + + T + V + G IIG+GG +I + +G K+
Sbjct: 192 ALPPQLGPMHPPPRS--------TTVTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQ 243
Query: 133 IRDHEADPNLRNIELEGSFEQIKQASAMVRELIVR 167
I R++ L GS E +++A M+ +++ R
Sbjct: 244 ISPDSGGLPERSVSLTGSPEAVQKAKLMLDDIVSR 278
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 102 ISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQAS 158
S+ G +IG+GG N K I +Q GA + I DPN + + GS +QI+ A
Sbjct: 491 FSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHAK 550
Query: 159 AMVRELI 165
+ E I
Sbjct: 551 QPIEEKI 557
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 101 KISVDASLAGAIIGKGGVNSKQICRQTGAKLS-IRDHEADPNL-RNIELEGSFEQIKQAS 158
+I + A AG +IGKGG KQ+ + G K+ I+D + N+ + + + G +++QA
Sbjct: 300 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQAC 359
Query: 159 AMVRELI 165
MV +++
Sbjct: 360 EMVMDIL 366
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 OS=Rattus norvegicus
GN=Khsrp PE=1 SV=1
Length = 721
Score = 39.3 bits (90), Expect = 0.020, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 103 SVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASA 159
S+ G +IG+GG N K I +QTGA + I DPN + + GS +QI A
Sbjct: 431 SIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQ 490
Query: 160 MVRELI 165
++ E I
Sbjct: 491 LIEEKI 496
Score = 37.4 bits (85), Expect = 0.074, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 76 GRMGGRYEPPPAPGPAASFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRD 135
G G PPP S T + V + G IIG+GG +I + +G K+ I
Sbjct: 132 GSQLGPIHPPPR--------TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISP 183
Query: 136 HEADPNLRNIELEGSFEQIKQASAMVRELIVR 167
R++ L G+ E +++A M+ +++ R
Sbjct: 184 DSGGLPERSVSLTGAPESVQKAKMMLDDIVSR 215
Score = 35.0 bits (79), Expect = 0.40, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 80 GRYEPPPAPGPAASFGASATAK-ISVDASLAGAIIGKGGVNSKQICRQTGAKLS-IRDHE 137
GR PP A+ G + T + I + A AG +IGKGG KQ+ + G K+ I+D
Sbjct: 216 GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS 275
Query: 138 ADPNL-RNIELEGSFEQIKQASAMVRELI 165
+ N+ + + + G +++QA MV +++
Sbjct: 276 QNTNVDKPLRIIGDPYKVQQACEMVMDIL 304
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 190 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
KT+LC + + G+C +GD C FAHG ELR
Sbjct: 233 MKTELCNKWQETGACCYGDNCQFAHGIDELR 263
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 27 VVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPI 61
++K+ +CN+ C +GD C FAHG EL +P+
Sbjct: 232 MMKTELCNKWQETGACCYGDNCQFAHGIDEL-RPV 265
>sp|Q5VR07|C3H1_ORYSJ Zinc finger CCCH domain-containing protein 1 OS=Oryza sativa subsp.
japonica GN=Os01g0174600 PE=2 SV=1
Length = 279
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 173 AKNPATAGSAAHPLSSNF-KTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
A P + G A P F KT++C F G C F D C FAHG ELR
Sbjct: 39 AVEPESGGFAYEPPEKLFYKTRVCETFVTSGRCMFEDGCTFAHGDEELR 87
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 6 QAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 57
+AV S A PP K+R+C ++ C F D C FAHG+ EL
Sbjct: 38 KAVEPESGGFAYEPPEK---LFYKTRVCETFVTSGRCMFEDGCTFAHGDEEL 86
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 192 TKLCGNFA-KGSCTFGDRCHFAH-GAAELRK 220
TK+C F KG C FG+ C F H AAE+R+
Sbjct: 142 TKVCFEFRDKGICYFGETCAFPHVSAAEIRQ 172
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 176 PATA-GSAAHPLSSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 219
PAT S+A + +KT+LC F + G C + D C +AHG ELR
Sbjct: 84 PATKRHSSAKDKHTEYKTRLCDAFRREGYCPYNDNCTYAHGQDELR 129
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 26 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKP 60
T K+R+C+ C + D C +AHG+ EL P
Sbjct: 97 TEYKTRLCDAFRREGYCPYNDNCTYAHGQDELRVP 131
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 187 SSNFKTKLCGNFAKGSCTFGDRCHFAH 213
SSN + ++C NF +G+C +G RC F H
Sbjct: 183 SSN-RRQICHNFERGNCRYGPRCRFIH 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,806,340
Number of Sequences: 539616
Number of extensions: 3644102
Number of successful extensions: 16427
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 15678
Number of HSP's gapped (non-prelim): 808
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)